|
Name |
Accession |
Description |
Interval |
E-value |
| rfc |
PRK00440 |
replication factor C small subunit; Reviewed |
6-319 |
7.23e-145 |
|
replication factor C small subunit; Reviewed
Pssm-ID: 234763 [Multi-domain] Cd Length: 319 Bit Score: 410.80 E-value: 7.23e-145
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 6 ELLWIEKYRPKKLDDIVDQEEVIQGLKNLLKGdiKEMPHLLFAGPPGTGKTTTALALAREIYGGQWRDYVLELNASDERG 85
Cdd:PRK00440 4 EEIWVEKYRPRTLDEIVGQEEIVERLKSYVKE--KNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 86 INVIRERVKIFAQYfTPSEKAPFKIVILDEADMMTSEAQTALRRIMEINARVTRFILICNYITRIISPIQSRTAIFRFKR 165
Cdd:PRK00440 82 IDVIRNKIKEFART-APVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 166 LPKEGAIQYLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLLQSVSTvTGGKPTVKDVESIVGKATPEAIVKMID-AL 244
Cdd:PRK00440 161 LKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAA-TGKEVTEEAVYKITGTARPEEIREMIElAL 239
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1491180861 245 RmGDFNSARNLLFDFISVSNLDGQEVIKLIFNELMMRNL---LQPEVAEVLAEYEYRILTSAYYEIQLTALLAKLSRL 319
Cdd:PRK00440 240 N-GDFTEAREKLRDLMIDYGLSGEDIIKQIHREVWSLDIpeeLKVELIDAIGEADFRITEGANERIQLEALLAKLALL 316
|
|
| PLN03025 |
PLN03025 |
replication factor C subunit; Provisional |
9-319 |
1.98e-74 |
|
replication factor C subunit; Provisional
Pssm-ID: 178596 [Multi-domain] Cd Length: 319 Bit Score: 231.93 E-value: 1.98e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 9 WIEKYRPKKLDDIVDQEEVIQGLKNLLKGDikEMPHLLFAGPPGTGKTTTALALAREIYGGQWRDYVLELNASDERGINV 88
Cdd:PLN03025 3 WVEKYRPTKLDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 89 IRERVKIFAQYFTPSEKAPFKIVILDEADMMTSEAQTALRRIMEINARVTRFILICNYITRIISPIQSRTAIFRFKRLPK 168
Cdd:PLN03025 81 VRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 169 EGAIQYLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLLQsvSTVTG-GKPTVKDVESIVGKATPEAIVKMIDALRMG 247
Cdd:PLN03025 161 QEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQ--ATHSGfGFVNQENVFKVCDQPHPLHVKNIVRNCLKG 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 248 DFNSA----RNLL------FDFIS-----VSNLDGQEVIKLifnELM-------MRnllqpeVAEVLAEYeyriltsayy 305
Cdd:PLN03025 239 KFDDAcdglKQLYdlgyspTDIITtlfrvVKNYDMPEFLKL---EYLreigfahMR------ICDGVGSL---------- 299
|
330
....*....|....
gi 1491180861 306 eIQLTALLAKLSRL 319
Cdd:PLN03025 300 -LQLSGLLAKLCLV 312
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
6-317 |
9.62e-67 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 224.33 E-value: 9.62e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 6 ELLWIEKYRPKKLD-DIVDQEEVIQGLKNLLKGDIKEMPHllfagppgtgKTTTALALAREIYGGQWRDYVLELNASDER 84
Cdd:PRK04132 539 ELYWDEITEVEELKgDFIIYDLHVPGYHNFIGGNLPTVLH----------NTTAALALARELFGENWRHNFLELNASDER 608
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 85 GINVIRERVKIFAQYfTPSEKAPFKIVILDEADMMTSEAQTALRRIMEINARVTRFILICNYITRIISPIQSRTAIFRFK 164
Cdd:PRK04132 609 GINVIREKVKEFART-KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFR 687
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 165 RLPKEGAIQYLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLLQSVSTVTgGKPTVKDVESIVGKATPEAIVKMIDAL 244
Cdd:PRK04132 688 PLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALD-DKITDENVFLVASRARPEDIREMMLLA 766
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1491180861 245 RMGDFNSARNLLFDFISVSNLDGQEVIKLIFNELMMRNLLQP---EVAEVLAEYEYRILTSAYYEIQLTALLAKLS 317
Cdd:PRK04132 767 LKGNFLKAREKLREILLKQGLSGEDVLVQMHREVFNLPIDEPkkvELADKIGEYNFRLVEGANEMIQLEALLAQFT 842
|
|
| PRK12402 |
PRK12402 |
replication factor C small subunit 2; Reviewed |
8-317 |
8.44e-65 |
|
replication factor C small subunit 2; Reviewed
Pssm-ID: 237090 [Multi-domain] Cd Length: 337 Bit Score: 207.53 E-value: 8.44e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 8 LWIEKYRPKKLDDIVDQEEVIQGLKNLLkgDIKEMPHLLFAGPPGTGKTTTALALAREIYGGQWRDYVLELNASD--ERG 85
Cdd:PRK12402 4 LWTEKYRPALLEDILGQDEVVERLSRAV--DSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADffDQG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 86 INVIRERvKIFAQYFTPSEK-----------------------APFKIVILDEADMMTSEAQTALRRIMEINARVTRFIL 142
Cdd:PRK12402 82 KKYLVED-PRFAHFLGTDKRirsskidnfkhvlkeyasyrplsADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFII 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 143 ICNYITRIISPIQSRTAIFRFKRLPKEGAIQYLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLLQSVSTVtGGKPTV 222
Cdd:PRK12402 161 ATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAALA-AGEITM 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 223 KDV-ESIVGKATPEAIVKMIDALRMGDFNSARNLLFDFISVSNLDGQEVIklifnelmmRNLLQ-----------PEVAE 290
Cdd:PRK12402 240 EAAyEALGDVGTDEVIESLLDAAEAGDFTDARKTLDDLLIDEGLSGGEVL---------EELLRvarsryrgdnlARLHR 310
|
330 340
....*....|....*....|....*..
gi 1491180861 291 VLAEYEYRILTSAYYEIQLTALLAKLS 317
Cdd:PRK12402 311 LAADADARLTDGANDRIQLEALLAELG 337
|
|
| HolB |
COG0470 |
DNA polymerase III, delta prime subunit [Replication, recombination and repair]; |
24-319 |
6.02e-55 |
|
DNA polymerase III, delta prime subunit [Replication, recombination and repair];
Pssm-ID: 440238 [Multi-domain] Cd Length: 289 Bit Score: 180.56 E-value: 6.02e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 24 QEEVIQGLKNLLKGDiKEMPHLLFAGPPGTGKTTTALALAREIYGGQWRDY------------------VLELNA---SD 82
Cdd:COG0470 1 QEEAWEQLLAAAESG-RLPHALLLHGPPGIGKTTLALALARDLLCENPEGGkacgqchsrlmaagnhpdLLELNPeekSD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 83 ERGINVIRErVKIFAQYfTPSEkAPFKIVILDEADMMTSEAQTALRRIMEINARVTRFILICNYITRIISPIQSRTAIFR 162
Cdd:COG0470 80 QIGIDQIRE-LGEFLSL-TPLE-GGRKVVIIDEADAMNEAAANALLKTLEEPPKNTPFILIANDPSRLLPTIRSRCQVIR 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 163 FKRLPKEGAIQYLKmicdSEGVEcsPDVLDKIYEASLGDLRKAINLLQSVStvtGGKPTVKDVESIVGKATPEAIVKMID 242
Cdd:COG0470 157 FRPPSEEEALAWLR----EEGVD--EDALEAILRLAGGDPRAAINLLQALA---GRKELLEDLAALLSRDRALELLDALL 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 243 AlrmgdfNSARNLLfdfisvsnldgqEVIKLIFNELMMRNLLQPEVA---EVLAEYEYRILTSAYYEIQLTALLAKLSRL 319
Cdd:COG0470 228 K------AEALELL------------DWLLKWLLDNLPLEYAGEDLArayEALSEADRRLGRYANDRLLLEALLAKLGRL 289
|
|
| 44 |
PHA02544 |
clamp loader, small subunit; Provisional |
6-317 |
1.64e-50 |
|
clamp loader, small subunit; Provisional
Pssm-ID: 222866 [Multi-domain] Cd Length: 316 Bit Score: 170.17 E-value: 1.64e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 6 ELLWIEKYRPKKLDDIVdqeeVIQGLKNLLKGDIK--EMPH-LLFAGPPGTGKTTTALALAREIyggqwrDY-VLELNAS 81
Cdd:PHA02544 8 EFMWEQKYRPSTIDECI----LPAADKETFKSIVKkgRIPNmLLHSPSPGTGKTTVAKALCNEV------GAeVLFVNGS 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 82 DERgINVIRERVKIFAQyfTPSEKAPFKIVILDEAD-MMTSEAQTALRRIMEINARVTRFILICNYITRIISPIQSRTAI 160
Cdd:PHA02544 78 DCR-IDFVRNRLTRFAS--TVSLTGGGKVIIIDEFDrLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRV 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 161 FRFKRLPKEGAIQYLKM-------ICDSEGVECSPDVLDKIYEASLGDLRKAINLLQSVSTvTGgkptvKDVESIVGKAT 233
Cdd:PHA02544 155 IDFGVPTKEEQIEMMKQmivrckgILEAEGVEVDMKVLAALVKKNFPDFRRTINELQRYAS-TG-----KIDAGILSEVT 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 234 PEAIVKMIDALRMGDFNSARNLLFDFisvsNLDGQEVIKLIFNELmmRNLLQPE----VAEVLAEYEYRILTSAYYEIQL 309
Cdd:PHA02544 229 NSDIDDVVEALKAKDFKAVRALAPNY----ANDYASFVGKLYDEL--YPQVTPPsiirLIEIIGENNQYHGFAADQEIHL 302
|
....*...
gi 1491180861 310 TALLAKLS 317
Cdd:PHA02544 303 LYLLTQLM 310
|
|
| PRK04195 |
PRK04195 |
replication factor C large subunit; Provisional |
7-258 |
3.71e-50 |
|
replication factor C large subunit; Provisional
Pssm-ID: 235250 [Multi-domain] Cd Length: 482 Bit Score: 173.18 E-value: 3.71e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 7 LLWIEKYRPKKLDDIVDQEEVIQGLKNLLKGDIKEMPH--LLFAGPPGTGKTTTALALAREiYGGQwrdyVLELNASDER 84
Cdd:PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKkaLLLYGPPGVGKTSLAHALAND-YGWE----VIELNASDQR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 85 GINVIRERVKIFAQY--FTPSEKapfKIVILDEADMMTSEAQT-ALRRIMEI--NARVTrFILICN--YITRIiSPIQSR 157
Cdd:PRK04195 77 TADVIERVAGEAATSgsLFGARR---KLILLDEVDGIHGNEDRgGARAILELikKAKQP-IILTANdpYDPSL-RELRNA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 158 TAIFRFKRLPKEGAIQYLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLLQSVSTvTGGKPTVKDVESIVGKATPEAI 237
Cdd:PRK04195 152 CLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAE-GYGKLTLEDVKTLGRRDREESI 230
|
250 260
....*....|....*....|..
