|
Name |
Accession |
Description |
Interval |
E-value |
| PRK06596 |
PRK06596 |
RNA polymerase factor sigma-32; Reviewed |
1-284 |
2.44e-170 |
|
RNA polymerase factor sigma-32; Reviewed
Pssm-ID: 235838 [Multi-domain] Cd Length: 284 Bit Score: 472.35 E-value: 2.44e-170
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 1 MNNAFALPAIqSGNGSLEQYIHTVNSIPMLSQEEETRLAER-RIKGDLNAAKQLILSHLRVVVSIARGYDGYGLNQADLI 79
Cdd:PRK06596 1 MTKALQLLAL-SPEGNLDAYIQAVNKIPMLTAEEEYMLAKRlREHGDLEAAKQLVLSHLRFVVHIARGYRGYGLPQADLI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 80 QEGNIGLMKAVKRYEPGRGARLFSFAVHWIKAEIHEFILRNWRLVRVATTKPQRKLFFNLRSMRKNLNALSPKEAQDIAD 159
Cdd:PRK06596 80 QEGNIGLMKAVKRFDPEVGVRLVSFAVHWIKAEIHEYILRNWRIVKVATTKAQRKLFFNLRKAKKRLGWLNPEEVEMVAE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 160 DLGVKLSEVLEMEQRMTGHDIAIMA-DNSDDEDSFAPIDWLADHDSEPSRQLSKQAHYALQTEGLQNALAQLDDRSRRIV 238
Cdd:PRK06596 160 ELGVSEEEVREMESRLSGQDASLDApIDDDDEESGAPQDYLEDKSSDPADVLEEDNWEDQRRALLADALEGLDERSRDII 239
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1518349244 239 ESRWLQDDgGLTLHQLAAEYGVSAERIRQIEAKAMQKLRGFLTEEA 284
Cdd:PRK06596 240 EARWLDDD-KSTLQELAAEYGVSAERVRQIEKNAMKKLKAAIEAAA 284
|
|
| rpoH_proteo |
TIGR02392 |
alternative sigma factor RpoH; A sigma factor is a DNA-binding protein protein that binds to ... |
15-281 |
5.69e-160 |
|
alternative sigma factor RpoH; A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called RpoH and further restricted to the Proteobacteria. This protein may be called sigma-32, sigma factor H, heat shock sigma factor, and alternative sigma factor RpoH. Note that in some species the single locus rpoH may be replaced by two or more differentially regulated stress response sigma factors. [Cellular processes, Adaptations to atypical conditions, Transcription, Transcription factors]
Pssm-ID: 274107 [Multi-domain] Cd Length: 270 Bit Score: 445.57 E-value: 5.69e-160
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 15 GSLEQYIHTVNSIPMLSQEEETRLAER-RIKGDLNAAKQLILSHLRVVVSIARGYDGYGLNQADLIQEGNIGLMKAVKRY 93
Cdd:TIGR02392 1 GSLDAYIRAVNRIPMLTPEEEYQLAKRlREHGDLDAAKKLVLSHLRFVVKIARGYRGYGLPQADLIQEGNIGLMKAVKRF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 94 EPGRGARLFSFAVHWIKAEIHEFILRNWRLVRVATTKPQRKLFFNLRSMRKNLNA-LSPKEAQDIADDLGVKLSEVLEME 172
Cdd:TIGR02392 81 DPERGVRLVSFAVHWIKAEIHEYILRNWRLVKVATTKAQRKLFFNLRKMKKRLQGwLNPEEVEAIAEELGVSEREVREME 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 173 QRMTGHDIAIMADNSDDEDSF-APIDWLADHDSEPSRQLSKQAHYALQTEGLQNALAQLDDRSRRIVESRWLQDDgGLTL 251
Cdd:TIGR02392 161 SRLSGQDMSLNASIDDDEDDGgAPIAYLVDKRSDPEDTLEEEQWEELQRQALANALGSLDARSRRIIEARWLDDD-KLTL 239
|
250 260 270
....*....|....*....|....*....|
gi 1518349244 252 HQLAAEYGVSAERIRQIEAKAMQKLRGFLT 281
Cdd:TIGR02392 240 QELAAEYGVSAERIRQIEKNAMKKLKAALA 269
|
|
| RpoD |
COG0568 |
DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription]; DNA-directed RNA ... |
19-284 |
2.66e-104 |
|
DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription]; DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 440334 [Multi-domain] Cd Length: 268 Bit Score: 304.67 E-value: 2.66e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 19 QYIHTVNSIPMLSQEEETRLAERRIKGDLNAAKQLILSHLRVVVSIARGYDGYGLNQADLIQEGNIGLMKAVKRYEPGRG 98
Cdd:COG0568 1 AYLREIGRVPLLTAEEEVELARRIQAGDEEAKRKLVEANLRLVVSIAKKYQGRGLPLLDLIQEGNLGLMKAVEKFDPERG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 99 ARLFSFAVHWIKAEIHEFILRNWRLVRVATTKPQ--RKlffnLRSMRKNLNA--LSPKEAQDIADDLGVKLSEVLEMEqR 174
Cdd:COG0568 81 FRFSTYATWWIRQAITRAIADQWRTIRLPVHMAEtlNK----LRRAKRQLLQelGREPTPEEIAEELGVPEEKVREML-R 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 175 MTGHDIAIMADNSDDEDSfAPIDWLADHDSE-PSRQLSKQahyaLQTEGLQNALAQLDDRSRRIVESRWLQDDG-GLTLH 252
Cdd:COG0568 156 LAREPVSLDAPVGDDEDS-ELGDLLEDEEAPsPEEALEEE----LLREELREALDTLTEREREILRLRFGLDDGePHTLE 230
|
250 260 270
....*....|....*....|....*....|..
gi 1518349244 253 QLAAEYGVSAERIRQIEAKAMQKLRGFLTEEA 284
Cdd:COG0568 231 EIGKEFGVSRERVRQIEAKALRKLRHPLRSRK 262
|
|
| Sigma70_r2 |
pfam04542 |
Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. ... |
53-122 |
5.11e-16 |
|
Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. All members of this class of sigma-factor contain region 2. The high conservation is due to region 2 containing both the -10 promoter recognition helix and the primary core RNA polymerase binding determinant. The core binding helix, interacts with the clamp domain of the largest polymerase subunit, beta prime. The aromatic residues of the recognition helix, found at the C-terminus of this domain are though to mediate strand separation, thereby allowing transcription initiation.
Pssm-ID: 427998 [Multi-domain] Cd Length: 71 Bit Score: 71.08 E-value: 5.11e-16
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 53 LILSHLRVVVSIARGYDGYGLNQADLIQEGNIGLMKAVKRYEPGRGARLFSFAVHWIKAEIHEFILRNWR 122
Cdd:pfam04542 1 LVERYLPLVYSLARRYLGDGADAEDLVQEGFLGLWRAIERFDPERGVSFSTWLYTIIRNAIIDYLRKQRR 70
|
|
| Sigma70_r4 |
cd06171 |
Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in ... |
223-277 |
9.20e-10 |
|
Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplasmic stress and pathogenesis. Ec sigmaE SR4 also contacts the -35 element, but recognizes a different consensus (a 7-base-pair GGAACTT). Plant SFs recognize sigma70 type promoters and direct transcription of the major plastid RNA polymerase, plastid-encoded RNA polymerase (PEP).
