|
Name |
Accession |
Description |
Interval |
E-value |
| RND_permease_2 |
NF033617 |
multidrug efflux RND transporter permease subunit; |
4-1010 |
0e+00 |
|
multidrug efflux RND transporter permease subunit;
Pssm-ID: 411236 [Multi-domain] Cd Length: 1009 Bit Score: 1419.01 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 4 SDVSVKRPVAAVVLSLLLVVFGIVSFNKLAVREMPDIESPVVSISTRYEGASATIIESQITANLEDQLSGISGIDEIEST 83
Cdd:NF033617 1 SDVFIKRPVATLLLSLLILLLGLLAFRKLPVREYPEVDFPTITVSTSYPGASPELMQSSITQPLEQQLAQIEGIDEMTSQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 84 TRNGMSRITITFELGYDLNTGVSDVRDAVARAQRSLPDEADDPIVYKNNGS-GEASVYINLSSTEMDRTQLTDYTERVLI 162
Cdd:NF033617 81 SSLGYSTITLQFRLGTDLDVALSEVQAAINAAQSLLPSEAPDPPVYRKANSaDTPIMYIGLTSEEMPRGQLTDYAERVLA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 163 DRFSLISGVSSVDISGGLYKVMYVKLKPAQMAGRGVTTSDITSALNSENIESPGGEVRNDAIVMSVRTARSYTEAEDFEY 242
Cdd:NF033617 161 PKLSQINGVGSVDVSGGQRPAMRVWLDPEKMAARGLTADDVRSALNSNNVNSPKGAVRGDSVVSTVRANDQLKTAEDYED 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 243 LVVKRASDNTPIYLKDVADVYIGAENENSTFKSDGVVNVSMGIVPQSDANPLEVADLVHKEVEAIQKFLPDGTRLAVDYD 322
Cdd:NF033617 241 LVIKYADNGAPVRLGDVATVELGAENVRNRAWANGVPAVVLGINRQPGANPIEVADEIRALLPELQETLPKNIKVNVLYD 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 323 STVFIDRSISEVYSTLFITGGLVILVLYIFIGQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALILSIGLVVDD 402
Cdd:NF033617 321 RTRFIRASIDEVESTLLEAVALVILVVFLFLRNLRATLIPAVTVPLSLIGTFAVMYLFGFSINLLTLMALVLAIGLVVDD 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 403 AIVVVENIFHHIERGESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMSVIFSSLVALTLT 482
Cdd:NF033617 401 AIVVVENIHRHIEEGESPLEAALKGAREIGFTVIAMTLTLVAVYLPILFMGGLTGRLFREFAVTLAGAVIISGIVALTLT 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 483 PVLGSKILKANVKPNRFNLFVERVFGKLESGYRSVLRRALNWRWAAPIIIIACMGGSYGLMQQVPSQLTPQEDRGVIFAF 562
Cdd:NF033617 481 PMMCSRLLKANEKPGRFARAVDRFFDGLTARYGRGLKWVLKHRPLTLVVALATLALLPLLYVFIPKELAPSEDRGVIFGM 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 563 VRGADATSYNRMSANMDIVEERLMPLLGQGFLKSFSIQspafGGNAGDQTGFVIMILEDWDERDVTAQEALNEVRQSLAG 642
Cdd:NF033617 561 IQAPQSISLDYMSAKMRDVEKILSSDPEVQSLTSFNGV----GGNPGDNTGFGIINLKPWDERDVSAQEIIDRLRPKLAK 636
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 643 IP--DVRVFPFMPGF--KGGSSEPVQFVLGGSDYTELQKWAELLKQAAEDSPMMEGADIDYSEKTPELLVTVDKQRAAEL 718
Cdd:NF033617 637 VPgmDLFLFPLQDLPggAGSSLPQYQVTLTPSDYDSLFTWAEKLKEKLRKSPQFADVDSDLQDKGPELNVDIDRDKAARL 716
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 719 GVSVSDISDTLEIMLGGRSETTFVDRGEEYDVYLRGDENSFNNANDLSQIYMRTQSGELVTLDTLTHIEEVASSIRLSHY 798
Cdd:NF033617 717 GISMQDIGSTLEVAFGQRQVNTIYTDGNQYKVVLEVDRRYRLNPEALNQIYVRSNDGKLVPLSTLAKIEERAAPLSLNHF 796
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 799 NKQKSVTIKANLMEGYTLGDALDFLDEQAIEQLPGDISVSYSGESKDFKENQSSILVVFALAMLVAYLVLAAQFESFINP 878
Cdd:NF033617 797 NQFNSATLSFNLAPGVSLGEAIEALDQAAKELLPSGISGSFQGAARAFQEEGSSLLFLFLLALAAIYLVLAIQYESFVDP 876
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 879 LVVMFTVPMGIFGGFLGLVLMSQGLNVYSQIGMIMLIGMVTKNGILIVEFANQLRDR-GIEFEKAIIDASARRLRPIMMT 957
Cdd:NF033617 877 LTILSTVPLAGCGALLALALGGQSMNIYAQIGLITLIGLVKKNGILMVEFANELQRHqGLSRREAIYQAAALRLRPILMT 956
|
970 980 990 1000 1010
....*....|....*....|....*....|....*....|....*....|...
gi 1516000590 958 AFTTLAGAIPLITSTGAGYESRVAVGTVIFFGMGFATLVTLFVIPAMYRLISG 1010
Cdd:NF033617 957 TLAMLLGAIPLMLSTGAGAESRFPLGIVIVGGLGVGTLFTLFVLPVVYLLLAR 1009
|
|
| AcrB |
COG0841 |
Multidrug efflux pump subunit AcrB [Defense mechanisms]; |
1-1010 |
0e+00 |
|
Multidrug efflux pump subunit AcrB [Defense mechanisms];
Pssm-ID: 440603 [Multi-domain] Cd Length: 1015 Bit Score: 1128.28 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 1 MLLSDVSVKRPVAAVVLSLLLVVFGIVSFNKLAVREMPDIESPVVSISTRYEGASATIIESQITANLEDQLSGISGIDEI 80
Cdd:COG0841 1 MNLSRFFIRRPVAAIVLSLLILLAGLLAYLRLPVEQFPDIDPPTVTVSTTYPGASPEEVESTVTTPIEEALNGVEGIKYI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 81 ESTTRNGMSRITITFELGYDLNTGVSDVRDAVARAQRSLPDEADDPIVYKNNGSGEASVYINLSSTEMDRTQLTDYTERV 160
Cdd:COG0841 81 TSTSSEGSSSITVEFELGTDIDEALVDVQNAVDRARSDLPEDVEPPGVTKVNPSDFPVMVLALSSDDLDELELSDYAERN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 161 LIDRFSLISGVSSVDISGGLYKVMYVKLKPAQMAGRGVTTSDITSALNSENIESPGGEVRNDAIVMSVRTARSYTEAEDF 240
Cdd:COG0841 161 IKDRLERVPGVGQVQIFGGREREIRIWLDPDKLAAYGLTLADVANAIRAQNVDVPAGRIGGGDREYTVRTNGRLKTPEEF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 241 EYLVVkRASDNTPIYLKDVADVYIGAENENSTFKSDGVVNVSMGIVPQSDANPLEVADLVHKEVEAIQKFLPDGTRLAVD 320
Cdd:COG0841 241 ENIVI-RTNDGSVVRLGDVARVEDGAEDYRSIARLNGKPAVGLAIQKQPGANALEVADAVRAKLEELQASLPEGVELTIV 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 321 YDSTVFIDRSISEVYSTLFITGGLVILVLYIFIGQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALILSIGLVV 400
Cdd:COG0841 320 YDQSEFIRASIEEVVKTLLEAILLVVLVVFLFLRSWRATLIPAVAIPVSLIGTFAVMYLLGFSLNILTLFALVLAIGIVV 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 401 DDAIVVVENIFHHIERGESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMSVIFSSLVALT 480
Cdd:COG0841 400 DDAIVVVENIERHMEEGLSPLEAAIKGAREVAGAVIASTLTLVAVFLPLAFMGGITGQLFRQFALTVAIALLISLFVALT 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 481 LTPVLGSKILKANV--KPNRFNLFVERVFGKLESGYRSVLRRALNWRWAAPIIIIACMGGSYGLMQQVPSQLTPQEDRGV 558
Cdd:COG0841 480 LTPALCARLLKPHPkgKKGRFFRAFNRGFDRLTRGYGRLLRWALRHRKLTLLVALALLALSVLLFGRLPTEFFPEEDQGQ 559
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 559 IFAFVRGADATSYNRMSANMDIVEERLMPllgQGFLKSFSIQSPAFGGNAGDQTGFVIMILEDWDERDVTAQEALNEVRQ 638
Cdd:COG0841 560 IIVSVQLPPGTSLERTEAVVRQVEEILLE---VPEVESVFSVVGFSGGGSGSNSGTIFVTLKPWDERDRSADEIIARLRE 636
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 639 SLAGIPDVRVFPFMPGFKG-GSSEPVQFVLGGSDYTELQKWAELLKQAAEDSPMMEGADIDYSEKTPELLVTVDKQRAAE 717
Cdd:COG0841 637 KLAKIPGARVFVFQPPAGGlGSGAPIEVQLQGDDLEELAAAAEKLLAALRQIPGLVDVRSDLQLGKPELQLDIDREKAAA 716
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 718 LGVSVSDISDTLEIMLGGRSETTFVDRGEEYDVYLRGDENSFNNANDLSQIYMRTQSGELVTLDTLTHIEEVASSIRLSH 797
Cdd:COG0841 717 LGVTVADVASTLRAALGGRYVNDFNRGGREYDVRVQAPEEDRNSPEDLENLYVRTPDGEMVPLSSVATIEEGTGPSSINR 796
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 798 YNKQKSVTIKANLMEGYTLGDALDFLDEQAIE-QLPGDISVSYSGESKDFKENQSSILVVFALAMLVAYLVLAAQFESFI 876
Cdd:COG0841 797 YNGQRSVTVSANLAPGVSLGEALAAIEELAAElKLPPGVSIEFTGQAEEEQESFSSLGLAFLLALLLVYLVLAAQFESFI 876
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 877 NPLVVMFTVPMGIFGGFLGLVLMSQGLNVYSQIGMIMLIGMVTKNGILIVEFANQLRDRGIEFEKAIIDASARRLRPIMM 956
Cdd:COG0841 877 QPLIILLTVPLALIGALLGLLLTGTPLNIYSQIGLIMLIGIVVKNAILLVDFANQLREEGMSLREAILEAARLRLRPILM 956
|
970 980 990 1000 1010
....*....|....*....|....*....|....*....|....*....|....
gi 1516000590 957 TAFTTLAGAIPLITSTGAGYESRVAVGTVIFFGMGFATLVTLFVIPAMYRLISG 1010
Cdd:COG0841 957 TSLATILGLLPLALGTGAGAEFRQPLGIAVIGGLLFSTLLTLFVVPVLYVLLDR 1010
|
|
| ACR_tran |
pfam00873 |
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are ... |
3-1008 |
0e+00 |
|
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer.