gi 1491180861 238 VKMIDALRMG-DFNSARNLLFD 258
Cdd:PRK04195 231 FDALDAVFKArNADQALEASYD 252
|
|
| PRK14953 |
PRK14953 |
DNA polymerase III subunits gamma and tau; Provisional |
12-297 |
1.36e-39 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237867 [Multi-domain] Cd Length: 486 Bit Score: 145.35 E-value: 1.36e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 12 KYRPKKLDDIVDQEEVIQGLKNLLKGDikEMPH-LLFAGPPGTGKTTTALALAR--------------------EIYGGQ 70
Cdd:PRK14953 9 KYRPKFFKEVIGQEIVVRILKNAVKLQ--RVSHaYIFAGPRGTGKTTIARILAKvlnclnpqegepcgkcencvEIDKGS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 71 WRDYVlELNASDERGINVIRErVKIFAQYfTPSeKAPFKIVILDEADMMTSEAQTALRRIMEINARVTRFILICNYITRI 150
Cdd:PRK14953 87 FPDLI-EIDAASNRGIDDIRA-LRDAVSY-TPI-KGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKI 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 151 ISPIQSRTAIFRFKRLPKEGAIQYLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLLQSVSTVTGGKPTVKDVESIVG 230
Cdd:PRK14953 163 PPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGEGKVTIKVVEEFLG 242
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 231 KATPEAIVKMIDALRMGDFNSARNLLFDFISVS---NLDGQEVIKLIFNELMMRNLLQPEvaEVLAEYEY 297
Cdd:PRK14953 243 IVSQESVRKFLNLLLESDVDEAIKFLRTLEEKGynlNKFWKQLEEEIRNILLNKSLKNPE--EVFQVEDF 310
|
|
| DnaX |
COG2812 |
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair]; |
15-299 |
4.74e-38 |
|
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];
Pssm-ID: 442061 [Multi-domain] Cd Length: 340 Bit Score: 138.02 E-value: 4.74e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 15 PKKLDDIVDQEEVIQGLKNLLKGDikEMPH-LLFAGPPGTGKTTTALALA--------------------REIYGGQWRD 73
Cdd:COG2812 6 PQTFDDVVGQEHVVRTLKNALASG--RLAHaYLFTGPRGVGKTTLARILAkalncengptgepcgecescRAIAAGSHPD 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 74 yVLEL--NASdERGINVIRERVKIFAqyFTPSEkAPFKIVILDEADMMTSEAQTALRRIME-INARVTrFILICNYITRI 150
Cdd:COG2812 84 -VIEIdaEAS-NIGVDDIRELIEKVS--YAPVE-GRYKVYIIDEAHMLTTEAFNALLKTLEePPPHVV-FILATTEPQKL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 151 ISPIQSRTAIFRFKRLPKEGAIQYLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLLQsvstvtggkptvkDVESIVG 230
Cdd:COG2812 158 LPTILSRCQRFDFRRLPPEEIAEHLAKIAEREGIEIEPEALALIARAADGSMRDALSLLD-------------QAIAFGL 224
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1491180861 231 KATPEAIVKMIDALRMGDFNSARNLLfDFISVSNLDGQEVIKLI---FNELMMRNLLQPEVAEVLAEYEYRI 299
Cdd:COG2812 225 LDRRELLLDLLEALLAGDVAALLALA-EELAKRGRDLKRFLDDLlslLRDLLLLKLGPDAELLVNEDERERL 295
|
|
| PRK14962 |
PRK14962 |
DNA polymerase III subunits gamma and tau; Provisional |
12-258 |
2.93e-35 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237869 [Multi-domain] Cd Length: 472 Bit Score: 133.35 E-value: 2.93e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 12 KYRPKKLDDIVDQEEVIQGLKNLLKGdiKEMPH-LLFAGPPGTGKTTTALALA--------------------REIYGGQ 70
Cdd:PRK14962 7 KYRPKTFSEVVGQDHVKKLIINALKK--NSISHaYIFAGPRGTGKTTVARILAkslncenrkgvepcnecracRSIDEGT 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 71 WRDyVLELNASDERGINVIRervKIF-AQYFTPSEkAPFKIVILDEADMMTSEAQTALRRIMEINARVTRFILICNYITR 149
Cdd:PRK14962 85 FMD-VIELDAASNRGIDEIR---KIRdAVGYRPME-GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEK 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 150 IISPIQSRTAIFRFKRLPKEGAIQYLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLLQSVSTVTGGKPTVKDVESIV 229
Cdd:PRK14962 160 VPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEAL 239
|
250 260
....*....|....*....|....*....
gi 1491180861 230 GKATPEAIVKMIDALRMGDFNSARNLLFD 258
Cdd:PRK14962 240 GLIPIEVVRDYINAIFNGDVKRVFTVLDD 268
|
|
| PRK05563 |
PRK05563 |
DNA polymerase III subunits gamma and tau; Validated |
12-294 |
2.66e-32 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235505 [Multi-domain] Cd Length: 559 Bit Score: 126.14 E-value: 2.66e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 12 KYRPKKLDDIVDQEEVIQGLKN-LLKGDIKempH-LLFAGPPGTGKTTTA--LALA------------------REIYGG 69
Cdd:PRK05563 9 KWRPQTFEDVVGQEHITKTLKNaIKQGKIS---HaYLFSGPRGTGKTSAAkiFAKAvnclnppdgepcneceicKAITNG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 70 QWRDyVLELNASDERGIN---VIRERVKifaqyFTPSEkAPFKIVILDEADMMTSEAQTALRRIME------InarvtrF 140
Cdd:PRK05563 86 SLMD-VIEIDAASNNGVDeirDIRDKVK-----YAPSE-AKYKVYIIDEVHMLSTGAFNALLKTLEeppahvI------F 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 141 ILICNYITRIISPIQSRTAIFRFKRLPKEGAIQYLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLL-QSVSTvTGGK 219
Cdd:PRK05563 153 ILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILdQAISF-GDGK 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 220 PTVKDVESIVGKATPEAIVKMIDALRMGDFNSARNLLFDFISvsnlDGQEVIKLIfNEL--MMRNLL------QPEVAEV 291
Cdd:PRK05563 232 VTYEDALEVTGSVSQEALDDLVDAIVEGDVAKALKILEELLD----EGKDPNRFI-EDLiyYLRDLLlvktspELEILDE 306
|
...
gi 1491180861 292 LAE 294
Cdd:PRK05563 307 STE 309
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
12-252 |
1.06e-30 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 121.84 E-value: 1.06e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 12 KYRPKKLDDIVDQEEVIQGLKNLLKGDikEMPH-LLFAGPPGTGKTTTALALA---------------------REIYGG 69
Cdd:PRK14950 9 KWRSQTFAELVGQEHVVQTLRNAIAEG--RVAHaYLFTGPRGVGKTSTARILAkavncttndpkgrpcgtcemcRAIAEG 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 70 QWRDyVLELNASDERGINVIR---ERVKifaqyFTPSEkAPFKIVILDEADMMTSEAQTALRRIMEINARVTRFILICNY 146
Cdd:PRK14950 87 SAVD-VIEMDAASHTSVDDAReiiERVQ-----FRPAL-ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 147 ITRIISPIQSRTAIFRFKRLPKEGAIQYLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLLQSVSTVTGGKPTVKDVE 226
Cdd:PRK14950 160 VHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGGEISLSQVQ 239
|
250 260
....*....|....*....|....*.
gi 1491180861 227 SIVGKATPEAIVKMIDALRMGDFNSA 252
Cdd:PRK14950 240 SLLGISGDEEVKALAEALLAKDLKAA 265
|
|
| PRK07133 |
PRK07133 |
DNA polymerase III subunits gamma and tau; Validated |
7-261 |
4.25e-30 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235943 [Multi-domain] Cd Length: 725 Bit Score: 120.31 E-value: 4.25e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 7 LLWIEKYRPKKLDDIVDQEEVIQGLKNLLKGDikEMPH-LLFAGPPGTGKTTTALALAREIYGGQWRDY----------- 74
Cdd:PRK07133 6 KALYRKYRPKTFDDIVGQDHIVQTLKNIIKSN--KISHaYLFSGPRGTGKTSVAKIFANALNCSHKTDLlepcqecienv 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 75 -----VLELNASDERGINVIR---ERVKIFAQyftpseKAPFKIVILDEADMMTSEAQTALRRIMEINARVTRFILICNY 146
Cdd:PRK07133 84 nnsldIIEMDAASNNGVDEIReliENVKNLPT------QSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTE 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 147 ITRIISPIQSRTAIFRFKRLPKEGAIQYLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLLQSVSTVTGGKPTVKDVE 226
Cdd:PRK07133 158 VHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKITLKNVE 237
|
250 260 270
....*....|....*....|....*....|....*
gi 1491180861 227 SIVGKATPEAIVKMIDALRMGDFNSARNLLFDFIS 261
Cdd:PRK07133 238 ELFGLVSNENLINLLNLLYSKDIKEVLNILNQIKE 272
|
|
| PRK06305 |
PRK06305 |
DNA polymerase III subunits gamma and tau; Validated |
12-261 |
2.44e-28 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180523 [Multi-domain] Cd Length: 451 Bit Score: 113.71 E-value: 2.44e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 12 KYRPKKLDDIVDQEEVIQGLKNLLKgdIKEMPH-LLFAGPPGTGKTTTALALA---------------------REIYGG 69
Cdd:PRK06305 10 KYRPQTFSEILGQDAVVAVLKNALR--FNRAAHaYLFSGIRGTGKTTLARIFAkalncqnptedqepcnqcascKEISSG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 70 QWRDyVLELNASDERGINVIR---ERVkifaqYFTPSeKAPFKIVILDEADMMTSEAQTALRRIMEINARVTRFILICNY 146
Cdd:PRK06305 88 TSLD-VLEIDGASHRGIEDIRqinETV-----LFTPS-KSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 147 ITRIISPIQSRTAIFRFKRLPKEGAIQYLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLLQSVSTVTGGKPTVKDVE 226
Cdd:PRK06305 161 IHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPKSLDPDSVA 240
|
250 260 270
....*....|....*....|....*....|....*
gi 1491180861 227 SIVGKATPEAIVKMIDALRMGDFNSARNLLFDFIS 261
Cdd:PRK06305 241 KALGLLSQDSLYTLDEAITTQNYAQALEPVTDAMN 275
|
|
| PRK14970 |
PRK14970 |
DNA polymerase III subunits gamma and tau; Provisional |
12-308 |
5.16e-27 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184934 [Multi-domain] Cd Length: 367 Bit Score: 108.81 E-value: 5.16e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 12 KYRPKKLDDIVDQEEVIQGLKNLLKGDiKEMPHLLFAGPPGTGKTTTALALAREI----YGGQWRDY---VLELNASDER 84
Cdd:PRK14970 10 KYRPQTFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKInqpgYDDPNEDFsfnIFELDAASNN 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 85 GINVIRERVKifaQYFTPSEKAPFKIVILDEADMMTSEAQTALRRIMEINARVTRFILICNYITRIISPIQSRTAIFRFK 164
Cdd:PRK14970 89 SVDDIRNLID---QVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFK 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 165 RLPKEGAIQYLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLLQSVSTVTGGKPTVKDVESIVGKATPEAIVKMIDal 244
Cdd:PRK14970 166 RITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVTENLNILDYDTYINVTD-- 243
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1491180861 245 rMGDFNSARNLL--FDFISVSNLDGQEVIKLIFNELmmRNLLQPEVAEVLAEYEYRILTSAYYEIQ 308
Cdd:PRK14970 244 -LILENKIPELLlaFNEILRKGFDGHHFIAGLASHF--RDLMVSKTPATIALLEVGEQAKKRYEVQ 306
|
|
| PRK14963 |
PRK14963 |
DNA polymerase III subunits gamma and tau; Provisional |
11-252 |
1.45e-26 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184927 [Multi-domain] Cd Length: 504 Bit Score: 109.16 E-value: 1.45e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 11 EKYRPKKLDDIVDQEEVIQGLKNLL-KGDIKEMphLLFAGPPGTGKTTTALALA-------------------REIYGGQ 70
Cdd:PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALrQGRLGHA--YLFSGPRGVGKTTTARLIAmavncsgedpkpcgecescLAVRRGA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 71 WRDyVLELNASDERGINVIRE-RVKIFaqyfTPSEKAPFKIVILDEADMMTSEAQTALRRIMEINARVTRFILICNYITR 149
Cdd:PRK14963 84 HPD-VLEIDAASNNSVEDVRDlREKVL----LAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEK 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 150 IISPIQSRTAIFRFKRLPKEGAIQYLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLLQSVSTvTGGKPTVKDVESIV 229
Cdd:PRK14963 159 MPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLA-LGTPVTRKQVEEAL 237
|
250 260
....*....|....*....|...
