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Conserved domains on  [gi|1515130351|gb|ROL05251|]
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hypothetical protein BFD64_24310 [Escherichia coli]

Protein Classification

zinc ribbon domain-containing protein( domain architecture ID 141595)

putative zinc ribbon domain-containing protein

Gene Ontology:  GO:0008270
PubMed:  32851833

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zinc_ribbon_11 super family cl20095
Probable zinc-ribbon; This family of proteins with unknown function appears to be restricted ...
 4-122 5.28e-16

Probable zinc-ribbon; This family of proteins with unknown function appears to be restricted to Enterobacteriaceae. It is a probably zinc-ribbon.


The actual alignment was detected with superfamily member pfam11682:

Pssm-ID: 288524  Cd Length: 127  Bit Score: 68.90  E-value: 5.28e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1515130351   4 KSFJALD*NGRLTGART*QAAPYAHYTCHL-CGSALRYHPQYDTELPWFEHtdDRLTEHGQ---QCPYVRPERREIQLIK 79
Cdd:pfam11682   4 KCYLANDAKGHFVNAKEAAKHNQGDVLCCTsCGCPLTLHNGNDCQEAWFEH--DQFSIAEKilkACAWLDPAEKEAERIK 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1515130351  80 RLQQ-FVPD-ALPVVRKasWHCRQCHHDYYGE*YCTHCQTGGFSI 122
Cdd:pfam11682  82 HLQEkIRADyALPEPNK--WFCVLCDEDYEGEKCCPACGDGIYSR 124
 
Name Accession Description Interval E-value
zinc_ribbon_11 pfam11682
Probable zinc-ribbon; This family of proteins with unknown function appears to be restricted ...
 4-122 5.28e-16

Probable zinc-ribbon; This family of proteins with unknown function appears to be restricted to Enterobacteriaceae. It is a probably zinc-ribbon.


Pssm-ID: 288524  Cd Length: 127  Bit Score: 68.90  E-value: 5.28e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1515130351   4 KSFJALD*NGRLTGART*QAAPYAHYTCHL-CGSALRYHPQYDTELPWFEHtdDRLTEHGQ---QCPYVRPERREIQLIK 79
Cdd:pfam11682   4 KCYLANDAKGHFVNAKEAAKHNQGDVLCCTsCGCPLTLHNGNDCQEAWFEH--DQFSIAEKilkACAWLDPAEKEAERIK 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1515130351  80 RLQQ-FVPD-ALPVVRKasWHCRQCHHDYYGE*YCTHCQTGGFSI 122
Cdd:pfam11682  82 HLQEkIRADyALPEPNK--WFCVLCDEDYEGEKCCPACGDGIYSR 124
 
Name Accession Description Interval E-value
zinc_ribbon_11 pfam11682
Probable zinc-ribbon; This family of proteins with unknown function appears to be restricted ...
 4-122 5.28e-16

Probable zinc-ribbon; This family of proteins with unknown function appears to be restricted to Enterobacteriaceae. It is a probably zinc-ribbon.


Pssm-ID: 288524  Cd Length: 127  Bit Score: 68.90  E-value: 5.28e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1515130351   4 KSFJALD*NGRLTGART*QAAPYAHYTCHL-CGSALRYHPQYDTELPWFEHtdDRLTEHGQ---QCPYVRPERREIQLIK 79
Cdd:pfam11682   4 KCYLANDAKGHFVNAKEAAKHNQGDVLCCTsCGCPLTLHNGNDCQEAWFEH--DQFSIAEKilkACAWLDPAEKEAERIK 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1515130351  80 RLQQ-FVPD-ALPVVRKasWHCRQCHHDYYGE*YCTHCQTGGFSI 122
Cdd:pfam11682  82 HLQEkIRADyALPEPNK--WFCVLCDEDYEGEKCCPACGDGIYSR 124
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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