|
Name |
Accession |
Description |
Interval |
E-value |
| PRK08451 |
PRK08451 |
DNA polymerase III subunits gamma and tau; Validated |
1-590 |
0e+00 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236267 [Multi-domain] Cd Length: 535 Bit Score: 898.24 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 1 MQVLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPKAVPCDTCTQCQSA 80
Cdd:PRK08451 1 MQALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 81 LNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKL 160
Cdd:PRK08451 81 LENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 161 PATILSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKVAEMLG 240
Cdd:PRK08451 161 PATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYCKNAITESKVADMLG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 241 AIDRSVLEDFFQSLINQDEARLKERYAILENYETEGVLEEMMLFLKAKLLSPDS-YSILLIERFFKIIMSSLSLLKEGAN 319
Cdd:PRK08451 241 LLDPSKLEDFFQAILNQDKEKLFELLKELEDYEAEMVLDEMMLFLKEKFLSKDSeFSILLYERFFRILSSAKSLLKEGAD 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 320 ASFVLLLLKMKFKEALKLKALDDAILELEQTPFNqnPSISYNAPKQEPKSTEKREqaeriegtekreklekrenaetpqt 399
Cdd:PRK08451 321 DGFVLLLMLFKMKEALKLKEIDDAIEELEQEKTT--AIIPLNTPAPIIPNTEKEE------------------------- 373
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 400 pmlsAKDRIFHNLFKQVQTLVYERNYELGAVFEKNIRFIDFDSQTktLTWESLATDKDKELLRERFKIVKSIVDGVFGKG 479
Cdd:PRK08451 374 ----AKDRIFKNLFEQLLDKIYDRNYELGECFEKNIRFIDFDSNT--LTWESNAQGEDKELLRKGFKIIKEIVDEVFGKG 447
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 480 ENIKIalknHSENKSAREETKEIKDFKISSLREKILPQPTTETTAEMKEKEtkeavkkeikekeikenDTKEIQETQPKE 559
Cdd:PRK08451 448 AKIKI----QKALKSAENPLQSLKEFKPSNEKKKIDTESTAEMLEEEAKKD-----------------DEEVQETQLKEA 506
|
570 580 590
....*....|....*....|....*....|.
gi 1489553191 560 SPtaLQEFMANHSELIEEIKSEFEIKSVELL 590
Cdd:PRK08451 507 TE--LQEFMINNEDLIEEAKELFGIKSIELL 535
|
|
| dnaX_nterm |
TIGR02397 |
DNA polymerase III, subunit gamma and tau; This model represents the well-conserved first ~ ... |
1-350 |
1.99e-141 |
|
DNA polymerase III, subunit gamma and tau; This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274111 [Multi-domain] Cd Length: 355 Bit Score: 413.89 E-value: 1.99e-141
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 1 MQVLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPKAVPCDTCTQCQSA 80
Cdd:TIGR02397 1 YQVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 81 LNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKL 160
Cdd:TIGR02397 81 NSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 161 PATILSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKVAEMLG 240
Cdd:TIGR02397 161 PATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGNGKITYEDVNELLG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 241 AIDRSVLEDFFQSLINQD--EARLKERYAILENYETEGVLEEMMLFLKAKLLSPDSYSILL-IERFFKIIMSSLSLLKeg 317
Cdd:TIGR02397 241 LVDDEKLIELLEAILNKDtaEALKILDEILESGVDPEKFLEDLIEILRDLLLIKKTPSNLLaVLESEQEFLKELALKL-- 318
|
330 340 350
....*....|....*....|....*....|...
gi 1489553191 318 aNASFVLLLLKMKFKEALKLKALDDAILELEQT 350
Cdd:TIGR02397 319 -SLEFLLRLLDILLEALKDLRFSNDPRIWLEMT 350
|
|
| DnaX |
COG2812 |
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair]; |
10-329 |
5.26e-121 |
|
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];
Pssm-ID: 442061 [Multi-domain] Cd Length: 340 Bit Score: 361.05 E-value: 5.26e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 10 PKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPKAVPCDTCTQCQSALNNHHIDII 89
Cdd:COG2812 6 PQTFDDVVGQEHVVRTLKNALASGRLAHAYLFTGPRGVGKTTLARILAKALNCENGPTGEPCGECESCRAIAAGSHPDVI 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 90 EMDG-ASNRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRT 168
Cdd:COG2812 86 EIDAeASNIGVDDIRELIEKVSYAPVEGRYKVYIIDEAHMLTTEAFNALLKTLEEPPPHVVFILATTEPQKLLPTILSRC 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 169 QHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLEQAINYCD-----------NAITESKVAE 237
Cdd:COG2812 166 QRFDFRRLPPEEIAEHLAKIAEREGIEIEPEALALIARAADGSMRDALSLLDQAIAFGLldrrellldllEALLAGDVAA 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 238 MLGAIDRSV-----LEDFFQSLIN--QDEARLKERyAILENYETEGVLEEMMLFlkAKLLSPDSysillIERFFKIIMSS 310
Cdd:COG2812 246 LLALAEELAkrgrdLKRFLDDLLSllRDLLLLKLG-PDAELLVNEDERERLQEL--ARRLSPER-----LLRAIQILLEA 317
|
330 340
....*....|....*....|.