Pssm-ID: 395701 [Multi-domain] Cd Length: 1021 Bit Score: 801.51 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 3 LSDVSVKRPVAAVVLSLLLVVFGIVSFNKLAVREMPDIESPVVSISTRYEGASATIIESQITANLEDQLSGISGIDEIES 82
Cdd:pfam00873 1 MSKFFIRRPIFTLVLAIAILLAGILSFFSLPVDAFPEIAPPTVQVSTSYPGASPEEVEDTVTQPIEQAMNGLDGLKYMSS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 83 TTRNGMSRITITFELGYDLNTGVSDVRDAVARAQRSLPDEADDPIVYKNNGSGEASVYINLSST--EMDRTQLTDYTERV 160
Cdd:pfam00873 81 QSSYGLSSITLTFELGTDIDIARQDVQNRLQLATPLLPEGVQRPGISVIKTSLGPIMVLAVTSPdgSYTQTDLRDYADTN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 161 LIDRFSLISGVSSVDISGGLYKVMYVKLKPAQMAGRGVTTSDITSALNSENIESPGGEVRNDAIVMSVRTARSYTEAEDF 240
Cdd:pfam00873 161 IKPQLSRVPGVGDVQLFGGSEYAMRIWLDPQKLARYGLTLTDVVSALKEQNVNIGAGQLEGQGLQALIRAQGQLQSAEDF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 241 EYLVVKRAsDNTPIYLKDVADVYIGAENENSTFKSDGVVNVSMGIVPQSDANPLEVADLVHKEVEAIQKFLPDGTRLAVD 320
Cdd:pfam00873 241 EKIIVKNQ-DGSPVRLRDVATVELGSELYRGFATFNGKPAVGLGVQKLPGANAIETADAVRAKLAELKPTFPQGVEIVVV 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 321 YDSTVFIDRSISEVYSTLFITGGLVILVLYIFIGQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALILSIGLVV 400
Cdd:pfam00873 320 YDTTPFIRASIEEVVKTLLEAIVLVILVMFLFLQNWRATLIPAIAIPLSLLGTFAVMKAFGFSINTLTLGGLVLAIGLVV 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 401 DDAIVVVENIFHHI-ERGESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMSVIFSSLVAL 479
Cdd:pfam00873 400 DDAIVVVENIERVLeENGLKPLEAAYKSMGEIGGALVAIALVLSAVFLPILFLGGLTGRIFRQFAITIVLAILLSVLVAL 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 480 TLTPVLGSKILKANVKPNRFNLFV--ERVFGKLESGYRSVLRRALNWRWAAPIIIIACMGGSYGLMQQVPSQLTPQEDRG 557
Cdd:pfam00873 480 TLTPALCATLLKPRREPKHGGFFRwfNRMFDRLTRGYAKLLAKVLRHTAVVLLVALLLVVGSVWLFVRIPTEFLPEEDEG 559
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 558 VIFAFVRGADATSYNRMSANMDIVEERlmpLLGQGFLKS-FSIQSPAFGG-NAGDQTGFVIMILEDWDERDV---TAQEA 632
Cdd:pfam00873 560 VFVTSAQLPPGVSLDQTQRVMKQVEKI---LKEKPEVESvFAVTGFAFSGdNNGPNSGDAFISLKPWKERPGpekSVQAL 636
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 633 LNEVRQSLAGIPDVRVFPFMP------GFKGGSSEPVQFVLGGSDYTELQKWAELLKQAAEDSPMMEGADIDYSEKTPEL 706
Cdd:pfam00873 637 IERLRKALKQIPGANVFLFQPiqlrglGTISGFRSDLQVKIFGDDLDALDEARNQILAALAQLPGLSDVRSDGQEDQPQL 716
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 707 LVTVDKQRAAELGVSVSDISDTLEIMLGGRSETTFVDRGEEYDVYLRGDENSFNNANDLSQIYMRTQSGELVTLDTLTHI 786
Cdd:pfam00873 717 QVNIDREKAARLGVSIQDINDTLSTALGGSYVNDFPEGGRVYDVVVQLPEDFRSSPEDIGQLYVRNPYGKMIPLSAFAKI 796
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 787 EEVASSIRLSHYNKQKSVTIKANLMEGYTLGDALDFLDEQAIE-QLPGDISVSYSGESKDFKENQSSILVVFALAMLVAY 865
Cdd:pfam00873 797 EWGYGPPSINRYNGFRSIVISGNVAAGDSLGDAMEAMAQIAKQvKLPPGYGYTWTGQFEQEQLAGNSLPILIALALLVVF 876
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 866 LVLAAQFESFINPLVVMFTVPMGIFGGFLGLVLMSQGLNVYSQIGMIMLIGMVTKNGILIVEFANQLRDR-GIEFEKAII 944
Cdd:pfam00873 877 LVLAALYESWSDPLSIMLTVPLALVGALLALWLRGLPNSVYAQVGLILLIGLAVKNAILMVEFANELREQeGKSLEEAIL 956
|
970 980 990 1000 1010 1020
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1516000590 945 DASARRLRPIMMTAFTTLAGAIPLITSTGAGYESRVAVGTVIFFGMGFATLVTLFVIPAMYRLI 1008
Cdd:pfam00873 957 EACRLRLRPILMTALAAILGVLPLALSTGAGSELQQPLGIVVFGGLVTSTVLTLLVVPVFYVLF 1020
|
|
| PRK09579 |
PRK09579 |
multidrug efflux RND transporter permease subunit; |
1-1020 |
0e+00 |
|
multidrug efflux RND transporter permease subunit;
Pssm-ID: 169983 [Multi-domain] Cd Length: 1017 Bit Score: 659.22 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 1 MLLSDVSVKRPVAAVVLSLLLVVFGIVSFNKLAVREMPDIESPVVSISTRYEGASATIIESQITANLEDQLSGISGIDEI 80
Cdd:PRK09579 1 MAFTDPFIRRPVLASVVSLLIVLLGFQAWSKLQIRQYPQMENALITVTTAYPGANAETIQGYITQPLQQSLASAEGIDYM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 81 ESTTRNGMSRITITFELGYDLNTGVSDVRDAVARAQRSLPDEADDPIVYKNNGSGEASVYINLSSTEMDRTQLTDYTERV 160
Cdd:PRK09579 81 TSVSRQNFSIISIYARIGADSDRLFTELLAKANEVKNQLPQDAEDPVLSKEAADASALMYISFYSEEMSNPQITDYLSRV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 161 LIDRFSLISGVSSVDISGGLYKVMYVKLKPAQMAGRGVTTSDITSALNSENIESPGGEVRNDAIVMSVRTARSYTEAEDF 240
Cdd:PRK09579 161 IQPKLATLPGMAEAEILGNQVFAMRLWLDPVKLAGFGLSAGDVTQAVRRYNFLSAAGEVKGEYVVTSINASTELKSAEAF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 241 EYLVVKRASDnTPIYLKDVADVYIGAENENSTFKSDGVVNVSMGIVPQSDANPLEVADLVHKEVEAIQKFLPDGTRLAVD 320
Cdd:PRK09579 241 AAIPVKTSGD-SRVLLGDVARVEMGAENYDSISSFDGIPSVYIGIKATPSANPLDVIKEVRAIMPELESQLPPNLKVSIA 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 321 YDSTVFIDRSISEVYSTLFITGGLVILVLYIFIGQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALILSIGLVV 400
Cdd:PRK09579 320 YDATLFIQASIDEVVKTLGEAVLIVIVVVFLFLGALRSVLIPVVTIPLSMIGVLFFMQMMGYSINLLTLLAMVLAIGLVV 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 401 DDAIVVVENIFHHIERGESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMSVIFSSLVALT 480
Cdd:PRK09579 400 DDAIVVVENIHRHIEEGKSPFDAALEGAREIAMPVVSMTITLAAVYAPIGFLTGLTGALFKEFALTLAGAVIISGIVALT 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 481 LTPVLGSKILKANVKPNRFNLFVERVFGKLESGYRSVLRRALNWRWAAPIIIIACMGGSYGLMQQVPSQLTPQEDRGVIF 560
Cdd:PRK09579 480 LSPMMCALLLRHEENPSGLAHRLDRLFERLKQRYQRALHGTLNTRPVVLVFAVIVLALIPVLLKFTQSELAPEEDQGIIF 559
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 561 AFVRGADATSYNRMSANMDIVEErlmpllgqgFLKSFSIQSPAF--GGNAGDQTGFVIMILEDWDERDVTAQEALNEVRQ 638
Cdd:PRK09579 560 MMSSSPQPANLDYLNAYTDEFTP---------IFKSFPEYYSSFqiNGFNGVQSGIGGFLLKPWNERERTQMELLPLVQA 630
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 639 SLAGIPDVRVFPF-MPGFKG-GSSEPVQFVLG-GSDYTELQKWAELLKQAAEDSPMMEGADIDYSEKTPELLVTVDKQRA 715
Cdd:PRK09579 631 KLEEIPGLQIFGFnLPSLPGtGEGLPFQFVINtANDYESLLQVAQRVKQRAQESGKFAFLDIDLAFDKPEVVVDIDRAKA 710
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 716 AELGVSVSDISDTLEIMLGGRSETTFVDRGEEYDVYLRGDENSFNNANDLSQIYMRTQSGELVTLDTLTHIEEVASSIRL 795
Cdd:PRK09579 711 AQMGVSMQDLGGTLATLLGEGEINRFTIDGRSYKVIAQVERPYRDNPGWLNNYYVKNEQGQLLPLSTLITLSDRARPRQL 790
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 796 SHYNKQKSVTIKANLMegYTLGDALDFLDEQAIEQLPGDISVSYSGESKDFKENQSSILVVFALAMLVAYLVLAAQFESF 875
Cdd:PRK09579 791 NQFQQLNSAIISGFPI--VSMGEAIETVQQIAREEAPEGFAFDYAGASRQYVQEGSALWVTFGLALAIIFLVLAAQFESF 868
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 876 INPLVVMFTVPMGIFGGFLGLVLMSQGLNVYSQIGMIMLIGMVTKNGILIVEFANQLR-DRGIEFEKAIIDASARRLRPI 954
Cdd:PRK09579 869 RDPLVILVTVPLSICGALIPLFLGVSSMNIYTQVGLVTLIGLISKHGILIVEFANQLRhEQGLSRREAIEEAAAIRLRPV 948
|
970 980 990 1000 1010 1020
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1516000590 955 MMTAFTTLAGAIPLITSTGAGYESRVAVGTVIFFGMGFATLVTLFVIPAMYRLISGSTRSPGHVEA 1020
Cdd:PRK09579 949 LMTTAAMVFGMVPLILATGAGAVSRFDIGLVIATGMSIGTLFTLFVLPCIYTLLAKPDAAPGVAQA 1014
|
|
| 2A0602 |
TIGR00915 |
The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Proteins ... |