Pssm-ID: 100119 [Multi-domain] Cd Length: 55 Bit Score: 53.26 E-value: 9.20e-10
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1518349244 223 LQNALAQLDDRSRRIVESRWLQddgGLTLHQLAAEYGVSAERIRQIEAKAMQKLR 277
Cdd:cd06171 4 LEEALDKLPEREREVILLRFGE---GLSYEEIAEILGISRSTVRQRLHRALKKLR 55
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK06596 |
PRK06596 |
RNA polymerase factor sigma-32; Reviewed |
1-284 |
2.44e-170 |
|
RNA polymerase factor sigma-32; Reviewed
Pssm-ID: 235838 [Multi-domain] Cd Length: 284 Bit Score: 472.35 E-value: 2.44e-170
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 1 MNNAFALPAIqSGNGSLEQYIHTVNSIPMLSQEEETRLAER-RIKGDLNAAKQLILSHLRVVVSIARGYDGYGLNQADLI 79
Cdd:PRK06596 1 MTKALQLLAL-SPEGNLDAYIQAVNKIPMLTAEEEYMLAKRlREHGDLEAAKQLVLSHLRFVVHIARGYRGYGLPQADLI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 80 QEGNIGLMKAVKRYEPGRGARLFSFAVHWIKAEIHEFILRNWRLVRVATTKPQRKLFFNLRSMRKNLNALSPKEAQDIAD 159
Cdd:PRK06596 80 QEGNIGLMKAVKRFDPEVGVRLVSFAVHWIKAEIHEYILRNWRIVKVATTKAQRKLFFNLRKAKKRLGWLNPEEVEMVAE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 160 DLGVKLSEVLEMEQRMTGHDIAIMA-DNSDDEDSFAPIDWLADHDSEPSRQLSKQAHYALQTEGLQNALAQLDDRSRRIV 238
Cdd:PRK06596 160 ELGVSEEEVREMESRLSGQDASLDApIDDDDEESGAPQDYLEDKSSDPADVLEEDNWEDQRRALLADALEGLDERSRDII 239
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1518349244 239 ESRWLQDDgGLTLHQLAAEYGVSAERIRQIEAKAMQKLRGFLTEEA 284
Cdd:PRK06596 240 EARWLDDD-KSTLQELAAEYGVSAERVRQIEKNAMKKLKAAIEAAA 284
|
|
| rpoH_proteo |
TIGR02392 |
alternative sigma factor RpoH; A sigma factor is a DNA-binding protein protein that binds to ... |
15-281 |
5.69e-160 |
|
alternative sigma factor RpoH; A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called RpoH and further restricted to the Proteobacteria. This protein may be called sigma-32, sigma factor H, heat shock sigma factor, and alternative sigma factor RpoH. Note that in some species the single locus rpoH may be replaced by two or more differentially regulated stress response sigma factors. [Cellular processes, Adaptations to atypical conditions, Transcription, Transcription factors]
Pssm-ID: 274107 [Multi-domain] Cd Length: 270 Bit Score: 445.57 E-value: 5.69e-160
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 15 GSLEQYIHTVNSIPMLSQEEETRLAER-RIKGDLNAAKQLILSHLRVVVSIARGYDGYGLNQADLIQEGNIGLMKAVKRY 93
Cdd:TIGR02392 1 GSLDAYIRAVNRIPMLTPEEEYQLAKRlREHGDLDAAKKLVLSHLRFVVKIARGYRGYGLPQADLIQEGNIGLMKAVKRF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 94 EPGRGARLFSFAVHWIKAEIHEFILRNWRLVRVATTKPQRKLFFNLRSMRKNLNA-LSPKEAQDIADDLGVKLSEVLEME 172
Cdd:TIGR02392 81 DPERGVRLVSFAVHWIKAEIHEYILRNWRLVKVATTKAQRKLFFNLRKMKKRLQGwLNPEEVEAIAEELGVSEREVREME 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 173 QRMTGHDIAIMADNSDDEDSF-APIDWLADHDSEPSRQLSKQAHYALQTEGLQNALAQLDDRSRRIVESRWLQDDgGLTL 251
Cdd:TIGR02392 161 SRLSGQDMSLNASIDDDEDDGgAPIAYLVDKRSDPEDTLEEEQWEELQRQALANALGSLDARSRRIIEARWLDDD-KLTL 239
|
250 260 270
....*....|....*....|....*....|
gi 1518349244 252 HQLAAEYGVSAERIRQIEAKAMQKLRGFLT 281
Cdd:TIGR02392 240 QELAAEYGVSAERIRQIEKNAMKKLKAALA 269
|
|
| RpoD |
COG0568 |
DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription]; DNA-directed RNA ... |
19-284 |
2.66e-104 |
|
DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription]; DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 440334 [Multi-domain] Cd Length: 268 Bit Score: 304.67 E-value: 2.66e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 19 QYIHTVNSIPMLSQEEETRLAERRIKGDLNAAKQLILSHLRVVVSIARGYDGYGLNQADLIQEGNIGLMKAVKRYEPGRG 98
Cdd:COG0568 1 AYLREIGRVPLLTAEEEVELARRIQAGDEEAKRKLVEANLRLVVSIAKKYQGRGLPLLDLIQEGNLGLMKAVEKFDPERG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 99 ARLFSFAVHWIKAEIHEFILRNWRLVRVATTKPQ--RKlffnLRSMRKNLNA--LSPKEAQDIADDLGVKLSEVLEMEqR 174
Cdd:COG0568 81 FRFSTYATWWIRQAITRAIADQWRTIRLPVHMAEtlNK----LRRAKRQLLQelGREPTPEEIAEELGVPEEKVREML-R 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 175 MTGHDIAIMADNSDDEDSfAPIDWLADHDSE-PSRQLSKQahyaLQTEGLQNALAQLDDRSRRIVESRWLQDDG-GLTLH 252
Cdd:COG0568 156 LAREPVSLDAPVGDDEDS-ELGDLLEDEEAPsPEEALEEE----LLREELREALDTLTEREREILRLRFGLDDGePHTLE 230
|
250 260 270
....*....|....*....|....*....|..
