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Conserved domains on  [gi|1541854961|gb|RTP93131|]
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flagellar filament capping protein FliD [Enterobacter asburiae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
fliD super family cl35636
flagellar capping protein; Reviewed
 1-472 4.25e-168

flagellar capping protein; Reviewed


The actual alignment was detected with superfamily member PRK08032:

Pssm-ID: 236141 [Multi-domain]  Cd Length: 462  Bit Score: 481.50  E-value: 4.25e-168
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961   1 MATISNLGIGSA-GLGDLYNQLDAAERTKLTTITSQQSTYNAQLSAYGKLQSAMTSLQTATAALGKATTWNSTSVSSTNT 79
Cdd:PRK08032    1 MASISSLGVGSGlDLDSLLDSLTAAEKKRLTPITNQQSSYTAKLTAYGTLKSALEKFQTANTALNKADLFSSTKVSSSTT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961  80 AFTATTTADASVGSFVVNVNQVAKAQALTTGSYANNTDLLGDTtGTTRKITITQPGTKTPLEVTLADGDTSLAGIASAIN 159
Cdd:PRK08032   81 AFSATTDSGASAGKYTISVTQLAQAQSLTTATVSSTKEALGTS-DSTRTITITQPGRKEPLEIDLTAGQTSLSGIRDAIN 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 160 KANGNVTASVIKAKDGDYRLMLSSKTTGTDGEMTISVTGDDKLQNAIGYNSTTKTGALTVNTGAQNAIVVVNSISIERQT 239
Cdd:PRK08032  160 KAEGGVSASIIKVGDGEYRLVLTSKDTGTDNAMTISVEGDSKLNDFLNYDSSTGSGNMTQSVAAQNAKLTVNGIAIERQS 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 240 NTITDALPGVTFSLKAESKADETLEVTRATDANQKAITDWVTAYNSLQSTINSLTKYVPVDAGAgSQSASNGALVGDANV 319
Cdd:PRK08032  240 NTITDAPEGITLNLKKVTTGNQTLTITKDTTKAKEAIKDWVDAYNSLQDTFSSLTKYTAVDAGA-DQSSSNGALLGDSTL 318

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 320 RGIQSQLRGLLTEVQSGS-VQIMAQLGITQDPvkgsdgTVGNLKVDTDKLKKALTENPNAVQQYFVGDGKKTGMATQMNN 398
Cdd:PRK08032  319 RTIQTQLKSQLANSQSSSdFKTLAQIGITQDP------SDGKLEIDDDKLTKALKEDPAGVKALFVGDGKKTGITTQIAT 392

                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1541854961 399 TLTTMLStstgSAGVIQNAKDGINKTLKTLGERYDAMEATIDATMARYKTQFTSLDVLVTKMTNTANYLTQQFS 472
Cdd:PRK08032  393 NLKSWLS----TTGIIKTATDGVNKTLKKLTKQYNAVSDSIDATIARYKAQFTQLDKLMTSLNSTSSYLTQQFE 462
 
Name Accession Description Interval E-value
fliD PRK08032
flagellar capping protein; Reviewed
 1-472 4.25e-168

flagellar capping protein; Reviewed


Pssm-ID: 236141 [Multi-domain]  Cd Length: 462  Bit Score: 481.50  E-value: 4.25e-168
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961   1 MATISNLGIGSA-GLGDLYNQLDAAERTKLTTITSQQSTYNAQLSAYGKLQSAMTSLQTATAALGKATTWNSTSVSSTNT 79
Cdd:PRK08032    1 MASISSLGVGSGlDLDSLLDSLTAAEKKRLTPITNQQSSYTAKLTAYGTLKSALEKFQTANTALNKADLFSSTKVSSSTT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961  80 AFTATTTADASVGSFVVNVNQVAKAQALTTGSYANNTDLLGDTtGTTRKITITQPGTKTPLEVTLADGDTSLAGIASAIN 159
Cdd:PRK08032   81 AFSATTDSGASAGKYTISVTQLAQAQSLTTATVSSTKEALGTS-DSTRTITITQPGRKEPLEIDLTAGQTSLSGIRDAIN 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 160 KANGNVTASVIKAKDGDYRLMLSSKTTGTDGEMTISVTGDDKLQNAIGYNSTTKTGALTVNTGAQNAIVVVNSISIERQT 239
Cdd:PRK08032  160 KAEGGVSASIIKVGDGEYRLVLTSKDTGTDNAMTISVEGDSKLNDFLNYDSSTGSGNMTQSVAAQNAKLTVNGIAIERQS 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 240 NTITDALPGVTFSLKAESKADETLEVTRATDANQKAITDWVTAYNSLQSTINSLTKYVPVDAGAgSQSASNGALVGDANV 319
Cdd:PRK08032  240 NTITDAPEGITLNLKKVTTGNQTLTITKDTTKAKEAIKDWVDAYNSLQDTFSSLTKYTAVDAGA-DQSSSNGALLGDSTL 318