25-1021 |
0e+00 |
|
The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]
Pssm-ID: 273335 [Multi-domain] Cd Length: 1044 Bit Score: 646.02 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 25 GIVSFNKLAVREMPDIESPVVSISTRYEGASATIIESQITANLEDQLSGISGIDEIESTTRN-GMSRITITFELGYDLNT 103
Cdd:TIGR00915 23 GTLSILSLPVSQYPSIAPPAITVSASYPGASAQTVQDTVTQVIEQNMNGIDGLRYMSSSSDSdGSMTITLTFEQGTDPDI 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 104 GVSDVRDAVARAQRSLPDEADDPIVYKNNGSGEASVYINLSST--EMDRTQLTDYTERVLIDRFSLISGVSSVDISGGLY 181
Cdd:TIGR00915 103 AQVQVQNKLQLATPLLPQEVQRQGVRVEKASSNFLMVIGLVSDdgSMTKEDLSDYAASNMVDPLSRLEGVGDVQLFGSQY 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 182 kVMYVKLKPAQMAGRGVTTSDITSALNSENIESPGGE------VRNDAIVMSVRTARSYTEAEDFEYLVVKRASDNTPIY 255
Cdd:TIGR00915 183 -AMRIWLDPAKLNSYQLTPADVISAISAQNAQISAGQlgglpaVPGQQLNATIIAQTRLQTPEQFENILLKVNTDGSQVR 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 256 LKDVADVYIGAENENSTFKSDGVVNVSMGIVPQSDANPLEVADLVHKEVEAIQKFLPDGTRLAVDYDSTVFIDRSISEVY 335
Cdd:TIGR00915 262 LKDVARVELGGENYSISARFNGKPASGLAIKLATGANALDTAKAVKAELAVLEPFFPQGMKYVYPYDTTPFVEASIEEVV 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 336 STLFITGGLVILVLYIFIGQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHI- 414
Cdd:TIGR00915 342 HTLIEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFAMVLAIGLLVDDAIVVVENVERVMa 421
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 415 ERGESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMSVIFSSLVALTLTPVLGSKILKA-- 492
Cdd:TIGR00915 422 EEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPie 501
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 493 -----NVKPNRFNLFvERVFGKLESGYRSVLRRALNWRWAAPIIIIACMGGSYGLMQQVPSQLTPQEDRGVIFAFVRGAD 567
Cdd:TIGR00915 502 kgehhEKKGGFFGWF-NRMFDSSTHGYENGVGKILRRRGRYLLVYVLLVGGMVFLFVRLPTSFLPDEDQGVFMTIVQLPA 580
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 568 ATSYNRMSANMDIVEERLMPLLGQGFLKSFSIQSPAFGGNaGDQTGFVIMILEDWDERDV---TAQEALNEVRQSLAGIP 644
Cdd:TIGR00915 581 GATAERTQAVLAQVTKYLLAKEKANVESVFTVNGFSFAGR-GQNMGMAFIRLKDWEERTGkenSVFAIAGRATGHFMQIK 659
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 645 DVRVFPFMP------GFKGGSSEPVQFVLGGSDYTELQKWAELLKQAAEdSPMMEGADIDYSEKTPELLVTVDKQRAAEL 718
Cdd:TIGR00915 660 DAMVIAFVPpailelGNATGFDFFLQDRAGLGHEALLQARNQLLGLAAQ-NPALTRVRPNGLEDEPQLKIDIDREKAQAL 738
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 719 GVSVSDISDTLEIMLGGRSETTFVDRGEEYDVYLRGDENSFNNANDLSQIYMRTQSGELVTLDTLTHIEEVASSIRLSHY 798
Cdd:TIGR00915 739 GVSIADINTTLSTAWGSSYVNDFIDRGRVKRVYVQAEEDARMSPEDINKWYVRNASGEMVPFSAFATVRWEYGSPQLERY 818
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 799 NKQKSVTIKANLMEGYTLGDALDFLdEQAIEQLPGDISVSYSGESKDFKENQSSILVVFALAMLVAYLVLAAQFESFINP 878
Cdd:TIGR00915 819 NGLPSMEILGSAAPGVSTGQAMAAM-EAIAQKLPPGFGFSWTGMSYEERLSGSQAPALYALSLLVVFLCLAALYESWSIP 897
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 879 LVVMFTVPMGIFGGFLGLVLMSQGLNVYSQIGMIMLIGMVTKNGILIVEFANQLRDRGIEFEKAIIDASARRLRPIMMTA 958
Cdd:TIGR00915 898 VSVMLVVPLGIIGALLATTLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAKELMAQGKSIVEAALEAARLRLRPILMTS 977
|
970 980 990 1000 1010 1020
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1516000590 959 FTTLAGAIPLITSTGAGYESRVAVGTVIFFGMGFATLVTLFVIPAMYRLISG--STRSPGHVEAV 1021
Cdd:TIGR00915 978 LAFILGVVPLAISTGAGSGSQHAIGTGVFGGMVTATVLAIFFVPLFYVVVRRlfKRKAHEKEMSV 1042
|
|
| PRK10614 |
PRK10614 |
multidrug efflux system subunit MdtC; Provisional |
25-1005 |
1.39e-167 |
|
multidrug efflux system subunit MdtC; Provisional
Pssm-ID: 182589 [Multi-domain] Cd Length: 1025 Bit Score: 519.28 E-value: 1.39e-167
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 25 GIVSFNKLAVREMPDIESPVVSISTRYEGASATIIESQITANLEDQLSGISGIDEIESTTRNGMSRITITFELGYDLNTG 104
Cdd:PRK10614 25 GILGFRLLPVAPLPQVDFPVIMVSASLPGASPETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILQFDFDRDINGA 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 105 VSDVRDAVARAQRSLPDE-ADDPIVYKNNGSGEASVYINLSSTEMDRTQLTDYTERVLIDRFSLISGVSSVDISGGLYKV 183
Cdd:PRK10614 105 ARDVQAAINAAQSLLPSGmPSRPTYRKANPSDAPIMILTLTSDTYSQGQLYDFASTQLAQTISQIDGVGDVDVGGSSLPA 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 184 MYVKLKPAQMAGRGVTTSDITSALNSENIESPGGEVRNDAIVMSVRTARSYTEAEDFEYLVVkRASDNTPIYLKDVADVY 263
Cdd:PRK10614 185 VRVGLNPQALFNQGVSLDDVRQAISNANVRRPQGAVEDGTHRWQIQTNDELKTAAEYQPLII-HYNNGAAVRLGDVATVT 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 264 IGAENENSTFKSDGVVNVSMGIVPQSDANPLEVADLVHKEVEAIQKFLPDGTRLAVDYDSTVFIDRSISEVYSTLFITGG 343
Cdd:PRK10614 264 DSVQDVRNAGMTNAKPAILLMIRKLPEANIIQTVDRIRAKLPELRETIPAAIDLQIAQDRSPTIRASLEEVEQTLAISVA 343
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 344 LVILVLYIFIGQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHIERGESPLLA 423
Cdd:PRK10614 344 LVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENISRHLEAGMKPLQA 423
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 424 AYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMSVIFSSLVALTLTPVLGSKILKAN-VKPNRFNLF 502
Cdd:PRK10614 424 ALQGVREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLFREFAVTLSVAIGISLLVSLTLTPMMCAWLLKSSkPREQKRLRG 503
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 503 VERVFGKLESGYRSVLRRALNW-RWAApIIIIACMGGSYGLMQQVPSQLTPQEDRGVIFAFVRGADATSYNRMSANMdiv 581
Cdd:PRK10614 504 FGRMLVALQQGYGRSLKWVLNHtRWVG-VVLLGTIALNVWLYISIPKTFFPEQDTGRLMGFIQADQSISFQAMRGKL--- 579
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 582 eerlmpllgQGFLKSFSiQSPA------FGGNAGDQTGFVIMILEDWDERDVTAQEALNEVRQSLAGIPDVRVFpFMP-- 653
Cdd:PRK10614 580 ---------QDFMKIIR-DDPAvdnvtgFTGGSRVNSGMMFITLKPLSERSETAQQVIDRLRVKLAKEPGANLF-LMAvq 648
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 654 -----GFKGGSSepVQFVLGGSDYTELQKWAELLKQAAEDSPMMEGADIDYSEKTPELLVTVDKQRAAELGVSVSDISDT 728
Cdd:PRK10614 649 dirvgGRQSNAS--YQYTLLSDDLAALREWEPKIRKALAALPELADVNSDQQDKGAEMALTYDRDTMARLGIDVQAANSL 726
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 729 LEIMLGGRSETTFVDRGEEYDVYLRGDENSFNNANDLSQIYMRTQSGELVTLDTLTHIEEVASSIRLSHYNKQKSVTIKA 808
Cdd:PRK10614 727 LNNAFGQRQISTIYQPLNQYKVVMEVDPRYTQDISALEKMFVINNEGKAIPLSYFAKWQPANAPLSVNHQGLSAASTISF 806
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 809 NLMEGYTLGDALDFLdEQAIEQL--PGDISVSYSGESKDFKENQSSILVVFALAMLVAYLVLAAQFESFINPLVVMFTVP 886
Cdd:PRK10614 807 NLPTGKSLSDASAAI-ERAMTQLgvPSTVRGSFAGTAQVFQETMNSQLILILAAIATVYIVLGILYESYVHPLTILSTLP 885
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 887 MGIFGGFLGLVLMSQGLNVYSQIGMIMLIGMVTKNGILIVEFANQL-RDRGIEFEKAIIDASARRLRPIMMTAFTTLAGA 965
Cdd:PRK10614 886 SAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAqRNGNLTAQEAIFQACLLRFRPIMMTTLAALFGA 965
|
970 980 990 1000
....*....|....*....|....*....|....*....|
gi 1516000590 966 IPLITSTGAGYESRVAVGTVIFFGMGFATLVTLFVIPAMY 1005
Cdd:PRK10614 966 LPLVLSGGDGAELRQPLGITIVGGLVMSQLLTLYTTPVVY 1005