gi 1518349244 253 QLAAEYGVSAERIRQIEAKAMQKLRGFLTEEA 284
Cdd:COG0568 231 EIGKEFGVSRERVRQIEAKALRKLRHPLRSRK 262
|
|
| rpoH2 |
PRK07500 |
RNA polymerase factor sigma-32; Reviewed |
28-287 |
3.90e-67 |
|
RNA polymerase factor sigma-32; Reviewed
Pssm-ID: 236033 [Multi-domain] Cd Length: 289 Bit Score: 210.66 E-value: 3.90e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 28 PMLSQEEETRLAER-RIKGDLNAAKQLILSHLRVVVSIARGYDGYGLNQADLIQEGNIGLMKAVKRYEPGRGARLFSFAV 106
Cdd:PRK07500 19 PYLEREEEHALAYRwKDHRDEDALHRIISAHMRLVISMAGKFRRFGLPMNDLIQEGYVGLLEAAARFEPDREVRFSTYAT 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 107 HWIKAEIHEFILRNWRLVRVATTKPQRKLFFNLRSMRKNL----NALSPKEA-QDIADDLGVKLSEVLEMEQRMTGHDIA 181
Cdd:PRK07500 99 WWIRASIQDYILRNWSIVRGGTSSAQKALFFNLRRLRARLaqadEELTKQEIhREIATALGVSLSDVEMMDARLSGPDAS 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 182 IMAD-NSDDEDSFAPIDWLADHDSEPSRQLSKQAHYALQTEGLQNALAQLDDRSRRIVESRWLQDDGGlTLHQLAAEYGV 260
Cdd:PRK07500 179 LNAPqSEEDEGRSERMDFLVDDSPLPDEQVESSIDGERRRRWLTQALQTLNERELRIIRERRLREDGA-TLEALGEELGI 257
|
250 260
....*....|....*....|....*..
gi 1518349244 261 SAERIRQIEAKAMQKLRGFLTEEAEAV 287
Cdd:PRK07500 258 SKERVRQIEARALEKLRRALLSQSPEV 284
|
|
| PRK09210 |
PRK09210 |
RNA polymerase sigma factor RpoD; Validated |
20-277 |
5.22e-35 |
|
RNA polymerase sigma factor RpoD; Validated
Pssm-ID: 236413 [Multi-domain] Cd Length: 367 Bit Score: 129.33 E-value: 5.22e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 20 YIHTVNSIPMLSQEEETRLAERRIKGDLNAAKQLILSHLRVVVSIARGYDGYGLNQADLIQEGNIGLMKAVKRYEPGRGA 99
Cdd:PRK09210 101 YLKEIGRVPLLTAEEEIELAKRIEEGDEEAKQRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDYRKGF 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 100 RLFSFAVHWIKAEIHEFILRNWRLVR--VATTKPQRKLffnLRSMRKNLNAL----SPKEaqdIADDLGV---KLSEVLE 170
Cdd:PRK09210 181 KFSTYATWWIRQAITRAIADQARTIRipVHMVETINKL---IRVQRQLLQELgrepTPEE---IAEEMDMppeKVREILK 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 171 MEQRMTGHDIAImadnSDDEDSFAPiDWLADHDSEPSrqlSKQAHYALQTEGLQNALAQLDDRSRRIVESRWLQDDGGL- 249
Cdd:PRK09210 255 IAQEPVSLETPI----GEEDDSHLG-DFIEDQDATSP---ADHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTr 326
|
250 260
....*....|....*....|....*...
gi 1518349244 250 TLHQLAAEYGVSAERIRQIEAKAMQKLR 277
Cdd:PRK09210 327 TLEEVGKVFGVTRERIRQIEAKALRKLR 354
|
|
| PRK05657 |
PRK05657 |
RNA polymerase sigma factor RpoS; Validated |
22-280 |
1.43e-32 |
|
RNA polymerase sigma factor RpoS; Validated
Pssm-ID: 235548 [Multi-domain] Cd Length: 325 Bit Score: 121.99 E-value: 1.43e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 22 HTVNSI---PMLSQEEETRLAERRIKGDLNAAKQLILSHLRVVVSIARGYDGYGLNQADLIQEGNIGLMKAVKRYEPGRG 98
Cdd:PRK05657 57 LYLNEIgysPLLTAEEEVYFARRALRGDFAARQRMIESNLRLVVKIAKRYLNRGLALLDLIEEGNLGLIRAVEKFDPERG 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 99 ARLFSFAVHWIKAEIHEFILRNWRLVRVattkPQ---RKLFFNLRSMRkNLNALSPKEA--QDIADDLGVKLSEV---LE 170
Cdd:PRK05657 137 FRFSTYATWWIRQTIERAIMNQTRTIRL----PVhvvKELNVYLRAAR-ELEHKLDHEPsaEEIAELLDKPVDDVsrmLA 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 171 MEQRMTGHDIAImadnsdDEDSFAPI-DWLAD-HDSEPSRQLskqAHYALQTEgLQNALAQLDDRSRRIVESRW-LQDDG 247
Cdd:PRK05657 212 LNERITSLDTPL------GGDPEKSLlDILADeQENGPEDTT---QDDDMKQS-IVKWLFELNDKQREVLARRFgLLGYE 281
|
250 260 270
....*....|....*....|....*....|...
gi 1518349244 248 GLTLHQLAAEYGVSAERIRQIEAKAMQKLRGFL 280
Cdd:PRK05657 282 AATLEDVAREIGLTRERVRQIQVEALRRLREIL 314
|
|
| FliA |
COG1191 |
DNA-directed RNA polymerase specialized sigma subunit [Transcription]; DNA-directed RNA ... |
34-282 |
1.42e-30 |
|
DNA-directed RNA polymerase specialized sigma subunit [Transcription]; DNA-directed RNA polymerase specialized sigma subunit is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 440804 [Multi-domain] Cd Length: 236 Bit Score: 114.54 E-value: 1.42e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 34 EETRLAERRIKGDLNAAKQLILSHLRVVVSIARGYDG-YGLNQADLIQEGNIGLMKAVKRYEPGRGARLFSFAVHWIKAE 112
Cdd:COG1191 1 DLEELLRRYQEGDEEAREELIEEYLPLVKKIASRLAGrLPAELDDLIQVGLIGLIEAIDRFDPSKGVSFETYAVPRIRGA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 113 I-HEFILRNWRLVRVattkpqRKLFFNLRSMRKNL---NALSPKEAQdIADDLGVKLSEVLEMEQRMTGHDIAIMADNSD 188
Cdd:COG1191 81 IlDYLRDEDWVPRSV------RELARKIEEAIEELeqeLGREPTDEE-IAEELGISLEEVQEALEAANAYQLLSLDEPLE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 189 DEDSFAPIDWLADHDSEPSRQLSKQAhyalqtegLQNALAQLDDRSRRIVESRWLQDdggLTLHQLAAEYGVSAERIRQI 268
Cdd:COG1191 154 DGDDLLDLLESGDPEEELEHEELREA--------LAEAIEQLPERERLVLSLYYFEE---LTLKEIAEVLGVSESRVSRL 222
|
250
....*....|....