gi 1489553191 311 LSLLKEGANASFVL--LLLKM 329
Cdd:COG2812 318 RRELERNVNPRLALemLLLRL 338
|
|
| PRK14965 |
PRK14965 |
DNA polymerase III subunits gamma and tau; Provisional |
3-262 |
7.65e-111 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 343.26 E-value: 7.65e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 3 VLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPKAVPCDTCTQCQSALN 82
Cdd:PRK14965 5 VLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 83 NHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPA 162
Cdd:PRK14965 85 GRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 163 TILSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKVAEMLGAI 242
Cdd:PRK14965 165 TILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDVAELLGVV 244
|
250 260
....*....|....*....|
gi 1489553191 243 DRSVLEDFFQSLINQDEARL 262
Cdd:PRK14965 245 DRRLLLDISAAVFGRDTRAL 264
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
2-281 |
1.47e-110 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 344.54 E-value: 1.47e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 2 QVLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPKAVPCDTCTQCQSAL 81
Cdd:PRK07994 4 QVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 82 NNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLP 161
Cdd:PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 162 ATILSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKVAEMLGA 241
Cdd:PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIASGNGQVTTDDVSAMLGT 243
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1489553191 242 IDRSVLEDFFQSLINQDEARLKE--RYAILENYETEGVLEEM 281
Cdd:PRK07994 244 LDDDQALSLLEALVEGDGERVMAliNQLAERGPDWEGLLVEL 285
|
|
| PRK05563 |
PRK05563 |
DNA polymerase III subunits gamma and tau; Validated |
1-390 |
3.09e-110 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235505 [Multi-domain] Cd Length: 559 Bit Score: 341.08 E-value: 3.09e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 1 MQVLAL--KYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPKAVPCDTCTQCQ 78
Cdd:PRK05563 1 MMYQALyrKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 79 SALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDAL 158
Cdd:PRK05563 81 AITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 159 KLPATILSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKVAEM 238
Cdd:PRK05563 161 KIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFGDGKVTYEDALEV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 239 LGAIDRSVLEDFFQSLINQDEARLkerYAILENYETEG-----VLEEMMLFLKAKLL---SPDSYSILL----------- 299
Cdd:PRK05563 241 TGSVSQEALDDLVDAIVEGDVAKA---LKILEELLDEGkdpnrFIEDLIYYLRDLLLvktSPELEILDEstendelfkel 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 300 -----IERFFKII---MSSLSLLKEGANASFVL--LLLKM-----------KFKEALK--LKALDDAILELEQTPFNQNP 356
Cdd:PRK05563 318 sekldIERLYRMIdilNDAQQQIKWTNQPRIYLevALVKLceqaaaspeydTELEVLLqrVEQLEQELKQLKAQPVGVAP 397
|
410 420 430
....*....|....*....|....*....|....*...
gi 1489553191 357 SISYNAPKQEPKSTEK----REQAERIEGTEKREKLEK 390
Cdd:PRK05563 398 EQKEKKKEKKKNKKKKykvpRGKIYKVLKEATRQDLEL 435
|
|
| PRK14969 |
PRK14969 |
DNA polymerase III subunits gamma and tau; Provisional |
2-262 |
4.07e-107 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237873 [Multi-domain] Cd Length: 527 Bit Score: 332.10 E-value: 4.07e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 2 QVLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPKAVPCDTCTQCQSAL 81
Cdd:PRK14969 4 QVLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEID 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 82 NNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLP 161
Cdd:PRK14969 84 SGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIP 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 162 ATILSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKVAEMLGA 241
Cdd:PRK14969 164 VTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGGGTVNESEVRAMLGA 243
|
250 260
....*....|....*....|.