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 320 RGIQSQLRGLLTEVQSGS-VQIMAQLGITQDPvkgsdgTVGNLKVDTDKLKKALTENPNAVQQYFVGDGKKTGMATQMNN 398
Cdd:PRK08032  319 RTIQTQLKSQLANSQSSSdFKTLAQIGITQDP------SDGKLEIDDDKLTKALKEDPAGVKALFVGDGKKTGITTQIAT 392

                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1541854961 399 TLTTMLStstgSAGVIQNAKDGINKTLKTLGERYDAMEATIDATMARYKTQFTSLDVLVTKMTNTANYLTQQFS 472
Cdd:PRK08032  393 NLKSWLS----TTGIIKTATDGVNKTLKKLTKQYNAVSDSIDATIARYKAQFTQLDKLMTSLNSTSSYLTQQFE 462
FliD COG1345
Flagellar capping protein FliD [Cell motility];
1-473 5.15e-128

Flagellar capping protein FliD [Cell motility];


Pssm-ID: 440956 [Multi-domain]  Cd Length: 450  Bit Score: 378.80  E-value: 5.15e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961   1 MATISNLGIGSaGL--GDLYNQLDAAERTKLTTITSQQSTYNAQLSAYGKLQSAMTSLQTATAALGKATTWNSTSV-SST 77
Cdd:COG1345     1 MASISSLGLGS-GLdtDSLVSQLMAAERAPLTRLTQQQTSLEAQISAYGTLKSALSSLQDALSALKKSSTFNAKKAtSSN 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961  78 NTAFTATTTADASVGSFVVNVNQVAKAQALTTGSYANNTDLLGDTTgttrkITITQpGTKTPLEVTLADGDTsLAGIASA 157
Cdd:COG1345    80 ESAVTATATSGAAAGSYSIEVTQLAQAQSLASAAFASATTTLGTGT-----LTITV-GDGKTVTITIDANDT-LADIADA 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 158 INKANGNVTASVIKakDGDYRLMLSSKTTGTDGEMTISVTGDDKLQNAIGYNSTTktgALTVNTGAQNAIVVVNSISIER 237
Cdd:COG1345   153 INAAGAGVTASIVN--DGSYRLVLTSKKTGAANAITVSVSGDGALSALLGFDPAS---GMTETQAAQDAKLTVNGITITS 227

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 238 QTNTITDALPGVTFSLKAESKADETLEVTRATDANQKAITDWVTAYNSLQSTINSLTKYvpvdaGAGSQSASNGALVGDA 317
Cdd:COG1345   228 SSNTFTDAIDGVTLTLKKVTGGPVTLTVSTDTDAIKKAIKDFVDAYNELIDTINSLTKY-----TKDEETAKAGALLGDS 302

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 318 NVRGIQSQLRGLLTEVQ--SGSVQIMAQLGITQDpvkgSDGTvgnLKVDTDKLKKALTENPNAVQQYFVGDGKKTGMATQ 395
Cdd:COG1345   303 TLRSLQSQLRSALSSPVsgGGSYKSLSDIGITTD----KDGK---LELDETKLDKALAEDPDAVAKLFTGDGKTTGIATR 375

                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1541854961 396 MNNtlttMLSTSTGSAGVIQNAKDGINKTLKTLGERYDAMEATIDATMARYKTQFTSLDVLVTKMTNTANYLTQQFSQ 473
Cdd:COG1345   376 LDD----LLDSYTGSDGTITSRTDGLNKQLKDLDDQIERLEDRLEAREARYRKQFTALDTAMSQLNSQSSYLTQQLAS 449
FliD_C pfam07195
Flagellar hook-associated protein 2 C-terminus; The flagellar hook-associated protein 2 (HAP2 ...
 223-462 2.14e-53

Flagellar hook-associated protein 2 C-terminus; The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria. This alignment covers the C-terminal region of this family of proteins.