gi 1518349244 269 EAKAMQKLRGFLTE 282
Cdd:COG1191 223 HKKALARLREYLKE 236
|
|
| PRK05901 |
PRK05901 |
RNA polymerase sigma factor; Provisional |
28-277 |
3.28e-25 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 235640 [Multi-domain] Cd Length: 509 Bit Score: 104.31 E-value: 3.28e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 28 PMLSQEEETRLAERrIKGDLNA---------------------------AK-QLILSHLRVVVSIARGYDGYGLNQADLI 79
Cdd:PRK05901 224 KLLNAEEEVELAKR-IEAGLYAeellaegekldpelrrdlqwigrdgkrAKnHLLEANLRLVVSLAKRYTNRGLSFLDLI 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 80 QEGNIGLMKAVKRYEPGRGARlFS-FAVHWIKAEIHEFILRNWRLVR-----VAT----TKPQRKLffnlrsmrknLNAL 149
Cdd:PRK05901 303 QEGNLGLIKAVEKFDYTKGYK-FStYATWWIRQAITRAMADQARTIRipvhmVETinklGRIEREL----------LQEL 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 150 ----SPKEaqdIADDLGVKLSEVLEMeQRMTGHDIAIMADNSDDEDSFapidwLAD--HDSE---PS-----RQLSKQAH 215
Cdd:PRK05901 372 grepTPEE---LAKEMGFTPEKVREI-QKYNREPISLDKTIGKEGDSQ-----FGDfiEDSEavsPVdavsfTLLQDQLQ 442
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1518349244 216 YALQTeglqnalaqLDDRSRRIVESRW-LQDDGGLTLHQLAAEYGVSAERIRQIEAKAMQKLR 277
Cdd:PRK05901 443 EVLET---------LSEREAGVIRMRFgLTDGQPKTLDEIGQVYGVTRERIRQIESKTLRKLR 496
|
|
| PRK07921 |
PRK07921 |
RNA polymerase sigma factor SigB; Reviewed |
33-277 |
3.98e-23 |
|
RNA polymerase sigma factor SigB; Reviewed
Pssm-ID: 181169 [Multi-domain] Cd Length: 324 Bit Score: 96.72 E-value: 3.98e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 33 EEETRLAERRiKGDL-------NAAKQ-LILSHLRVVVSIARGYDGYGLNQADLIQEGNIGLMKAVKRYEPGRGARLFSF 104
Cdd:PRK07921 64 ETRKRLSEAR-KRDLaavvrdgEAARRhLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTY 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 105 AVHWIKAEIHEFILRNWRLVR--VATTKPQRKLFFNLRSMRKNLNalspKEAQD--IADDLGV---KLSEVLEMEQRMTG 177
Cdd:PRK07921 143 ATWWIRQAITRGMADQSRTIRlpVHLVEQVNKLARIKRELHQQLG----REATDeeLAEESGIpeeKIADLLEHSRDPVS 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 178 HDiaiMADNSDDEdsfAPI-DWLAdhDSEPSRQLSKQAHYALQTEgLQNALAQLDDRSRRIVESRWLQDDG-GLTLHQLA 255
Cdd:PRK07921 219 LD---MPVGSDEE---APLgDFIE--DSEATSAENAVIAGLLHTD-IRSVLATLDEREQQVIRLRFGLDDGqPRTLDQIG 289
|
250 260
....*....|....*....|..
gi 1518349244 256 AEYGVSAERIRQIEAKAMQKLR 277
Cdd:PRK07921 290 KLFGLSRERVRQIEREVMSKLR 311
|
|
| PRK07598 |
PRK07598 |
RNA polymerase sigma factor SigC; Validated |
40-277 |
1.12e-21 |
|
RNA polymerase sigma factor SigC; Validated
Pssm-ID: 236067 [Multi-domain] Cd Length: 415 Bit Score: 93.78 E-value: 1.12e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 40 ERRIKGDLNAAKQLILSHLRVVVSIARGYDGYGLNQADLIQEGNIGLMKAVKRYEPGRGARLFSFAVHWIKAEIHEFILR 119
Cdd:PRK07598 167 EQIQKQGLRAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIAT 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 120 NWRLVR--VATT-------KPQRKLffnlrSMRKNLNAlspkEAQDIADDLGVKLSEVLEMEQRMTgHDIAIMADNSDDE 190
Cdd:PRK07598 247 QSRTIRlpVHITeklnkikKAQRKI-----SQEKGRTP----TIEDIAQELEMTPTQVREVLLRVP-RSVSLETKVGKDK 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 191 DSfAPIDWLADHDSEPSRQLSKQahyALQTEgLQNALAQLDDRSRRIVESRW-LQDDGGLTLHQLAAEYGVSAERIRQIE 269
Cdd:PRK07598 317 DT-ELGDLLETDDISPEEMLMRE---SLQRD-LQHLLADLTSRERDVIRMRFgLADGHTYSLAEIGRALDLSRERVRQIE 391
|
....*...
gi 1518349244 270 AKAMQKLR 277
Cdd:PRK07598 392 SKALQKLR 399
|
|
| PRK07406 |
PRK07406 |
RNA polymerase sigma factor RpoD; Validated |
41-277 |
1.60e-21 |
|
RNA polymerase sigma factor RpoD; Validated
Pssm-ID: 236012 [Multi-domain] Cd Length: 373 Bit Score: 92.92 E-value: 1.60e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 41 RRIKGDLNAAKQLILSHLRVVVSIARGYDGYGLNQADLIQEGNIGLMKAVKRYEPGRGARLFSFAVHWIKAEIHEFILRN 120
Cdd:PRK07406 129 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQ 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 121 WRLVRVATtkpqrKLFFNLRSMRKNLNALSpkeaqdiaDDLGVKLSEVlEMEQR--MTGHDIAIMADNSD---------- 188
Cdd:PRK07406 209 SRTIRLPV-----HLYETISRIKKTTKVLS--------QEFGRKPTEE-EIAESmeMTIEKLRFIAKSAQlpisletpig 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 189 -DEDSfAPIDWLADHDSEPSRQLSKQahyaLQTEGLQNALAQLDDRSRRIVESRWLQDDGGL-TLHQLAAEYGVSAERIR 266
Cdd:PRK07406 275 kEEDS-RLGDFIEADGETPEDDVAKN----LLREDLEGVLATLSPRERDVLRLRYGLDDGRMkTLEEIGQIFNVTRERIR 349
|
250
....*....|.
gi 1518349244 267 QIEAKAMQKLR 277
Cdd:PRK07406 350 QIEAKALRKLR 360
|
|
| PRK05949 |
PRK05949 |
RNA polymerase sigma factor; Validated |
34-277 |
3.38e-19 |
|
RNA polymerase sigma factor; Validated
Pssm-ID: 180321 [Multi-domain] Cd Length: 327 Bit Score: 85.66 E-value: 3.38e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 34 EETRLaERRIKGDLNAAKQLILSHLRVVVSIARGYDGYGLNQADLIQEGNIGLMKAVKRYEPGRGARLFSFAVHWIKAEI 113
Cdd:PRK05949 78 SETEL-KQTLKQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAI 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 114 HEFILRNWRLVR--VATTKPQRKLFFNLRSMRKNL-NALSPKEaqdIADDLGVKLS---EVLEMEQRMTGHDIAImADNS 187
Cdd:PRK05949 157 TRAIAQQARTIRlpIHITEKLNKIKKTQRELSQKLgRSATPAE---IAKELELEPSqirEYLSMARQPISLDVRV-GDNQ 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 188 DDEDSfapiDWLADHDSEPSRQLSKQahyaLQTEGLQNALAQLDDRSRRIVESRW-LQDDGGLTLHQLAAEYGVSAERIR 266
Cdd:PRK05949 233 DTELS----ELLEDEGPSPDQYITQE----LLRQDLNNLLAELTPQQREVLTLRFgLEDGKELSLAKVGERLNLSRERVR 304
|
250
....*....|.