gi 1489553191 242 IDRSVLEDFFQSLINQDEARL 262
Cdd:PRK14969 244 IDQDYLFALLEALLAQDGAAL 264
|
|
| PRK09111 |
PRK09111 |
DNA polymerase III subunits gamma and tau; Validated |
2-267 |
7.28e-104 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236382 [Multi-domain] Cd Length: 598 Bit Score: 325.70 E-value: 7.28e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 2 QVLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCE-----EGPKAVPCDTCTQ 76
Cdd:PRK09111 12 RVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEgpdgdGGPTIDLCGVGEH 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 77 CQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTD 156
Cdd:PRK09111 92 CQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTE 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 157 ALKLPATILSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKVA 236
Cdd:PRK09111 172 IRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIAHGAGEVTAEAVR 251
|
250 260 270
....*....|....*....|....*....|....*
gi 1489553191 237 EMLGAIDRSVLEDFFQSLINQDEAR----LKERYA 267
Cdd:PRK09111 252 DMLGLADRARVIDLFEALMRGDVAAalaeFRAQYD 286
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
2-281 |
3.01e-102 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 322.43 E-value: 3.01e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 2 QVLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEeGP------KAVPCDTCT 75
Cdd:PRK14951 4 LVLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQ-GPdgqggiTATPCGVCQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 76 QCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATT 155
Cdd:PRK14951 83 ACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATT 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 156 DALKLPATILSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKV 235
Cdd:PRK14951 163 DPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFGSGQLQEAAV 242
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1489553191 236 AEMLGAIDRSVLEDFFQSLINQDEARLKERYAIL--ENYETEGVLEEM 281
Cdd:PRK14951 243 RQMLGSVDRSHVFRLIDALAQGDGRTVVETADELrlNGLSAASTLEEM 290
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
2-262 |
7.94e-100 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 318.36 E-value: 7.94e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 2 QVLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMC-----EEGPKAVPCDTCTQ 76
Cdd:PRK12323 4 QVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCtgadgEGGITAQPCGQCRA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 77 CQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTD 156
Cdd:PRK12323 84 CTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTD 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 157 ALKLPATILSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKVA 236
Cdd:PRK12323 164 PQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAYSAGNVSEEAVR 243
|
250 260
....*....|....*....|....*.
gi 1489553191 237 EMLGAIDRSVLEDFFQSLINQDEARL 262
Cdd:PRK12323 244 GMLGAIDQSYLVRLLDALAAEDGAAL 269
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
2-247 |
2.11e-97 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 315.25 E-value: 2.11e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 2 QVLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPKAVPCDTCTQCQSAL 81
Cdd:PRK07003 4 QVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREID 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 82 NNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLP 161
Cdd:PRK07003 84 EGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIP 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 162 ATILSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKVAEMLGA 241
Cdd:PRK07003 164 VTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGA 243
|
....*.
gi 1489553191 242 IDRSVL 247
Cdd:PRK07003 244 LDQTYM 249
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
2-407 |
7.43e-96 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 308.18 E-value: 7.43e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 2 QVLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPKAVPCDTCTQCQSAL 81
Cdd:PRK08691 4 QVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQID 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 82 NNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLP 161
Cdd:PRK08691 84 AGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVP 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 162 ATILSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKVAEMLGA 241
Cdd:PRK08691 164 VTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQMIGA 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 242 IDRSVLEDFFQSLINQDEA-------RLKERYAILENY--ETEGVLEEMMLF--LKAKLLSPDSYSILL----------- 299
Cdd:PRK08691 244 VDKQYLYELLTGIINQDGAallakaqEMAACAVGFDNAlgELAILLQQLALIqaVPSALAHDDPDSDILhrlaqtisgeq 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 300 IERFFKIIM---SSLSLLKEgANASFVLLLLKMkfkealklkalddaileLEQTPFNQnPSISYNAPKQEPKSTEKREQA 376
Cdd:PRK08691 324 IQLYYQIAVhgkRDLSLAPD-EYAGFMMTLLRM-----------------LAFAPLAA-ASCDANAVIENTELQSPSAQT 384
|
410 420 430
....*....|....*....|....*....|.