Pssm-ID: 429344 [Multi-domain]  Cd Length: 230  Bit Score: 179.02  E-value: 2.14e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 223 AQNAIVVVNSISIERQTNTITDALPGVTFSLKAESKADE-TLEVTRATDANQKAITDWVTAYNSLQSTINSLTKYvpvda 301
Cdd:pfam07195   1 AQNAEFTVDGIKVTSSSNTVTDVIDGVTLNLTKTTEGGEtTLSVSTDTDGIKEAIKDFVDAYNELITTINELTSY----- 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 302 GAGSQSASNGALVGDANVRGIQSQLRGLLT-EVQSGSVQIMAQLGITQDPvkgsdgTVGNLKVDTDKLKKALTENPNAVQ 380
Cdd:pfam07195  76 TLDEETKKAGALAGDSTLRSILSQLRSVLSsSVSDGSISSLADIGITTDS------DYGTLELDEEKLDKALKENPDSVA 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 381 QYFVGDGK--KTGMATQMNNtltTMLSTSTGSAGVIQNAKDGINKTLKTLGERYDAMEATIDATMARYKTQFTSLDVLVT 458
Cdd:pfam07195 150 ELFTGDGSrvDTGFAKRLTD---LLKSYVGASNGTIAGRSDSLNKQIKRLDKQIEDLDKRLETLEARLTAQFTAMDTAVS 226


                  ....
gi 1541854961 459 KMTN 462
Cdd:pfam07195 227 KMNA 230
 
Name Accession Description Interval E-value
fliD PRK08032
flagellar capping protein; Reviewed
 1-472 4.25e-168

flagellar capping protein; Reviewed


Pssm-ID: 236141 [Multi-domain]  Cd Length: 462  Bit Score: 481.50  E-value: 4.25e-168
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961   1 MATISNLGIGSA-GLGDLYNQLDAAERTKLTTITSQQSTYNAQLSAYGKLQSAMTSLQTATAALGKATTWNSTSVSSTNT 79
Cdd:PRK08032    1 MASISSLGVGSGlDLDSLLDSLTAAEKKRLTPITNQQSSYTAKLTAYGTLKSALEKFQTANTALNKADLFSSTKVSSSTT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961  80 AFTATTTADASVGSFVVNVNQVAKAQALTTGSYANNTDLLGDTtGTTRKITITQPGTKTPLEVTLADGDTSLAGIASAIN 159
Cdd:PRK08032   81 AFSATTDSGASAGKYTISVTQLAQAQSLTTATVSSTKEALGTS-DSTRTITITQPGRKEPLEIDLTAGQTSLSGIRDAIN 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 160 KANGNVTASVIKAKDGDYRLMLSSKTTGTDGEMTISVTGDDKLQNAIGYNSTTKTGALTVNTGAQNAIVVVNSISIERQT 239
Cdd:PRK08032  160 KAEGGVSASIIKVGDGEYRLVLTSKDTGTDNAMTISVEGDSKLNDFLNYDSSTGSGNMTQSVAAQNAKLTVNGIAIERQS 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 240 NTITDALPGVTFSLKAESKADETLEVTRATDANQKAITDWVTAYNSLQSTINSLTKYVPVDAGAgSQSASNGALVGDANV 319
Cdd:PRK08032  240 NTITDAPEGITLNLKKVTTGNQTLTITKDTTKAKEAIKDWVDAYNSLQDTFSSLTKYTAVDAGA-DQSSSNGALLGDSTL 318