gi 1518349244 267 QIEAKAMQKLR 277
Cdd:PRK05949 305 QLEHQALAHLR 315
|
|
| PRK05803 |
PRK05803 |
RNA polymerase sporulation sigma factor SigK; |
20-276 |
1.50e-18 |
|
RNA polymerase sporulation sigma factor SigK;
Pssm-ID: 180266 [Multi-domain] Cd Length: 233 Bit Score: 82.30 E-value: 1.50e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 20 YIhTVNSIPM-LSQEEETRLAERRIKGDLNAAKQLILSHLRVVVSIARGYDGYGLNQADLIQEGNIGLMKAVKRYEPGRG 98
Cdd:PRK05803 21 YV-KNNSFPQpLSEEEERKYLELMKEGDEEARNILIERNLRLVAHIVKKFENTGEDVDDLISIGTIGLIKAIESFDAGKG 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 99 ARLFSFAVHWIKAEIhefilrnwrlvrvattkpqrklFFNLRSMRKNLNALSpkeaqdIADDLGVklsevlEMEqrmtGH 178
Cdd:PRK05803 100 TKLATYAARCIENEI----------------------LMHLRNLKKTKKEVS------LQDPIGV------DKE----GN 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 179 DIAIMADNSDDEDSfapidwladhdsepsrqLSKQAHYALQTEGLQNALAQLDDRSRRIVESRW-LQDDGGLTLHQLAAE 257
Cdd:PRK05803 142 EISLIDILGSEEDD-----------------VIEQVELKMEVEKLYKKIDILDEREKEVIEMRYgLGNGKEKTQREIAKA 204
|
250
....*....|....*....
gi 1518349244 258 YGVSAERIRQIEAKAMQKL 276
Cdd:PRK05803 205 LGISRSYVSRIEKRALKKL 223
|
|
| PRK08215 |
PRK08215 |
RNA polymerase sporulation sigma factor SigG; |
27-280 |
2.54e-17 |
|
RNA polymerase sporulation sigma factor SigG;
Pssm-ID: 181296 [Multi-domain] Cd Length: 258 Bit Score: 79.22 E-value: 2.54e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 27 IPMLSQEEETRLAERRIKGDLNAAKQLILSHLRVVVSIARGYDGYGLNQADLIQEGNIGLMKAVKRYEPGRGARLFSFAV 106
Cdd:PRK08215 16 LPVLKNEEMRELFERMQNGDKEAREKLINGNLRLVLSVIQRFNNRGENVDDLFQVGCIGLMKAIDNFDLSQNVKFSTYAV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 107 HWIKAEIHEFiLRNWRLVRVatTKPQRKLFFNLRSMRKNLNALSPKE--AQDIADDLGVKLSEVlemeqrmtghdiaIMA 184
Cdd:PRK08215 96 PMIIGEIRRY-LRDNNPIRV--SRSLRDIAYKALQVREKLINENSKEptVEEIAKELEVPREEV-------------VFA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 185 -DNSDDEDS-FAPI-----------DWLADHDSEPSRQLSKQAhyalqtegLQNALAQLDDRSRRIVESRWLQddgGLTL 251
Cdd:PRK08215 160 lDAIQDPVSlFEPIyhdggdpiyvmDQISDEKNKDENWLEEIA--------LKEAMKKLNDREKLILNLRFFQ---GKTQ 228
|
250 260
....*....|....*....|....*....
gi 1518349244 252 HQLAAEYGVSAERIRQIEAKAMQKLRGFL 280
Cdd:PRK08215 229 MEVAEEIGISQAQVSRLEKAALKHMRKYI 257
|
|
| PRK07408 |
PRK07408 |
RNA polymerase sigma factor SigF; Reviewed |
77-285 |
3.10e-16 |
|
RNA polymerase sigma factor SigF; Reviewed
Pssm-ID: 180965 [Multi-domain] Cd Length: 256 Bit Score: 76.50 E-value: 3.10e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 77 DLIQEGNIGLMKAVKRYEPGRGARLFSFAVHWIKAEIHEF---------ILRNWRLVRVATTKPQRKLffnlrsmRKNLN 147
Cdd:PRK07408 55 DLVQVGSLGLIRAIERFDPSKGHAFSSFAIPYIRGEIQHYlrdksptvrIPRRWQELQRQAKKVRQEL-------RQELG 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 148 AlSPKEaQDIADDLGVKLSEVLEME----QRMTGHDIAIMADNSDDEDSFApiDWLADHDSePSRQLSKQAHyaLQtegL 223
Cdd:PRK07408 128 R-QPTD-QEIAQALDISLEEWQEIKlalqNRTPLSLDAPVNQDEDGSTSLG--DLLPDPRY-RSFQLAQEDR--IR---L 197
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1518349244 224 QNALAQLDDRSRRIVESRWLQDdggLTLHQLAAEYGVSAERI-RQIEaKAMQKLRGFLTEEAE 285
Cdd:PRK07408 198 QQALAQLEERTREVLEFVFLHD---LTQKEAAERLGISPVTVsRRVK-KGLDQLKKLLQPEDD 256
|
|
| PRK05572 |
PRK05572 |
RNA polymerase sporulation sigma factor, SigF/SigG family; |
28-282 |
3.88e-16 |
|
RNA polymerase sporulation sigma factor, SigF/SigG family;
Pssm-ID: 180137 [Multi-domain] Cd Length: 252 Bit Score: 76.16 E-value: 3.88e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 28 PMLSQEEETRLAERRIKGDLNAAKQLILSHLRVVVSIARGYDGYGLNQADLIQEGNIGLMKAVKRYEPGRGARLFSFAVH 107
Cdd:PRK05572 12 PQLKDEENKELIKKSQDGDQEARDTLVEKNLRLVWSVVQRFLNRGYEPDDLFQIGCIGLLKAVDKFDLSYDVKFSTYAVP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 108 WIKAEIHEFiLRNWRLVRVATTKPQ--RKLFFNLRSMRKNLNAlSPKeAQDIADDLGVKLSEVLemeqrmtghdIAIMAD 185
Cdd:PRK05572 92 MIIGEIQRF-LRDDGTVKVSRSLKEtaNKIRKDKDELSKELGR-EPT-IEELAEYLGVTPEEVV----------LAQEAS 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 186 NS----------DDEDSFAPIDWLADHDSEpsRQLSKQAhyalqtegLQNALAQLDDRSRRIVESRWLQDDgglTLHQLA 255
Cdd:PRK05572 159 RSpqsihetvheNDGDPITLLDQIADQSEE--DWFDKIA--------LKEAIRELDERERLIVYLRYFKDK---TQSEVA 225
|
250 260
....*....|....*....|....*..
gi 1518349244 256 AEYGVSAERIRQIEAKAMQKLRGFLTE 282
Cdd:PRK05572 226 KRLGISQVQVSRLEKKILKQMKEKLDE 252
|
|
| Sigma70_r2 |
pfam04542 |
Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. ... |
53-122 |
5.11e-16 |
|
Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. All members of this class of sigma-factor contain region 2. The high conservation is due to region 2 containing both the -10 promoter recognition helix and the primary core RNA polymerase binding determinant. The core binding helix, interacts with the clamp domain of the largest polymerase subunit, beta prime. The aromatic residues of the recognition helix, found at the C-terminus of this domain are though to mediate strand separation, thereby allowing transcription initiation.