gi 1491180861 230 GKATPEAIVKMIDALRMGDFNSA 252
Cdd:PRK14963 238 GLPPQERLRGIAAALAQGDAAEA 260
|
|
| PRK14965 |
PRK14965 |
DNA polymerase III subunits gamma and tau; Provisional |
12-230 |
2.89e-25 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 105.98 E-value: 2.89e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 12 KYRPKKLDDIVDQEEVIQGLKNLLKGDikEMPH-LLFAGPPGTGKTTTALALA--------------------REIYGGQ 70
Cdd:PRK14965 9 KYRPQTFSDLTGQEHVSRTLQNAIDTG--RVAHaFLFTGARGVGKTSTARILAkalnceqgltaepcnvcppcVEITEGR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 71 WRDyVLELNASDERGINVIRERVKifAQYFTPSeKAPFKIVILDEADMMTSEAQTALRRIMEINARVTRFILICNYITRI 150
Cdd:PRK14965 87 SVD-VFEIDGASNTGVDDIRELRE--NVKYLPS-RSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKV 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 151 ISPIQSRTAIFRFKRLPKEGAIQYLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLLQSVSTVTGGKPTVKDVESIVG 230
Cdd:PRK14965 163 PITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDVAELLG 242
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
12-271 |
1.79e-24 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 103.70 E-value: 1.79e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 12 KYRPKKLDDIVDQEEVIQGLKNLLKGDikEMPH-LLFAGPPGTGKTTTALALAREI--------------------YGGQ 70
Cdd:PRK14971 10 KYRPSTFESVVGQEALTTTLKNAIATN--KLAHaYLFCGPRGVGKTTCARIFAKTIncqnltadgeacnecescvaFNEQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 71 wRDY-VLELNASDERGINVIR---ERVKIfaqyftPSEKAPFKIVILDEADMMTSEAQTALRRIMEINARVTRFILICNY 146
Cdd:PRK14971 88 -RSYnIHELDAASNNSVDDIRnliEQVRI------PPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 147 ITRIISPIQSRTAIFRFKRLPKEGAIQYLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLLQSVSTVTGGKPTVKDVE 226
Cdd:PRK14971 161 KHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGNITYKSVI 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1491180861 227 SIVGKATPEAIVKMIDALRMGDFNSARnLLFDFISVSNLDGQEVI 271
Cdd:PRK14971 241 ENLNILDYDYYFRLTDALLAGKVSDSL-LLFDEILNKGFDGSHFI 284
|
|
| PRK05896 |
PRK05896 |
DNA polymerase III subunits gamma and tau; Validated |
6-259 |
5.63e-24 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235638 [Multi-domain] Cd Length: 605 Bit Score: 102.23 E-value: 5.63e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 6 ELLWIEKYRPKKLDDIVDQEEVIQGLKNLLKGDikEMPH-LLFAGPPGTGKTTTALALAREIYGGQWRDY---------- 74
Cdd:PRK05896 3 EITFYRKYRPHNFKQIIGQELIKKILVNAILNN--KLTHaYIFSGPRGIGKTSIAKIFAKAINCLNPKDGdccnscsvce 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 75 ---------VLELNASDERGINVIRERVK-IFAQYFTPSekapFKIVILDEADMMTSEAQTALRRIMEINARVTRFILIC 144
Cdd:PRK05896 81 sintnqsvdIVELDAASNNGVDEIRNIIDnINYLPTTFK----YKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFAT 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 145 NYITRIISPIQSRTAIFRFKRLPKEGAIQYLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLLQSVSTVTGGKPTVKD 224
Cdd:PRK05896 157 TEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSEIDIED 236
|
250 260 270
....*....|....*....|....*....|....*
gi 1491180861 225 VESIVGKATPEAIVKMIDALRMGDFNSARNLLFDF 259
Cdd:PRK05896 237 INKTFGLVDNNKKINLIELIQKNDIEELRNLINEL 271
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
12-248 |
1.59e-22 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 98.24 E-value: 1.59e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 12 KYRPKKLDDIVDQEEVIQGLKNLLkgDIKEMPH-LLFAGPPGTGKTTTALALA--------------------REIYGGQ 70
Cdd:PRK08691 9 KWRPKTFADLVGQEHVVKALQNAL--DEGRLHHaYLLTGTRGVGKTTIARILAkslncenaqhgepcgvcqscTQIDAGR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 71 WRDyVLELNASDERGINVIRErVKIFAQYFTPSEKapFKIVILDEADMMTSEAQTALRRIMEINARVTRFILICNYITRI 150
Cdd:PRK08691 87 YVD-LLEIDAASNTGIDNIRE-VLENAQYAPTAGK--YKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKV 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 151 ISPIQSRTAIFRFKRLPKEGAIQYLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLLQSVSTVTGGKPTVKDVESIVG 230
Cdd:PRK08691 163 PVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQMIG 242
|
250
....*....|....*...
gi 1491180861 231 KATPEAIVKMIDALRMGD 248
Cdd:PRK08691 243 AVDKQYLYELLTGIINQD 260
|
|
| PRK08451 |
PRK08451 |
DNA polymerase III subunits gamma and tau; Validated |
12-303 |
2.51e-22 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236267 [Multi-domain] Cd Length: 535 Bit Score: 97.41 E-value: 2.51e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 12 KYRPKKLDDIVDQEEVIQGLKNLLkgDIKEMPH-LLFAGPPGTGKTTTALALAREIY--------------------GGQ 70
Cdd:PRK08451 7 KYRPKHFDELIGQESVSKTLSLAL--DNNRLAHaYLFSGLRGSGKTSSARIFARALVceqgpsstpcdtciqcqsalENR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 71 WRDyVLELNASDERGINVIR---ERVKifaqyFTPSeKAPFKIVILDEADMMTSEAQTALRRIMEINARVTRFILICNYI 147
Cdd:PRK08451 85 HID-IIEMDAASNRGIDDIReliEQTK-----YKPS-MARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDP 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 148 TRIISPIQSRTAIFRFKRLPKEGAIQYLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLLQSVSTVTGGKPTVKDVES 227
Cdd:PRK08451 158 LKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYCKNAITESKVAD 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 228 IVGKATPEAIVKMIDALrmgdFNSARNLLFDFI-SVSNLDGQEVIklifnELMMRNLLQ------PEVAEVLAEYEYRIL 300
Cdd:PRK08451 238 MLGLLDPSKLEDFFQAI----LNQDKEKLFELLkELEDYEAEMVL-----DEMMLFLKEkflskdSEFSILLYERFFRIL 308
|
...
gi 1491180861 301 TSA 303
Cdd:PRK08451 309 SSA 311
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
12-260 |
5.82e-22 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 96.29 E-value: 5.82e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 12 KYRPKKLDDIVDQEEVIQGLKNLLKGDiKEMPHLLFAGPPGTGKTTTALALA--------------------REIYGGQW 71
Cdd:PRK14959 9 RYRPQTFAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAkalncetaptgepcntceqcRKVTQGMH 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 72 RDyVLELNASDERGINVIReRVKIFAQYfTPSEkAPFKIVILDEADMMTSEAQTALRRIM-EINARVTrFILICNYITRI 150
Cdd:PRK14959 88 VD-VVEIDGASNRGIDDAK-RLKEAIGY-APME-GRYKVFIIDEAHMLTREAFNALLKTLeEPPARVT-FVLATTEPHKF 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 151 ISPIQSRTAIFRFKRLPKEGAIQYLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLLQSVSTVTGGKPTVKDVESIVG 230
Cdd:PRK14959 163 PVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGARGVLG 242
|
250 260 270
....*....|....*....|....*....|
gi 1491180861 231 KATPEAIVKMIDALRMGDFNSARNLLFDFI 260
Cdd:PRK14959 243 LAGQELFLRLMEALAAQDCLGVANVVRELL 272
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
11-234 |
1.06e-21 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 94.77 E-value: 1.06e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 11 EKYRPKKLDDIVDQEEVI-QG--LKNLLKGDikEMPHLLFAGPPGTGKTTTALALAREiyggqWRDYVLELNASDErGIN 87
Cdd:PRK13342 4 ERMRPKTLDEVVGQEHLLgPGkpLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAGA-----TDAPFEALSAVTS-GVK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 88 VIRervKIFAQYFTPSEKAPFKIVILDEADMMTSEAQTALRRIMEINarvtRFILIC----NYITRIISPIQSRTAIFRF 163
Cdd:PRK13342 76 DLR---EVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDG----TITLIGatteNPSFEVNPALLSRAQVFEL 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1491180861 164 KRLPKEGAIQYLKM-ICDSEG--VECSPDVLDKIYEASLGDLRKAINLLQSVSTvTGGKPTVKDVESIVGKATP 234
Cdd:PRK13342 149 KPLSEEDIEQLLKRaLEDKERglVELDDEALDALARLANGDARRALNLLELAAL-GVDSITLELLEEALQKRAA 221
|
|
| PRK14956 |
PRK14956 |
DNA polymerase III subunits gamma and tau; Provisional |
1-284 |
8.36e-21 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184920 [Multi-domain] Cd Length: 484 Bit Score: 92.70 E-value: 8.36e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 1 MSTRLELLWiEKYRPKKLDDIVDQEEVIQGLKNLLKGdiKEMPH-LLFAGPPGTGKTTTALALAR--------------- 64
Cdd:PRK14956 1 MSGTHEVLS-RKYRPQFFRDVIHQDLAIGALQNALKS--GKIGHaYIFFGPRGVGKTTIARILAKrlncenpignepcne 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 65 -----EIYGGQWRDyVLELNASDERGINVIRE---RVKifaqyFTPSeKAPFKIVILDEADMMTSEAQTALRRIMEINAR 136
Cdd:PRK14956 78 ctsclEITKGISSD-VLEIDAASNRGIENIRElrdNVK-----FAPM-GGKYKVYIIDEVHMLTDQSFNALLKTLEEPPA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 137 VTRFILICNYITRIISPIQSRTAIFRFKRLPKEGAIQYLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLLQSVSTVT 216
Cdd:PRK14956 151 HIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFT 230
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1491180861 217 GGKPTVKDVESIVGKATPEAIVKMIDALRMGDfNSARnlLFDFISVSNLDGQEVIKLIFNELMMRNLL 284
Cdd:PRK14956 231 DSKLTGVKIRKMIGYHGIEFLTSFIKSLIDPD-NHSK--SLEILESLYQEGQDIYKFLWDSIEFTHTL 295
|
|
| PRK14969 |
PRK14969 |
DNA polymerase III subunits gamma and tau; Provisional |
12-258 |
1.56e-20 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237873 [Multi-domain] Cd Length: 527 Bit Score: 92.12 E-value: 1.56e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 12 KYRPKKLDDIVDQEEVIQGLKNLLKGdiKEMPH-LLFAGPPGTGKTTTALALAR--------------------EIYGGQ 70
Cdd:PRK14969 9 KWRPKSFSELVGQEHVVRALTNALEQ--QRLHHaYLFTGTRGVGKTTLARILAKslncetgvtatpcgvcsaclEIDSGR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 71 WRDYvLELNASDERGINVIRERVKiFAQYfTPSeKAPFKIVILDEADMMTSEAQTALRRIMEINARVTRFILICNYITRI 150
Cdd:PRK14969 87 FVDL-IEVDAASNTQVDAMRELLD-NAQY-APT-RGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKI 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 151 ISPIQSRTAIFRFKRLPKEGAIQYLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLLQSVSTVTGGKPTVKDVESIVG 230
Cdd:PRK14969 163 PVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGGGTVNESEVRAMLG 242
|
250 260 270
....*....|....*....|....*....|....*..
gi 1491180861 231 KATPEAIVKMIDALRMGDFNS---------ARNLLFD 258
Cdd:PRK14969 243 AIDQDYLFALLEALLAQDGAAllaiadameERSLSFD 279
|
|
| PRK14948 |
PRK14948 |
DNA polymerase III subunit gamma/tau; |
12-256 |
3.57e-20 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 91.18 E-value: 3.57e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 12 KYRPKKLDDIVDQEEVIQGLKN-LLKGDIKemPHLLFAGPPGTGKTTTALALA----------------------REIYG 68
Cdd:PRK14948 9 KYRPQRFDELVGQEAIATTLKNaLISNRIA--PAYLFTGPRGTGKTSSARILAkslnclnsdkptpepcgkcelcRAIAA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 69 GQWRDyVLELNASDERGINVIR---ERvkifAQyFTPSeKAPFKIVILDEADMMTSEAQTAL-RRIMEINARVTrFILIC 144
Cdd:PRK14948 87 GNALD-VIEIDAASNTGVDNIReliER----AQ-FAPV-QARWKVYVIDECHMLSTAAFNALlKTLEEPPPRVV-FVLAT 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 145 NYITRIISPIQSRTAIFRFKRLPKEGAIQYLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLLQSVSTVTGGKpTVKD 224
Cdd:PRK14948 159 TDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSLLPGPI-TPEA 237
|
250 260 270
....*....|....*....|....*....|....*..
gi 1491180861 225 VESIVGkATPEA-IVKMIDALRMGD----FNSARNLL 256
Cdd:PRK14948 238 VWDLLG-AVPEQdLLNLLKALASNDpeslLDSCRQLL 273
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
22-157 |
4.00e-20 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 85.28 E-value: 4.00e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 22 VDQEEVIQGLKNLLKGDIKemPHLLFAGPPGTGKTTTALALAREIygGQWRDYVLELNASDERGINVIRERVKIFAQY-- 99
Cdd:cd00009 1 VGQEEAIEALREALELPPP--KNLLLYGPPGTGKTTLARAIANEL--FRPGAPFLYLNASDLLEGLVVAELFGHFLVRll 76
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1491180861 100 FTPSEKAPFKIVILDEADMMTSEAQTALRRIMEI------NARVTRFILICNY--ITRIISPIQSR 157
Cdd:cd00009 77 FELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETlndlriDRENVRVIGATNRplLGDLDRALYDR 142
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
12-248 |
1.08e-19 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 89.55 E-value: 1.08e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 12 KYRPKKLDDIVDQEEVIQGLKNLLkgDIKEMPH-LLFAGPPGTGKTTTALALAR-------------------------E 65
Cdd:PRK12323 9 KWRPRDFTTLVGQEHVVRALTHAL--EQQRLHHaYLFTGTRGVGKTTLSRILAKslnctgadgeggitaqpcgqcractE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 66 IYGGQWRDYvLELNASDERGINVIrervkifAQYFTPSEKAP----FKIVILDEADMMTSEAQTALRRIMEINARVTRFI 141
Cdd:PRK12323 87 IDAGRFVDY-IEMDAASNRGVDEM-------AQLLDKAVYAPtagrFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFI 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 142 LICNYITRIISPIQSRTAIFRFKRLPKEGAIQYLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLLQSVSTVTGGKPT 221
Cdd:PRK12323 159 LATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAYSAGNVS 238
|
250 260
....*....|....*....|....*..
