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Conserved domains on  [gi|1541472784|gb|RTM18192|]
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septal ring assembly protein ZapB [Enterobacter bugandensis]

Protein Classification

upstream stimulatory factor 2( domain architecture ID 10015110)

upstream stimulatory factor 2 (USF2) acts as transcription factor that binds to a symmetrical DNA sequence (E-boxes) (5'-CACGTG-3') that is found in a variety of viral and cellular promoters

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK15422 PRK15422
septal ring assembly protein ZapB; Provisional
 1-79 1.03e-26

septal ring assembly protein ZapB; Provisional


:

Pssm-ID: 185320 [Multi-domain]  Cd Length: 79  Bit Score: 92.84  E-value: 1.03e-26
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1541472784  1 MSLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLAQEVQNAQHGREELERENNQLREQQNGWQDRLQALLGRMEEV 79
Cdd:PRK15422   1 MSLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRMEEV 79
 
Name Accession Description Interval E-value
PRK15422 PRK15422
septal ring assembly protein ZapB; Provisional
 1-79 1.03e-26

septal ring assembly protein ZapB; Provisional


Pssm-ID: 185320 [Multi-domain]  Cd Length: 79  Bit Score: 92.84  E-value: 1.03e-26
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1541472784  1 MSLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLAQEVQNAQHGREELERENNQLREQQNGWQDRLQALLGRMEEV 79
Cdd:PRK15422   1 MSLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRMEEV 79
ZapB COG3074
Cell division protein ZapB, interacts with FtsZ [Cell cycle control, cell division, chromosome ...
 1-79 1.77e-18

Cell division protein ZapB, interacts with FtsZ [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442308 [Multi-domain]  Cd Length: 79  Bit Score: 71.93  E-value: 1.77e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1541472784  1 MSLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLAQEVQNAQHGREELERENNQLREQQNGWQDRLQALLGRMEEV 79
Cdd:COG3074    1 MSLELLEELEAKVQQAVDTIELLQMEVEELKEKNEELEQENEELQSENEELQSENEQLKTENAEWQERIRSLLGKIDEV 79
ZapB pfam06005
Cell division protein ZapB; ZapB is a non-essential, abundant cell division factor that is ...
 1-78 1.57e-13

Cell division protein ZapB; ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation.


Pssm-ID: 428718 [Multi-domain]  Cd Length: 71  Bit Score: 59.20  E-value: 1.57e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1541472784  1 MSLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLAQEvqnaqhgREELERENNQLREQQNGWQDRLQALLGRMEE 78
Cdd:pfam06005  1 MSLELLEQLETKIQAAVDTIALLQMENEELKEENEELKEE-------ANELEEENQQLKQERNQWQERIRGLLGKLDE 71
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 4-72 8.09e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 33.11  E-value: 8.09e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1541472784    4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLAQEVQNAQHGREELERENNQLREQQNGWQDRLQAL 72
Cdd:TIGR02168  733 KDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKAL 801
 
Name Accession Description Interval E-value
PRK15422 PRK15422
septal ring assembly protein ZapB; Provisional
 1-79 1.03e-26

septal ring assembly protein ZapB; Provisional


Pssm-ID: 185320 [Multi-domain]  Cd Length: 79  Bit Score: 92.84  E-value: 1.03e-26
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1541472784  1 MSLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLAQEVQNAQHGREELERENNQLREQQNGWQDRLQALLGRMEEV 79
Cdd:PRK15422   1 MSLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRMEEV 79
ZapB COG3074
Cell division protein ZapB, interacts with FtsZ [Cell cycle control, cell division, chromosome ...
 1-79 1.77e-18

Cell division protein ZapB, interacts with FtsZ [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442308 [Multi-domain]  Cd Length: 79  Bit Score: 71.93  E-value: 1.77e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1541472784  1 MSLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLAQEVQNAQHGREELERENNQLREQQNGWQDRLQALLGRMEEV 79
Cdd:COG3074    1 MSLELLEELEAKVQQAVDTIELLQMEVEELKEKNEELEQENEELQSENEELQSENEQLKTENAEWQERIRSLLGKIDEV 79
ZapB pfam06005
Cell division protein ZapB; ZapB is a non-essential, abundant cell division factor that is ...
 1-78 1.57e-13

Cell division protein ZapB; ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation.


Pssm-ID: 428718 [Multi-domain]  Cd Length: 71  Bit Score: 59.20  E-value: 1.57e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1541472784  1 MSLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLAQEvqnaqhgREELERENNQLREQQNGWQDRLQALLGRMEE 78
Cdd:pfam06005  1 MSLELLEQLETKIQAAVDTIALLQMENEELKEENEELKEE-------ANELEEENQQLKQERNQWQERIRGLLGKLDE 71
MreC COG1792
Cell shape-determining protein MreC [Cell cycle control, cell division, chromosome ...
 13-63 4.51e-05

Cell shape-determining protein MreC [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 441397  Cd Length: 282  Bit Score: 39.48  E-value: 4.51e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1541472784  13 VQQAIDTITLLQMEIEELKEKNNSLAQEVQNAqhgrEELERENNQLREQQN 63
Cdd:COG1792    63 VSDNFRSLFNLREENERLKEENAELRAELQRL----EELEAENARLRELLD 109
PRK13922 PRK13922
rod shape-determining protein MreC; Provisional
 5-61 4.70e-04

rod shape-determining protein MreC; Provisional


Pssm-ID: 237560  Cd Length: 276  Bit Score: 36.49  E-value: 4.70e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1541472784   5 VFEKLEAKVQQAIDtITLLQMEIEELKEKNNSLAQEVQNAQhgreELERENNQLREQ 61
Cdd:PRK13922   57 PREFVSGVFESLAS-LFDLREENEELKKELLELESRLQELE----QLEAENARLREL 108
PRK11281 PRK11281
mechanosensitive channel MscK;
7-69 7.86e-03

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 33.35  E-value: 7.86e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1541472784    7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLAQEvQNAQHGREELERENNQLREQQNGWQDRL 69
Cdd:PRK11281    83 EQLKQQLAQAPAKLRQAQAELEALKDDNDEETRE-TLSTLSLRQLESRLAQTLDQLQNAQNDL 144
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 4-72 8.09e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 33.11  E-value: 8.09e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1541472784    4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLAQEVQNAQHGREELERENNQLREQQNGWQDRLQAL 72
Cdd:TIGR02168  733 KDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKAL 801
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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