|
|
| CusA |
COG3696 |
Cu/Ag efflux pump CusA [Inorganic ion transport and metabolism]; |
24-1008 |
4.22e-166 |
|
Cu/Ag efflux pump CusA [Inorganic ion transport and metabolism];
Pssm-ID: 442911 [Multi-domain] Cd Length: 1031 Bit Score: 515.35 E-value: 4.22e-166
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 24 FGIVSFNKLAVREMPDIESPVVSISTRYEGASATIIESQITANLEDQLSGISGIDEIESTTRNGMSRITITFELGYDLNT 103
Cdd:COG3696 26 AGIYSLRRLPIDAFPDITNVQVQVITEAPGLSPEEVEQQVTYPIETALNGLPGVKEVRSISRFGLSVVTVIFEDGTDIYW 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 104 GVSDVRDAVARAQRSLPDEAD---DPIVyknNGSGEASVYInLSSTEMDRT--QLTDYTERVLIDRFSLISGVSSVDISG 178
Cdd:COG3696 106 ARQLVLERLQQVREQLPAGVTpelGPIS---TGLGEIYQYT-LESDPGKYSlmELRTLQDWVIRPQLRSVPGVAEVNSFG 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 179 GLYKVMYVKLKPAQMAGRGVTTSDITSALNSENIESPGG--EVRNDAIVmsVRTARSYTEAEDFEYLVVKrASDNTPIYL 256
Cdd:COG3696 182 GFVKQYQVLVDPAKLRAYGLTLDDVIEALERNNANVGGGyiERGGQEYL--VRGIGLIRSLEDIENIVVK-TRNGTPVLL 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 257 KDVADVYIGAENENSTFKSDGVVNVSMGIV-PQSDANPLEVADLVHKEVEAIQKFLPDGTRLAVDYDSTVFIDRSISEVY 335
Cdd:COG3696 259 RDVAEVRIGPAPRRGAATLNGEGEVVGGIVlMLKGENALEVIEAVKAKLAELKPSLPEGVKIVPFYDRSDLIDRAIHTVT 338
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 336 STLFITGGLVILVLYIFIGQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHIE 415
Cdd:COG3696 339 KNLLEGALLVILVLFLFLGNLRAALIVALAIPLSLLFAFIVMRLFGISANLMSLGGLAIDFGIIVDGAVVMVENILRRLE 418
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 416 R------GESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFT--EFSVLLAMsvIFSSLVALTLTPVLGS 487
Cdd:COG3696 419 EnraagtPRERLEVVLEAAREVRRPIFFATLIIILVFLPIFTLEGVEGKLFRpmALTVIFAL--LGALLLSLTLVPVLAS 496
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 488 KILKANV--KPNRFNLFVERVfgklesgYRSVLRRALNWRWAAPIIIIACMGGSYGLMQQVPSQLTPQEDRGVIFAFVRG 565
Cdd:COG3696 497 LLLRGKVpeKENPLVRWLKRL-------YRPLLRWALRHPKLVLAVALVLLVLALALFPRLGSEFLPELDEGDLLVMATL 569
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 566 ADATSYNRMSANMDIVEERlmpllgqgfLKSFS-IQSpaFGGNAG------DQTGF----VIMILEDWDE--RDVTAQEA 632
Cdd:COG3696 570 PPGISLEESVELGQQVERI---------LKSFPeVES--VVSRTGraedatDPMGVnmseTFVILKPRSEwrSGRTKEEL 638
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 633 LNEVRQSLAGIPDVRVFPFMP----------GFKGgssePVQFVLGGSDYTELQKWAELLKQAAEDSPMMEGADIDYSEK 702
Cdd:COG3696 639 IAEMREALEQIPGVNFNFSQPiqmrvdellsGVRA----DVAVKIFGDDLDVLRRLAEQIEAVLKTVPGAADVQVERVTG 714
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 703 TPELLVTVDKQRAAELGVSVSDISDTLEIMLGGRSETTFVDRGEEYDVYLRGDENSFNNANDLSQIYMRTQSGELVTLDT 782
Cdd:COG3696 715 LPQLDIRIDRDAAARYGLNVADVQDVVETAIGGKAVGQVYEGERRFDIVVRLPEELRDDPEAIRNLPIPTPSGAQVPLSQ 794
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 783 LTHIEEVASSIRLSHYNKQKSVTIKANLmEGYTLGdalDFLDE--QAIEQ---LPGDISVSYSGESKDFKENQSSILVVF 857
Cdd:COG3696 795 VADIEVVEGPNQISRENGRRRIVVQANV-RGRDLG---SFVAEaqAKVAEqvkLPPGYYIEWGGQFENLQRATARLAIVV 870
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 858 ALAMLVAYLVLAAQFESFINPLVVMFTVPMGIFGGFLGLVLMSQGLNVYSQIGMIMLIGMVTKNGILIVEFANQLRDRGI 937
Cdd:COG3696 871 PLALLLIFLLLYLAFGSVRDALLILLNVPFALIGGVLALWLRGMPLSVSAGVGFIALFGVAVLNGVVLVSYINQLRAEGL 950
|
970 980 990 1000 1010 1020 1030
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1516000590 938 EFEKAIIDASARRLRPIMMTAFTTLAGAIPLITSTGAGYE--SRVAvgTVIFFGMGFATLVTLFVIPAMYRLI 1008
Cdd:COG3696 951 DLREAIIEGALERLRPVLMTALVAALGLLPMALSTGPGSEvqRPLA--TVVIGGLITSTLLTLLVLPALYLLF 1021
|
|
| PRK10555 |
PRK10555 |
multidrug efflux RND transporter permease AcrD; |
25-1008 |
5.48e-163 |
|
multidrug efflux RND transporter permease AcrD;
Pssm-ID: 182544 [Multi-domain] Cd Length: 1037 Bit Score: 507.45 E-value: 5.48e-163
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 25 GIVSFNKLAVREMPDIESPVVSISTRYEGASATIIESQITANLEDQLSGISGIDEIESTTRN-GMSRITITFELGYDLNT 103
Cdd:PRK10555 23 GTLAIFSLPVEQYPDLAPPNVRITANYPGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGtGQASVTLSFKAGTDPDE 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 104 GVSDVRDAVARAQRSLPDEADDPIVYKNNGSGEASVYINLSSTE--MDRTQLTDYTERVLIDRFSLISGVSSVDISGGLY 181
Cdd:PRK10555 103 AVQQVQNQLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDgsMDKQDIADYVASNIQDPLSRVNGVGDIDAYGSQY 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 182 KvMYVKLKPAQMAGRGVTTSDITSALNSENIESPGGE------VRNDAIVMSVRTARSYTEAEDFEYLVVKRASDNTPIY 255
Cdd:PRK10555 183 S-MRIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQlggtpsVDKQALNATINAQSLLQTPEQFRDITLRVNQDGSEVT 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 256 LKDVADVYIGAENENSTFKSDGVVNVSMGIVPQSDANPLEVADLVHKEVEAIQKFLPDGTRLAVDYDSTVFIDRSISEVY 335
Cdd:PRK10555 262 LGDVATVELGAEKYDYLSRFNGKPASGLGVKLASGANEMATAKLVLNRLDELAQYFPHGLEYKVAYETTSFVKASIEDVV 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 336 STLFITGGLVILVLYIFIGQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHI- 414
Cdd:PRK10555 342 KTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENVERIMs 421
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 415 ERGESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMSVIFSSLVALTLTPVLGSKILKANV 494
Cdd:PRK10555 422 EEGLTPREATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLK 501
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 495 KPNR---------FNLFVERVFGKLESGYRSVLRRALNWRwaapIIIIACMGGSYGLMQQVPSQLTPQEDRGVIFAFVRG 565
Cdd:PRK10555 502 KGEHhgqkgffgwFNRMFNRNAERYEKGVAKILHRSLRWI----LIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSVQL 577
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 566 ADATSYNRMSANMDIVEERLMPLLGQGFLKSFSIQSPAFGGNaGDQTGFVIMILEDWDERDV---TAQEALNEVRQSLAG 642
Cdd:PRK10555 578 PSGSTQQQTLKVVEKVEKYYFTHEKDNVMSVFATVGSGPGGN-GQNVARMFIRLKDWDERDSktgTSFAIIERATKAFNK 656
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 643 IPDVRVFPFMPGFKGGSSEPVQFVL-----GGSDYTELQKWAELLKQAAEDSPMMEGADIDYSEKTPELLVTVDKQRAAE 717
Cdd:PRK10555 657 IKEARVIASSPPAISGLGSSAGFDMelqdhAGAGHDALMAARNQLLALAAKNPELTRVRHNGLDDSPQLQIDIDQRKAQA 736
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 718 LGVSVSDISDTLEIMLGGRSETTFVDRGEEYDVYLRGDENSFNNANDLSQIYMRTQSGELVTLDTLTHIEEVASSIRLSH 797
Cdd:PRK10555 737 LGVSIDDINDTLQTAWGSSYVNDFMDRGRVKKVYVQAAAPYRMLPDDINLWYVRNKDGGMVPFSAFATSRWETGSPRLER 816
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 798 YNKQKSVTIKANLMEGYTLGDALDFLdEQAIEQLPGDISVSYSGESKDFKENQSSILVVFALAMLVAYLVLAAQFESFIN 877
Cdd:PRK10555 817 YNGYSAVEIVGEAAPGVSTGTAMDIM-ESLVKQLPNGFGLEWTAMSYQERLSGAQAPALYAISLLVVFLCLAALYESWSV 895
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 878 PLVVMFTVPMGIFGGFLGLVLMSQGLNVYSQIGMIMLIGMVTKNGILIVEFANQLRDRGIEFEKAIIDASARRLRPIMMT 957
Cdd:PRK10555 896 PFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANEMNQKGHDLFEATLHASRQRLRPILMT 975
|
970 980 990 1000 1010
....*....|....*....|....*....|....*....|....*....|.