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 320 RGIQSQLRGLLTEVQSGS-VQIMAQLGITQDPvkgsdgTVGNLKVDTDKLKKALTENPNAVQQYFVGDGKKTGMATQMNN 398
Cdd:PRK08032  319 RTIQTQLKSQLANSQSSSdFKTLAQIGITQDP------SDGKLEIDDDKLTKALKEDPAGVKALFVGDGKKTGITTQIAT 392

                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1541854961 399 TLTTMLStstgSAGVIQNAKDGINKTLKTLGERYDAMEATIDATMARYKTQFTSLDVLVTKMTNTANYLTQQFS 472
Cdd:PRK08032  393 NLKSWLS----TTGIIKTATDGVNKTLKKLTKQYNAVSDSIDATIARYKAQFTQLDKLMTSLNSTSSYLTQQFE 462
FliD COG1345
Flagellar capping protein FliD [Cell motility];
1-473 5.15e-128

Flagellar capping protein FliD [Cell motility];


Pssm-ID: 440956 [Multi-domain]  Cd Length: 450  Bit Score: 378.80  E-value: 5.15e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961   1 MATISNLGIGSaGL--GDLYNQLDAAERTKLTTITSQQSTYNAQLSAYGKLQSAMTSLQTATAALGKATTWNSTSV-SST 77
Cdd:COG1345     1 MASISSLGLGS-GLdtDSLVSQLMAAERAPLTRLTQQQTSLEAQISAYGTLKSALSSLQDALSALKKSSTFNAKKAtSSN 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961  78 NTAFTATTTADASVGSFVVNVNQVAKAQALTTGSYANNTDLLGDTTgttrkITITQpGTKTPLEVTLADGDTsLAGIASA 157
Cdd:COG1345    80 ESAVTATATSGAAAGSYSIEVTQLAQAQSLASAAFASATTTLGTGT-----LTITV-GDGKTVTITIDANDT-LADIADA 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 158 INKANGNVTASVIKakDGDYRLMLSSKTTGTDGEMTISVTGDDKLQNAIGYNSTTktgALTVNTGAQNAIVVVNSISIER 237
Cdd:COG1345   153 INAAGAGVTASIVN--DGSYRLVLTSKKTGAANAITVSVSGDGALSALLGFDPAS---GMTETQAAQDAKLTVNGITITS 227

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 238 QTNTITDALPGVTFSLKAESKADETLEVTRATDANQKAITDWVTAYNSLQSTINSLTKYvpvdaGAGSQSASNGALVGDA 317
Cdd:COG1345   228 SSNTFTDAIDGVTLTLKKVTGGPVTLTVSTDTDAIKKAIKDFVDAYNELIDTINSLTKY-----TKDEETAKAGALLGDS 302

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 318 NVRGIQSQLRGLLTEVQ--SGSVQIMAQLGITQDpvkgSDGTvgnLKVDTDKLKKALTENPNAVQQYFVGDGKKTGMATQ 395
Cdd:COG1345   303 TLRSLQSQLRSALSSPVsgGGSYKSLSDIGITTD----KDGK---LELDETKLDKALAEDPDAVAKLFTGDGKTTGIATR 375

                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1541854961 396 MNNtlttMLSTSTGSAGVIQNAKDGINKTLKTLGERYDAMEATIDATMARYKTQFTSLDVLVTKMTNTANYLTQQFSQ 473
Cdd:COG1345   376 LDD----LLDSYTGSDGTITSRTDGLNKQLKDLDDQIERLEDRLEAREARYRKQFTALDTAMSQLNSQSSYLTQQLAS 449
FliD_C pfam07195
Flagellar hook-associated protein 2 C-terminus; The flagellar hook-associated protein 2 (HAP2 ...
 223-462 2.14e-53

Flagellar hook-associated protein 2 C-terminus; The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria. This alignment covers the C-terminal region of this family of proteins.


