NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1544792840|gb|RUI81929|]
View 

molecular chaperone [Pseudomonas aeruginosa]

Protein Classification

molecular chaperone( domain architecture ID 11459711)

molecular chaperone belonging to the periplasmic pilus chaperone family may be involved in fimbrial biogenesis; similar to Escherichia coli fimbrial chaperones, YraI, YqiH, YbgP and ElfD

CATH:  2.60.40.10
Gene Ontology:  GO:0061077|GO:0030288|GO:0043711
PubMed:  1683764|8670884
SCOP:  4002248|4007561

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
FimC COG3121
P pilus assembly protein, chaperone PapD [Extracellular structures];
8-241 1.52e-63

P pilus assembly protein, chaperone PapD [Extracellular structures];


:

Pssm-ID: 442355 [Multi-domain]  Cd Length: 237  Bit Score: 198.29  E-value: 1.52e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840   8 RCGTAWVLLVALVADASASLSVIGTRFIYPAGVSALTIRVGNVGTRPALVQTWLDRGDETADPSAVTVPFILSPPLLRMD 87
Cdd:COG3121     6 RLLLLALLLLLASAAAAAGISISPTRVIYPAGDKEASLTLTNTGDTPYLVQSWVDDWDQDAGPDKATAPFVVTPPLFRLE 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840  88 PQETQALQLRHTGEPLPDDRESLFWVNLLEVPGR--EDGSGNLLLVSYRLRMKLLFRPQGLSGDPRAAARQVVWRLrpav 165
Cdd:COG3121    86 PGKSQTVRIIRTGPPLPQDRESLFRLNVDEIPPKdaSEEGKNTLQIALRTRIKLFYRPAGLKGSPEDAAEKLTWSL---- 161

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1544792840 166 rpgQRALLEADNRSPYHVSLVRLELGEGDLAMSLGSVTLPPFA--LTPLSLPAVPGEAARVHFDAVGDDGQIERGDAP 241
Cdd:COG3121   162 ---VGNGLTVTNPGPYYVTLSDLSLGAGGKKLKKGLGMVLPGStrRWPLPAGASLAAGGKVTWATINDYGGAVPLEAT 236
 
Name Accession Description Interval E-value
FimC COG3121
P pilus assembly protein, chaperone PapD [Extracellular structures];
8-241 1.52e-63

P pilus assembly protein, chaperone PapD [Extracellular structures];


Pssm-ID: 442355 [Multi-domain]  Cd Length: 237  Bit Score: 198.29  E-value: 1.52e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840   8 RCGTAWVLLVALVADASASLSVIGTRFIYPAGVSALTIRVGNVGTRPALVQTWLDRGDETADPSAVTVPFILSPPLLRMD 87
Cdd:COG3121     6 RLLLLALLLLLASAAAAAGISISPTRVIYPAGDKEASLTLTNTGDTPYLVQSWVDDWDQDAGPDKATAPFVVTPPLFRLE 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840  88 PQETQALQLRHTGEPLPDDRESLFWVNLLEVPGR--EDGSGNLLLVSYRLRMKLLFRPQGLSGDPRAAARQVVWRLrpav 165
Cdd:COG3121    86 PGKSQTVRIIRTGPPLPQDRESLFRLNVDEIPPKdaSEEGKNTLQIALRTRIKLFYRPAGLKGSPEDAAEKLTWSL---- 161

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1544792840 166 rpgQRALLEADNRSPYHVSLVRLELGEGDLAMSLGSVTLPPFA--LTPLSLPAVPGEAARVHFDAVGDDGQIERGDAP 241
Cdd:COG3121   162 ---VGNGLTVTNPGPYYVTLSDLSLGAGGKKLKKGLGMVLPGStrRWPLPAGASLAAGGKVTWATINDYGGAVPLEAT 236
PRK09926 PRK09926
fimbrial chaperone;
10-240 1.64e-62

fimbrial chaperone;