Pssm-ID: 427998 [Multi-domain] Cd Length: 71 Bit Score: 71.08 E-value: 5.11e-16
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 53 LILSHLRVVVSIARGYDGYGLNQADLIQEGNIGLMKAVKRYEPGRGARLFSFAVHWIKAEIHEFILRNWR 122
Cdd:pfam04542 1 LVERYLPLVYSLARRYLGDGADAEDLVQEGFLGLWRAIERFDPERGVSFSTWLYTIIRNAIIDYLRKQRR 70
|
|
| PRK07405 |
PRK07405 |
RNA polymerase sigma factor SigD; Validated |
49-277 |
7.06e-16 |
|
RNA polymerase sigma factor SigD; Validated
Pssm-ID: 180963 [Multi-domain] Cd Length: 317 Bit Score: 76.34 E-value: 7.06e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 49 AAKQLILSHLRVVVSIARGYDGYGLNQADLIQEGNIGLMKAVKRYEPGRGARLFSFAVHWIKAEIHEFILRNWRLVRV-- 126
Cdd:PRK07405 82 AKRKMVEANLRLVVSVAKKYLKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLpi 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 127 -------ATTKPQRKLffnlrSMRKNLNALSPKEAQDIadDLGVK-LSEVLEMEQRMTGHDIAImADNSDDEDSfapiDW 198
Cdd:PRK07405 162 hiteklnKIKKAQRQL-----SQQLGRAATIGELAEEL--ELTPKqVREYLERARQPLSLDLRV-GDNQDTELG----EL 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 199 LADHDSEPSrqlSKQAHYALQTEgLQNALAQLDDRSRRIVESRWLQDDG-GLTLHQLAAEYGVSAERIRQIEAKAMQKLR 277
Cdd:PRK07405 230 LEDTGASPE---DFATQSSLQLD-LERLMEDLTPQQKEVIALRFGLEDGqPLTLAKIGERLNISRERVRQIEREALSKLR 305
|
|
| PRK05658 |
PRK05658 |
RNA polymerase sigma factor RpoD; Validated |
48-277 |
1.79e-14 |
|
RNA polymerase sigma factor RpoD; Validated
Pssm-ID: 235549 [Multi-domain] Cd Length: 619 Bit Score: 73.29 E-value: 1.79e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 48 NAAKQLILSHLRVVVSIARGYDGYGLNQADLIQEGNIGLMKAVKRYEPGRGARlFS-FAVHWIKAEI------------- 113
Cdd:PRK05658 380 RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK-FStYATWWIRQAItrsiadqartiri 458
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 114 --H--EFIlrNwRLVRVattkpqrklffnlrsMRKNLNALSpKEAQD--IADDLGV---KLSEVLEmeqrmtghdIA--- 181
Cdd:PRK05658 459 pvHmiETI--N-KLNRI---------------SRQMLQEIG-REPTPeeLAERLGMpedKVRKVLK---------IAkep 510
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 182 ------ImadnSDDEDS----F-------APIDwladhdsepsrqlskqahYALQtEGLQNA----LAQLDDRSRRIVES 240
Cdd:PRK05658 511 isletpI----GDDEDShlgdFiedknaeLPID------------------AAIQ-ESLREAttdvLASLTPREAKVLRM 567
|
250 260 270
....*....|....*....|....*....|....*...
gi 1518349244 241 RW-LQDDGGLTLHQLAAEYGVSAERIRQIEAKAMQKLR 277
Cdd:PRK05658 568 RFgIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 605
|
|
| PRK08301 |
PRK08301 |
RNA polymerase sporulation sigma factor SigE; |
28-277 |
8.63e-14 |
|
RNA polymerase sporulation sigma factor SigE;
Pssm-ID: 236228 [Multi-domain] Cd Length: 234 Bit Score: 69.11 E-value: 8.63e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 28 PMLSQEEETRLAERRIKGDLNAAKQLILSHLRVVVSIARGYDGYGLNQADLIQEGNIGLMKAVKRYEPGRGARLFSFAVH 107
Cdd:PRK08301 32 PPLSKEEEEYLLNKLPKGDEAVRSLLIERNLRLVVYIARKFENTGINIEDLISIGTIGLIKAVNTFNPEKKIKLATYASR 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 108 WIKAEIHEFILRNwrlvrvattkpqrklffnlrsmRKNLNALSPKEAQDIADDlG--VKLSEVLEMEQRMTGHDIaimad 185
Cdd:PRK08301 112 CIENEILMYLRRN----------------------NKVKAEVSFDEPLNIDWD-GneLLLSDVLGTDNDIIYKDI----- 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 186 nsddedsfapidwladhDSEPSRQLskqahyalqtegLQNALAQLDDRSRRIVESRW-LQDDGGLTLHQLAAEYGVSAER 264
Cdd:PRK08301 164 -----------------EDEVDRKL------------LKKALKKLSDREKQIMELRFgLNGGEEKTQKEVADMLGISQSY 214
|
250
....*....|...
gi 1518349244 265 IRQIEAKAMQKLR 277
Cdd:PRK08301 215 ISRLEKRIIKRLK 227
|
|
| PRK07122 |
PRK07122 |
RNA polymerase sigma factor SigF; Reviewed |
64-277 |
1.65e-13 |
|
RNA polymerase sigma factor SigF; Reviewed
Pssm-ID: 168831 [Multi-domain] Cd Length: 264 Bit Score: 68.65 E-value: 1.65e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 64 IARGYDGYGLNQADLIQEGNIGLMKAVKRYEPGRGARLFSFAVHWIKAEIHEFILRNWRLVRVattkPQRklffnLRSMR 143
Cdd:PRK07122 56 IARRFDGRGEPRDDLVQVARVGLVNAVNRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKV----PRR-----LKELH 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 144 KNLNALSPKEAQ---------DIADDLGVKLSEVLE-MEQRMTGHDIAIMA-DNSDDEDSFAPIDWLADHDSEPSRQLSK 212
Cdd:PRK07122 127 LRLGRATAELSQrlgraptasELAAELGMDREEVVEgLVAGSAYNTLSIDSgGGSGDDDARAIADTLGDVDAGLDQIENR 206
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1518349244 213 qahyalqtEGLQNALAQLDDRSRRIVESRWLqddGGLTLHQLAAEYGVSAERIRQIEAKAMQKLR 277
Cdd:PRK07122 207 --------EALRPLLAALPERERTVLVLRFF---ESMTQTQIAERVGISQMHVSRLLAKTLARLR 260
|
|
| Sigma70_r4 |
pfam04545 |
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 ... |
226-277 |
4.09e-12 |
|
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.