gi 1516000590 958 AFTTLAGAIPLITSTGAGYESRVAVGTVIFFGMGFATLVTLFVIPAMYRLI 1008
Cdd:PRK10555 976 SLAFIFGVLPMATSTGAGSGSQHAVGTGVMGGMISATILAIFFVPLFFVLV 1026
|
|
| PRK10503 |
PRK10503 |
MdtB/MuxB family multidrug efflux RND transporter permease subunit; |
25-1007 |
5.18e-162 |
|
MdtB/MuxB family multidrug efflux RND transporter permease subunit;
Pssm-ID: 182501 [Multi-domain] Cd Length: 1040 Bit Score: 505.03 E-value: 5.18e-162
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 25 GIVSFNKLAVREMPDIESPVVSISTRYEGASATIIESQITANLEDQLSGISGIDEIESTTRNGMSRITITFELGYDLNTG 104
Cdd:PRK10503 34 GIIGYRALPVSALPEVDYPTIQVVTLYPGASPDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVA 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 105 VSDVRDAVARAQRSLPDEADDPIVY-KNNGSGEASVYINLSSTEMDRTQLTDYTERVLIDRFSLISGVSSVDISGGLYKV 183
Cdd:PRK10503 114 EQEVQAAINAATNLLPSDLPNPPVYsKVNPADPPIMTLAVTSTAMPMTQVEDMVETRVAQKISQVSGVGLVTLSGGQRPA 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 184 MYVKLKPAQMAGRGVTTSDITSALNSENIESPGGEVRNDAIVMSVRTARSYTEAEDFEYLVVKRaSDNTPIYLKDVADVY 263
Cdd:PRK10503 194 VRVKLNAQAIAALGLTSETVRTAITGANVNSAKGSLDGPTRAVTLSANDQMQSAEEYRQLIIAY-QNGAPIRLGDVATVE 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 264 IGAENENSTFKSDGVVNVSMGIVPQSDANPLEVADLVHKEVEAIQKFLPDGTRLAVDYDSTVFIDRSISEVYSTLFITGG 343
Cdd:PRK10503 273 QGAENSWLGAWANKQQAIVMNVQRQPGANIIATADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDTQFELMLAIA 352
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 344 LVILVLYIFIGQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHIERGESPLLA 423
Cdd:PRK10503 353 LVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIATGFVVDDAIVVIENISRYIEKGEKPLAA 432
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 424 AYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMSVIFSSLVALTLTPVLGSKILKAN--VKPNRFNL 501
Cdd:PRK10503 433 ALKGAGEIGFTIISLTFSLIAVLIPLLFMGDIVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSQEslRKQNRFSR 512
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 502 FVERVFGKLESGYRSVLRRALNWRWAAPIIIIACMGGSYGLMQQVPSQLTPQEDRGVIFAFVRGADATSYNRMSANMDIV 581
Cdd:PRK10503 513 ASERMFDRVIAAYGRGLAKVLNHPWLTLSVALSTLLLTVLLWIFIPKGFFPVQDNGIIQGTLQAPQSSSFANMAQRQRQV 592
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 582 EERLMpllgqgflKSFSIQS-PAF----GGNAGDQTGFVIMILEDWDERDVTAQEALNEVRQSLAGIPDVRVF--PF--M 652
Cdd:PRK10503 593 ADVIL--------QDPAVQSlTSFvgvdGTNPSLNSARLQINLKPLDERDDRVQKVIARLQTAVAKVPGVDLYlqPTqdL 664
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 653 PGFKGGSSEPVQFVLGGSDYTELQKWAELLKQAAEDSPMMEGADIDYSEKTPELLVTVDKQRAAELGVSVSDISDTLEIM 732
Cdd:PRK10503 665 TIDTQVSRTQYQFTLQATSLDALSTWVPKLMEKLQQLPQLSDVSSDWQDKGLVAYVNVDRDSASRLGISMADVDNALYNA 744
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 733 LGGRSETTFVDRGEEYDVYLRGDENSFNNANDLSQIYMRTQSGELVTLDTLTHIEEVASSIRLSHYNKQKSVTIKANLME 812
Cdd:PRK10503 745 FGQRLISTIYTQANQYRVVLEHNTENTPGLAALDTIRLTSSDGGVVPLSSIATIEQRFGPLSINHLDQFPSTTISFNVPD 824
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 813 GYTLGDALDFLD--EQAIeQLPGDISVSYSGESKDFKENQSSILVVFALAMLVAYLVLAAQFESFINPLVVMFTVPMGIF 890
Cdd:PRK10503 825 GYSLGDAVQAIMdtEKTL-NLPADITTQFQGSTLAFQSALGSTVWLIVAAVVAMYIVLGVLYESFIHPITILSTLPTAGV 903
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 891 GGFLGLVLMSQGLNVYSQIGMIMLIGMVTKNGILIVEFA-NQLRDRGIEFEKAIIDASARRLRPIMMTAFTTLAGAIPLI 969
Cdd:PRK10503 904 GALLALMIAGSELDVIAIIGIILLIGIVKKNAIMMIDFAlAAEREQGMSPRDAIYQACLLRFRPILMTTLAALLGALPLM 983
|
970 980 990
....*....|....*....|....*....|....*...
gi 1516000590 970 TSTGAGYESRVAVGTVIFFGMGFATLVTLFVIPAMYRL 1007
Cdd:PRK10503 984 LSTGVGAELRRPLGICMVGGLIVSQVLTLFTTPVIYLL 1021
|
|
| PRK09577 |
PRK09577 |
multidrug efflux RND transporter permease subunit; |
25-1008 |
4.10e-154 |
|
multidrug efflux RND transporter permease subunit;
Pssm-ID: 169981 [Multi-domain] Cd Length: 1032 Bit Score: 483.97 E-value: 4.10e-154
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 25 GIVSFNKLAVREMPDIESPVVSISTRYEGASATIIESQITANLEDQLSGISGIDEIESTTRNGMSRITITFELGYDLNTG 104
Cdd:PRK09577 23 GIFAIRALPVAQYPDIAPPVVSIYATYPGASAQVVEESVTALIEREMNGAPGLLYTSATSSAGQASLSLTFKQGVNADLA 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 105 VSDVRDAVARAQRSLPD--EADDPIVYKNNGSGEASVYINLSSTEMDRTQLTDYTERVLIDRFSLISGVSSVDISGGLYk 182
Cdd:PRK09577 103 AVEVQNRLKTVEARLPEpvRRDGIQVEKAADNIQLIVSLTSDDGRLTGVELGEYASANVLQALRRVEGVGKVQFWGAEY- 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 183 VMYVKLKPAQMAGRGVTTSDITSALNSENIESPGGEVRNDA------IVMSVRTARSYTEAEDFEYLVVKRASDNTPIYL 256
Cdd:PRK09577 182 AMRIWPDPVKLAALGLTASDIASAVRAHNARVTIGDIGRSAvpdsapIAATVFADAPLKTPEDFGAIALRARADGSALYL 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 257 KDVADVYIGAENENSTFKSDGVVNVSMGIVPQSDANPLEVADLVHKEVEAIQKFLPDGTRLAVDYDSTVFIDRSISEVYS 336
Cdd:PRK09577 262 RDVARIEFGGNDYNYPSYVNGKTATGMGIKLAPGSNAVATEKRVRATMDELSRYFPPGVKYQIPYETSSFVRVSMNKVVT 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 337 TLFITGGLVILVLYIFIGQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFH-HIE 415
Cdd:PRK09577 342 TLIEAGVLVFLVMFLFMQNFRATLIPTLVVPVALLGTFGVMLAAGFSINVLTMFGMVLAIGILVDDAIVVVENVERlMVE 421
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 416 RGESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMSVIFSSLVALTLTPVLGSKILK---A 492
Cdd:PRK09577 422 EGLSPYDATVKAMKQISGAIVGITVVLTSVFVPMAFFGGAVGNIYRQFALSLAVSIGFSAFLALSLTPALCATLLKpvdG 501
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 493 NVKPNR-----FNLFVERVFGKLESGYRSVLRRALNWrwaapIIIIACMGGSYGLM-QQVPSQLTPQEDRGVIFAFVRGA 566
Cdd:PRK09577 502 DHHEKRgffgwFNRFVARSTQRYATRVGAILKRPLRW-----LVVYGALTAAAALLfTRLPTAFLPDEDQGNFMVMVIRP 576
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 567 DATSYNRMSANMDIVEERLM---PLLGQGFLKSFSIqspaFGgnAGDQTGFVIMILEDWDERDVTAQEA---LNEVRQSL 640
Cdd:PRK09577 577 QGTPLAETMQSVREVESYLRrhePVAYTFALGGFNL----YG--EGPNGGMIFVTLKDWKERKAARDHVqaiVARINERF 650
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 641 AGIPDVRVF----PFMPGFkgGSSEPVQFVL---GGSDYTELQKWAELLKQAAEDSPMMEGADIDYSEKTPELLVTVDKQ 713
Cdd:PRK09577 651 AGTPNTTVFamnsPALPDL--GSTSGFDFRLqdrGGLGYAAFVAAREQLLAEGAKDPALTDLMFAGTQDAPQLKLDIDRA 728
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 714 RAAELGVSVSDISDTLEIMLGGRSETTFVDRGEEYDVYLRGDENSFNNANDLSQIYMRTQSGELVTLDTLTHIEEVASSI 793
Cdd:PRK09577 729 KASALGVSMDEINTTLAVMFGSDYIGDFMHGSQVRRVIVQADGRHRLDPDDVKKLRVRNAQGEMVPLAAFATLHWTLGPP 808
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 794 RLSHYNKQKSVTIKANLMEGYTLGDALDFLdEQAIEQLPGDISVSYSGESKDFKENQSSILVVFALAMLVAYLVLAAQFE 873
Cdd:PRK09577 809 QLTRYNGYPSFTINGSAAPGHSSGEAMAAI-ERIAATLPAGIGYAWSGQSFEERLSGAQAPMLFALSVLVVFLALAALYE 887
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 874 SFINPLVVMFTVPMGIFGGFLGLVLMSQGLNVYSQIGMIMLIGMVTKNGILIVEFANQLRDRGIEFEKAIIDASARRLRP 953
Cdd:PRK09577 888 SWSIPFAVMLVVPLGVIGAVLGVTLRGMPNDIYFKVGLIATIGLSAKNAILIVEVAKDLVAQRMSLADAALEAARLRLRP 967
|
970 980 990 1000 1010
....*....|....*....|....*....|....*....|....*....|....*
gi 1516000590 954 IMMTAFTTLAGAIPLITSTGAGYESRVAVGTVIFFGMGFATLVTLFVIPAMYRLI 1008
Cdd:PRK09577 968 IVMTSLAFGVGVLPLAFASGAASGAQIAIGTGVLGGVITATVLAVFLVPLFFVVV 1022
|
|
| PRK15127 |
PRK15127 |
multidrug efflux RND transporter permease subunit AcrB; |
25-1005 |
2.79e-149 |
|
multidrug efflux RND transporter permease subunit AcrB;
Pssm-ID: 185081 [Multi-domain] Cd Length: 1049 Bit Score: 471.70 E-value: 2.79e-149
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 25 GIVSFNKLAVREMPDIESPVVSISTRYEGASATIIESQITANLEDQLSGISGIDEIESTT-RNGMSRITITFELGYDLNT 103
Cdd:PRK15127 23 GGLAILKLPVAQYPTIAPPAVTISASYPGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSdSTGTVQITLTFESGTDADI 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 104 GVSDVRDAVARAQRSLPDEADDPIVYKNNGSGEASVYINLSSTE--MDRTQLTDYTERVLIDRFSLISGVSSVDISGGLY 181
Cdd:PRK15127 103 AQVQVQNKLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDgtMTQEDISDYVAANMKDPISRTSGVGDVQLFGSQY 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 182 kVMYVKLKPAQMAGRGVTTSDITSALNSENIESPGGE------VRNDAIVMSVRTARSYTEAEDFEYLVVKRASDNTPIY 255
Cdd:PRK15127 183 -AMRIWMNPNELNKFQLTPVDVINAIKAQNAQVAAGQlggtppVKGQQLNASIIAQTRLTSTEEFGKILLKVNQDGSRVR 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 256 LKDVADVYIGAENENSTFKSDGVVNVSMGIVPQSDANPLEVADLVHKEVEAIQKFLPDGTRLAVDYDSTVFIDRSISEVY 335
Cdd:PRK15127 262 LRDVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKISIHEVV 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 336 STLFITGGLVILVLYIFIGQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFH-HI 414
Cdd:PRK15127 342 KTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERvMA 421
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 415 ERGESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMSVIFSSLVALTLTPVLGSKILKANV 494
Cdd:PRK15127 422 EEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIA 501
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 495 KPNR------FNLFVERVFGKLESGYRSVLRRALNWRWAAPIIIIACMGGSYGLMQQVPSQLTPQEDRGVIFAFVRGADA 568
Cdd:PRK15127 502 KGDHgegkkgFFGWFNRMFEKSTHHYTDSVGNILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFLTMVQLPAG 581
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 569 TSYNRMSANMDIVEERLMPLLGQGFLKSFSIQSPAFGGNaGDQTGFVIMILEDWDER---DVTAQEALNEVRQSLAGIPD 645
Cdd:PRK15127 582 ATQERTQKVLNEVTDYYLTKEKNNVESVFAVNGFGFAGR-GQNTGIAFVSLKDWADRpgeENKVEAITMRATRAFSQIKD 660
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 646 VRVFPF-MPGF-KGGSSEPVQFVL---GGSDYTEL-QKWAELLKQAAEDSPMMEGADIDYSEKTPELLVTVDKQRAAELG 719
Cdd:PRK15127 661 AMVFAFnLPAIvELGTATGFDFELidqAGLGHEKLtQARNQLLGEAAKHPDMLVGVRPNGLEDTPQFKIDIDQEKAQALG 740
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 720 VSVSDISDTLEIMLGGRSETTFVDRGEEYDVYLRGDENSFNNANDLSQIYMRTQSGELVTLDTLTHIEEVASSIRLSHYN 799
Cdd:PRK15127 741 VSISDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYRMLPDDIGDWYVRAADGQMVPFSAFSSSRWEYGSPRLERYN 820
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 800 KQKSVTIKANLMEGYTLGDALDFLDEQAiEQLPGDISVSYSGES--KDFKENQSSILvvFALAMLVAYLVLAAQFESFIN 877
Cdd:PRK15127 821 GLPSMEILGQAAPGKSTGEAMELMEELA-SKLPTGVGYDWTGMSyqERLSGNQAPAL--YAISLIVVFLCLAALYESWSI 897
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 878 PLVVMFTVPMGIFGGFLGLVLMSQGLNVYSQIGMIMLIGMVTKNGILIVEFANQLRDR-GIEFEKAIIDASARRLRPIMM 956
Cdd:PRK15127 898 PFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKeGKGLIEATLEAVRMRLRPILM 977
|
970 980 990 1000
....*....|....*....|....*....|....*....|....*....