gi 1491180861 222 VKDVESIVGKATPEAIVKMIDALRMGD 248
Cdd:PRK12323 239 EEAVRGMLGAIDQSYLVRLLDALAAED 265
|
|
| PRK14964 |
PRK14964 |
DNA polymerase III subunits gamma and tau; Provisional |
12-274 |
4.97e-19 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237870 [Multi-domain] Cd Length: 491 Bit Score: 87.53 E-value: 4.97e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 12 KYRPKKLDDIVDQEEVIQGLKNLLKgdIKEMPH-LLFAGPPGTGKTTTA--LALAREIYGGQWRDY-------------- 74
Cdd:PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFT--LNKIPQsILLVGASGVGKTTCAriISLCLNCSNGPTSDPcgtchncisiknsn 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 75 ---VLELNASDERGInvirERVKIF---AQYFTPSEKapFKIVILDEADMMTSEAQTALRRIMEINARVTRFILICNYIT 148
Cdd:PRK14964 84 hpdVIEIDAASNTSV----DDIKVIlenSCYLPISSK--FKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVK 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 149 RIISPIQSRTAIFRFKRLPKEGAIQYLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLLQSVSTVTGGKPTVKDVESI 228
Cdd:PRK14964 158 KIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISEKSVRDL 237
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1491180861 229 VGKATPEAIVKMIDALRMGDFNSARNLLFDFISVSN----LDG-QEVIKLI 274
Cdd:PRK14964 238 LGCVDKHILEDLVEAILLGDAQSALNVFRELCNTSNpviiLEGmLQIIYEI 288
|
|
| PRK14961 |
PRK14961 |
DNA polymerase III subunits gamma and tau; Provisional |
12-271 |
1.09e-18 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184925 [Multi-domain] Cd Length: 363 Bit Score: 85.63 E-value: 1.09e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 12 KYRPKKLDDIVDQEEVIQGLKN-LLKGDIKEMphLLFAGPPGTGKTTTALALA--------------------REIYGGQ 70
Cdd:PRK14961 9 KWRPQYFRDIIGQKHIVTAISNgLSLGRIHHA--WLLSGTRGVGKTTIARLLAkslncqngitsnpcrkciicKEIEKGL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 71 WRDyVLELNASDERGINVIRERVKIFaqYFTPSeKAPFKIVILDEADMMTSEAQTALRRIMEINARVTRFILICNYITRI 150
Cdd:PRK14961 87 CLD-LIEIDAASRTKVEEMREILDNI--YYSPS-KSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKI 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 151 ISPIQSRTAIFRFKRLPKEGAIQYLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLLQSVSTVTGGKPTVKDVESIVG 230
Cdd:PRK14961 163 PKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGKGNINIKNVTDMLG 242
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 1491180861 231 KATPEAIVKMIDALRMGDFNSARnLLFDFISVSNLDGQEVI 271
Cdd:PRK14961 243 LLNEKQSFLLTDALLKKDSKKTM-LLLNKISSIGIEWENIL 282
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
12-212 |
1.09e-18 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 86.54 E-value: 1.09e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 12 KYRPKKLDDIVDQEEVIQGLKNLLKGDikEMPH-LLFAGPPGTGKTTTALALA------REIYGGQWRDYVLE------- 77
Cdd:PRK14954 9 KYRPSKFADITAQEHITHTIQNSLRMD--RVGHgYIFSGLRGVGKTTAARVFAkavncqRMIDDPVYLQEVTEpcgeces 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 78 ---------LNASDERG--------INVIRERVKIFAQyftpseKAPFKIVILDEADMMTSEAQTALRRIMEINARVTRF 140
Cdd:PRK14954 87 crdfdagtsLNISEFDAasnnsvddIRQLRENVRYGPQ------KGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIF 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1491180861 141 ILICNYITRIISPIQSRTAIFRFKRLPKeGAIQ-YLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLLQSV 212
Cdd:PRK14954 161 IFATTELHKIPATIASRCQRFNFKRIPL-DEIQsQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQV 232
|
|
| PRK14952 |
PRK14952 |
DNA polymerase III subunits gamma/tau; |
12-248 |
4.84e-18 |
|
DNA polymerase III subunits gamma/tau;
Pssm-ID: 237866 [Multi-domain] Cd Length: 584 Bit Score: 84.55 E-value: 4.84e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 12 KYRPKKLDDIVDQEEVIQGLKNLLkgDIKEMPH-LLFAGPPGTGKTTTALALAREIY---------------------GG 69
Cdd:PRK14952 6 KYRPATFAEVVGQEHVTEPLSSAL--DAGRINHaYLFSGPRGCGKTSSARILARSLNcaqgptatpcgvcescvalapNG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 70 QWRDYVLELNASDERGINVIRE-RVKIFaqyFTPSEkAPFKIVILDEADMMTSEAQTALRRIMEINARVTRFILICNYIT 148
Cdd:PRK14952 84 PGSIDVVELDAASHGGVDDTRElRDRAF---YAPAQ-SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 149 RIISPIQSRTAIFRFKRLPKEGAIQYLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLL-QSVSTVTGGKPTVKDVES 227
Cdd:PRK14952 160 KVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLdQLLAGAADTHVTYQRALG 239
|
250 260
....*....|....*....|..
gi 1491180861 228 IVGkATPEAIV-KMIDALRMGD 248
Cdd:PRK14952 240 LLG-ATDVALIdDAVDALAADD 260
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
12-248 |
7.86e-18 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 84.00 E-value: 7.86e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 12 KYRPKKLDDIVDQEEVIQGLKNLLkgDIKEMPH-LLFAGPPGTGKTTTALALA-------------------------RE 65
Cdd:PRK14951 9 KYRPRSFSEMVGQEHVVQALTNAL--TQQRLHHaYLFTGTRGVGKTTVSRILAkslncqgpdgqggitatpcgvcqacRD 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 66 IYGGQWRDYVlELNASDERGINvirERVKIFAQ-YFTPSEkAPFKIVILDEADMMTSEAQTALRRIMEINARVTRFILIC 144
Cdd:PRK14951 87 IDSGRFVDYT-ELDAASNRGVD---EVQQLLEQaVYKPVQ-GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLAT 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 145 NYITRIISPIQSRTAIFRFKRLPKEGAIQYLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLLQSVSTVTGGKPTVKD 224
Cdd:PRK14951 162 TDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFGSGQLQEAA 241
|
250 260
....*....|....*....|....
gi 1491180861 225 VESIVGKATPEAIVKMIDALRMGD 248
Cdd:PRK14951 242 VRQMLGSVDRSHVFRLIDALAQGD 265
|
|
| PRK14955 |
PRK14955 |
DNA polymerase III subunits gamma and tau; Provisional |
12-212 |
1.38e-17 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184919 [Multi-domain] Cd Length: 397 Bit Score: 82.63 E-value: 1.38e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 12 KYRPKKLDDIVDQEEVIQGLKNLLKgdIKEMPH-LLFAGPPGTGKTTTALALA------REIYGGQW------------- 71
Cdd:PRK14955 9 KYRPKKFADITAQEHITRTIQNSLR--MGRVGHgYIFSGLRGVGKTTAARVFAkavncqRMIDDADYlqevtepcgeces 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 72 -RDY-------VLELNASDERG---INVIRERVKIFAQyftpseKAPFKIVILDEADMMTSEAQTALRRIMEINARVTRF 140
Cdd:PRK14955 87 cRDFdagtslnISEFDAASNNSvddIRLLRENVRYGPQ------KGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIF 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1491180861 141 ILICNYITRIISPIQSRTAIFRFKRLPKEGAIQYLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLLQSV 212
Cdd:PRK14955 161 IFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQV 232
|
|
| PRK06647 |
PRK06647 |
DNA polymerase III subunits gamma and tau; Validated |
12-244 |
9.48e-17 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235845 [Multi-domain] Cd Length: 563 Bit Score: 80.58 E-value: 9.48e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 12 KYRPKKLDDIVDQEEVIQGLKNLLKGDiKEMPHLLFAGPPGTGKTTTALALAR--------------------EIYGGQW 71
Cdd:PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARclncvngptpmpcgecssckSIDNDNS 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 72 RDyVLELNASDERGINVIRErvkIFAQYFTPSEKAPFKIVILDEADMMTSEAQTALRRIMEINARVTRFILICNYITRII 151
Cdd:PRK06647 88 LD-VIEIDGASNTSVQDVRQ---IKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 152 SPIQSRTAIFRFKRLPKEGAIQYLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLLQSVSTVTGGKPTVKDVESIVGK 231
Cdd:PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDSDITLEQIRSKMGL 243
|
250
....*....|...
gi 1491180861 232 ATPEAIVKMIDAL 244
Cdd:PRK06647 244 TGDEFLEKLASSI 256
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
12-248 |
1.07e-16 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 81.05 E-value: 1.07e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 12 KYRPKKLDDIVDQEEVIQGLKNLLKGDikEMPH-LLFAGPPGTGKTTT----ALAL----------------AREIYGGQ 70
Cdd:PRK07003 9 KWRPKDFASLVGQEHVVRALTHALDGG--RLHHaYLFTGTRGVGKTTLsrifAKALncetgvtsqpcgvcraCREIDEGR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 71 WRDYVlELNASDERGIN---VIRERvkifAQYfTPSEkAPFKIVILDEADMMTSEAQTALRRIMEINARVTRFILICNYI 147
Cdd:PRK07003 87 FVDYV-EMDAASNRGVDemaALLER----AVY-APVD-ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 148 TRIISPIQSRTAIFRFKRLPKEGAIQYLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLLQSVSTVTGGKPTVKDVES 227
Cdd:PRK07003 160 QKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSG 239
|
250 260
....*....|....*....|.
gi 1491180861 228 IVGKATPEAIVKMIDALRMGD 248
Cdd:PRK07003 240 MLGALDQTYMVRLLDALAAGD 260
|
|
| DNA_pol3_delta2 |
pfam13177 |
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required ... |
24-167 |
9.20e-16 |
|
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA.
Pssm-ID: 433013 [Multi-domain] Cd Length: 161 Bit Score: 73.40 E-value: 9.20e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 24 QEEVIQGLKNLLKGDikEMPH-LLFAGPPGTGKTTTALALAREIYGGQWRDY-----------VLELN-------ASDER 84
Cdd:pfam13177 2 QPEAIQLLQNSLENG--RLSHaYLFSGPEGVGKLELALAFAKALFCEEPGDDlpcgqcrscrrIESGNhpdlviiEPEGQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 85 GINV--IRERVKIFAQyfTPSEkAPFKIVILDEADMMTSEAQTALRRIMEINARVTRFILICNYITRIISPIQSRTAIFR 162
Cdd:pfam13177 80 SIKIdqIRELQKEFSK--SPYE-GKKKVYIIEDAEKMTASAANSLLKFLEEPPGNTVIILLTENPSRLLPTIRSRCQIIR 156
|
....*
gi 1491180861 163 FKRLP 167
Cdd:pfam13177 157 FKPLS 161
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
45-166 |
1.64e-15 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 71.86 E-value: 1.64e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 45 LLFAGPPGTGKTTTALALAREIYGgqwrdYVLELNASDERGINVIrERVKIFAQYFTPSEKAPFKIVILDEAD------- 117
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGA-----PFIEISGSELVSKYVG-ESEKRLRELFEAAKKLAPCVIFIDEIDalagsrg 74
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1491180861 118 ----MMTSEAQTALRRIME---INARVTRFILICNYITRIISPIQSRTAIFRFKRL 166
Cdd:pfam00004 75 sggdSESRRVVNQLLTELDgftSSNSKVIVIAATNRPDKLDPALLGRFDRIIEFPL 130
|
|
| PRK14958 |
PRK14958 |
DNA polymerase III subunits gamma and tau; Provisional |
12-248 |
2.95e-15 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184922 [Multi-domain] Cd Length: 509 Bit Score: 76.31 E-value: 2.95e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 12 KYRPKKLDDIVDQEEVIQGLKNLLkgDIKEMPH-LLFAGPPGTGKTTTALALA--------------------REIYGGQ 70
Cdd:PRK14958 9 KWRPRCFQEVIGQAPVVRALSNAL--DQQYLHHaYLFTGTRGVGKTTISRILAkclncekgvsanpcndcencREIDEGR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 71 WRDyVLELNASDERGINVIRERVKIFAqyFTPSeKAPFKIVILDEADMMTSEAQTALRRIMEINARVTRFILICNYITRI 150
Cdd:PRK14958 87 FPD-LFEVDAASRTKVEDTRELLDNIP--YAPT-KGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 151 ISPIQSRTAIFRFKRLPKEGAIQYLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLLQSVSTVTGGKPTVKDVESIVG 230
Cdd:PRK14958 163 PVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIADVKTMLG 242
|
250 260
....*....|....*....|
gi 1491180861 231 KATPEAIVKMIDAL--RMGD 248
Cdd:PRK14958 243 TIEPLLLFDILEALaaKAGD 262
|
|
| HLD_clamp_RFC |
cd18140 |
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein ... |
166-229 |
1.23e-14 |
|
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein clamp loader complex that forms a stable ATP-dependent complex with the sliding clamp, PCNA, which binds specifically to primed DNA. RFC subunits belong to the clamp loader clade of the AAA+ superfamily.