Pssm-ID: 429344 [Multi-domain]  Cd Length: 230  Bit Score: 179.02  E-value: 2.14e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 223 AQNAIVVVNSISIERQTNTITDALPGVTFSLKAESKADE-TLEVTRATDANQKAITDWVTAYNSLQSTINSLTKYvpvda 301
Cdd:pfam07195   1 AQNAEFTVDGIKVTSSSNTVTDVIDGVTLNLTKTTEGGEtTLSVSTDTDGIKEAIKDFVDAYNELITTINELTSY----- 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 302 GAGSQSASNGALVGDANVRGIQSQLRGLLT-EVQSGSVQIMAQLGITQDPvkgsdgTVGNLKVDTDKLKKALTENPNAVQ 380
Cdd:pfam07195  76 TLDEETKKAGALAGDSTLRSILSQLRSVLSsSVSDGSISSLADIGITTDS------DYGTLELDEEKLDKALKENPDSVA 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 381 QYFVGDGK--KTGMATQMNNtltTMLSTSTGSAGVIQNAKDGINKTLKTLGERYDAMEATIDATMARYKTQFTSLDVLVT 458
Cdd:pfam07195 150 ELFTGDGSrvDTGFAKRLTD---LLKSYVGASNGTIAGRSDSLNKQIKRLDKQIEDLDKRLETLEARLTAQFTAMDTAVS 226


                  ....
gi 1541854961 459 KMTN 462
Cdd:pfam07195 227 KMNA 230
fliD PRK07737
flagellar hook-associated protein 2;
16-473 1.02e-36

flagellar hook-associated protein 2;


Pssm-ID: 236082 [Multi-domain]  Cd Length: 501  Bit Score: 141.48  E-value: 1.02e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961  16 DLYNQLDAAERTKLTTITSQQSTYNAQLSAYGKLQSAMTSLQTAT-AALGKATTWNSTSV-SSTNTAFTATTTADASVGS 93
Cdd:PRK07737   16 DIVSKLMKTERAPLDKLTQKKQTLEWQRDSYREMNTLLKDLDDYIfNNITRQSTYLKKTVtSSNESVVTATASSSAANGS 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961  94 FVVNVNQVAkaqalTTGSYANNTDLLGDTTG-TTRKITITQPGTKTP--LEVTLADGDTsLAGIASAINKANGNVTASVI 170
Cdd:PRK07737   96 TTMQVTQLA-----TAATWKSSAKTSFYTGAdQTLTFNVTNPGETTAktVEISVKQTDT-LDDVISKLNSSDLGVSAFKD 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 171 KAKDG-DY--RLMLSSKTTGTDGEMTISVTGD-DKLQNAIGYNSTTKTGALTVNTGAQNAIVVVNSISIERQTNTITdaL 246
Cdd:PRK07737  170 KIWNGtEYveTIAITSKATGAGASIQAADGATaSFFSQQLGFTNLDADNELTAKTEGQNAQVTINGLQTERTSNTFT--I 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 247 PGVTFSLKAESKADETLEVTRATDANQKAITDWVTAYNSLQSTINSLTK------YVPVDAGAGS-----------QSAS 309
Cdd:PRK07737  248 NGVTYTLKNTTAGTVTLSVATDVDGIFNKIKDFVDKYNELIDKINAKLKeeryrdYPPLTDEQKEamtekqielweEKAK 327

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 310 NGALVGDANVRGIQSQLR-GLLTEVQ---SGSVQImAQLGITQDPVKgSDGtvGNLKVDTDKLKKALTENPNAVQQYFVG 385
Cdd:PRK07737  328 SGLLRGDSILSSALSKMRmDFYTKVEgidGGFSQL-AQIGITTSSNY-LDG--GKLEIDETKLRQKIKENPDAVYQLFNS 403

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 386 DGKKT-----GMATQMNNTLTTMLSTSTGSAG--VIQNAKDGINKTLKTLGERYDAMEATIDATMARYKTQFTSLDVLVT 458
Cdd:PRK07737  404 GGSSSnynekGIARRLRDTLKETIKSIEQKAGntTMTNQQFAIGKDLNQIETQIDRFQDRLKQIEDRYYKKFSAMEKAIQ 483

                         490
                  ....*....|....*
gi 1541854961 459 KMTNTANYLTQQFSQ 473
Cdd:PRK07737  484 KANEQSMYLMNALGG 498
PRK12765 PRK12765
flagellar filament capping protein FliD;
3-395 7.47e-28

flagellar filament capping protein FliD;


