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Conserved domains on  [gi|1537357017|gb|RSW07972|]
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hypothetical protein EGH52_00995 [Klebsiella aerogenes]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FidL_like super family cl24495
FidL-like putative membrane protein; FidL-like is a family of bacterial proteins that are ...
 79-165 1.24e-03

FidL-like putative membrane protein; FidL-like is a family of bacterial proteins that are purported to be membrane proteins.


The actual alignment was detected with superfamily member pfam15941:

Pssm-ID: 435032  Cd Length: 90  Bit Score: 36.35  E-value: 1.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1537357017  79 GKLKSDDGEFAVNRKLFFRYAR-PLGHTAGVFMLTPEGREKSPDDNATDAV-DYLFFDAYEHADKLYM-LKRLNEETVLI 155
Cdd:pfam15941   1 GYTDSNAKGNYLQRYVLFSYSSiRESATKDTYRITIWQINISSIDNTPDVIfDYFLREMSDSGDGLLLsAKKLDDNALLL 80

                          90
                  ....*....|
gi 1537357017 156 GDNFSPRFAC 165
Cdd:pfam15941  81 SSINSPLFIC 90
 
Name Accession Description Interval E-value
FidL_like pfam15941
FidL-like putative membrane protein; FidL-like is a family of bacterial proteins that are ...
 79-165 1.24e-03

FidL-like putative membrane protein; FidL-like is a family of bacterial proteins that are purported to be membrane proteins.


Pssm-ID: 435032  Cd Length: 90  Bit Score: 36.35  E-value: 1.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1537357017  79 GKLKSDDGEFAVNRKLFFRYAR-PLGHTAGVFMLTPEGREKSPDDNATDAV-DYLFFDAYEHADKLYM-LKRLNEETVLI 155
Cdd:pfam15941   1 GYTDSNAKGNYLQRYVLFSYSSiRESATKDTYRITIWQINISSIDNTPDVIfDYFLREMSDSGDGLLLsAKKLDDNALLL 80

                          90
                  ....*....|
gi 1537357017 156 GDNFSPRFAC 165
Cdd:pfam15941  81 SSINSPLFIC 90
 
Name Accession Description Interval E-value
FidL_like pfam15941
FidL-like putative membrane protein; FidL-like is a family of bacterial proteins that are ...
 79-165 1.24e-03

FidL-like putative membrane protein; FidL-like is a family of bacterial proteins that are purported to be membrane proteins.


Pssm-ID: 435032  Cd Length: 90  Bit Score: 36.35  E-value: 1.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1537357017  79 GKLKSDDGEFAVNRKLFFRYAR-PLGHTAGVFMLTPEGREKSPDDNATDAV-DYLFFDAYEHADKLYM-LKRLNEETVLI 155
Cdd:pfam15941   1 GYTDSNAKGNYLQRYVLFSYSSiRESATKDTYRITIWQINISSIDNTPDVIfDYFLREMSDSGDGLLLsAKKLDDNALLL 80

                          90
                  ....*....|
gi 1537357017 156 GDNFSPRFAC 165
Cdd:pfam15941  81 SSINSPLFIC 90
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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