Pssm-ID: 350842 [Multi-domain] Cd Length: 63 Bit Score: 67.55 E-value: 1.23e-14
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1491180861 166 LPKEGAIQYLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLLQSVSTvTGGKPTVKDVESIV 229
Cdd:cd18140 1 LSKEQIVKRLREICKKEGVKIDEEALEAIAEKSEGDMRKAINDLQAAAA-GGGVITEEDVYEVA 63
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
5-58 |
2.83e-14 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 73.72 E-value: 2.83e-14
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1491180861 5 LELLWIEKYRPKKLDDIVDQEEVIQGLKNLLKgdIKEMPHLLFAGPPGTGKTTT 58
Cdd:PRK04132 5 LEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVK--TGSMPHLLFAGPPGVGKCLT 56
|
|
| RarA |
COG2256 |
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ... |
14-234 |
4.29e-14 |
|
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];
Pssm-ID: 441857 [Multi-domain] Cd Length: 439 Bit Score: 72.40 E-value: 4.29e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 14 RPKKLDDIVDQEEVI-QG--LKNLLKGDIkeMPHLLFAGPPGTGKTTTALALAREIYggqwRDYVlELNASDErGINVIR 90
Cdd:COG2256 20 RPRTLDEVVGQEHLLgPGkpLRRAIEAGR--LSSMILWGPPGTGKTTLARLIANATD----AEFV-ALSAVTS-GVKDIR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 91 ErvkifaqyftpsekapfkivILDEADMMTSEAQTALRRIMEINarvtRF-----------------ILIC----N-YIT 148
Cdd:COG2256 92 E--------------------VIEEARERRAYGRRTILFVDEIH----RFnkaqqdallphvedgtiTLIGatteNpSFE 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 149 rIISPIQSRTAIFRFKRLPKEG-------AIQYLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLLQSV--STVTGGK 219
Cdd:COG2256 148 -VNSALLSRCRVFVLKPLSEEDleqllerALADDERGLGGYKLELDDEALEALARLADGDARRALNALELAvlSAPPDGV 226
|
250
....*....|....*..
gi 1491180861 220 P--TVKDVESIVGKATP 234
Cdd:COG2256 227 IeiTLELVEEALQRRAL 243
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
12-191 |
7.47e-14 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 72.33 E-value: 7.47e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 12 KYRPKKLDDIVDQEEVIQGLKN-LLKGDIKempH-LLFAGPPGTGKTTTALALAREIY---------------------G 68
Cdd:PRK07764 8 RYRPATFAEVIGQEHVTEPLSTaLDSGRIN---HaYLFSGPRGCGKTSSARILARSLNcvegptstpcgecdscvalapG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 69 GQWRDYVLELNASDERGINVIRE-RVKIFaqyFTPSEkAPFKIVILDEADMMTSEAQTALRRIME------InarvtrFI 141
Cdd:PRK07764 85 GPGSLDVTEIDAASHGGVDDARElRERAF---FAPAE-SRYKIFIIDEAHMVTPQGFNALLKIVEeppehlK------FI 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1491180861 142 licnYIT----RIISPIQSRTAIFRFKRLPKEGAIQYLKMICDSEGVECSPDVL 191
Cdd:PRK07764 155 ----FATtepdKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVL 204
|
|
| PRK14957 |
PRK14957 |
DNA polymerase III subunits gamma and tau; Provisional |
12-244 |
1.72e-13 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184921 [Multi-domain] Cd Length: 546 Bit Score: 70.88 E-value: 1.72e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 12 KYRPKKLDDIVDQEEVIQGLKNLLkgDIKEMPH-LLFAGPPGTGKTTTALALAR--------------------EIYGGQ 70
Cdd:PRK14957 9 KYRPQSFAEVAGQQHALNSLVHAL--ETQKVHHaYLFTGTRGVGKTTLGRLLAKclncktgvtaepcnkcencvAINNNS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 71 WRDyVLELNASDERGINVIRErvKIFAQYFTPSEkAPFKIVILDEADMMTSEAQTALRRIMEINARVTRFILICNYITRI 150
Cdd:PRK14957 87 FID-LIEIDAASRTGVEETKE--ILDNIQYMPSQ-GRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKI 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 151 ISPIQSRTAIFRFKRLPKEGAIQYLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLLQSVSTVTGGKPTVKDVESIVG 230
Cdd:PRK14957 163 PVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGELKQAQIKQMLG 242
|
250
....*....|....
gi 1491180861 231 KATPEAIVKMIDAL 244
Cdd:PRK14957 243 IIDSEEVYSIINAI 256
|
|
| PRK09111 |
PRK09111 |
DNA polymerase III subunits gamma and tau; Validated |
12-248 |
4.00e-13 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236382 [Multi-domain] Cd Length: 598 Bit Score: 69.93 E-value: 4.00e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 12 KYRPKKLDDIVDQEEVIQGLKNLLK-GDIkemPH-LLFAGPPGTGKTTTALALAR------------------------- 64
Cdd:PRK09111 17 KYRPQTFDDLIGQEAMVRTLTNAFEtGRI---AQaFMLTGVRGVGKTTTARILARalnyegpdgdggptidlcgvgehcq 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 65 EIYGGQWRDyVLELNASDERGINVIRErvKIFAQYFTPSEkAPFKIVILDEADMMTSEAQTALRRIMEINARVTRFILIC 144
Cdd:PRK09111 94 AIMEGRHVD-VLEMDAASHTGVDDIRE--IIESVRYRPVS-ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFAT 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 145 NYITRIISPIQSRTAIFRFKRLPKEGAIQYLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLL-QSVSTvTGGKPTVK 223
Cdd:PRK09111 170 TEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLdQAIAH-GAGEVTAE 248
|
250 260
....*....|....*....|....*
gi 1491180861 224 DVESIVGKATPEAIVKMIDALRMGD 248
Cdd:PRK09111 249 AVRDMLGLADRARVIDLFEALMRGD 273
|
|
| PRK14960 |
PRK14960 |
DNA polymerase III subunit gamma/tau; |
12-323 |
7.18e-13 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237868 [Multi-domain] Cd Length: 702 Bit Score: 69.31 E-value: 7.18e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 12 KYRPKKLDDIVDQEEVIQGLKNLL-KGDIKEMphLLFAGPPGTGKTTTALALAR--------------------EIYGGQ 70
Cdd:PRK14960 8 KYRPRNFNELVGQNHVSRALSSALeRGRLHHA--YLFTGTRGVGKTTIARILAKclncetgvtstpcevcatckAVNEGR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 71 WRDyVLELNASDERGINVIRERVKIFAqyFTPSEkAPFKIVILDEADMMTSEAQTALRRIMEINARVTRFILICNYITRI 150
Cdd:PRK14960 86 FID-LIEIDAASRTKVEDTRELLDNVP--YAPTQ-GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 151 ISPIQSRTAIFRFKRLPKEGAIQYLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLLQSVSTVTGGKPTVKDVESIVG 230
Cdd:PRK14960 162 PITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLG 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 231 KATPEAIVKMIDALRMGDFNSARNLLFDFiSVSNLDGQEVIKLIFNELMMRNLLQ--PEVaevlaeyeyriltSAYYEIQ 308
Cdd:PRK14960 242 LIDRTIIYDLILAVHQNQREKVSQLLLQF-RYQALDVSLVLDQLISTLHELALLQylPEL-------------GLKYSEE 307
|
330
....*....|....*
gi 1491180861 309 LTALLAKLSRLLGSR 323
Cdd:PRK14960 308 INAKILQLSKLISAQ 322
|
|
| PRK07399 |
PRK07399 |
DNA polymerase III subunit delta'; Validated |
17-214 |
1.79e-10 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236011 [Multi-domain] Cd Length: 314 Bit Score: 61.07 E-value: 1.79e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 17 KLDDIVDQEEVIQGLKNLLKGDiKEMPHLLFAGPPGTGKTTTALALAREIYGGQ-------------------W--RDYV 75
Cdd:PRK07399 2 LFANLIGQPLAIELLTAAIKQN-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGspsknirrrleegnhpdllWvePTYQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 76 LE---LNASD--ERGIN-----VIR-ERVKIFAQYF-TPSEKAPFKIVILDEADMMTSEAQTALRRIMEINARVTrFILI 143
Cdd:PRK07399 81 HQgklITASEaeEAGLKrkappQIRlEQIREIKRFLsRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGT-LILI 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1491180861 144 CNYITRIISPIQSRTAIFRFKRLPKEGAIQYLK-MICDSEGVECSPDVLDkIYEASLGDLRKAINLLQSVST 214
Cdd:PRK07399 160 APSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKrLGDEEILNINFPELLA-LAQGSPGAAIANIEQLQSIPP 230
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
44-165 |
2.22e-10 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 58.15 E-value: 2.22e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 44 HLLFAGPPGTGKTTTALALAREIYGGQWRdyVLELNASDERGINVIRERVKIFAQYFTPS-------------EKAPFKI 110
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGG--VIYIDGEDILEEVLDQLLLIIVGGKKASGsgelrlrlalalaRKLKPDV 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1491180861 111 VILDEADMMTSEAQTALRRIME------INARVTRFILICnyITRIISPIQSRTAIFRFKR 165
Cdd:smart00382 82 LILDEITSLLDAEQEALLLLLEelrlllLLKSEKNLTVIL--TTNDEKDLGPALLRRRFDR 140
|
|
| PRK09112 |
PRK09112 |
DNA polymerase III subunit delta'; Validated |
42-236 |
8.24e-10 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 169667 [Multi-domain] Cd Length: 351 Bit Score: 59.28 E-value: 8.24e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 42 MPH-LLFAGPPGTGKTTTALALA--------------------------REIYGGQWRDyVLELNAS-DER------GIN 87
Cdd:PRK09112 44 LHHaLLFEGPEGIGKATLAFHLAnhilshpdpaeapetladpdpaspvwRQIAQGAHPN-LLHITRPfDEKtgkfktAIT 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 88 V--IRERVKIFAQyfTPSEKApFKIVILDEADMMTSEAQTALRRIMEINARVTRFILICNYITRIISPIQSRTAIFRFKR 165
Cdd:PRK09112 123 VdeIRRVGHFLSQ--TSGDGN-WRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKP 199
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1491180861 166 LPKEGAIQYLKMIcdSEGVECSPDVLDKIYEASLGDLRKAINLLQSvstvtGGKPTVKDVESIVGKATPEA 236
Cdd:PRK09112 200 LDDDELKKALSHL--GSSQGSDGEITEALLQRSKGSVRKALLLLNY-----GGLEIIATIDQLLAGSGPDA 263
|
|
| Rep_fac_C |
pfam08542 |
Replication factor C C-terminal domain; This is the C-terminal domain of RFC (replication ... |
232-315 |
8.94e-10 |
|
Replication factor C C-terminal domain; This is the C-terminal domain of RFC (replication factor-C) protein of the clamp loader complex which binds to the DNA sliding clamp (proliferating cell nuclear antigen, PCNA). The five modules of RFC assemble into a right-handed spiral, which results in only three of the five RFC subunits (RFC-A, RFC-B and RFC-C) making contact with PCNA, leaving a wedge-shaped gap between RFC-E and the PCNA clamp-loader complex. The C-terminal is vital for the correct orientation of RFC-E with respect to RFC-A.
Pssm-ID: 462513 [Multi-domain] Cd Length: 87 Bit Score: 54.79 E-value: 8.94e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 232 ATPEAIVKMIDALRMGDFNSARNLLFDFISVSNLDGQEVIKLIFNELMMRNL---LQPEVAEVLAEYEYRILTSAYYEIQ 308
Cdd:pfam08542 1 PHPEDIEEILNSCLNGDFDEAYKKVRELLVEKGYSLQDIITQLHRVVKSLDLpeeVKLELLEKLGEIEYRLSEGASEKLQ 80
|
....*..
gi 1491180861 309 LTALLAK 315
Cdd:pfam08542 81 LSALLAA 87
|
|
| PRK13341 |
PRK13341 |
AAA family ATPase; |
1-232 |
1.55e-09 |
|
AAA family ATPase;
Pssm-ID: 237354 [Multi-domain] Cd Length: 725 Bit Score: 58.91 E-value: 1.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 1 MSTRLELLwIEKYRPKKLDDIVDQEEVIqGLKNLLKGDIK--EMPHLLFAGPPGTGKTTtalaLAReIYGGQWRDYVLEL 78
Cdd:PRK13341 11 MSQSEAPL-ADRLRPRTLEEFVGQDHIL-GEGRLLRRAIKadRVGSLILYGPPGVGKTT----LAR-IIANHTRAHFSSL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 79 NASdERGINVIRERVKIFAQYFtpsEKAPFK-IVILDEADMMTSEAQTALRRIMEiNARVTrfiLIC----NYITRIISP 153
Cdd:PRK13341 84 NAV-LAGVKDLRAEVDRAKERL---ERHGKRtILFIDEVHRFNKAQQDALLPWVE-NGTIT---LIGatteNPYFEVNKA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 154 IQSRTAIFRFKRLPKEGAIQYL-KMICDSEG------VECSPDVLDKIYEASLGDLRKAINLLQSVSTVTGGKP-TVKDV 225
Cdd:PRK13341 156 LVSRSRLFRLKSLSDEDLHQLLkRALQDKERgygdrkVDLEPEAEKHLVDVANGDARSLLNALELAVESTPPDEdGLIDI 235
|
250
....*....|...
gi 1491180861 226 ------ESIVGKA 232
Cdd:PRK13341 236 tlaiaeESIQQRA 248
|
|
| HLD_clamp_pol_III_gamma_tau |
cd18137 |
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit ... |
166-230 |
2.32e-09 |
|
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit gamma/tau is part of the DNA polymerase III holoenzyme. Gamma and tau subunits are isoforms, both containing the helical lid domain. Gamma interacts with the delta subunit to transfer the beta subunit on the DNA while tau serves as a scaffold to help in the dimerization of the core complex. Both are members of the clamp-loader clade of the AAA+ superfamily.