Pssm-ID: 237194 [Multi-domain]  Cd Length: 595  Bit Score: 116.92  E-value: 7.47e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961   3 TISNLGIGSAGL--GDLYNQLDAAERT-KLTTITSQQSTYNAQLSAYGKLQSAMTSLQTATAALGKATTW-NSTSVSSTN 78
Cdd:PRK12765    5 SLSSLGFGSDGVlsQDTIDKLKEADQKaQIDPITTKIEENTTKQKDLTAIKTLLSNFKTSVSSLADETSYlKRKVSISDN 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961  79 TAFTATTTADASVGSFVVNVNQVAKAQALTTGSYANNTDLLGDTTGTTRKITITQPGTKTPLEVTLAdgdTSLAGIASAI 158
Cdd:PRK12765   85 PPASVTVNSGVNLQSMKINVSQLAQKDVYQSKGFANDSSFVNATLTGETDLTIFSNGKEYTITVDKS---TTYRDLADKI 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 159 NKA-NGNVTASVIK-AKDGDYRLMLSSKTTGTDGEMTISVTGD------------DKLQNAIGYNSTTKTGALTVNTG-- 222
Cdd:PRK12765  162 NEAsGGKIQAKILNvGGKNPYRLVLQSKETGADNAISFYAGKKdaqsdndaenifKSLGWDLDDTSTIDPGKDKKGYGik 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 223 --------AQNAIVVVNSISIERQTNTITDALPGVTFSLKAESKADetLEVTRATDANQKAITDWVTAYNSLQSTINSLT 294
Cdd:PRK12765  242 daslhiqtAQNAEFTYNGIKITRSSNTIDDLGVGVTLTLNKTGSIN--FDIQQDTEGVTKAVEDLVDAYNNLVTNLNAAT 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 295 KYvpvdagaGSQSASNGALVGDANVRGIQSQLR----GLLTEVQSGSVQIMAQLGITQDpvkgSDGTvgnLKVDTDKLKK 370
Cdd:PRK12765  320 SY-------NSETGTKGTFQGVSEITSIRSSILadlfSQVVDGTDEDGKSLQDFGLSLN----SDGT---LSFDSSKFEQ 385

                         410       420
                  ....*....|....*....|....*
gi 1541854961 371 ALTENPNAVQQYFVGDGKKTGMATQ 395
Cdd:PRK12765  386 KVSEDPDSTQSFFSGSTKYEDISHT 410
fliD PRK06664
flagellar hook-associated protein FliD; Validated
 186-467 1.74e-19

flagellar hook-associated protein FliD; Validated


Pssm-ID: 235848 [Multi-domain]  Cd Length: 661  Bit Score: 91.37  E-value: 1.74e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 186 TGTDGEMTISVT----GDDKLQNaIGYNSTTKT---------------GALTVN--TGAQNAIVVVNSISIERQTNTITD 244
Cdd:PRK06664  333 NASDNFEKVELPlgelSDLKALN-IENNANNKAivirnieifdpkargGALPVNakSEAKDAKIKFDGVEVERDKNEITD 411

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 245 ALPGVTFSLKAESKADETLEVTRATDANQKAITDWVTAYNSLQSTINSLT-----------KYVPvDAGAGSQSASNGAL 313
Cdd:PRK06664  412 LIPGVTLNLHKASEDPVTLKIEPDYEKIKNLIIEFVAAYNEVLAEINIVTsnekssiieelTYLS-DEEKEEAYKNLGLL 490

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 314 VGDANVRGIQSQLRGLLTEV----QSGSVQIMAQLGITQDPV--KGSDGTVGNLKVDTDKLKKALTENPNAVQQYFV--- 384
Cdd:PRK06664  491 RGEFTLLRLKSRLKTIISSSyptsDDNAFRMLNQIGISTNSVgsSGGLIQDGYLELDEKKLDEVLKENPDSVRELFAfds 570

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 385 -GDGK-KTGMATQMnntlTTMLSTSTGSAGVIQNAKDGINKTLKTLGERYDAMEATIDATMARYKTQFTSLDVLVTKMTN 462
Cdd:PRK06664  571 nGDAVmDNGVAKML----LEYLSPYTQAGGIIYNKVKGLDERIADNNKKIEEYEKKLESKERKLKGKYLTMDQTVKKMKE 646