Pssm-ID: 236634 [Multi-domain]  Cd Length: 246  Bit Score: 196.09  E-value: 1.64e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840  10 GTAWVLLVALVADASASLSVI---GTRFIYPAGVSALTIRVGNVGTRPALVQTWLDRGDETADPSAVTVPFILSPPLLRM 86
Cdd:PRK09926    7 HTTALCFATCMAFSSSSIADIvisGTRIIYKSDQKDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840  87 DPQETQALQLRHTG-EPLPDDRESLFWVNLLEVPGREDG----SGNLLLVSYRLRMKLLFRPQGLSGDPRAAARQVVWRL 161
Cdd:PRK09926   87 DPKRGQTIKLMYTAsTALPKDRESVFWFNVLEVPPKPDAekvaNQSLLQLAFRTRIKLFYRPDGLKGNPSEAPLALKWSW 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840 162 RpavRPGQRALLEADNRSPYHVSLVRLELGEGDLAMSLGSVTLPPFALTPLSLPAVPGEA--ARVHFDAVGDDGQIERGD 239
Cdd:PRK09926  167 A---GSEGKASLRVTNPTPYYVSFSSGDLEAGGKRYPVDSKMIAPFSDESMKVKGLSGKAssGKVHFYAINDFGGAIEGN 243


                  .
gi 1544792840 240 A 240
Cdd:PRK09926  244 A 244
PapD_N pfam00345
Pili and flagellar-assembly chaperone, PapD N-terminal domain; C2 domain-like beta-sandwich ...
 27-146 6.56e-45

Pili and flagellar-assembly chaperone, PapD N-terminal domain; C2 domain-like beta-sandwich fold. This domain is the n-terminal part of the PapD chaperone protein for pilus and flagellar assembly.


Pssm-ID: 425623  Cd Length: 123  Bit Score: 146.58  E-value: 6.56e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840  27 LSVIGTRFIYPAGVSALTIRVGNVGTRPALVQTWLDRGDETADPSAVTVPFILSPPLLRMDPQETQALQLRHTGEPLPDD 106
Cdd:pfam00345   1 VVLGGTRVIYPAGEKEASVTVSNTGDNPYLVQSWVDDGNEEGTDEKAKAPFIVTPPLFRLEPGQEQVLRIYTTGPPLPTD 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1544792840 107 RESLFWVNLLEVPGRED--GSGNLLLVSYRLRMKLLFRPQGL 146
Cdd:pfam00345  81 RESLFWLNVLEIPPKDKpkGGQNGLQLALRSRIKLFYRPAGL 122
 
Name Accession Description Interval E-value
FimC COG3121
P pilus assembly protein, chaperone PapD [Extracellular structures];
8-241 1.52e-63

P pilus assembly protein, chaperone PapD [Extracellular structures];


Pssm-ID: 442355 [Multi-domain]  Cd Length: 237  Bit Score: 198.29  E-value: 1.52e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840   8 RCGTAWVLLVALVADASASLSVIGTRFIYPAGVSALTIRVGNVGTRPALVQTWLDRGDETADPSAVTVPFILSPPLLRMD 87
Cdd:COG3121     6 RLLLLALLLLLASAAAAAGISISPTRVIYPAGDKEASLTLTNTGDTPYLVQSWVDDWDQDAGPDKATAPFVVTPPLFRLE 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840  88 PQETQALQLRHTGEPLPDDRESLFWVNLLEVPGR--EDGSGNLLLVSYRLRMKLLFRPQGLSGDPRAAARQVVWRLrpav 165
Cdd:COG3121    86 PGKSQTVRIIRTGPPLPQDRESLFRLNVDEIPPKdaSEEGKNTLQIALRTRIKLFYRPAGLKGSPEDAAEKLTWSL---- 161

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1544792840 166 rpgQRALLEADNRSPYHVSLVRLELGEGDLAMSLGSVTLPPFA--LTPLSLPAVPGEAARVHFDAVGDDGQIERGDAP 241
Cdd:COG3121   162 ---VGNGLTVTNPGPYYVTLSDLSLGAGGKKLKKGLGMVLPGStrRWPLPAGASLAAGGKVTWATINDYGGAVPLEAT 236
PRK09926 PRK09926
fimbrial chaperone;
10-240 1.64e-62

fimbrial chaperone;


Pssm-ID: 236634 [Multi-domain]  Cd Length: 246  Bit Score: 196.09  E-value: 1.64e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840  10 GTAWVLLVALVADASASLSVI---GTRFIYPAGVSALTIRVGNVGTRPALVQTWLDRGDETADPSAVTVPFILSPPLLRM 86
Cdd:PRK09926    7 HTTALCFATCMAFSSSSIADIvisGTRIIYKSDQKDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840  87 DPQETQALQLRHTG-EPLPDDRESLFWVNLLEVPGREDG----SGNLLLVSYRLRMKLLFRPQGLSGDPRAAARQVVWRL 161
Cdd:PRK09926   87 DPKRGQTIKLMYTAsTALPKDRESVFWFNVLEVPPKPDAekvaNQSLLQLAFRTRIKLFYRPDGLKGNPSEAPLALKWSW 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840 162 RpavRPGQRALLEADNRSPYHVSLVRLELGEGDLAMSLGSVTLPPFALTPLSLPAVPGEA--ARVHFDAVGDDGQIERGD 239
Cdd:PRK09926  167 A---GSEGKASLRVTNPTPYYVSFSSGDLEAGGKRYPVDSKMIAPFSDESMKVKGLSGKAssGKVHFYAINDFGGAIEGN 243