gi 1516000590 957 TAFTTLAGAIPLITSTGAGYESRVAVGTVIFFGMGFATLVTLFVIPAMY 1005
Cdd:PRK15127 978 TSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATVLAIFFVPVFF 1026
|
|
| 2A0601 |
TIGR00914 |
heavy metal efflux pump, CzcA family; This model represents a family of H+/heavy metal cation ... |
25-1010 |
1.93e-104 |
|
heavy metal efflux pump, CzcA family; This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Detoxification, Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 129992 [Multi-domain] Cd Length: 1051 Bit Score: 351.37 E-value: 1.93e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 25 GIVSFNKLAVREMPDIESPVVSISTRYEGASATIIESQITANLEDQLSGISGIDEIESTTRNGMSRITITFELGYDLNTG 104
Cdd:TIGR00914 27 GIWSYNRLPIDAVPDITNVQVQINTSAPGYSPLEVEQRVTYPIETAMAGLPGLETTRSLSRYGLSQVTVIFKDGTDLYFA 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 105 VSDVRDAVARAQRSLPDEADDPIVYKNNGSGEASVY--INLSSTEMDRTQLTDYTE-RVLID---RFSL--ISGVSSVDI 176
Cdd:TIGR00914 107 RQLVNERLQQARDNLPEGVSPEMGPISTGLGEIFLYtvEAEEGARKKDGGAYTLTDlRTIQDwiiRPQLrtVPGVAEVNS 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 177 SGGLYKVMYVKLKPAQMAGRGVTTSDITSALNSENIESPGGEVRNDAIVMSVRTARSYTEAEDFEYLVVKrASDNTPIYL 256
Cdd:TIGR00914 187 IGGYVKQFLVAPDPEKLAAYGLSLADVVNALERNNQNVGAGYIERRGEQYLVRAPGQVQSMDDIRNIVIA-TGEGVPIRI 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 257 KDVADVYIGAE------NENSTFKSDGVVNVSMGivpqsdANPLEVADLVHKEVEAIQKFLPDGTRLAVDYDSTVFIDRS 330
Cdd:TIGR00914 266 RDVARVQIGKElrtgaaTENGKEVVLGTVFMLIG------ENSRTVAQAVGDKLETINKTLPEGVEIVTTYDRSQLVDAA 339
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 331 ISEVYSTLFITGGLVILVLYIFIGQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALilSIGLVVDDAIVVVENI 410
Cdd:TIGR00914 340 IATVKKNLLEGALLVIVILFLFLGNIRAALIAATVIPLSLLITFIGMVFQGISANLMSLGAL--DFGLIVDGAVVIVENA 417
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 411 FHHIERG----------ESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMSVIFSSLVALT 480
Cdd:TIGR00914 418 HRRLAEAqhhhgrqltlKERLHEVFAASREVRRPLIFGQLIITLVFLPIFTLTGVEGKMFHPMAFTVVLALAGAMILSLT 497
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 481 LTPVLGSKILKANV--KPNRFNLFVERvfgklesGYRSVLRRALNWRWAAPIIIIACMGGSYGLMQQVPSQLTPQEDRGV 558
Cdd:TIGR00914 498 FVPAAVALFIRGKVaeKENRLMRVLKR-------RYEPLLERVLAWPAVVLGAAAVSIVLVVWIASRVGGEFIPSLNEGD 570
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 559 IFAFVRGADATSYNRMSANMDIVEERLM--PLLGQGFLK--SFSIQSPAFGGNAGDQTgfvIMI--LEDWDERDVTAQEA 632
Cdd:TIGR00914 571 LAYQALRIPGTSLAQSVAMQQTLEKLIKsfPEVARVFAKtgTAEIATDPMPPNASDTY---IILkpESQWPEGKKTKEDL 647
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 633 LNEVRQSLAGIPDvRVFPFMPGFK-------GGSSEPVQFVLGGSDYTELQKWAELLKQAAEDSPMMEGADIDYSEKTPE 705
Cdd:TIGR00914 648 IEEIQEATVRIPG-NNYEFTQPIQmrfneliSGVRSDVAVKVFGDDLDDLDATAEKISAVLKGVPGAADVKVEQTTGLPY 726
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 706 LLVTVDKQRAAELGVSVSDISDTLEIMLGGRSETTFVDRGEEYDVYLRGDENSFNNANDLSQIYMRTQSGEL-----VTL 780
Cdd:TIGR00914 727 LTVEIDREKAARYGLTVGDVQDTVATAVGGRMSGETFEGDRRFDIVIRLPESLRESPQALRQLPIPLPLSEDarkqfIPL 806
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 781 DTLTHIEEVASSIRLSHYNKQKSVTIKANLmEGYTLGDALDFLdEQAIE---QLPGDISVSYSGESKDFKENQSSILVVF 857
Cdd:TIGR00914 807 SDVADLRVSPGPNQISRENGKRRVVVSANV-RGRDLGSFVDDA-KKAIAeqvKLPPGYWITWGGQFEQLQSATKRLQIVV 884
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 858 ALAMLVAYLVLAAQFESFINPLVVMFTVPMGIFGGFLGLVLMSQGLNVYSQIGMIMLIGMVTKNGILIVEFANQLRDRGI 937
Cdd:TIGR00914 885 PVTLLLIFVLLYAAFGNVKDALLVFTGIPFALTGGVFALWLRGIPLSISAAVGFIALSGVAVLNGLVMISFIRKLLEEGP 964
|
970 980 990 1000 1010 1020 1030
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1516000590 938 EFEKAIIDASARRLRPIMMTAFTTLAGAIPLITSTGAGYESRVAVGTVIFFGMGFATLVTLFVIPAMYRLISG 1010
Cdd:TIGR00914 965 SLDEAVYEGALTRVRPVLMTALVASLGFVPMAIATGTGAEVQRPLATVVIGGIITATLLTLFVLPALYRLVHR 1037
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
225-1008 |
1.27e-24 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 110.72 E-value: 1.27e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 225 VMSVRTARsYTEAEDFEYLVVKRASDNTPIYLKDVADVYIGAENE----NSTFKSDG---VVNVSmgIVPQSDANPLEVA 297
Cdd:COG1033 104 VTSLTNVR-ATEGTEDGLTVEPLIPDELPASPEELAELREKVLSSplyvGRLVSPDGkatLIVVT--LDPDPLSSDLDRK 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 298 DLVHKEVEAIQKFLPDGTRLAV---DYDSTVFIDRSISEVYSTLFITGGLVILVLYIFIGQARATLIPAVTVPVSLISSF 374
Cdd:COG1033 181 EVVAEIRAIIAKYEDPGVEVYLtgfPVLRGDIAEAIQSDLAIFFPLALLLILLLLFLFFRSLRGVLLPLLVVLLAVIWTL 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 375 IAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHIERGESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDg 454
Cdd:COG1033 261 GLMGLLGIPLSPLTILVPPLLLAIGIDYGIHLLNRYREERRKGLDKREALREALRKLGPPVLLTSLTTAIGFLSLLFSD- 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 455 mVGlLFTEFSVLLAMSVIFSSLVALTLTPVLGS--KILKANVKPNRFNLFVERVFGKLEsgyrsvlRRALNWRWAAPIII 532
Cdd:COG1033 340 -IP-PIRDFGIVAAIGVLLAFLTSLTLLPALLSllPRPKPKTRRLKKPPELGRLLAKLA-------RFVLRRPKVILVVA 410
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 533 IACMGGSYGLMQQVPsqltpqedrgVIFAFVRGADATSynRMSANMDIVEERlmpllgqgflksfsiqspaFGGnagdQT 612
Cdd:COG1033 411 LVLAVVSLYGISRLK----------VEYDFEDYLPEDS--PIRQDLDFIEEN-------------------FGG----SD 455
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 613 GFVIMIleDWDERD-VTAQEALNEVRqslagipdvrvfpfmpgfkggssepvqfvlggsdytELQKWAellkqaaedspm 691
Cdd:COG1033 456 PLEVVV--DTGEPDgLKDPEVLKEID------------------------------------RLQDYL------------ 485
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 692 megadidysEKTPELLvtvdkqraaelgvSVSDISDTLEIMLGGrsettfvdrgeeydvYLRGDENSF---NNANDLSQI 768
Cdd:COG1033 486 ---------ESLPEVG-------------KVLSLADLVKELNQA---------------LNEGDPKYYalpESRELLAQL 528
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 769 YMRTQSGELVTLDTLTHIEEvaSSIRlshynkqksVTIKANLMEGYTLGDALDFLDEQAIEQLPGD-ISVSYSGESKDFK 847
Cdd:COG1033 529 LLLLSSPPGDDLSRFVDEDY--SAAR---------VTVRLKDLDSEEIKALVEEVRAFLAENFPPDgVEVTLTGSAVLFA 597
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 848 ENQSSI----LVVFALAMLVAYLVLAAQFESFINPLVVMFTVPMGIFGGFLGLVLMSQGLNVYSQIGMIMLIGMVTKNGI 923
Cdd:COG1033 598 AINESViesqIRSLLLALLLIFLLLLLAFRSLRLGLISLIPNLLPILLTFGLMGLLGIPLNIATAVVASIALGIGVDYTI 677
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 924 LIVEFANQLRDRGIEFEKAIIDASARRLRPIMMTAFTTLAGAIPLITSTGAGYesrVAVGTVIFFGMGFATLVTLFVIPA 1003
Cdd:COG1033 678 HFLSRYREERRKGGDLEEAIRRALRTTGKAILFTSLTLAAGFGVLLFSSFPPL---ADFGLLLALGLLVALLAALLLLPA 754
|
....*
gi 1516000590 1004 MYRLI 1008
Cdd:COG1033 755 LLLLL 759
|
|
| actII |
TIGR00833 |
Transport protein; The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family ... |
294-650 |
1.35e-10 |
|
Transport protein; The Resistance-Nodulation-Cell Division (RND) Superfamily- MmpL sub family (TC 2.A.6.5)Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 129913 [Multi-domain] Cd Length: 910 Bit Score: 65.76 E-value: 1.35e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 294 LEVADLVHKEVEaiQKFLPDGTR------LAVDYDSTVFIDRSiseVYSTLFITGGLVILVLYIFIGQARATLIPAVTVP 367
Cdd:TIGR00833 134 QEAINAVRRIVE--QTNAPDGLTvhvtgpLATIADILESGDKD---MNRITATTGIIVLIILLLVYRSPITMLVPLVSVG 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 368 VSLISS----FIAAYYFGFSINLITLMALI-LSIGLVVDDAIVVVENIFHHIERGESPLLAAYKGTREVGFAVIATTLVL 442
Cdd:TIGR00833 209 FSVVVAqgivSLLGIPGLIGVNAQTTVLLTaLVIGAGTDYAVFLTGRYHEERRKGESLEEAAAEALRGTGKAILGSALTV 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 443 VMVFLPISFMDGMVgllFTEFSVLLAMSVIFSSLVALTLTPVLGskilkanVKPNRFNLFVERVFGKLESGYRSVLRRAL 522
Cdd:TIGR00833 289 AVAFLALSLARLPS---FKTLGVSCAVGVLVALLNAVTLTPALL-------TLEGREGLMKPGRKSKIRFIWRRLGTAVV 358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 523 nwRWAAPIIIIACmggsyglmqqvpsqltpqedrgvIFAFVrGADATSYNRmsanmDIVEERLMPLLGQGFLKSFSIQSP 602
Cdd:TIGR00833 359 --RRPWPILVTTL-----------------------IISGV-SLLALPLIR-----TGYDDEKMIPTDLESVQGYEAADR 407
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1516000590 603 AFGGNAGDQTgfVIMILEDWDERDVTAQEALNEVRQSLAGIPDV-RVFP 650
Cdd:TIGR00833 408 HFPGNSMDPM--VVMIKSDHDVRNPALLADIDRFEREIKAVPGInMVQE 454
|
|
| ACR_tran |
pfam00873 |
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are ... |
621-1017 |
1.55e-09 |
|
AcrB/AcrD/AcrF family; Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer.