Pssm-ID: 350839 [Multi-domain] Cd Length: 65 Bit Score: 52.89 E-value: 2.32e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1491180861 166 LPKEGAIQYLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLLQSVSTVTGGKPTVKDVESIVG 230
Cdd:cd18137 1 ISVEDIVGRLAHILEKEGIEIEDEALELIARAAEGSMRDALSLLDQAIAFGGGRVTLDDVREMLG 65
|
|
| PRK05564 |
PRK05564 |
DNA polymerase III subunit delta'; Validated |
17-176 |
3.24e-09 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180132 [Multi-domain] Cd Length: 313 Bit Score: 56.96 E-value: 3.24e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 17 KLDDIVDQEEVIQGLKNLLKGdiKEMPHL-LFAGPPGTGKTTTALALAREIYG-GQWRDYV--LELNASDERGINVIRER 92
Cdd:PRK05564 2 SFHTIIGHENIKNRIKNSIIK--NRFSHAhIIVGEDGIGKSLLAKEIALKILGkSQQREYVdiIEFKPINKKSIGVDDIR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 93 VKIfaqyfTPSEKAPF----KIVILDEADMMTSEAQTALRRIMEINARVTRFILICNYITRIISPIQSRTAIFRFKRLPK 168
Cdd:PRK05564 80 NII-----EEVNKKPYegdkKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSK 154
|
....*...
gi 1491180861 169 EGAIQYLK 176
Cdd:PRK05564 155 EEIEKFIS 162
|
|
| rad24 |
TIGR00602 |
checkpoint protein rad24; All proteins in this family for which functions are known are ... |
8-223 |
3.31e-09 |
|
checkpoint protein rad24; All proteins in this family for which functions are known are involved in DNA damage tolerance (likely cell cycle checkpoints).This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129690 [Multi-domain] Cd Length: 637 Bit Score: 58.04 E-value: 3.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 8 LWIEKYRPKKLDDIVDQEEVIQGLKNLLKGDIKE-MPH--LLFAGPPGTGKTTTALALAREIyGGQWRDYV----LELNA 80
Cdd:TIGR00602 73 PWVEKYKPETQHELAVHKKKIEEVETWLKAQVLEnAPKriLLITGPSGCGKSTTIKILSKEL-GIQVQEWSnptlPDFQK 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 81 SDERGINVIRERVKIF-----------------AQYFTPSEKAPFKIVILDEADMMTSEAQTALRRIMEIN-ARVTRF-I 141
Cdd:TIGR00602 152 NDHKVTLSLESCFSNFqsqievfsefllratnkLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKyVSIGRCpL 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 142 LICnyITRIISPIQS--------------------RTAIFRFKRLPKEGAIQYLKMICDSEGVECSPDV-------LDKI 194
Cdd:TIGR00602 232 VFI--ITESLEGDNNqrrllfpaetimnkeileepRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIkvpkktsVELL 309
|
250 260
....*....|....*....|....*....
gi 1491180861 195 YEASLGDLRKAINLLQSVSTVTGGKPTVK 223
Cdd:TIGR00602 310 CQGCSGDIRSAINSLQFSSSKSGSLPIKK 338
|
|
| PRK06645 |
PRK06645 |
DNA polymerase III subunits gamma and tau; Validated |
9-263 |
3.78e-09 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180643 [Multi-domain] Cd Length: 507 Bit Score: 57.56 E-value: 3.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 9 WIEKYRPKKLDDIVDQEEVIQGLKNLLKGDIKEMPHLLfAGPPGTGKTTTALALAREI---------------------- 66
Cdd:PRK06645 11 FARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLL-TGIRGVGKTTSARIIAKAVncsalitenttiktceqctnci 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 67 -YGGQWRDYVLELNASDERGINVIReRVKIFAQYFTPSEKapFKIVILDEADMMTSEAQTALRRIMEINARVTRFILICN 145
Cdd:PRK06645 90 sFNNHNHPDIIEIDAASKTSVDDIR-RIIESAEYKPLQGK--HKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATT 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 146 YITRIISPIQSRTAIFRFKRLPKEGAIQYLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLLQ---SVSTVTGGKPTV 222
Cdd:PRK06645 167 EVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDqaaSMSAKSDNIISP 246
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 1491180861 223 KDVESIVGKATPEAIVKMIDALRMGDFNSARNLLFDFISVS 263
Cdd:PRK06645 247 QVINQMLGLVDSSVIIEFVEYIIHRETEKAINLINKLYGSS 287
|
|
| RuvB_N |
pfam05496 |
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the ... |
14-65 |
5.94e-09 |
|
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Pssm-ID: 398900 [Multi-domain] Cd Length: 159 Bit Score: 54.43 E-value: 5.94e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1491180861 14 RPKKLDDIVDQEEVIQGLKNLLKGDIKE---MPHLLFAGPPGTGKTTTALALARE 65
Cdd:pfam05496 2 RPRTLDEYIGQEKVKENLKIFIEAAKQRgeaLDHVLLYGPPGLGKTTLANIIANE 56
|
|
| ruvB |
PRK00080 |
Holliday junction branch migration DNA helicase RuvB; |
14-65 |
9.89e-09 |
|
Holliday junction branch migration DNA helicase RuvB;
Pssm-ID: 234619 [Multi-domain] Cd Length: 328 Bit Score: 55.91 E-value: 9.89e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1491180861 14 RPKKLDDIVDQEEVIQGLKNLLKGDIKE---MPHLLFAGPPGTGKTTTALALARE 65
Cdd:PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKKRgeaLDHVLLYGPPGLGKTTLANIIANE 74
|
|
| HolA |
COG1466 |
DNA polymerase III, delta subunit [Replication, recombination and repair]; |
109-285 |
4.95e-08 |
|
DNA polymerase III, delta subunit [Replication, recombination and repair];
Pssm-ID: 441075 [Multi-domain] Cd Length: 305 Bit Score: 53.33 E-value: 4.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 109 KIVILDEADMMT--SEAQTALRRIMEINARVTRFILICNYI---TRIISPIQSRTAIFRFKRLPKEGAIQYLKMICDSEG 183
Cdd:COG1466 64 RLVIVRNAEFLKkpGEGLEALEAYLANPPPDTVLVLTAGKLdkrKKLFKALEKAGVVVECYPLKERELPAWIRQRLKAAG 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 184 VECSPDVLDKIYEASLGDLRKAINLLQSVSTVTGGKP--TVKDVESIVGKATPEAIVKMIDALRMGDFNSARNLLFDFIS 261
Cdd:COG1466 144 LRIDPDAAQLLAERVGGDLLALAQELEKLALYAGDGGtiTLEDVEALVGDSAEFNVFDLADALLAGDAARALRILRRLLA 223
|
170 180
....*....|....*....|....*..
gi 1491180861 262 vsnlDGQEVIKL---IFNELmmRNLLQ 285
Cdd:COG1466 224 ----EGEEPVLIlaaLARQF--RLLLQ 244
|
|
| CDC6 |
COG1474 |
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair]; |
13-244 |
1.07e-07 |
|
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
Pssm-ID: 441083 [Multi-domain] Cd Length: 389 Bit Score: 52.93 E-value: 1.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 13 YRPkklDDIVDQEEVIQGLKNLLKGDIKEM--PHLLFAGPPGTGKTTTALALAREIYggqwrdyvlelNASDERGINVIR 90
Cdd:COG1474 23 YVP---DRLPHREEEIEELASALRPALRGErpSNVLIYGPTGTGKTAVAKYVLEELE-----------EEAEERGVDVRV 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 91 ERV---------KIFAQ---YFTPSEKAPFK----------------------IVILDEADMMTSEAQT----ALRRIME 132
Cdd:COG1474 89 VYVncrqastryRVLSRileELGSGEDIPSTglstdelfdrlyealderdgvlVVVLDEIDYLVDDEGDdllyQLLRANE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 133 I--NARVTrFILICNYIT-------RIISPIQSRTAIFrfkrlPKEGAIQyLKMICDS-------EGVeCSPDVLDKIYE 196
Cdd:COG1474 169 EleGARVG-VIGISNDLEflenldpRVKSSLGEEEIVF-----PPYDADE-LRDILEDraelafyDGV-LSDEVIPLIAA 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 197 AS---LGDLRKAINLLQS---------VSTVtggkpTVKDVESIVGKATPEAIVKMIDAL 244
Cdd:COG1474 241 LAaqeHGDARKAIDLLRVageiaeregSDRV-----TEEHVREAREKIERDRLLEVLRGL 295
|
|
| COG1223 |
COG1223 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
18-66 |
1.13e-07 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440836 [Multi-domain] Cd Length: 246 Bit Score: 51.81 E-value: 1.13e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1491180861 18 LDDIVDQEEVIQGLKNLLK-----GDIKEM-----PHLLFAGPPGTGKTTTALALAREI 66
Cdd:COG1223 1 LDDVVGQEEAKKKLKLIIKelrrrENLRKFglwppRKILFYGPPGTGKTMLAEALAGEL 59
|
|
| RuvB |
COG2255 |
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, ... |
14-65 |
1.42e-07 |
|
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, recombination and repair];
Pssm-ID: 441856 [Multi-domain] Cd Length: 337 Bit Score: 52.39 E-value: 1.42e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1491180861 14 RPKKLDDIVDQEEVIQGLKNLLKGDIKE---MPHLLFAGPPGTGKTTTALALARE 65
Cdd:COG2255 23 RPKRLDEYIGQEKVKENLKIFIEAAKKRgeaLDHVLLYGPPGLGKTTLAHIIANE 77
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
10-82 |
2.33e-07 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 51.84 E-value: 2.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 10 IEKYRPKKLDDIVDQEEVIQGLKNLLKG-----------DIKEMPHLLFAGPPGTGKTTTALALAREiyggqWRDYVLEL 78
Cdd:COG0464 148 LLELREAILDDLGGLEEVKEELRELVALplkrpelreeyGLPPPRGLLLYGPPGTGKTLLARALAGE-----LGLPLIEV 222
|
....
gi 1491180861 79 NASD 82
Cdd:COG0464 223 DLSD 226
|
|
| holA |
TIGR01128 |
DNA polymerase III, delta subunit; DNA polymerase III delta (holA) and delta prime (holB) ... |
160-285 |
2.10e-06 |
|
DNA polymerase III, delta subunit; DNA polymerase III delta (holA) and delta prime (holB) subunits are distinct proteins encoded by separate genes. The delta prime subunit (holB) exhibits sequence homology to the tau and gamma subunits (dnaX), but the delta subunit (holA) does not demonstrate this same homology with dnaX. The delta, delta prime, gamma, chi and psi subunits form the gamma complex subassembly of DNA polymerase III holoenzyme, which couples ATP to assemble the ring-shaped beta subunit around DNA forming a DNA sliding clamp. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273455 [Multi-domain] Cd Length: 302 Bit Score: 48.41 E-value: 2.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 160 IFRFKRLPKEGAIQYLKMICDSEGVECSPDVLD---KIYEASLGDLRKAINLLQSvsTVTGGKPTVKDVESIVGKATPEA 236
Cdd:TIGR01128 105 IVECKTPKEQELPRWIQARLKKLGLRIDPDAVQllaELVEGNLLAIAQELEKLAL--YAPDGKITLEDVEEAVSDSARFN 182
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1491180861 237 IVKMIDALRMGDFNSARNLLFDFIsvsnLDGQEVIKLIfnELMMRNLLQ 285
Cdd:TIGR01128 183 VFDLTDALLEGKAARALRILKGLL----GEGEEPLILL--ALLQRQLRL 225
|
|
| Rad17 |
pfam03215 |
Rad17 P-loop domain; |
8-66 |
2.93e-06 |
|
Rad17 P-loop domain;
Pssm-ID: 367398 [Multi-domain] Cd Length: 186 Bit Score: 46.88 E-value: 2.93e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1491180861 8 LWIEKYRPKKLDDIVDQEEVIQGLKNLLKGDIKE-MPH--LLFAGPPGTGKTTTALALAREI 66
Cdd:pfam03215 8 QWYEKYKPNCLEQLAVHKRKIKDVQEWLDAMFLEnAKHriLLISGPSGCGKSTVIKELSKEL 69
|
|
| RepA_RSF1010_like |
cd01125 |
Hexameric Replicative Helicase RepA of plasmid RSF1010 and related proteins; This family ... |
46-144 |
7.87e-06 |
|
Hexameric Replicative Helicase RepA of plasmid RSF1010 and related proteins; This family includes the homo-hexameric replicative helicase RepA encoded by plasmid RSF1010. RSF1010 is found in most Gram-negative bacteria and some Gram-positive bacteria . The RepA protein of Plasmid RSF1010 is a 5'-3' DNA helicase which can utilize ATP, dATP, GTP and dGTP (and CTP and dCTP to a lesser extent).