                  .
gi 1544792840 240 A 240
Cdd:PRK09926  244 A 244
PapD_N pfam00345
Pili and flagellar-assembly chaperone, PapD N-terminal domain; C2 domain-like beta-sandwich ...
 27-146 6.56e-45

Pili and flagellar-assembly chaperone, PapD N-terminal domain; C2 domain-like beta-sandwich fold. This domain is the n-terminal part of the PapD chaperone protein for pilus and flagellar assembly.


Pssm-ID: 425623  Cd Length: 123  Bit Score: 146.58  E-value: 6.56e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840  27 LSVIGTRFIYPAGVSALTIRVGNVGTRPALVQTWLDRGDETADPSAVTVPFILSPPLLRMDPQETQALQLRHTGEPLPDD 106
Cdd:pfam00345   1 VVLGGTRVIYPAGEKEASVTVSNTGDNPYLVQSWVDDGNEEGTDEKAKAPFIVTPPLFRLEPGQEQVLRIYTTGPPLPTD 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1544792840 107 RESLFWVNLLEVPGRED--GSGNLLLVSYRLRMKLLFRPQGL 146
Cdd:pfam00345  81 RESLFWLNVLEIPPKDKpkGGQNGLQLALRSRIKLFYRPAGL 122
PRK15249 PRK15249
fimbrial chaperone;
12-208 3.81e-34

fimbrial chaperone;


Pssm-ID: 237930 [Multi-domain]  Cd Length: 253  Bit Score: 122.99  E-value: 3.81e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840  12 AWVLLVALVADASASLSVIGTRFIYPAGVSALTIRVGNVGTRPALVQTWLDRGDETADP-SAVTVPFILSPPLLRMDPQE 90
Cdd:PRK15249   15 VFLFLALPATASWASVTILGSRIIYPSTASSVDVQLKNNDAIPYIVQTWFDDGDMNTSPeNSSAMPFIATPPVFRIQPKA 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840  91 TQALQLRHTG-EPLPDDRESLFWVNLLEVPGREDGSG---NLLLVSYRLRMKLLFRPQGLsGDPRAAARQVVWRlrpAVR 166
Cdd:PRK15249   95 GQVVRVIYNNtKKLPQDRESVFWFNVLQVPPTNIGSDsgqNKMLVMLRSRIKLFYRPDGL-GKPDNLAKKLQIK---TVN 170

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1544792840 167 PGQRAL-LEADNRSPYHVSLVRLELGEGDLAMSLGSVTLPPFA 208
Cdd:PRK15249  171 KGSGKSgIVIVNPQPWFASLSNLNVKVNGASYNLDADMIAPFS 213
PRK15218 PRK15218
fimbrial assembly chaperone;
14-147 3.12e-33

fimbrial assembly chaperone;


Pssm-ID: 185140 [Multi-domain]  Cd Length: 226  Bit Score: 120.09  E-value: 3.12e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840  14 VLLVALVADASASLSVIGTRFIYPAGVSALTIRVGNVGTRPALVQTWLDRGDETADPSAVTVPFILSPPLLRMDPQETQA 93
Cdd:PRK15218    7 LCLACAAMPAWSGIYIYGTRIIYPAQKKDITVQLMNDGKRSSLIQAWIDNGDTSLPPEKLQVPFIMTPPVIRVAANSGQQ 86