gi 1489553191 377 ERIEGTEKreKLEKRENAETPQTPMLSAKDR 407
Cdd:PRK08691 385 AEKETAAK--KPQPRPEAETAQTPVQTASAA 413
|
|
| PRK06647 |
PRK06647 |
DNA polymerase III subunits gamma and tau; Validated |
2-283 |
4.74e-89 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235845 [Multi-domain] Cd Length: 563 Bit Score: 286.28 E-value: 4.74e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 2 QVLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPKAVPCDTCTQCQSAL 81
Cdd:PRK06647 4 RGTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSID 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 82 NNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLP 161
Cdd:PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 162 ATILSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKVAEMLGA 241
Cdd:PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDSDITLEQIRSKMGL 243
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1489553191 242 IDRSVLEDFFQSLINQDearLKERYAILENYETEGVLEEMML 283
Cdd:PRK06647 244 TGDEFLEKLASSILNED---AKELLCVLDSVFLSGVSVEQFL 282
|
|
| PRK14953 |
PRK14953 |
DNA polymerase III subunits gamma and tau; Provisional |
5-314 |
5.94e-89 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237867 [Multi-domain] Cd Length: 486 Bit Score: 283.64 E-value: 5.94e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 5 ALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPKAVPCDTCTQCQSALNNH 84
Cdd:PRK14953 7 ARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 85 HIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATI 164
Cdd:PRK14953 87 FPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTI 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 165 LSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKVAEMLGAIDR 244
Cdd:PRK14953 167 LSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGEGKVTIKVVEEFLGIVSQ 246
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1489553191 245 SVLEDFFQSLINQDearLKERYAILENYETEG---------VLEEMMLFLKAKLLSpDSYSILLIERFFKIIMSSLSLL 314
Cdd:PRK14953 247 ESVRKFLNLLLESD---VDEAIKFLRTLEEKGynlnkfwkqLEEEIRNILLNKSLK-NPEEVFQVEDFYRKLEKPLEAL 321
|
|
| PRK14948 |
PRK14948 |
DNA polymerase III subunit gamma/tau; |
4-271 |
1.31e-88 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 286.47 E-value: 1.31e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 4 LALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMC--EEGPKAVPCDTCTQCQ--- 78
Cdd:PRK14948 6 LHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNClnSDKPTPEPCGKCELCRaia 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 79 --SALnnhhiDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTD 156
Cdd:PRK14948 86 agNAL-----DVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 157 ALKLPATILSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLEQaINYCDNAITESKVA 236
Cdd:PRK14948 161 PQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQ-LSLLPGPITPEAVW 239
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1489553191 237 EMLGAIDRSVLEDFFQSLINQD-EA----------RLKERYAILEN 271
Cdd:PRK14948 240 DLLGAVPEQDLLNLLKALASNDpESlldscrqlldRGREPLAILQG 285
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
4-258 |
5.38e-88 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 285.42 E-value: 5.38e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 4 LALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPKAVPCDTCTQCQSALNN 83
Cdd:PRK14959 6 LTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 84 HHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPAT 163
Cdd:PRK14959 86 MHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVT 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 164 ILSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKVAEMLGAID 243
Cdd:PRK14959 166 IVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGARGVLGLAG 245
|
250
....*....|....*
gi 1489553191 244 RSVLEDFFQSLINQD 258
Cdd:PRK14959 246 QELFLRLMEALAAQD 260
|
|
| PRK14964 |
PRK14964 |
DNA polymerase III subunits gamma and tau; Provisional |
4-258 |
9.28e-88 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237870 [Multi-domain] Cd Length: 491 Bit Score: 280.52 E-value: 9.28e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 4 LALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPKAVPCDTCTQCQSALNN 83
Cdd:PRK14964 3 LALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNS 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 84 HHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPAT 163
Cdd:PRK14964 83 NHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVT 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 164 ILSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKVAEMLGAID 243
Cdd:PRK14964 163 IISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISEKSVRDLLGCVD 242
|
250
....*....|....*
gi 1489553191 244 RSVLEDFFQSLINQD 258
Cdd:PRK14964 243 KHILEDLVEAILLGD 257
|
|
| PRK07133 |
PRK07133 |
DNA polymerase III subunits gamma and tau; Validated |
1-525 |
1.31e-87 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235943 [Multi-domain] Cd Length: 725 Bit Score: 286.71 E-value: 1.31e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 1 MQVLAL--KYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEgpKAVPCDTCTQCQ 78
Cdd:PRK07133 3 MKYKALyrKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSH--KTDLLEPCQECI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 79 SALNNHhIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDAL 158
Cdd:PRK07133 81 ENVNNS-LDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVH 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 159 KLPATILSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKVAEM 238
Cdd:PRK07133 160 KIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKITLKNVEEL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 239 LGAIDRSVLEDFFQSLINQDearLKERYAILENYETEG------------VLEEMMLFLKAK---LLSPDSYSILL---- 299
Cdd:PRK07133 240 FGLVSNENLINLLNLLYSKD---IKEVLNILNQIKEQGidpelllislinLVKEFIIFNKTKdnsLLEYYSEEDLEklki 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 300 -IERFFKIIMSSLSLLKEGANASFVLLLLKMKFkeaLKLKALDDAILELEQTpfNQNPSISYNAPKQEPKSTEKREQAER 378
Cdd:PRK07133 317 dDDFAYKFIEILFDLLKDLKISDNPNDTLEILI---IKLLALSELEEEDENE--IKFKKIEENSIDNLDIKEKKIENEND 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 379 IEGTEKREKLEKRENAETpqtpmLSAKDRIFHNLFKQ-------VQTLVYERNYELGAVFEKNIRFIDFDSQTKTLTWES 451
Cdd:PRK07133 392 IEGKSDTKNLEEGFETKD-----NKNKNSSFINKTENiltnsplKDELLEKTTEIINIENPQEFEFGQIGNDIISTEIAQ 466
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 452 LATDKDK----ELLRERFKIVKSIVDGVFGKGENIKIAL------KNHSENKSAREETKEIKDFKISSLREKILPQPTTE 521
Cdd:PRK07133 467 LDENQNLidtgEFDLENNFSNSFNPENGNKIDENINETFdtstisANLSENKTNFAQSFNNKDTNLINSEIPIDLIKDTI 546
|
....
gi 1489553191 522 TTAE 525
Cdd:PRK07133 547 TINN 550
|
|
| PRK14960 |
PRK14960 |
DNA polymerase III subunit gamma/tau; |
2-264 |
1.59e-87 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237868 [Multi-domain] Cd Length: 702 Bit Score: 286.17 E-value: 1.59e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 2 QVLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPKAVPCDTCTQCQSAL 81
Cdd:PRK14960 3 QVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVN 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 82 NNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLP 161
Cdd:PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLP 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 162 ATILSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKVAEMLGA 241
Cdd:PRK14960 163 ITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLGL 242
|
250 260
....*....|....*....|...
gi 1489553191 242 IDRSVLEDFFQSLINQDEARLKE 264
Cdd:PRK14960 243 IDRTIIYDLILAVHQNQREKVSQ 265
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
2-258 |
6.13e-85 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 275.92 E-value: 6.13e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 2 QVLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEE-GPKAVPCDTCTQCQSA 80
Cdd:PRK14950 4 QVLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTnDPKGRPCGTCEMCRAI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 81 LNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKL 160
Cdd:PRK14950 84 AEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKV 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 161 PATILSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKVAEMLG 240
Cdd:PRK14950 164 PATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGGEISLSQVQSLLG 243
|
250
....*....|....*...
gi 1489553191 241 AIDRSVLEDFFQSLINQD 258
Cdd:PRK14950 244 ISGDEEVKALAEALLAKD 261
|
|
| PRK06305 |
PRK06305 |
DNA polymerase III subunits gamma and tau; Validated |
2-291 |
6.79e-84 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180523 [Multi-domain] Cd Length: 451 Bit Score: 269.34 E-value: 6.79e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 2 QVLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEE-GPKAVPCDTCTQCQSA 80
Cdd:PRK06305 5 QVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNpTEDQEPCNQCASCKEI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 81 LNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKL 160
Cdd:PRK06305 85 SSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 161 PATILSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKVAEMLG 240
Cdd:PRK06305 165 PGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPKSLDPDSVAKALG 244
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 241 AIDRsvledffQSLINQDEARLKERYA----ILENYETEGV-----LEEMMLFLKAKLLS 291
Cdd:PRK06305 245 LLSQ-------DSLYTLDEAITTQNYAqalePVTDAMNSGVapahfLHDLTLFFRNILLK 297
|
|
| PRK14962 |
PRK14962 |
DNA polymerase III subunits gamma and tau; Provisional |
1-388 |
1.04e-82 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237869 [Multi-domain] Cd Length: 472 Bit Score: 267.02 E-value: 1.04e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 1 MQVLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPKAVPCDTCTQCQSA 80
Cdd:PRK14962 1 MEALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 81 LNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKL 160
Cdd:PRK14962 81 DEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 161 PATILSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKVAEMLG 240
Cdd:PRK14962 161 PPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEALG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 241 AIDRSVLEDFFQSLINQDEAR----LKERYAILENYETegVLEEMMLFLKAKLLSPDSYSILLIERFFkiimssLSLLKE 316