Pssm-ID: 410870 Cd Length: 238 Bit Score: 46.22 E-value: 7.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 46 LFAGPPGTGKTTTALALAREIYGGQ-WRDY-------VLELNAsdERGINVIRERVK-IFAQYFTPSEKAPFKIVI--LD 114
Cdd:cd01125 5 MLVGPPGSGKSFLALDLAVAVATGRdWLGErrvkqgrVVYLAA--EDPRDGLRRRLKaIGAHLGDEDAALAENLVIenLR 82
|
90 100 110
....*....|....*....|....*....|
gi 1491180861 115 EADMMTSEAQTALRRIMEinaRVTRFILIC 144
Cdd:cd01125 83 GKPVSIDAEAPELERIIE---ELEGVRLII 109
|
|
| T7SS_EccA |
TIGR03922 |
type VII secretion AAA-ATPase EccA; This model represents the AAA family ATPase, EccA, of the ... |
44-116 |
1.68e-05 |
|
type VII secretion AAA-ATPase EccA; This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 188437 [Multi-domain] Cd Length: 557 Bit Score: 46.38 E-value: 1.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 44 HLLFAGPPGTGKTTTALALAReIYGGqwrdyvLELNASDErginvIRE--RVKIFAQYFTPSE--------KAPFKIVIL 113
Cdd:TIGR03922 314 HMLFAGPPGTGKTTIARVVAK-IYCG------LGVLRKPL-----VREvsRADLIGQYIGESEaktneiidSALGGVLFL 381
|
...
gi 1491180861 114 DEA 116
Cdd:TIGR03922 382 DEA 384
|
|
| RecA-like_protease |
cd19481 |
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
45-169 |
1.78e-05 |
|
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 44.20 E-value: 1.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 45 LLFAGPPGTGKTTTALALAREiyggqWRDYVLELNASD--ERGINVIRERV-KIFAQyftpSEKAPFKIVILDEADMM-- 119
Cdd:cd19481 29 ILLYGPPGTGKTLLAKALAGE-----LGLPLIVVKLSSllSKYVGESEKNLrKIFER----ARRLAPCILFIDEIDAIgr 99
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1491180861 120 ----------TSEAQTALRRIMEINARVTRFILIC--NYITRIISpiqsrtAIFRFKRLPKE 169
Cdd:cd19481 100 krdssgesgeLRRVLNQLLTELDGVNSRSKVLVIAatNRPDLLDP------ALLRPGRFDEV 155
|
|
| ruvB |
TIGR00635 |
Holliday junction DNA helicase, RuvB subunit; All proteins in this family for which functions ... |
16-66 |
1.94e-05 |
|
Holliday junction DNA helicase, RuvB subunit; All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129721 [Multi-domain] Cd Length: 305 Bit Score: 45.75 E-value: 1.94e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1491180861 16 KKLDDIVDQEEVIQGLKNLLKG--DIKEMP-HLLFAGPPGTGKTTTALALAREI 66
Cdd:TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAakMRQEALdHLLLYGPPGLGKTTLAHIIANEM 54
|
|
| RepA |
COG3598 |
RecA-family ATPase [Replication, recombination and repair]; |
46-156 |
2.53e-05 |
|
RecA-family ATPase [Replication, recombination and repair];
Pssm-ID: 442817 [Multi-domain] Cd Length: 313 Bit Score: 45.28 E-value: 2.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 46 LFAGPPGTGKTTTALALAREI-YGGQWRDY------VLELNASDERGinVIRERVK-IFAQYFTPSEKAPFKIVILDEA- 116
Cdd:COG3598 17 LLAGPPGTGKSFLALQLAAAVaAGGPWLGRrvppgkVLYLAAEDDRG--ELRRRLKaLGADLGLPFADLDGRLRLLSLAg 94
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1491180861 117 DMMTSEAQTALRRImeinARVTRFILIcnyitrIISPIQS 156
Cdd:COG3598 95 DLDDTDDLEALERA----IEEEGPDLV------VIDPLAR 124
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
44-143 |
3.95e-05 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 42.71 E-value: 3.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 44 HLLFAGPPGTGKTTTALALAREIygGQWRDYVLELNASDERGINVIRERVKIFAQ---YFTPSEKAPFK----------- 109
Cdd:pfam13401 7 ILVLTGESGTGKTTLLRRLLEQL--PEVRDSVVFVDLPSGTSPKDLLRALLRALGlplSGRLSKEELLAalqqlllalav 84
|
90 100 110
....*....|....*....|....*....|....*.
gi 1491180861 110 --IVILDEADMMTSEAQTALRRIMEINARVTRFILI 143
Cdd:pfam13401 85 avVLIIDEAQHLSLEALEELRDLLNLSSKLLQLILV 120
|
|
| COG2842 |
COG2842 |
Bacteriophage DNA transposition protein, AAA+ family ATPase [Mobilome: prophages, transposons]; ... |
46-232 |
4.37e-05 |
|
Bacteriophage DNA transposition protein, AAA+ family ATPase [Mobilome: prophages, transposons];
Pssm-ID: 442090 [Multi-domain] Cd Length: 254 Bit Score: 44.17 E-value: 4.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 46 LFAGPPGTGKTTTALALARE----IY---GGQWRDYVL------ELNASDERG-INVIRERV-KIFAQYFTPsekapfki 110
Cdd:COG2842 54 VVYGESGVGKTTAAREYANRnpnvIYvtaSPSWTSKELleelaeELGIPAPPGtIADLRDRIlERLAGTGRL-------- 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 111 VILDEADMMTSEAQTALRRIMEInARVTrFILICNYitRIISPIQSRTAIF-------RFKRLPKEGAIQYLKMICDSEg 183
Cdd:COG2842 126 LIIDEADHLKPKALEELRDIHDE-TGVG-VVLIGME--RLPAKLKRYEQLYsrigfwvEFKPLSLEDVRALAEAWGELT- 200
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1491180861 184 vecSPDVLDKIYEASLGDLR---KAINLLQSVSTVTGGKP----TVKDVESIVGKA 232
Cdd:COG2842 201 ---DPDLLELLHRITRGNLRrldRTLRLAARAAKRNGLTKitldHVRAAALMLGEG 253
|
|
| RecA-like_ClpB_Hsp104-like |
cd19499 |
Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and ... |
45-147 |
4.49e-05 |
|
Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and eukaryotic Heat shock protein 104 (Hsp104) are ATP-dependent molecular chaperones and essential proteins of the heat-shock response. ClpB/Hsp104 ATPases, in concert with the DnaK/Hsp70 chaperone system, disaggregate and reactivate aggregated proteins. This RecA-like_ClpB_Hsp104_like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410907 [Multi-domain] Cd Length: 178 Bit Score: 43.32 E-value: 4.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 45 LLFAGPPGTGKTTTALALAREIYGG------------QWRDYVLELNAS-------DERGinVIRERVKifaqyftpseK 105
Cdd:cd19499 44 FLFLGPTGVGKTELAKALAELLFGDednliridmseyMEKHSVSRLIGAppgyvgyTEGG--QLTEAVR----------R 111
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1491180861 106 APFKIVILDEADMMTSEAQTALRRIM-----------EINARVTRFILICNYI 147
Cdd:cd19499 112 KPYSVVLLDEIEKAHPDVQNLLLQVLddgrltdshgrTVDFKNTIIIMTSNHF 164
|
|
| PRK07471 |
PRK07471 |
DNA polymerase III subunit delta'; Validated |
42-209 |
5.81e-05 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236022 [Multi-domain] Cd Length: 365 Bit Score: 44.25 E-value: 5.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 42 MPH-LLFAGPPGTGKTTTALALAR--------EIYGGQWRDYVLELNASD-----------------ERGIN-------- 87
Cdd:PRK07471 40 LHHaWLIGGPQGIGKATLAYRMARfllatpppGGDGAVPPPTSLAIDPDHpvarriaagahgglltlERSWNekgkrlrt 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 88 VIR-ERVKIFAQYF--TPSEKApFKIVILDEADMMTSEAQTALRRIMEINARVTRFILICNYITRIISPIQSRTAIFRFK 164
Cdd:PRK07471 120 VITvDEVRELISFFglTAAEGG-WRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLR 198
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1491180861 165 RLPKEGAIQYLKmicdSEGVECSPDVLDKIYEASLGDLRKAINLL 209
Cdd:PRK07471 199 PLAPEDVIDALA----AAGPDLPDDPRAALAALAEGSVGRALRLA 239
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
44-171 |
1.12e-04 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 41.51 E-value: 1.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 44 HLLFAGPPGTGKTTTALALAREIYGGQWRDYVL--ELNASDERGINVIRERVKifaqYFTPSEKAPF----KIVILDEAD 117
Cdd:pfam07728 1 GVLLVGPPGTGKTELAERLAAALSNRPVFYVQLtrDTTEEDLFGRRNIDPGGA----SWVDGPLVRAaregEIAVLDEIN 76
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1491180861 118 MMTSEAQTALRRIMEinarvTRFILICNYITRIISPIQSRTAIFRFKRLPKEGA 171
Cdd:pfam07728 77 RANPDVLNSLLSLLD-----ERRLLLPDGGELVKAAPDGFRLIATMNPLDRGLN 125
|
|
| HLD_clamp |
cd18133 |
helical lid domain of clamp loader-like AAA+ proteins; Clamp loader complexes are multisubunit ... |
166-229 |
1.25e-04 |
|
helical lid domain of clamp loader-like AAA+ proteins; Clamp loader complexes are multisubunit complexes that play an important role in DNA replication. They open sliding clamps for assembly and close them around DNA, specifically targeting them to sites where DNA synthesis is initiated and orienting them correctly for replication. The subunits belong to the clamp loader clade of AAA+ superfamily.
Pssm-ID: 350838 [Multi-domain] Cd Length: 65 Bit Score: 39.38 E-value: 1.25e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1491180861 166 LPKEGAIQYLKMICDSEGVECSPDVLDKIYEASLGDLRKAINLLQSVS-TVTGGKPTVKDVESIV 229
Cdd:cd18133 1 LDQEQLKRRLAAIAEQEKLKLDDAALQALAYISEGDLRKALNALQRAAaLGDDGKISLDRVYQAV 65
|
|
| DEXXQc_Mov10L1 |
cd18078 |
DEXXQ-box helicase domain of Mov10L1; Moloney leukemia virus 10-like protein 1 (Mov10L1) binds ... |
32-58 |
1.91e-04 |
|
DEXXQ-box helicase domain of Mov10L1; Moloney leukemia virus 10-like protein 1 (Mov10L1) binds Piwi-interacting RNA (piRNA) precursors to initiate piRNA processing. Mov10L1 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350836 [Multi-domain] Cd Length: 230 Bit Score: 41.97 E-value: 1.91e-04
10 20
....*....|....*....|....*..
gi 1491180861 32 KNLLKGDIKEMPHLLFaGPPGTGKTTT 58
Cdd:cd18078 11 KRILGGECRPLPYILF-GPPGTGKTVT 36
|
|
| DEXXQc_Upf1-like |
cd17934 |
DEXXQ-box helicase domain of Upf1-like helicase; The Upf1-like helicase family includes UPF1, ... |
49-143 |
2.50e-04 |
|
DEXXQ-box helicase domain of Upf1-like helicase; The Upf1-like helicase family includes UPF1, HELZ, Mov10L1, Aquarius, IGHMBP2 (SMUBP2), coronavirus Nsp13, and similar proteins. They belong to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 438708 [Multi-domain] Cd Length: 121 Bit Score: 40.30 E-value: 2.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 49 GPPGTGKTTTALALAREIyggqwrdyvlelnASDERGinvirERVKIFAQyftpSEKA--PFKIVILDEADMMTsEAQTA 126
Cdd:cd17934 6 GPPGTGKTTTIAAIVLQL-------------LKGLRG-----KRVLVTAQ----SNVAvdNVDVVIIDEASQIT-EPELL 62
|
90
....*....|....*..
gi 1491180861 127 LRRImeinaRVTRFILI 143
Cdd:cd17934 63 IALI-----RAKKVVLV 74
|
|
| AAA_28 |
pfam13521 |
AAA domain; |
47-95 |
4.15e-04 |
|
AAA domain;
Pssm-ID: 433278 [Multi-domain] Cd Length: 164 Bit Score: 40.33 E-value: 4.15e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1491180861 47 FAGPPGTGKTTTALALArEIYGGQW-----RDYVLELNASDERGINVIRERVKI 95
Cdd:pfam13521 4 ITGGPSTGKTTLAEALA-ARFGYPVvpeaaREILEELGADGGDALPWVEDLLAF 56
|
|
| MoxR |
COG0714 |
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway ... |
21-66 |
5.37e-04 |
|
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis
Pssm-ID: 440478 [Multi-domain] Cd Length: 292 Bit Score: 40.92 E-value: 5.37e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 1491180861 21 IVDQEEVIQ----GLknLLKGdikempHLLFAGPPGTGKTTTALALAREI 66
Cdd:COG0714 14 YVGQEELIElvliAL--LAGG------HLLLEGVPGVGKTTLAKALARAL 55
|
|
| AAA_30 |
pfam13604 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
49-137 |
8.99e-04 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. There is a Walker A and Walker B.