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1544792840  94 LQLRHTGEPLPDDRESLFWVNLLEVPGREDGSGNLLLVSYRL--RMKLLFRPQGLS 147
Cdd:PRK15218   87 LKIKKLANNLPGDRESLFYLNVLDIPPNSDENKDKNIIKFALqnRIKLIYRPPGVQ 142
PRK15253 PRK15253
putative fimbrial assembly chaperone protein StcB; Provisional
 14-147 1.68e-30

putative fimbrial assembly chaperone protein StcB; Provisional


Pssm-ID: 185165 [Multi-domain]  Cd Length: 242  Bit Score: 113.22  E-value: 1.68e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840  14 VLLVALVADASASLSVIGTRFIYPAGVSALTIRVGNVGTRPALVQTWLDRGDETADPSAVTVPFILSPPLLRMDPQETQA 93
Cdd:PRK15253   22 VLLSAIILPAHAGIVIYGTRVIYPAEKKEVVVQLVNQGEQASLVQSWIDDGNTSLPPEKIQVPFMLTPPVARVAAESGQQ 101

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1544792840  94 LQLRHTGEPLPDDRESLFWVNLLEVP--GREDGSGNLLLVSYRLRMKLLFRPQGLS 147
Cdd:PRK15253  102 IKIKKMPNSLPDNKESLFYLNVLDIPpnSQENAGKNVLKFAMQNRIKLIWRPSRIA 157
PRK15246 PRK15246
fimbrial assembly chaperone;
23-245 1.60e-28

fimbrial assembly chaperone;


Pssm-ID: 185158 [Multi-domain]  Cd Length: 233  Bit Score: 108.12  E-value: 1.60e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840  23 ASASLSVIGTRFIYPAGVSALTIRVGNVGTRPALVQTWLDRGDETADPSAVTVPFILSPPLLRMDPQETQALQL---RHT 99
Cdd:PRK15246    8 AQAAVNIDRTRIIFASDDVAQSLTLSNDNTTPMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLllsSRQ 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840 100 GepLPDDRESLFWVNLLEVPGREDGSGNL---LLVSYRLRMKLLFRPQGLSGDPRAAARQVvwRLRPAVRPgqralLEAD 176
Cdd:PRK15246   88 Q--LATDRESLFWLNIYQIPPVTQDIKNHprkLVLPLRLRLKILIRPTGLKAPTEAEEKKL--RFIAKENT-----IRIV 158

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1544792840 177 NRSPYHVSLVrlelGEGDLAMSLGSVTLPPFALTPLSLPAVPGEAARVHFDAVGDDGQIERGDAPAERY 245
Cdd:PRK15246  159 NPTSWYMSLT----LTMDNKKSIGDIMVAPKTALDVPLTRSPTPGASINYAVINDSGNWRQYTAILEKY 223
PRK15192 PRK15192
pili/flagellar-assembly chaperone;
8-192 1.63e-27

pili/flagellar-assembly chaperone;


Pssm-ID: 185114 [Multi-domain]  Cd Length: 234  Bit Score: 105.55  E-value: 1.63e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840   8 RCGTAWVLLValVADASASLSVIGTRFIYPAGVSALTIRVGNVGTRPALVQTWLDRGDE--TADPSAVTVPFILSPPLLR 85
Cdd:PRK15192    7 RCAIYWCLLP--ISWAQAGVVIGGTRFIYHAGAPALSVPVSNHSEASWLIDTHILPGGRwpGTKNEGNITPFVVTPPLFM 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840  86 MDPQETQALQLRHTGEPLPDDRESLFWVNLLEVPGREDgSGNLLLVSYRLRMKLLFRPQGLSGDPRAAARQVVWRLRP-- 163
Cdd:PRK15192   85 LSARQENSMRVVYTGAPLPADRESLFTLSIAAIPSGKP-EANRVQMAFRSALKLLYRPEGLAGNPQQAYRHLIWSLTPdg 163

                         170       180       190
                  ....*....|....*....|....*....|
gi 1544792840 164 -AVRpgqralleadNRSPYHVSLVRLELGE 192
Cdd:PRK15192  164 aTVR----------NPTPYYVTLFLLRANE 183
PRK15295 PRK15295
fimbrial assembly chaperone;
12-233 4.90e-26

fimbrial assembly chaperone;


Pssm-ID: 237936 [Multi-domain]  Cd Length: 226  Bit Score: 101.17  E-value: 4.90e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840  12 AWVLLVALVAD--ASASLSVIGTRFIYPAGVSALTIRVGNVGTRPALVQTWLdrgdETADP-SAVTVPFILSPPLLRMDP 88
Cdd:PRK15295    4 KKSVLVVLLTShvAHASIVVGGTRLVFDGNNDESSINVENKDSKANLVQSWL----SVVDPqVTNKQAFIITPPLFRLDA 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840  89 QETQALQLRHTGEPLPDDRESLFWVNLLEVPGRED-GSGNLLLVSYRLRMKLLFRPQGLSGD-PRAAARQVVWRLRPAVr 166
Cdd:PRK15295   80 GQKNSIRVIRSGAPLPADRESMYWLNIKGIPSIDDnASANRVEISINTQIKLIYRPPALTKStPDSQSQQLKWQTAGDV- 158