Pssm-ID: 461347 [Multi-domain] Cd Length: 50 Bit Score: 59.75 E-value: 4.09e-12
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 1518349244 226 ALAQLDDRSRRIVESRWLQddgGLTLHQLAAEYGVSAERIRQIEAKAMQKLR 277
Cdd:pfam04545 1 ALASLPPRERQVLVLRYGE---GLTLEEIGERLGISRERVRQIEKRALRKLR 49
|
|
| PRK05911 |
PRK05911 |
RNA polymerase sigma factor sigma-28; Reviewed |
77-281 |
1.32e-11 |
|
RNA polymerase sigma factor sigma-28; Reviewed
Pssm-ID: 235644 [Multi-domain] Cd Length: 257 Bit Score: 63.48 E-value: 1.32e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 77 DLIQEGNIGLMKAVKRYEPGRGARLFSFAVHWIKAEIHEfILRNWRLVRVATTKPQRKLFFNLRSMRKNLNalspKEAQD 156
Cdd:PRK05911 55 DLYASGVEGLVRAVERFDPEKSRRFEGYALFLIKAAIID-DLRKQDWVPRSVHQKANKLADAMDSLRQSLG----KEPTD 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 157 IaddlgvKLSEVLEMEQRMTGHDIA------IMADN------SDDEDSFAPIDWLADHDSEPSRQLSKQAHYALQtegLQ 224
Cdd:PRK05911 130 G------ELCEYLNISQQELSGWFSsarpalILSLNeefpcqSDDEAGLALEERIADERAETGYDVVDKKEFSSI---LA 200
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1518349244 225 NALAQLDDRSRRIVESRWLQDdggLTLHQLAAEYGVSAERIRQIEAKAMQKLRGFLT 281
Cdd:PRK05911 201 EAILALEEKERKVMALYYYEE---LVLKEIGKILGVSESRVSQIHSKALLKLRATLS 254
|
|
| PRK06288 |
PRK06288 |
RNA polymerase sigma factor WhiG; Reviewed |
26-282 |
1.78e-11 |
|
RNA polymerase sigma factor WhiG; Reviewed
Pssm-ID: 235770 [Multi-domain] Cd Length: 268 Bit Score: 63.17 E-value: 1.78e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 26 SIPMLSQEEETRL-AERRIKGDLNAAKQLILSHLRVVVSIArGYDGYGL----NQADLIQEGNIGLMKAVKRYEPGRGAR 100
Cdd:PRK06288 8 KIPKYAQQDETELwREYKKTGDPKIREYLILKYSPLVKYVA-GRIAVGMpqnvEFDDLVSYGVFGLIDAIEKFDPEREIK 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 101 LFSFAVHWIKAEIHEFiLR--NW--RLVRvattkPQRKLFFNLRSMRKNLNALSPKEaQDIADDLGVKLSEVLEMEQRMT 176
Cdd:PRK06288 87 FKTYAVTRIRGAIFDE-LRsiDWipRSVR-----QKARQIERAIAMLEARLGRTPSD-EEIADELGISLEEYNSLLSKLS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 177 GHDIAIMAD---NSDDEDSFAPIDWLADHDSEpsrqlskQAHYALQTEGLQN----ALAQLDDRSRRIVESRWLQDdggL 249
Cdd:PRK06288 160 GTSVVSLNDlwfGGDEGDEVSLMDTLESPAAL-------NPDEIAEREEIKRviveAIKTLPEREKKVLILYYYED---L 229
|
250 260 270
....*....|....*....|....*....|...
gi 1518349244 250 TLHQLAAEYGVSAERIRQIEAKAMQKLRGFLTE 282
Cdd:PRK06288 230 TLKEIGKVLGVTESRISQLHTKAVLQLRAKLAE 262
|
|
| sigma70-ECF |
TIGR02937 |
RNA polymerase sigma factor, sigma-70 family; This model encompasses all varieties of the ... |
48-280 |
3.97e-11 |
|
RNA polymerase sigma factor, sigma-70 family; This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Pssm-ID: 274357 [Multi-domain] Cd Length: 158 Bit Score: 60.05 E-value: 3.97e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 48 NAAKQLILSHLRVVVSIARGYDGYGLNQADLIQEGNIGLMKAVKRYEPgrGARLFSFAVHWIKAEIHEFilrnwrlvrva 127
Cdd:TIGR02937 1 EAFEELYERYLPLVYRYARRYLGDDADAEDLVQEAFLKLLEALDRFDP--EGSFKAWLFRIARNLILDY----------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 128 ttkpqrklffnLRSMRKNlnalspkeaqdiaddlgvklsevlemeqRMTGHDIAIMADNSDDEDSfapidwladhdseps 207
Cdd:TIGR02937 68 -----------LRRKRRL----------------------------RRELDLLEELLDSDPSPEE--------------- 93
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1518349244 208 rqlskQAHYALQTEGLQNALAQLDDRSRRIVESRWLQddgGLTLHQLAAEYGVSAERIRQIEAKAMQKLRGFL 280
Cdd:TIGR02937 94 -----ELEQEEEREALREALEKLPEREREVLVLRYLE---GLSYKEIAEILGISVGTVKRRLKRARKKLRELL 158
|
|
| PRK08583 |
PRK08583 |
RNA polymerase sigma factor SigB; Validated |
45-284 |
6.09e-11 |
|
RNA polymerase sigma factor SigB; Validated
Pssm-ID: 236306 [Multi-domain] Cd Length: 257 Bit Score: 61.25 E-value: 6.09e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 45 GDLNAAKQLILSHLRVVVSIARGYDGYGLNQADLIQEGNIGLMKAVKRYEPGRGARLFSFAVHWIKAEIHEFIL-RNWRl 123
Cdd:PRK08583 26 QDEEAQEKLVKHYKNLVESLAYKYSKGQSHHEDLVQVGMVGLLGAIRRYDPSFGRSFEAFAVPTIIGEIKRYLRdKTWS- 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 124 VRVattkPQR--KLFFNLRSMRKNLNA---LSPKeAQDIADDLGVKLSEVLE-MEQ----RMTGHDIAIMADNsdDEDSF 193
Cdd:PRK08583 105 VHV----PRRikELGPKIKKAVDELTTelqRSPK-ISEIADRLGVSEEEVLEaMEMgksyQALSVDHSIEADS--DGSTV 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 194 APIDWLAdhdsepsrqlSKQAHYAL--QTEGLQNALAQLDDRSRRIVESRWLQddgGLTLHQLAAEYGVSAERIRQIEAK 271
Cdd:PRK08583 178 TLLDIVG----------QQEDGYELteQRMILEKILPVLSDREKSIIQCTFIE---NLSQKETGERLGISQMHVSRLQRQ 244
|
250
....*....|...
gi 1518349244 272 AMQKLRGFLTEEA 284
Cdd:PRK08583 245 AIKKLREAAFLDT 257
|
|
| Sigma70_r4 |
cd06171 |
Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in ... |
223-277 |
9.20e-10 |
|
Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplasmic stress and pathogenesis. Ec sigmaE SR4 also contacts the -35 element, but recognizes a different consensus (a 7-base-pair GGAACTT). Plant SFs recognize sigma70 type promoters and direct transcription of the major plastid RNA polymerase, plastid-encoded RNA polymerase (PEP).