                  ....*
gi 1541854961 463 TANYL 467
Cdd:PRK06664  647 QSNYL 651
fliD PRK06798
flagellar hook-associated protein 2;
27-385 2.68e-17

flagellar hook-associated protein 2;


Pssm-ID: 180698 [Multi-domain]  Cd Length: 440  Bit Score: 84.06  E-value: 2.68e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961  27 TKLTTITSQQSTYNAQLSAYGKLQSAMTSLQTATAALGKATTWNSTSVSSTNTAFTATttadasvGSFVVNVNQVAKAQA 106
Cdd:PRK06798   44 NQKQSLTSEKLLYASLKKEFSSFLQTFKDLTTFKGNEKKVTLSQEGYITVQADASAIA-------GTYNITVENLAQRHQ 116

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 107 LTTGSYANNTDLLGdtTGTTRKItitqpGTKtplEVTLaDGDTSLAGIASAINKANGNVTASVIKAKdgdyrLMLSSKTT 186
Cdd:PRK06798  117 ITSKPVPDIDAKIG--VDETIKI-----NGK---EIKV-TKDMTYKDLINKINSGNYGVSAYTLGNK-----IFFTSTTE 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 187 GTDGEMTIsVTGDDKLQNAIGYnSTTKTGALTVNTGAQNAIVVVNSISIERQTNTItDALPGVTFSLKAESKADETLEVT 266
Cdd:PRK06798  181 GEEGSIKF-TDGDSGFLEAIGL-VQSSGVAANDITAAENAEYTINGIKGTSATNKI-ETIPGVTINLKKETTEPIKLTIQ 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 267 RATDANQ-KAITDWVTAYNSLQSTinsltkyvpVDAGAGSqsasNGALVGDANVRGIQSQLRGLLTEVQSGSVQIMAQLG 345
Cdd:PRK06798  258 DSNVKDAaNLIKKMVDEYNKAVST---------VDLFAGK----GGALQGSAIMFSINRAMNNVFTFSQDGNYLFSFGIQ 324

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1541854961 346 ITQDpvkgsdgtvGNLKVDTDKLKKALTENPNAVQQYFVG 385
Cdd:PRK06798  325 VDKE---------GTMKVDEEALKKALKENPDAAKQFFFG 355
fliD PRK08453
flagellar filament capping protein FliD;
130-453 1.97e-13

flagellar filament capping protein FliD;


Pssm-ID: 181432 [Multi-domain]  Cd Length: 673  Bit Score: 72.56  E-value: 1.97e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 130 TITQPGTKTPLEVTLADGDTS---LAGIASAINKAngnvtASVIKAKDGDYRLMLSSKTtgtdGEMTISvtGDDKLQN-- 204
Cdd:PRK08453  334 VISIGGIKLDLSALTKEGNTSeenADAIAQAINAK-----AGLYAFKNAEGKLVINSKT----GMVTIK--GEDALGKks 402

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 205 --AIGYNSTTKTGALTVNT---------GAQNAIVVVNSISIERQTNTITDALPGVTFSLKAESKADE--TLEVTRATDA 271
Cdd:PRK08453  403 lkDLGLKAGTVQSYEASQEtlfmsknlqKASDAKFTYNGVSITRPTNEVNDVISGVNITLEQTTEPNKpaIISVSRDNQA 482

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 272 NQKAITDWVTAYNSLQSTINSLTKYvpvdagaGSQSASNGALVGDANVRGIQSQLRGLL-TEVQS-GSVQIMAQLGITQD 349
Cdd:PRK08453  483 IIDSLKEFVKAYNELIPKLDEDTRY-------DADTKIAGIFNGVGDIRSIRSSLNNVFsYSVHTdNGVESLMKYGLSLD 555

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 350 pvkgsdgTVGNLKVDTDKLKKALTENPNAVQQYFVGDGKKT---------GMATQMNNTLTTMLSTSTGSAGVIQNAKDG 420
Cdd:PRK08453  556 -------EKGVMTLDEAKLSSALNSDPKATQDFFYGSDSKDmggreihqeGIFSKFNQVIANLIDGGNAKLKIYEDSLTR 628

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 1541854961 421 INKTL--------KTLGERYDAME---ATIDATMARYKTQFTSL 453
Cdd:PRK08453  629 DAKSLtkdkenaqELLKTRYDIMAerfAAYDSQISKANQKFNSV 672
FliD_N pfam02465
Flagellar hook-associated protein 2 N-terminus; The flagellar hook-associated protein 2 (HAP2 ...
 16-105 5.01e-13

Flagellar hook-associated protein 2 N-terminus; The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria. This alignment covers the N-terminal region of this family of proteins.


