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Conserved domains on  [gi|1499888711|gb|RMV04212|]
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Endopeptidase [Pseudomonas syringae pv. tomato]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phage_lysis super family cl22701
Bacteriophage Rz lysis protein; This protein is involved in host lysis. This family is not ...
 34-145 5.05e-16

Bacteriophage Rz lysis protein; This protein is involved in host lysis. This family is not considered to be a peptidase according to the MEROPs database. This family Rz and the Rz1 protein (pfam06085) represent a unique example of two genes located in different reading frames in the same nucleotide sequence, which encode different proteins that are both required in the same physiological pathway.


The actual alignment was detected with superfamily member pfam03245:

Pssm-ID: 451417  Cd Length: 126  Bit Score: 69.44  E-value: 5.05e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499888711  34 SAIATLEAAAESRRNTQRLLLDLDTKHTQELTNAQNTNAQLRAAVATGKRRLSVKAACPA-VRGTASPTGMDDDqARADI 112
Cdd:pfam03245  14 SELRAANAEITDQNARIRAVAALDAKHTKELANAKSENDRLRADVAAGTRRLRINATCPAgVPKATSAAGVGDA-ASARL 92

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1499888711 113 DPASAERIVTIANDGDDAIRALNGLQDYITTAC 145
Cdd:pfam03245  93 NPAAERDYFDLRERIDENEQQLKGLQDYIRAQC 125
 
Name Accession Description Interval E-value
Phage_lysis pfam03245
Bacteriophage Rz lysis protein; This protein is involved in host lysis. This family is not ...
 34-145 5.05e-16

Bacteriophage Rz lysis protein; This protein is involved in host lysis. This family is not considered to be a peptidase according to the MEROPs database. This family Rz and the Rz1 protein (pfam06085) represent a unique example of two genes located in different reading frames in the same nucleotide sequence, which encode different proteins that are both required in the same physiological pathway.


Pssm-ID: 427215  Cd Length: 126  Bit Score: 69.44  E-value: 5.05e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499888711  34 SAIATLEAAAESRRNTQRLLLDLDTKHTQELTNAQNTNAQLRAAVATGKRRLSVKAACPA-VRGTASPTGMDDDqARADI 112
Cdd:pfam03245  14 SELRAANAEITDQNARIRAVAALDAKHTKELANAKSENDRLRADVAAGTRRLRINATCPAgVPKATSAAGVGDA-ASARL 92

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1499888711 113 DPASAERIVTIANDGDDAIRALNGLQDYITTAC 145
Cdd:pfam03245  93 NPAAERDYFDLRERIDENEQQLKGLQDYIRAQC 125
 
Name Accession Description Interval E-value
Phage_lysis pfam03245
Bacteriophage Rz lysis protein; This protein is involved in host lysis. This family is not ...
 34-145 5.05e-16

Bacteriophage Rz lysis protein; This protein is involved in host lysis. This family is not considered to be a peptidase according to the MEROPs database. This family Rz and the Rz1 protein (pfam06085) represent a unique example of two genes located in different reading frames in the same nucleotide sequence, which encode different proteins that are both required in the same physiological pathway.


Pssm-ID: 427215  Cd Length: 126  Bit Score: 69.44  E-value: 5.05e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1499888711  34 SAIATLEAAAESRRNTQRLLLDLDTKHTQELTNAQNTNAQLRAAVATGKRRLSVKAACPA-VRGTASPTGMDDDqARADI 112
Cdd:pfam03245  14 SELRAANAEITDQNARIRAVAALDAKHTKELANAKSENDRLRADVAAGTRRLRINATCPAgVPKATSAAGVGDA-ASARL 92

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1499888711 113 DPASAERIVTIANDGDDAIRALNGLQDYITTAC 145
Cdd:pfam03245  93 NPAAERDYFDLRERIDENEQQLKGLQDYIRAQC 125
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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