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1544792840 167 pgqralLEADNRSPYHVSLVRLELGEGDLAmslGSVTLPPFALTPLSLPAVPGEAARVHFDAVGDDG 233
Cdd:PRK15295  159 ------ITVNNPTPYYMNFASVTLNSHEVK---SATFVPPKSSASFKLGSTAAPHGTVTWRLISDYG 216
PRK15195 PRK15195
molecular chaperone FimC;
15-235 5.38e-26

molecular chaperone FimC;


Pssm-ID: 185117 [Multi-domain]  Cd Length: 229  Bit Score: 101.09  E-value: 5.38e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840  15 LLVALVADASASLSVIGTRFIYPAGV--SALTIRVGNVGTRpALVQTWLDRGDETADPSavtvpFILSPPLLRMDPQETQ 92
Cdd:PRK15195   15 LIISASVHAAGGIALGATRVIYPADAkqTSLAIRNSHTNER-YLVNSWIENSSGVKEKS-----FIVTPPLFVSEPKSEN 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840  93 ALQLRHTGEPLPDDRESLFWVNLLEVPGREDGS---GNLLLVSYRLRMKLLFRPQGLSGDPRAAARQVVWRlrpavRPGQ 169
Cdd:PRK15195   89 TLRIIYAGPPLAADRESLFWMNVKAIPSVDKNAlegRNVLQLAILSRIKLFVRPINLQELPEEAPDTLKFS-----RSGN 163

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1544792840 170 RalLEADNRSPYHVSLVRLELGegdlAMSLGSVTLPPFALTPLSLPAvpGEAARVHFDAVGDDGQI 235
Cdd:PRK15195  164 H--LKVHNPSPYYVTLVNLQVG----SQKLGNAMIAPKVNSQIPLPS--GVQGKLKFQTVNDYGAV 221
lfpB PRK15290
fimbrial chaperone;
11-216 6.80e-26

fimbrial chaperone;


Pssm-ID: 237934 [Multi-domain]  Cd Length: 243  Bit Score: 101.22  E-value: 6.80e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840  11 TAWVLLVALVADASASLSVI--GTRFIYPAGVSALTIRVGNVGTR-PALVQTWLD--RGDETADPsavtvPFILSPPLLR 85
Cdd:PRK15290   21 TAIILSVFLGQPALTYAGVVigGTRVVYLSNNPDKSISVFSKEEKiPYLIQAWVDpfNKEDKSKA-----PFTVIPPVSR 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840  86 MDPQETQALQLRHT-GEPLPDDRESLFWVNLLEV-PGREDGSGNLLLVSYRLRMKLLFRPQGLSGDPRAAARQVVWRlrp 163
Cdd:PRK15290   96 LEPSQEKVLRIIHTkGVSLPDDRESVFWLNIKNIpPSASNKATNSLEIAVKTRIKLFWRPASIRLIPEDAAPKVKWR--- 172

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1544792840 164 avRPGQRalLEADNRSPYHVSLVRLELGEGDLAMSLgsvtLPPFALTPLSLPA 216
Cdd:PRK15290  173 --REGRN--LIAENPNPIHISVMDVIVDGHDVPLNM----IRPFETLTLPLPA 217
PRK15211 PRK15211
fimbrial chaperone;
14-236 1.06e-25

fimbrial chaperone;


Pssm-ID: 185133 [Multi-domain]  Cd Length: 229  Bit Score: 100.28  E-value: 1.06e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840  14 VLLVALVADASASLSVIGTRFIYPAGVSALTIRVGNVGTRPALVQTWLDRGDETADpsavTVPFILSPPLLRMDPQETQA 93
Cdd:PRK15211   11 LLSLAVCGQAMAAFVLNGTRFIYDEGRKNISFEVTNQADQTYGGQVWIDNTTQGSS----TVYMVPAPPFFKVRPKEKQI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840  94 LQLRHTGEPLPDDRESLFWVNLLEVPGR-EDGSGNLLLVSYRLRMKLLFRPQGLSGDPRAAARQVVWRLRpavrpGQRAL 172
Cdd:PRK15211   87 IRIMKTDSALPKDRESLFWLNVQEIPPKpKASEGNVLAVALNTQVKLIYRPKALKEGRENAEKNLQIIHR-----GGETY 161