Pssm-ID: 460566 [Multi-domain]  Cd Length: 97  Bit Score: 64.89  E-value: 5.01e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961  16 DLYNQLDAAERTKLTTITSQQSTYNAQLSAYGKLQSAMTSLQTATAALGKATTWNSTSVSSTNTAFTATTTADASV-GSF 94
Cdd:pfam02465   7 SIVDQLMAAERAPLDRLEQQKTTLEWKQSAYGELNSKLSSLQSALKALSSSSTFNAKKATSSNESVVTATASSGAAaGSY 86

                          90
                  ....*....|.
gi 1541854961  95 VVNVNQVAKAQ 105
Cdd:pfam02465  87 SIEVTQLAQAQ 97
fliD PRK08724
flagellar filament capping protein FliD;
223-460 3.76e-08

flagellar filament capping protein FliD;


Pssm-ID: 236335 [Multi-domain]  Cd Length: 673  Bit Score: 55.65  E-value: 3.76e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 223 AQNAIVVVNSIS-IERQTNTITDALPGVTFSLK---AESKADETLEVTRATDANQKAITDWVTAYNSLQSTINSLTKYVP 298
Cdd:PRK08724  438 AQDSMVVLDGVAqLSSNNNVIEDAIEGVDLTLKgktDKNKPPAEIGVEYDRQSVRNDIEQFVAAYNQFYQTSKALSGVDP 517

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 299 VdagagsqSASNGALVGDANVRGIQSQLRGLL-TEVQSG--SVQIMAQLGITQDpvkgsdgTVGNLKVDTDKLKKALTEN 375
Cdd:PRK08724  518 A-------TGQKGPLAGDSTVRSADSRLKSVFsSSIEQApeNLKSLTEFGITTT-------RQGTLEINYDMLDRQLNNN 583

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 376 PNAVQQYFvgdGKKTGMATQMNNtlttMLSTSTGSAGVIQNAKDGINKTLKTLGERYDAMEATIDATMARYKTQFTSLDV 455
Cdd:PRK08724  584 FNKLEEFF---GGNTGFAKRVED----AIQSMTGVTGSIRTREKSLREQNYRLNDDQVALDRRMESLEKRTHAKFAAMQD 656


                  ....*
gi 1541854961 456 LVTKM 460
Cdd:PRK08724  657 ATGKM 661
fliD PRK08724
flagellar filament capping protein FliD;
24-200 3.77e-06

flagellar filament capping protein FliD;


Pssm-ID: 236335 [Multi-domain]  Cd Length: 673  Bit Score: 49.48  E-value: 3.77e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961  24 AERT-KLTTITSQQSTYNAQLSAYGKLQSAMTSLQTATAALGKATTWNSTSVSSTNTAFTATTTADASV-GSFVVNVNQV 101
Cdd:PRK08724   24 AERVpKQQRIDNERTDIDTSISAYGRLRESLDTMKNLMTNFRQEKAFAVRTVDTSDEDVVSATATTDAIaGKYAIDVLQL 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1541854961 102 AKAQALTTGSyanntdLLGDTTGTTRKITITQPGTKTPLEVTladGDTSLAGIASAINKANGN--VTASVIKAKDGDyRL 179
Cdd:PRK08724  104 AQSHKVASDV------LDEDAKFGPGKLQISLGDKSFTLDVV---GNSKLVDIVRGINGAKSNpgVRASIINDVEGP-RL 173

                         170       180
                  ....*....|....*....|.
gi 1541854961 180 MLSSKTTGTDGEMTISVTGDD 200
Cdd:PRK08724  174 ILASNVSGKDNQIKISVDAEY 194
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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