Cdd:PRK14962 241 LIPIEVVRDYINAIFNGDVKRvftvLDDVYYSGKDYEV--LIQQAIEDLVEDLERERANDIIQVSRQL------LNILRE 312
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1489553191 317 GANASFVLLLLKMKFKEALKLKALDDaILELEQTPFNQNPSISYNAPKQEpKSTEKREQAERIEGTEKREKL 388
Cdd:PRK14962 313 IKFAEEKRLVCKLGSASIATRFSSPN-VQENDVEEKNDNSNVQQKEKKKE-ESKAKEEKQEDIEFEKRFKEL 382
|
|
| PRK14949 |
PRK14949 |
DNA polymerase III subunits gamma and tau; Provisional |
2-243 |
1.52e-81 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237863 [Multi-domain] Cd Length: 944 Bit Score: 275.07 E-value: 1.52e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 2 QVLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPKAVPCDTCTQCQSAL 81
Cdd:PRK14949 4 QVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 82 NNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLP 161
Cdd:PRK14949 84 QGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLP 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 162 ATILSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKVAEMLGA 241
Cdd:PRK14949 164 VTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAFGGGQVMLTQVQTMLGS 243
|
..
gi 1489553191 242 ID 243
Cdd:PRK14949 244 ID 245
|
|
| PRK14952 |
PRK14952 |
DNA polymerase III subunits gamma/tau; |
2-262 |
3.16e-80 |
|
DNA polymerase III subunits gamma/tau;
Pssm-ID: 237866 [Multi-domain] Cd Length: 584 Bit Score: 263.66 E-value: 3.16e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 2 QVLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPKAVPCDTCTQCQS-A 80
Cdd:PRK14952 1 MALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVAlA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 81 LN-NHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALK 159
Cdd:PRK14952 81 PNgPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 160 LPATILSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLEQAI-NYCDNAITESKVAEM 238
Cdd:PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLaGAADTHVTYQRALGL 240
|
250 260
....*....|....*....|....
gi 1489553191 239 LGAIDRSVLEDFFQSLINQDEARL 262
Cdd:PRK14952 241 LGATDVALIDDAVDALAADDAAAL 264
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
3-262 |
3.04e-78 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 263.77 E-value: 3.04e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 3 VLAL--KYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPKAVPCDTCTQCQS- 79
Cdd:PRK07764 2 ALALyrRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVAl 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 80 ALNNH-HIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDAL 158
Cdd:PRK07764 82 APGGPgSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPD 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 159 KLPATILSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLEQAINYC-DNAIT-ESKVA 236
Cdd:PRK07764 162 KVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLAGAgPEGVTyERAVA 241
|
250 260
....*....|....*....|....*.
gi 1489553191 237 eMLGAIDRSVLEDFFQSLINQDEARL 262
Cdd:PRK07764 242 -LLGVTDSALIDEAVDALAAGDGAAL 266
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
3-259 |
4.13e-78 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 258.94 E-value: 4.13e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 3 VLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEE-GPKAVPCDTCTQCQSAL 81
Cdd:PRK14971 6 VSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNlTADGEACNECESCVAFN 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 82 NNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLP 161
Cdd:PRK14971 86 EQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKIL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 162 ATILSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKVAEMLGA 241
Cdd:PRK14971 166 PTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGNITYKSVIENLNI 245
|
250 260
....*....|....*....|....*..
gi 1489553191 242 IDRSV---LEDFF------QSLINQDE 259
Cdd:PRK14971 246 LDYDYyfrLTDALlagkvsDSLLLFDE 272
|
|
| PRK06645 |
PRK06645 |
DNA polymerase III subunits gamma and tau; Validated |
3-312 |
1.54e-77 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180643 [Multi-domain] Cd Length: 507 Bit Score: 254.40 E-value: 1.54e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 3 VLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCE----EGPKAVPCDTCTQCQ 78
Cdd:PRK06645 10 PFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSalitENTTIKTCEQCTNCI 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 79 SALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDAL 158
Cdd:PRK06645 90 SFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQ 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 159 KLPATILSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLEQAINYC---DNAITESKV 235
Cdd:PRK06645 170 KIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMSaksDNIISPQVI 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 236 AEMLGAIDRSVLEDFFQSLINQDEAR----LKERYAILENYET--EGVLEEMMLFLKAKLLspDSYSILLIERFFKIIMS 309
Cdd:PRK06645 250 NQMLGLVDSSVIIEFVEYIIHRETEKainlINKLYGSSVNLEIfiESVSDFIAYLNKVKML--PNYSLPIYESFNDRTKS 327
|
...