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1544792840 173 LEadNRSPYHVSLVRLELGEGDLAMS---LGSVT-LPPFALTPLSLPAVPGEAARVHFDAVGDDGQIE 236
Cdd:PRK15211  162 LK--NPTPYYFAVTGVKLNGQPVKLSdrvMNEIAqLAPFSEVSLGKLSLNGTVTVQAVNDWGGTQDYT 227
PRK15299 PRK15299
fimbrial chaperone protein StiB; Provisional
 6-216 5.70e-25

fimbrial chaperone protein StiB; Provisional


Pssm-ID: 185199 [Multi-domain]  Cd Length: 227  Bit Score: 98.70  E-value: 5.70e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840   6 LGRCGTAWVLLVALVADAsASLSVIGTRFIYPAGVSALTIRVGNVGTRPALVQTWLDRGDETAdpSAVTVPFILSPPLLR 85
Cdd:PRK15299    4 LAKAGLLCCLLCGSLAHA-AGINIGTTRVIFHGDAKDASISISNSDNVPYLIQSWAQSISETG--ASGDAPFMVTPPLFR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840  86 MDPQETQALQLRHTGEPLPDDRESLFWVNLLEVPGRE-DGSGNLLLVSYRLRMKLLFRPQGLSGDPRAAARQVVWRlrpa 164
Cdd:PRK15299   81 LNGGQKNVLRIIRTGGNLPEDRESLYWLDIKSIPSSNpDNKHNTLMLAVKAEFKLIYRPKALTQKPEEVADRLTWS---- 156

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1544792840 165 vRPGQRalLEADNRSPYHVSLVRLELGEGDLAmslGSVTLPPFALTPLSLPA 216
Cdd:PRK15299  157 -RQGRT--LTVKNPTPYYMNFATLSVGSQKVK---APRYVAPFGNAQYTLPA 202
PRK15208 PRK15208
molecular chaperone LpfB;
14-233 3.11e-24

molecular chaperone LpfB;


Pssm-ID: 237925 [Multi-domain]  Cd Length: 228  Bit Score: 96.52  E-value: 3.11e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840  14 VLLVALVADAS--ASLSVIGTRFIYPAGVSALTIRVGNVG-TRPALVQTWLDrgdeTADPSAVTvPFILSPPLLRMDPQE 90
Cdd:PRK15208    8 ALALALIAQNSfaGGVALSSTRVIYDGSKKEASLTVNNKSkTEEFLIQSWID----DANGNKKT-PFIITPPLFKLDPTK 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840  91 TQALQLRHTGEPLPDDRESLFWVNLLEVPGREDGS--GNLLLVSYRLRMKLLFRPQGLSGDPRAAARQVVWRlrpavRPG 168
Cdd:PRK15208   83 NNVLRIVNITNTLPQDRESVYWINVKAIPAKSEDAenKNVLQIAVRTRLKLFYRPAGLKGNSMDAWNKLRFT-----RAG 157

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1544792840 169 QRalLEADNRSPYHVSLVRLELGEGDLAMSlGSVtlPPFALTPLSLPAVPGEAARVHFDAVGDDG 233
Cdd:PRK15208  158 NQ--IKVENPSAFNLTFNQFYANGRDIEKA-GMV--PAKGSLNIELPAGTGKVSEVKYNIINDFG 217
PRK15224 PRK15224
pili assembly chaperone PapD;
21-216 1.73e-20

pili assembly chaperone PapD;


Pssm-ID: 185146 [Multi-domain]  Cd Length: 237  Bit Score: 86.72  E-value: 1.73e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840  21 ADASASLSVIGTRFIYPAGVSALTIRVGNVGTRPALVQTWLDRGDETAdpsavTVPFILSPPLLRMDPQETQALQLRHTG 100
Cdd:PRK15224   24 NTKSFSVKLGATRVIYHAGTAGATLSVSNPQNYPILVQSSVKAADKSS-----PAPFLVMPPLFRLEANQQSQLRIVRTG 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840 101 EPLPDDRESLFWVNLLEVPGREDGS-----GNLLLVSYRLRM--KLLFRPQGLSGDPRAAARQVVWrlrpaVRPGQRalL 173
Cdd:PRK15224   99 GDMPTDRETLQWVCIKAVPPENEPSdtqakGATLDLNLSINVcdKLIFRPDAVKGTPEDVAGNLRW-----VETGNK--L 171