Pssm-ID: 100119 [Multi-domain] Cd Length: 55 Bit Score: 53.26 E-value: 9.20e-10
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1518349244 223 LQNALAQLDDRSRRIVESRWLQddgGLTLHQLAAEYGVSAERIRQIEAKAMQKLR 277
Cdd:cd06171 4 LEEALDKLPEREREVILLRFGE---GLSYEEIAEILGISRSTVRQRLHRALKKLR 55
|
|
| fliA |
PRK06986 |
flagellar biosynthesis sigma factor; Validated |
77-282 |
4.07e-09 |
|
flagellar biosynthesis sigma factor; Validated
Pssm-ID: 235901 [Multi-domain] Cd Length: 236 Bit Score: 55.62 E-value: 4.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 77 DLIQEGNIGLMKAVKRYEPGRGARLFSFAVHWIKAEIHEFILRN-W--RLVRvattKPQRKLFFNLRSMRKNLNAlSPKE 153
Cdd:PRK06986 40 DLIQAGMIGLLEAARRYDGEQGASFETYAGQRIRGAMLDELRSLdWvpRSVR----RNAREVAQAIRQLEQELGR-EPTD 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 154 AQdIADDLGVKLSEVLEMEQRMTGHDIAIMAD-NSDDEDSFAPIDwlADHDSEPSRQLSKQahyALQtEGLQNALAQLDD 232
Cdd:PRK06986 115 TE-VAEKLGLSLEEYREMLLDTNISQLFSIDElRGEHGDSILVTE--DHQDEDPLQQLEDE---ELR-EALVEAIESLPE 187
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1518349244 233 RSRRIVEsrwLQDDGGLTLHQLAAEYGVSAERIRQIEAKAMQKLRGFLTE 282
Cdd:PRK06986 188 REQLVLS---LYYQEELNLKEIGAVLGVSESRVSQIHSQAIKRLRARLGE 234
|
|
| PRK08295 |
PRK08295 |
RNA polymerase sporulation sigma factor SigH; |
29-117 |
1.28e-06 |
|
RNA polymerase sporulation sigma factor SigH;
Pssm-ID: 181361 [Multi-domain] Cd Length: 208 Bit Score: 47.98 E-value: 1.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 29 MLSQEEETRLAERrIKGDLNAAKQLILSHLR-VVVSIARGYDGYGLNQADLIQEGNIGLMKAVKRYEPGRGARLFSFAVH 107
Cdd:PRK08295 5 DYDELEDEELVEL-ARSGDKEALEYLIEKYKnFVRAKARSYFLIGADREDIVQEGMIGLYKAIRDYDKDKLSSFKSFAEL 83
|
90
....*....|
gi 1518349244 108 WIKAEIHEFI 117
Cdd:PRK08295 84 CITRQIITAI 93
|
|
| PRK12427 |
PRK12427 |
FliA/WhiG family RNA polymerase sigma factor; |
73-280 |
2.60e-06 |
|
FliA/WhiG family RNA polymerase sigma factor;
Pssm-ID: 183523 [Multi-domain] Cd Length: 231 Bit Score: 47.55 E-value: 2.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 73 LNQADLIQEGNIGLMKAVKRY-EPGRGarLFSFAVHWIKAEI-HEFILRNWRLVRVATTKPQRKLFfnLRSMRKNLNalS 150
Cdd:PRK12427 43 IDREDMEQIALMGLLEALRRYgHPDEQ--FAAYAVHRIRGAIlDELRELDWRPRRLRQKTHKTNDA--IREIAKRLG--H 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 151 PKEAQDIADDLGVKLSEVLEMEQRMTGHDIAIMADNSDDEDSFAPIDwladhdsepSRQLSKQAhyaLQTEGLQNALAQL 230
Cdd:PRK12427 117 EPNFEEISAELNLTAEEYQEYLLLENAGTLESLDELLALEAHNDILQ---------SRDLEENI---IIEDNLKQALSQL 184
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1518349244 231 DDRSRRIVESRWLQDdggLTLHQLAAEYGVSAERIRQIEAKAMQKLRGFL 280
Cdd:PRK12427 185 DEREQLILHLYYQHE---MSLKEIALVLDLTEARICQLNKKIAQKIKSFF 231
|
|
| PRK07670 |
PRK07670 |
FliA/WhiG family RNA polymerase sigma factor; |
77-280 |
4.30e-04 |
|
FliA/WhiG family RNA polymerase sigma factor;
Pssm-ID: 181075 [Multi-domain] Cd Length: 251 Bit Score: 40.80 E-value: 4.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 77 DLIQEGNIGLMKAVKRYEPGRGARLFSFAVHWIKAEIHEFILRNWRLVRVATTKPQR------KLffNLRSMRknlnALS 150
Cdd:PRK07670 54 DLKSLGMLGLYDALEKFDPSRDLKFDTYASFRIRGAIIDGLRKEDWLPRSMREKTKKveaaieKL--EQRYMR----NVT 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 151 PKEaqdIADDLGVKLSEV------------LEMEQRMTGHDiaimadnSDDEDSFAPIDwlaDHDSEPSRQLSKQAhyal 218
Cdd:PRK07670 128 PKE---VAAELGMTEEEVeatmnegffanlLSIDEKTHDQD-------DGENVSVTIRD---DKTPTPEEKLLKEE---- 190
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1518349244 219 QTEGLQNALAQLDDRsRRIVESRWLQDDggLTLHQLAAEYGVSAERIRQIEAKAMQKLRGFL 280
Cdd:PRK07670 191 LIEELAEKIKQLSEK-EQLVISLFYKEE--LTLTEIGQVLNLSTSRISQIHSKALFKLKKLL 249
|
|
| RpoE |
COG1595 |
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; ... |
195-286 |
5.75e-04 |
|
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; DNA-directed RNA polymerase specialized sigma subunit, sigma24 family is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 441203 [Multi-domain] Cd Length: 181 Bit Score: 39.98 E-value: 5.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1518349244 195 PIDWLADHDSEPSRQLSKQAHYALqtegLQNALAQLDDRSRRIVESRWLQddgGLTLHQLAAEYGVSAERIRQIEAKAMQ 274
Cdd:COG1595 97 LAEELPDEAADPEEALEAEELLEA----LLAALERLPPRQREVLVLRYLE---GLSYAEIAEILGISEGTVKSRLSRARK 169
|
90
....*....|..
gi 1518349244 275 KLRGFLTEEAEA 286
Cdd:COG1595 170 KLREALEEEGAL 181
|
|
| Sigma70_r1_2 |
pfam00140 |
Sigma-70 factor, region 1.2; |
16-46 |
1.55e-03 |
|
Sigma-70 factor, region 1.2;
Pssm-ID: 425482 [Multi-domain] Cd Length: 34 Bit Score: 35.36 E-value: 1.55e-03
10 20 30
....*....|....*....|....*....|.
gi 1518349244 16 SLEQYIHTVNSIPMLSQEEETRLAERRIKGD 46
Cdd:pfam00140 2 SVRLYLKEIGRIPLLTAEEEVELAKRIEAGD 32
|
|
| |