Pssm-ID: 395701 [Multi-domain] Cd Length: 1021 Bit Score: 62.31 E-value: 1.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 621 DWDERDVTAQEALNEVRQSLAgiPDVRVfPFMPGFKGGSSEPVQFVL----GGSDYTELQKWAELlkQAAEDSPMMEG-A 695
Cdd:pfam00873 98 DIDIARQDVQNRLQLATPLLP--EGVQR-PGISVIKTSLGPIMVLAVtspdGSYTQTDLRDYADT--NIKPQLSRVPGvG 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 696 DID-YSEKTPELLVTVDKQRAAELGVSVSDISDTLEIMLGGRSETTFVDRGEEYDVYLRGdenSFNNANDLSQIYMRTQS 774
Cdd:pfam00873 173 DVQlFGGSEYAMRIWLDPQKLARYGLTLTDVVSALKEQNVNIGAGQLEGQGLQALIRAQG---QLQSAEDFEKIIVKNQD 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 775 GELVTLDTLTHIEEVASSIRL-SHYNKQKSVTIKANLMEGytlGDALDFLD--EQAIEQL----PGDISVSYSGESKDF- 846
Cdd:pfam00873 250 GSPVRLRDVATVELGSELYRGfATFNGKPAVGLGVQKLPG---ANAIETADavRAKLAELkptfPQGVEIVVVYDTTPFi 326
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 847 ----KENQSSILVVFALAMLVAYLVLaaqfESFINPLVVMFTVPMGIFGGFLGLVLMSQGLNVYSQIGMIMLIGMVTKNG 922
Cdd:pfam00873 327 rasiEEVVKTLLEAIVLVILVMFLFL----QNWRATLIPAIAIPLSLLGTFAVMKAFGFSINTLTLGGLVLAIGLVVDDA 402
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 923 ILIVE-FANQLRDRGIEFEKAIIDASARRLRPIMMTAFTTLAGAIPLIT---STGAGYESrvaVGTVIFFGMGFATLVTL 998
Cdd:pfam00873 403 IVVVEnIERVLEENGLKPLEAAYKSMGEIGGALVAIALVLSAVFLPILFlggLTGRIFRQ---FAITIVLAILLSVLVAL 479
|
410
....*....|....*....
gi 1516000590 999 FVIPAMYRLISGSTRSPGH 1017
Cdd:pfam00873 480 TLTPALCATLLKPRREPKH 498
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
337-549 |
6.51e-09 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 59.85 E-value: 6.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 337 TLFITGGLVILVLYIFIGQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHIER 416
Cdd:TIGR00921 198 TMAISGILVVLVLLLDFKRWWRPLLPLVIILFGVAWVLGIMGWLGIPLYATTLLAVPMLIGVGIDYGIQTLNRYEEERDI 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 417 GESPLLAAYKGTREVGFAVIATTLVLVMVFLPIsFMDGMVGLlfTEFSVLLAMSVIFSSLVALTLTPVLGSKILKANVKP 496
Cdd:TIGR00921 278 GRAKGEAIVTAVRRTGRAVLIALLTTSAGFAAL-ALSEFPMV--SEFGLGLVAGLITAYLLTLLVLPALLQSIDIGREKV 354
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1516000590 497 NRFNLFVERVFGKLESGYRSVLRRALNWRWAAPII--IIACMGGsYGlMQQVPSQ 549
Cdd:TIGR00921 355 KKEIIAIGGKSSEIEEELSKVLSITVRHPVPALVAalIITGLGL-YG-AAGIKPE 407
|
|
| MMPL |
pfam03176 |
MMPL family; Members of this family are putative integral membrane proteins from bacteria. ... |
312-485 |
1.13e-08 |
|
MMPL family; Members of this family are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport.
Pssm-ID: 308676 [Multi-domain] Cd Length: 332 Bit Score: 58.07 E-value: 1.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 312 PDGTRLAVDYDSTVFIDRSISEVYSTLFITGG---LVILVLYIFIGQARATLIPAVTVPVSLISSF----IAAYYFGFSI 384
Cdd:pfam03176 119 PEGLKAYLTGPAATVADLRDAGDRDLGLIEAVtlvVIFIILLIVYRSVVAALLPLLTVGLSLGAAQglvaILAHILGIGL 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 385 NLITL-MALILSIGLVVDDAIVVVENIFHHIERGESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVgllFTEF 463
Cdd:pfam03176 199 STFALnLLVVLLIAVGTDYALFLVSRYREELRAGEDREEAVIRAVRGTGKVVTAAGLTVAIAMLALSFARLPV---FAQV 275
|
170 180
....*....|....*....|..
gi 1516000590 464 SVLLAMSVIFSSLVALTLTPVL 485
Cdd:pfam03176 276 GPTIAIGVLVDVLAALTLLPAL 297
|
|
| YdfJ |
COG2409 |
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function ... |
290-537 |
2.19e-08 |
|
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function prediction only];
Pssm-ID: 441964 [Multi-domain] Cd Length: 697 Bit Score: 58.24 E-value: 2.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 290 DANPLEVADLVHKEV-EAIQKFLPDGTR------LAVDYDSTVFIDRSISevySTLFITGGLVILVLYIFIGQARATLIP 362
Cdd:COG2409 123 DGDAGDEAAEAVDALrDAVAAAPAPGLTvyvtgpAALAADLNEAFEEDLG---RAELITLPVALVVLLLVFRSLVAALLP 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 363 AVTVPVSLISSF----IAAYYFGFSINLITLMALILsIGLVVDDAIVVVeNIFHH-IERGESPLLAAYKGTREVGFAVI- 436
Cdd:COG2409 200 LLTAGLAVGVALgllaLLAAFTDVSSFAPNLLTMLG-LGVGIDYALFLV-SRYREeLRAGEDREEAVARAVATAGRAVLf 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 437 -ATTLVLvmvflpisfmdGMVGLLFTEFSVL------LAMSVIFSSLVALTLTP----VLGSKILKANVKpnrfnlFVER 505
Cdd:COG2409 278 sGLTVAI-----------ALLGLLLAGLPFLrsmgpaAAIGVAVAVLAALTLLPallaLLGRRVFWPRRP------RRRR 340
|
250 260 270
....*....|....*....|....*....|..
gi 1516000590 506 VFGKLESGYRSVLRRALNWRWAAPIIIIACMG 537
Cdd:COG2409 341 AAAPESGFWRRLARAVVRRPVPVLVAAVAVLL 372
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
830-1008 |
1.09e-07 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 56.00 E-value: 1.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 830 QLPGDISVSYSGESkdfkENQSSILVVFALAMLVAYLVLAAQFESFINPLVVMFTVPMGIFGGFLGLVLMSQGLNVYSQI 909
Cdd:TIGR00921 176 DVTGSPAINYDIER----EFGKDMGTTMAISGILVVLVLLLDFKRWWRPLLPLVIILFGVAWVLGIMGWLGIPLYATTLL 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 910 GMIMLIGMVTKNGILIVEFANQLRDRGIEFEKAIIDASARRLRPIMMTAFTTLAGAIPLITStgaGYESRVAVGTVIFFG 989
Cdd:TIGR00921 252 AVPMLIGVGIDYGIQTLNRYEEERDIGRAKGEAIVTAVRRTGRAVLIALLTTSAGFAALALS---EFPMVSEFGLGLVAG 328
|
170
....*....|....*....