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1544792840 174 EADNRSPYHVSLVRLELGEGDLAmslGSVTLPPFALTPLSLPA 216
Cdd:PRK15224  172 KVENPTPFYMNLASVTVGGKPIT---GLEYIPPFADKTLNMPG 211
PRK15188 PRK15188
fimbrial chaperone protein BcfB; Provisional
 21-233 5.77e-19

fimbrial chaperone protein BcfB; Provisional


Pssm-ID: 185110 [Multi-domain]  Cd Length: 228  Bit Score: 82.50  E-value: 5.77e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840  21 ADASASLSVIGTRFIYPAGVSALTIRVGNVGTRPA-LVQTWLDRGDetadpSAVTVPFILSPPLLRMDPQETQALQLRHT 99
Cdd:PRK15188   23 AAQAGGIALGATRVIYPQGSKQTSLPIINSSASNVfLIQSWVANAD-----GSRSTDFIITPPLFVIQPKKENILRIMYV 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840 100 GEPLPDDRESLFWVNLLEVPGREDG--SGNLLLVSYRLRMKLLFRPQGLSGDPRAAARQVVWRlrpavrpGQRALLEADN 177
Cdd:PRK15188   98 GPSLPTDRESVFYLNSKAIPSVDKNklTGNSLQIATQSVIKLFIRPKNLAEAPAHAPSTLRCR-------NERGQLTITN 170

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1544792840 178 RSPYHVSLVRLElgegDLAMSLGSVTLPPFAltPLSLPAVPGEaarVHFDAVGDDG 233
Cdd:PRK15188  171 PSPYYVSMVELY----SAGKKLPNTMVPPKG--AITLPATPGQ---VSLRTVNDFG 217
PRK11385 PRK11385
fimbrial chaperone;
14-190 1.01e-17

fimbrial chaperone;


Pssm-ID: 183112 [Multi-domain]  Cd Length: 236  Bit Score: 79.41  E-value: 1.01e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840  14 VLLVALVADASASLSVIGTRFIYPAGVSALTIRVGNVGTRPALVQTWLDRGDETADPSAVTV--PFILSPPLLRMDPQET 91
Cdd:PRK11385   15 VLSLLVAGELQAGVVVGGTRFIFPADRESISILLTNTSQESWLINSKINRPTRWAGGEASTVpaPLLAAPPLILLKPGTT 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840  92 QALQ-LRHTGEPLPDDRESLFWVNLLEVP-GREDGSGnlLLVSYRLRMKLLFRPQGLSGDPRAAARQVVWrlrpaVRPGQ 169
Cdd:PRK11385   95 GTLRlLRTESDILPVDRETLFELSIASVPsGKVENQS--VKVAMRSVFKLFWRPEGLPGDPLEAYQQLRW-----TRNSQ 167

                         170       180
                  ....*....|....*....|.
gi 1544792840 170 RALLEadNRSPYHVSLVRLEL 190
Cdd:PRK11385  168 GVQLT--NPTPYYINLIQVSV 186
PRK15285 PRK15285
fimbrial chaperone StfD;
6-147 2.06e-14

fimbrial chaperone StfD;


Pssm-ID: 185185 [Multi-domain]  Cd Length: 250  Bit Score: 70.58  E-value: 2.06e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840   6 LGRCGTAWVLLVAL--VADASASLSVIGTRFIYPAGVSALTIRVGNVGTR-PALVQTWLDrgDETAdpSAVTVPFILSPP 82
Cdd:PRK15285    4 LKRYNLAAVLLLLLggYGSAQAAIAPDRTRLVFRGEDKSISVDLKNANSKlPYLAQSWVE--DEKG--VKITSPLIVVPP 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1544792840  83 LLRMDPQETQalQLRHTGEP----LPDDRESLFWVNLLEVPGREDgSGNLLLVSYRLRMKLLFRPQGLS 147
Cdd:PRK15285   80 VQRIEPSAIG--QVKIQGMPalasLPQDRETLFYYNVREIPPQSD-KPNTLQIALQTRIKVFYRPQALS 145
PRK15274 PRK15274
putative periplasmic fimbrial chaperone protein SteC; Provisional
 12-206 2.51e-12