Pssm-ID: 433343 [Multi-domain] Cd Length: 191 Bit Score: 39.85 E-value: 8.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 49 GPPGTGKtTTALALAREIYGGQwrDYVLELNASDERGINVIRERVKIFA--------QYFTPSEKAPFKIVILDEADMM- 119
Cdd:pfam13604 25 GPAGTGK-TTALKALREAWEAA--GYRVIGLAPTGRAAKVLGEELGIPAdtiakllhRLGGRAGLDPGTLLIVDEAGMVg 101
|
90
....*....|....*...
gi 1491180861 120 TSEAQTALRRIMEINARV 137
Cdd:pfam13604 102 TRQMARLLKLAEDAGARV 119
|
|
| AAA_24 |
pfam13479 |
AAA domain; This AAA domain is found in a wide variety of presumed phage proteins. |
45-119 |
1.03e-03 |
|
AAA domain; This AAA domain is found in a wide variety of presumed phage proteins.
Pssm-ID: 433243 Cd Length: 199 Bit Score: 39.62 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 45 LLFAGPPGTGKTTTALALAREIY----GGqwrdyvleLNASDERGINVIRERVKI-----FAQYFTPSEKAPFKIVILDE 115
Cdd:pfam13479 5 ILIYGPSGIGKTTFAKTLPKPLFldteKG--------SKALDGDRFPDIVIRDSWqdfldAIDELTAAELADYKTIVIDT 76
|
....
gi 1491180861 116 ADMM 119
Cdd:pfam13479 77 VDWL 80
|
|
| DEXSc_RecD-like |
cd17933 |
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1. ... |
49-143 |
1.56e-03 |
|
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350691 [Multi-domain] Cd Length: 155 Bit Score: 38.30 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 49 GPPGTGKTTTALALareiyggqwrdyvleLNASDERGINVI------------RERVKIFAQ---------------YFT 101
Cdd:cd17933 19 GGAGTGKTTTLKAL---------------LAALEAEGKRVVlaaptgkaakrlSESTGIEAStihrllginpggggfYYN 83
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1491180861 102 PSEKAPFKIVILDEADMMTSEAQTALRRIMEINARVtrfILI 143
Cdd:cd17933 84 EENPLDADLLIVDEASMVDTRLMAALLSAIPAGARL---ILV 122
|
|
| TIP49 |
COG1224 |
DNA helicase TIP49, TBP-interacting protein [Transcription]; |
46-66 |
1.66e-03 |
|
DNA helicase TIP49, TBP-interacting protein [Transcription];
Pssm-ID: 440837 [Multi-domain] Cd Length: 452 Bit Score: 39.95 E-value: 1.66e-03
|
| RecA-like_CDC48_NLV2_r1-like |
cd19503 |
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and ... |
45-65 |
1.76e-03 |
|
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and p97 or VCP metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the first of the two ATPase domains. This subfamily also includes the first of the two ATPase domains of NVL (nuclear VCP-like protein) 2, an isoform of NVL mainly present in the nucleolus, which is involved in ribosome biogenesis, in telomerase assembly and the regulation of telomerase activity, and in pre-rRNA processing. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410911 [Multi-domain] Cd Length: 165 Bit Score: 38.43 E-value: 1.76e-03
|
| SSL2 |
COG1061 |
Superfamily II DNA or RNA helicase [Transcription, Replication, recombination, and repair]; |
24-116 |
1.95e-03 |
|
Superfamily II DNA or RNA helicase [Transcription, Replication, recombination, and repair];
Pssm-ID: 440681 [Multi-domain] Cd Length: 566 Bit Score: 40.01 E-value: 1.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 24 QEEVIQGLKNLLKgdiKEMPHLLFAGPPGTGKTTTALALAREIYGG--------------QWRDYVLELNA-------SD 82
Cdd:COG1061 85 QQEALEALLAALE---RGGGRGLVVAPTGTGKTVLALALAAELLRGkrvlvlvprrelleQWAEELRRFLGdplagggKK 161
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1491180861 83 ERGINVI---------RERVKIFAQYFTpsekapfkIVILDEA 116
Cdd:COG1061 162 DSDAPITvatyqslarRAHLDELGDRFG--------LVIIDEA 196
|
|
| AAA_assoc_2 |
pfam16193 |
AAA C-terminal domain; AAA_assoc_2 is found at the C-terminus of a relatively small set of AAA ... |
184-232 |
1.99e-03 |
|
AAA C-terminal domain; AAA_assoc_2 is found at the C-terminus of a relatively small set of AAA domains in proteins ranging from archaeal to fungi, plants and mammals.
Pssm-ID: 465057 Cd Length: 81 Bit Score: 36.68 E-value: 1.99e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1491180861 184 VECSPDVLDKIYEASLGDLRKAINLL----QSVSTVTGGKP-TVKDVESIVGKA 232
Cdd:pfam16193 5 IELDDEALEALAELADGDARRALNALelavLSTPPDDGGIHiTLEILEEALQRK 58
|
|
| RPT1 |
COG1222 |
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ... |
9-65 |
2.17e-03 |
|
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440835 [Multi-domain] Cd Length: 326 Bit Score: 39.22 E-value: 2.17e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1491180861 9 WIEKYRPKKLDDIVDQEEVIQGLKN-----LLKGDI-----KEMPH-LLFAGPPGTGKTTTALALARE 65
Cdd:COG1222 68 VPAESPDVTFDDIGGLDEQIEEIREavelpLKNPELfrkygIEPPKgVLLYGPPGTGKTLLAKAVAGE 135
|
|
| PRK05917 |
PRK05917 |
DNA polymerase III subunit delta'; Validated |
99-175 |
2.29e-03 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 102059 [Multi-domain] Cd Length: 290 Bit Score: 39.01 E-value: 2.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 99 YFTPSEkAPFKIVILDEADMMTSEAQTALRRIMEINARVTRFILICNYITRIISPIQSRTAIFRF----KRLPKEGAIQY 174
Cdd:PRK05917 88 WIHPYE-SPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIpmeeKTLVSKEDIAY 166
|
.
gi 1491180861 175 L 175
Cdd:PRK05917 167 L 167
|
|
| DEXXQc_Helz-like |
cd18038 |
DEXXQ/H-box helicase domain of Helz-like helicase; This subfamily contains HELZ, Mov10L1, and ... |
25-58 |
2.56e-03 |
|
DEXXQ/H-box helicase domain of Helz-like helicase; This subfamily contains HELZ, Mov10L1, and similar proteins. Helicase with zinc finger (HELZ) acts as a helicase that plays a role in RNA metabolism during development. Moloney leukemia virus 10-like protein 1 (Mov10L1) binds Piwi-interacting RNA (piRNA) precursors to initiate piRNA processing. All are members of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350796 [Multi-domain] Cd Length: 229 Bit Score: 38.75 E-value: 2.56e-03
10 20 30
....*....|....*....|....*....|....
gi 1491180861 25 EEVIQGLKNLLKGDIKEMPHLLFaGPPGTGKTTT 58
Cdd:cd18038 4 DEQKLAVRNIVTGTSRPPPYIIF-GPPGTGKTVT 36
|
|
| RecA-like_VPS4-like |
cd19509 |
ATPase domain of VPS4, ATAD1, K, KTNA1, Spastin, FIGL-1 and similar ATPase domains; This ... |
21-122 |
2.85e-03 |
|
ATPase domain of VPS4, ATAD1, K, KTNA1, Spastin, FIGL-1 and similar ATPase domains; This subfamily includes the ATPase domains of vacuolar protein sorting-associated protein 4 (VPS4), ATPase family AAA domain-containing protein 1 (ATAD1, also known as Thorase), Katanin p60 ATPase-containing subunit A1 (KTNA1), Spastin, and Fidgetin-Like 1 (FIGL-1). This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410917 [Multi-domain] Cd Length: 163 Bit Score: 37.72 E-value: 2.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 21 IVDQEEVIQGLK----------NLLKGDIKEMPHLLFAGPPGTGKTTTALALAREIyggqwRDYVLELNASDE----RGi 86
Cdd:cd19509 1 IAGLDDAKEALKeavilpslrpDLFPGLRGPPRGILLYGPPGTGKTLLARAVASES-----GSTFFSISASSLvskwVG- 74
|
90 100 110
....*....|....*....|....*....|....*..
gi 1491180861 87 nvirERVKIFAQYF-TPSEKAPfKIVILDEADMMTSE 122
Cdd:cd19509 75 ----ESEKIVRALFaLARELQP-SIIFIDEIDSLLSE 106
|
|
| Kti12 |
COG4088 |
tRNA uridine 5-carbamoylmethylation protein Kti12 (Killer toxin insensitivity protein) ... |
45-83 |
3.06e-03 |
|
tRNA uridine 5-carbamoylmethylation protein Kti12 (Killer toxin insensitivity protein) [Translation, ribosomal structure and biogenesis, Defense mechanisms];
Pssm-ID: 443264 [Multi-domain] Cd Length: 179 Bit Score: 38.17 E-value: 3.06e-03
10 20 30
....*....|....*....|....*....|....*....
gi 1491180861 45 LLFAGPPGTGKTTTALALAREIYGGQWRDYVLElnaSDE 83
Cdd:COG4088 7 LILTGPPGSGKTTFAKALAQRLYAEGIAVALLH---SDD 42
|
|
| AAA_2 |
pfam07724 |
AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected ... |
46-138 |
3.39e-03 |
|
AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400187 [Multi-domain] Cd Length: 168 Bit Score: 37.56 E-value: 3.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1491180861 46 LFAGPPGTGKTTTALALAREIYGGqwRDYVLELNAS---------------------DERGINVIRERVKifaqyftpse 104
Cdd:pfam07724 7 LFLGPTGVGKTELAKALAELLFGD--ERALIRIDMSeymeehsvsrligappgyvgyEEGGQLTEAVRRK---------- 74
|
90 100 110
....*....|....*....|....*....|....
gi 1491180861 105 kaPFKIVILDEADMMTSEAQTALRRIMEiNARVT 138
Cdd:pfam07724 75 --PYSIVLIDEIEKAHPGVQNDLLQILE-GGTLT 105
|
|
| McrB |
COG1401 |
5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB ... |
4-70 |
3.53e-03 |
|
5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB [Defense mechanisms];
Pssm-ID: 441011 [Multi-domain] Cd Length: 477 Bit Score: 38.98 E-value: 3.53e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1491180861 4 RLELLWIEKYRPKKLDDIVDQEEVIQGLKNLlkgdiKEMPHLLFAGPPGTGKTTTALALAREIYGGQ 70
Cdd:COG1401 188 YSEDLESEDDYLKDLLREKFEETLEAFLAAL-----KTKKNVILAGPPGTGKTYLARRLAEALGGED 249
|
|
| TIP49 |
pfam06068 |
TIP49 P-loop domain; This family consists of the C-terminal region of several eukaryotic and ... |
45-66 |
3.67e-03 |
|
TIP49 P-loop domain; This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities.TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases.
Pssm-ID: 399217 [Multi-domain] Cd Length: 347 Bit Score: 38.83 E-value: 3.67e-03
|
| COG0645 |
COG0645 |
Predicted kinase, contains AAA domain [General function prediction only]; |
45-66 |
7.36e-03 |
|
Predicted kinase, contains AAA domain [General function prediction only];
Pssm-ID: 440410 [Multi-domain] Cd Length: 164 Bit Score: 36.81 E-value: 7.36e-03
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
46-69 |
8.34e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 37.75 E-value: 8.34e-03
10 20
....*....|....*....|....
gi 1491180861 46 LFAGPPGTGKTTTALALAREIYGG 69
Cdd:COG0542 583 LFLGPTGVGKTELAKALAEFLFGD 606
|
|
| |