gi 1516000590 990 MGFATLVTLFVIPAMYRLI 1008
Cdd:TIGR00921 329 LITAYLLTLLVLPALLQSI 347
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
343-644 |
2.95e-07 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 54.47 E-value: 2.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 343 GLVILVLYIFIGQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHIERGESPLL 422
Cdd:PRK13024 275 GFALIFLFMLVYYGLPGLIANIALLLYIFLTLGALSSLGAVLTLPGIAGLVLGIGMAVDANVLIFERIKEELRKGKSLKK 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 423 AAYKGTREVGFAVI---ATTLVlvmvflpisfmdgMVGLLFT-------EFSVLLAMSVIFSSLVALTLTPVLGSKILKA 492
Cdd:PRK13024 355 AFKKGFKNAFSTILdsnITTLI-------------AAAILFFfgtgpvkGFATTLIIGILASLFTAVFLTRLLLELLVKR 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 493 NVKPNRFNLFVERVFGKLESGYRSV-----LRRALNWRWAAPIIIIACMGGSyglmqqvpsqltpqedrgVIFAFVRGAD 567
Cdd:PRK13024 422 GDKKPFLFGVKKKKIHNINEGVTIFdridfVKKRKWFLIFSIVLVIAGIIIF------------------FIFGLNLGID 483
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1516000590 568 ATSYNRMS--ANMDIVEERLMPLLGQGFLKSFSIQSpafggNAGDQTGFVIMILEDWDERDVTAQEALNEVRQSLAGIP 644
Cdd:PRK13024 484 FTGGTRYEirTDQPVDLEQVRADLKELGLGEVNIVT-----FGSDNNQVLVRTYGILSDDEEADTEIVAKLKNALKNDK 557
|
|
| COG4258 |
COG4258 |
Predicted exporter [General function prediction only]; |
295-1003 |
4.08e-06 |
|
Predicted exporter [General function prediction only];
Pssm-ID: 443400 [Multi-domain] Cd Length: 783 Bit Score: 51.01 E-value: 4.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 295 EVADLVHKEVEAIQKFLPDGTrlaVDYDSTVFI-----DRSISEVYSTLFITGGLVILVLYIFIGQARATLIPAVTVPVS 369
Cdd:COG4258 210 QLVAALRAAFAALNAAFPGAQ---LLLTGAGLFavaaaQQIKHDISTIGLISLLGILLLLLLVFRSLRPLLLGLLPVAVG 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 370 LISSfIAAYYFGF-SINLITL---MALIlsiGLVVDDAIvvveNIFHHIERGESplLAAYKGTREVGFAV---IATTLV- 441
Cdd:COG4258 287 ALAG-LAAVSLVFgSVHGITLgfgSSLI---GVAVDYSL----HYLTHRRAAGE--WDPRAALRRIWPTLllgLLTTVLg 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 442 -LVMVFLPisfMDGMVGL-LFTefsvllAMSVIFSSLVALTLTPVLGSKilKANVKPNRFNLFVERVFGklesgyrsvlR 519
Cdd:COG4258 357 yLALLFSP---FPGLRQLgVFA------AAGLLAAALTTLLWLPLLLPR--AAPRPPAPALALLARLLA----------R 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 520 RALNWRWAAPIIIIACMGGSYGL-----------MQQVPSQLTPQEDR---------GVIFAFVRGADAtsyNRMSANMD 579
Cdd:COG4258 416 WPRRLRWLLALLAVLALASLLGLnrlkwnddlraLNPVPAALLAQEARlrallgapdVSQYLVVYGPDA---EQALQRNE 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 580 IVEERLMPLLGQGFLKSFS-----IQSPAfggnagDQTGFvimiLEDWDERDVTAQEALNEVRQslAGIPDVRVFPFMpg 654
Cdd:COG4258 493 ALLPRLDALVAQGAIAGYQslsrlLPSAA------TQQAR----QALLPDLAALRPRLAEALAG--LGFRPDAFAPFL-- 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 655 fkggssepvqfvlggSDYTELQKWAELLKQAAEDSPMmegadidySEKTPELLVTVDKQRAAELgVSVSDISD--TLEIM 732
Cdd:COG4258 559 ---------------ADLEAARAAPPLTPEDLLASPL--------AAALRLLLLGRKDGQWAAL-VPLRGVDDaaALRAA 614
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 733 LGGRSETTFVDRGEEydvylrgdensfnnandlsqiymrtqsgelvtLDTLthieevassirLSHYnkqksvtikanlme 812
Cdd:COG4258 615 AAGLPGVRLVDRKAE--------------------------------SSSL-----------FGRY-------------- 637
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 813 gytLGDALDFLdeqaieqlpgdisvsysgeskdfkenqssilvvfALAMLVAYLVLAAQFESFINPLVVMFTVPMGIFGG 892
Cdd:COG4258 638 ---RNDALWLL----------------------------------LLALLLILLLLLLRLRSLRRALRVLLPPLLAVLLT 680
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 893 FLGLVLMSQGLNVYSQIGMIMLIGMvtknGIlivefanqlrDRGIEFEKAIIDA--SARRLRPIMMTAFTTLAGAIPLIT 970
Cdd:COG4258 681 LAILGLLGIPLNLFHLIALLLVLGI----GI----------DYALFFTEGLLDKgeLARTLLSILLAALTTLLGFGLLAF 746
|
730 740 750
....*....|....*....|....*....|....
gi 1516000590 971 S-TGAGYesrvAVGTVIFFGMGFATLVTLFVIPA 1003
Cdd:COG4258 747 SsTPALR----SFGLTVLLGILLALLLAPLLAPR 776
|
|
| YdfJ |
COG2409 |
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function ... |
803-1004 |
2.40e-05 |
|
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function prediction only];
Pssm-ID: 441964 [Multi-domain] Cd Length: 697 Bit Score: 48.22 E-value: 2.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 803 SVTIKANLMEgyTLGDALDFLDEQAIEQLPGDISVSYSGE---SKDFKENQSSILVVF-ALAMLVAYLVLAAQFESFINP 878
Cdd:COG2409 119 TVTLDGDAGD--EAAEAVDALRDAVAAAPAPGLTVYVTGPaalAADLNEAFEEDLGRAeLITLPVALVVLLLVFRSLVAA 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 879 LVVMFTVPMGIFGGFLGLVLMSQ--GLNVYSQ-IGMIMLIGMVTKNGILIV-EFANQLRdRGIEFEKAIIDASARRLRPI 954
Cdd:COG2409 197 LLPLLTAGLAVGVALGLLALLAAftDVSSFAPnLLTMLGLGVGIDYALFLVsRYREELR-AGEDREEAVARAVATAGRAV 275
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1516000590 955 MMTAFTTLAGAIPLITsTGAGYESRVAVGTVIffGMGFATLVTLFVIPAM 1004
Cdd:COG2409 276 LFSGLTVAIALLGLLL-AGLPFLRSMGPAAAI--GVAVAVLAALTLLPAL 322
|
|
| MMPL |
pfam03176 |
MMPL family; Members of this family are putative integral membrane proteins from bacteria. ... |
825-1003 |
9.88e-05 |
|
MMPL family; Members of this family are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport.
Pssm-ID: 308676 [Multi-domain] Cd Length: 332 Bit Score: 45.75 E-value: 9.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 825 EQAIEQL--PGDISVSYSGES---KDFKE-NQSSILVVFALAMLVAYLVLAAQFESFINPLVVMFTVPMGIFGGFlGLVL 898
Cdd:pfam03176 110 RDAVEQAppPEGLKAYLTGPAatvADLRDaGDRDLGLIEAVTLVVIFIILLIVYRSVVAALLPLLTVGLSLGAAQ-GLVA 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 899 MSQ---GLNVYSQ---IGMIMLIGMVTKNGILIVEFANQLRDRGIEFEKAIIDASARRLRPImmtaftTLAGAIPLITST 972
Cdd:pfam03176 189 ILAhilGIGLSTFalnLLVVLLIAVGTDYALFLVSRYREELRAGEDREEAVIRAVRGTGKVV------TAAGLTVAIAML 262
|
170 180 190
....*....|....*....|....*....|....
gi 1516000590 973 G---AGYESRVAVGTVIFFGMGFATLVTLFVIPA 1003
Cdd:pfam03176 263 AlsfARLPVFAQVGPTIAIGVLVDVLAALTLLPA 296
|
|
| HpnN |
TIGR03480 |
hopanoid biosynthesis associated RND transporter like protein HpnN; The genomes containing ... |
833-1016 |
1.51e-03 |
|
hopanoid biosynthesis associated RND transporter like protein HpnN; The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Pssm-ID: 274598 [Multi-domain] Cd Length: 862 Bit Score: 42.68 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 833 GDISVSYSGESK----DFKENQSSILVVFALAMLVAYLVLAAQFESFINPLVVMFTVPMG-IFGGFLGLVLMSQgLNVYS 907
Cdd:TIGR03480 247 HGVTVRLTGEVAlsdeELATVSEGATVAGLLSFVLVLVLLWLALRSPRLVFAVLVTLIVGlILTAAFATLAVGH-LNLIS 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 908 QIGMIMLIGMVTKNGILIVEFANQLRDRGIEFEKAIIDASARRLRPIMMTAFTTLAGAIPLITSTGAGyesrVA-VGTVI 986
Cdd:TIGR03480 326 VAFAVLFIGLGVDFAIQFSLRYREERFRGGNHREALSVAARRMGAALLLAALATAAGFFAFLPTDYKG----VSeLGIIA 401
|
170 180 190
....*....|....*....|....*....|..
gi 1516000590 987 FFGMGFATLVTLFVIPAMYRLI--SGSTRSPG 1016
Cdd:TIGR03480 402 GTGMFIALFVTLTVLPALLRLLrpPRRRKPPG 433
|
|
| HpnN |
TIGR03480 |
hopanoid biosynthesis associated RND transporter like protein HpnN; The genomes containing ... |
340-473 |
6.78e-03 |
|
hopanoid biosynthesis associated RND transporter like protein HpnN; The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Pssm-ID: 274598 [Multi-domain] Cd Length: 862 Bit Score: 40.37 E-value: 6.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 340 ITGGLVILVLYIFIGQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHIERGES 419
Cdd:TIGR03480 277 LSFVLVLVLLWLALRSPRLVFAVLVTLIVGLILTAAFATLAVGHLNLISVAFAVLFIGLGVDFAIQFSLRYREERFRGGN 356
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1516000590 420 PLLAAYKGTREVG---FAVIATTLVLVMVFLPISFMD----------GMVGLLFTEFSVLLAMSVIF 473
Cdd:TIGR03480 357 HREALSVAARRMGaalLLAALATAAGFFAFLPTDYKGvselgiiagtGMFIALFVTLTVLPALLRLL 423
|
|
| secD |
TIGR01129 |
protein-export membrane protein SecD; Members of this family are highly variable in length ... |
343-485 |
7.95e-03 |
|
protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273456 [Multi-domain] Cd Length: 397 Bit Score: 39.96 E-value: 7.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1516000590 343 GLVILVLYIFIGQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHIERGESPLL 422
Cdd:TIGR01129 257 GLVLVLVFMILYYRLFGLIAAIALVINIVLILAILSAFGATLTLPGIAGLILTIGMAVDANVLIYERIKEELRLGKSVRQ 336
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1516000590 423 A---AYKGTREVGFAVIATTLV--LVMVFLPISFMDGmvgllfteFSVLLAMSVIFSSLVALTLTPVL 485
Cdd:TIGR01129 337 AieaGFERAFSTIFDANITTLIaaLILYVFGTGPVKG--------FAVTLAIGIIASLFTALVFTRLL 396
|
|
| |