putative periplasmic fimbrial chaperone protein SteC; Provisional


Pssm-ID: 185177 [Multi-domain]  Cd Length: 257  Bit Score: 64.80  E-value: 2.51e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840  12 AWVLLVALVADASASLSvIGTRFIYPAGVSALTIRVGN-VGTRPALVQTWLDRGDETADpsavTVPFILSPPLLRMDPQE 90
Cdd:PRK15274   14 ASVLLAAPLVSHSAIVP-DRTRVIFNGNENSITVTLKNgNATLPYLAQAWLEDDKFAKD----TRYFTALPPLQRIEPKS 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840  91 TQALQLRH--TGEPLPDDRESLFWVNLLEVPGREDgSGNLLLVSYRLRMKLLFRPQglsgdprAAARQV----VWRLRPA 164
Cdd:PRK15274   89 DGQVKVQPlpAAASLPQDRESLFYFNVREIPPKSD-KPNTLQLALQTRIKFFYRPV-------AVARQVdkthPWQTKLT 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1544792840 165 VRPGQRALLeADNRSPYHVSLVRLELGEGDLAMSLGSVTLPP 206
Cdd:PRK15274  161 LTYQGDGVI-FDNPTPFYLVISNAGSKENETASGFKNLLIAP 201
PRK15254 PRK15254
fimbrial chaperone protein StdC; Provisional
 14-236 3.42e-12

fimbrial chaperone protein StdC; Provisional


Pssm-ID: 185166 [Multi-domain]  Cd Length: 239  Bit Score: 64.02  E-value: 3.42e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840  14 VLLVALVADAS----ASLSVIGTRFIYPAGVSALTIRVGNVG-TRPALVQTWLDRGDetadpSAVTVPFILSPPLLRMDP 88
Cdd:PRK15254    1 VILLALAAAWSqyspAAVNVDRTRIIMDAPQKTVAITLNNDDkTTPFLAQSWVTDAD-----GVRTDALMALPPLQRIDA 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840  89 -QETQA--LQLRHTGEPLPDDRESLFWVNLLEVPGREDgSGNLLLVSYRLRMKLLFRPQGLSgdpRAAARQVVWRLRPAV 165
Cdd:PRK15254   76 gQKSQVriTQVRGLTDKLPQDRETLFWFNVRGVPPKPE-DDNVLQLAMQSQLKLFYRPKAII---RSSSDQPERKLTAER 151

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1544792840 166 RPGQRALleaDNRSPYHVSLVRLELGEGD-LAMSLGSVTLPPFALTPLSlPAVPGEAARVHFDAVGDDGQIE 236
Cdd:PRK15254  152 NAGHLTL---RNPTPYYITVAWLGADRSHrLSGFREGVMVPPLGSLPLK-AVLPAETRTLWVGYIDDYGGLQ 219
PapD_C pfam02753
Pili assembly chaperone PapD, C-terminal domain; Ig-like beta-sandwich fold. This domain is ...
 176-237 5.78e-11

Pili assembly chaperone PapD, C-terminal domain; Ig-like beta-sandwich fold. This domain is the C-terminal part of the pilus and flagellar-assembly chaperone protein PapD.


Pssm-ID: 426960 [Multi-domain]  Cd Length: 63  Bit Score: 56.50  E-value: 5.78e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1544792840 176 DNRSPYHVSLVRLELGEGDLAMSLGSVTLPPFALTPLSLPAVPGEAARVHFDAVGDDGQIER 237
Cdd:pfam02753   2 KNPTPYYVTFSSLSLGGGGKELALDPGMVAPFSSQTFAGLPAPAAGGTVSYTYINDYGGIVP 63
PRK15233 PRK15233
fimbrial chaperone SefB;
32-144 1.67e-06

fimbrial chaperone SefB;


Pssm-ID: 185149 [Multi-domain]  Cd Length: 246  Bit Score: 47.80  E-value: 1.67e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1544792840  32 TRFIYPAGVSALTIRVGNVGTRPALVQTWLDRGDETAdpsavTVPFILSPPLLRMDPQETQALQLRHTGEPLPDDRESLF 111
Cdd:PRK15233   47 TRVIYKEDAPSTSFWIMNEKEYPILVQTQVYNDDKSS-----KAPFIVTPPILKVESNARTRLKVIPTSNLFNKNEESLY 121

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1544792840 112 WVNLLEVPGREDG-SGNLLLVSYRLR--------MKLLFRPQ 144
Cdd:PRK15233  122 WLCVKGVPPLNDNeSNNKNNITTNLNvnvvtnscIKLIYRPK 163
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH