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Conserved domains on  [gi|1517432514|gb|ROW02191|]
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hypothetical protein VSDG_02401 [Valsa sordida]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5353 super family cl38588
Family of unknown function (DUF5353); This is a family of unknown function found mostly in ...
 118-176 3.08e-10

Family of unknown function (DUF5353); This is a family of unknown function found mostly in Fungi. Members of this family are predicted to contain 2 trans-membrane regions.


The actual alignment was detected with superfamily member pfam17304:

Pssm-ID: 407415  Cd Length: 68  Bit Score: 53.50  E-value: 3.08e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1517432514 118 IVIANLAAVVGLGAVLGYKAWGLHERGQFSWKTAGLGAGIVATVGVFESVFAQYFNKAR 176
Cdd:pfam17304   6 VVLGNAVLLAALGAGLGYGAYRKYARGELTWKVVGAWAGAVGAFAVGDYYVSKWLFQNK 64
 
Name Accession Description Interval E-value
DUF5353 pfam17304
Family of unknown function (DUF5353); This is a family of unknown function found mostly in ...
 118-176 3.08e-10

Family of unknown function (DUF5353); This is a family of unknown function found mostly in Fungi. Members of this family are predicted to contain 2 trans-membrane regions.


Pssm-ID: 407415  Cd Length: 68  Bit Score: 53.50  E-value: 3.08e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1517432514 118 IVIANLAAVVGLGAVLGYKAWGLHERGQFSWKTAGLGAGIVATVGVFESVFAQYFNKAR 176
Cdd:pfam17304   6 VVLGNAVLLAALGAGLGYGAYRKYARGELTWKVVGAWAGAVGAFAVGDYYVSKWLFQNK 64
 
Name Accession Description Interval E-value
DUF5353 pfam17304
Family of unknown function (DUF5353); This is a family of unknown function found mostly in ...
 118-176 3.08e-10

Family of unknown function (DUF5353); This is a family of unknown function found mostly in Fungi. Members of this family are predicted to contain 2 trans-membrane regions.


Pssm-ID: 407415  Cd Length: 68  Bit Score: 53.50  E-value: 3.08e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1517432514 118 IVIANLAAVVGLGAVLGYKAWGLHERGQFSWKTAGLGAGIVATVGVFESVFAQYFNKAR 176
Cdd:pfam17304   6 VVLGNAVLLAALGAGLGYGAYRKYARGELTWKVVGAWAGAVGAFAVGDYYVSKWLFQNK 64
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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