gi 1489553191 310 SLS 312
Cdd:PRK06645 328 ILD 330
|
|
| PRK14955 |
PRK14955 |
DNA polymerase III subunits gamma and tau; Provisional |
2-302 |
3.52e-77 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184919 [Multi-domain] Cd Length: 397 Bit Score: 250.19 E-value: 3.52e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 2 QVLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCE---EGPKAV-----PCDT 73
Cdd:PRK14955 4 QVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQrmiDDADYLqevtePCGE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 74 CTQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLA 153
Cdd:PRK14955 84 CESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 154 TTDALKLPATILSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLEQAINYC-----DN 228
Cdd:PRK14955 164 TTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAFSvesegEG 243
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1489553191 229 AITESKVAEMLGAIDRSVLEDFFQSLINQDEARLKE--RYAILENYETEGVLEEMMLFLKAKLLSPDSYSILLIER 302
Cdd:PRK14955 244 SIRYDKVAELLNYIDDEHFFAVTDAVADGDAVAMLDvaQFVIRNGYDEQDFLEKLIEHLRNFLVVHNLRSTRLVER 319
|
|
| PRK14961 |
PRK14961 |
DNA polymerase III subunits gamma and tau; Provisional |
2-285 |
9.22e-77 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184925 [Multi-domain] Cd Length: 363 Bit Score: 247.80 E-value: 9.22e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 2 QVLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPKAVPCDTCTQCQSAL 81
Cdd:PRK14961 4 QILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 82 NNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLP 161
Cdd:PRK14961 84 KGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIP 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 162 ATILSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKVAEMLGA 241
Cdd:PRK14961 164 KTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGKGNINIKNVTDMLGL 243
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1489553191 242 IDRSVLEDFFQSLINQDEARLKERYAILEN--YETEGVLEEMMLFL 285
Cdd:PRK14961 244 LNEKQSFLLTDALLKKDSKKTMLLLNKISSigIEWENILIEMLRFL 289
|
|
| PRK14957 |
PRK14957 |
DNA polymerase III subunits gamma and tau; Provisional |
2-258 |
1.58e-75 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184921 [Multi-domain] Cd Length: 546 Bit Score: 250.38 E-value: 1.58e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 2 QVLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPKAVPCDTCTQCQSAL 81
Cdd:PRK14957 4 QALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAIN 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 82 NNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLP 161
Cdd:PRK14957 84 NNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIP 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 162 ATILSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKVAEMLGA 241
Cdd:PRK14957 164 VTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGELKQAQIKQMLGI 243
|
250
....*....|....*..
gi 1489553191 242 IDRSVLEDFFQSLINQD 258
Cdd:PRK14957 244 IDSEEVYSIINAIIDND 260
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
2-391 |
4.65e-74 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 248.32 E-value: 4.65e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 2 QVLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCE---EGPKAV-----PCDT 73
Cdd:PRK14954 4 QVIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQrmiDDPVYLqevtePCGE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 74 CTQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLA 153
Cdd:PRK14954 84 CESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 154 TTDALKLPATILSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLEQAI-----NYCDN 228
Cdd:PRK14954 164 TTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIafsvgSEAEK 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 229 AITESKVAEMLGAIDRSVLEDFFQSLINQDEARLKE--RYAILENYETEGVLEEMMLFLKAKLLSPDSYSILLIERFFKI 306
Cdd:PRK14954 244 VIAYQGVAELLNYIDDEQFFDVTDAIAENDAVKMLEvaRFVIDNGYDEQDFLEKLIEHFRNFLVLYNLRSTRLIERPESV 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 307 I----MSSLSLLKEGANASFVLLL-----LKMKFKEALKLKALDDAILELEQTPFNQNPSISYNAPKQEPKSTEKREQAE 377
Cdd:PRK14954 324 KeryqQSAGGLTPAAVMQMTDFLMktqgeLKFQFEYQFRFELALLRLIELVRNDGGVAPSPAGSPDVKKKAPEPDLPQPD 403
|
410
....*....|....
gi 1489553191 378 RIEGTEKREKLEKR 391
Cdd:PRK14954 404 RHPGPAKPEAPGAR 417
|
|
| PRK14963 |
PRK14963 |
DNA polymerase III subunits gamma and tau; Provisional |
1-240 |
1.40e-72 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184927 [Multi-domain] Cd Length: 504 Bit Score: 241.28 E-value: 1.40e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 1 MQVLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEeGPKAVPCDTCTQCQSA 80
Cdd:PRK14963 1 MSALYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS-GEDPKPCGECESCLAV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 81 LNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKL 160
Cdd:PRK14963 80 RRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKM 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 161 PATILSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLEQAINyCDNAITESKVAEMLG 240
Cdd:PRK14963 160 PPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLA-LGTPVTRKQVEEALG 238
|
|
| PRK05896 |
PRK05896 |
DNA polymerase III subunits gamma and tau; Validated |
1-277 |
8.29e-72 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235638 [Multi-domain] Cd Length: 605 Bit Score: 241.67 E-value: 8.29e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 1 MQVLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPKAVPCDTCTQCQSA 80
Cdd:PRK05896 3 EITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 81 LNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKL 160
Cdd:PRK05896 83 NTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKI 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 161 PATILSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKVAEMLG 240
Cdd:PRK05896 163 PLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSEIDIEDINKTFG 242
|
250 260 270
....*....|....*....|....*....|....*..
gi 1489553191 241 AIDRSVLEDFFQSLINQDearLKERYAILENYETEGV 277
Cdd:PRK05896 243 LVDNNKKINLIELIQKND---IEELRNLINELESKGI 276
|
|
| PRK14958 |
PRK14958 |
DNA polymerase III subunits gamma and tau; Provisional |
2-262 |
2.32e-71 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184922 [Multi-domain] Cd Length: 509 Bit Score: 238.09 E-value: 2.32e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 2 QVLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPKAVPCDTCTQCQSAL 81
Cdd:PRK14958 4 QVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREID 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 82 NNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLP 161
Cdd:PRK14958 84 EGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLP 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 162 ATILSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKVAEMLGA 241
Cdd:PRK14958 164 VTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGT 243
|
250 260
....*....|....*....|.
gi 1489553191 242 IDRSVLEDFFQSLINQDEARL 262
Cdd:PRK14958 244 IEPLLLFDILEALAAKAGDRL 264
|
|
| PRK14956 |
PRK14956 |
DNA polymerase III subunits gamma and tau; Provisional |
2-277 |
7.07e-71 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184920 [Multi-domain] Cd Length: 484 Bit Score: 236.00 E-value: 7.07e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 2 QVLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPKAVPCDTCTQCQSAL 81
Cdd:PRK14956 6 EVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEIT 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 82 NNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLP 161
Cdd:PRK14956 86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIP 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 162 ATILSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKVAEMLGA 241
Cdd:PRK14956 166 ETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMIGY 245
|
250 260 270
....*....|....*....|....*....|....*.
gi 1489553191 242 IDRSVLEDFFQSLINQDEArlKERYAILENYETEGV 277
Cdd:PRK14956 246 HGIEFLTSFIKSLIDPDNH--SKSLEILESLYQEGQ 279
|
|
| PRK14970 |
PRK14970 |
DNA polymerase III subunits gamma and tau; Provisional |
3-243 |
2.73e-65 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184934 [Multi-domain] Cd Length: 367 Bit Score: 217.82 E-value: 2.73e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 3 VLALKYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALmceegpkavpcdTCTQCQSALN 82
Cdd:PRK14970 6 VSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKI------------NQPGYDDPNE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 83 NHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPA 162
Cdd:PRK14970 74 DFSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 163 TILSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKVAEMLGAI 242
Cdd:PRK14970 154 TILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVTENLNIL 233
|
.
gi 1489553191 243 D 243
Cdd:PRK14970 234 D 234
|
|
| HolB |
COG0470 |
DNA polymerase III, delta prime subunit [Replication, recombination and repair]; |
19-283 |
7.35e-53 |
|
DNA polymerase III, delta prime subunit [Replication, recombination and repair];
Pssm-ID: 440238 [Multi-domain] Cd Length: 289 Bit Score: 182.10 E-value: 7.35e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 19 QESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPKAVPCDTCtQCQSALNNHHIDIIEM---DGAS 95
Cdd:COG0470 1 QEEAWEQLLAAAESGRLPHALLLHGPPGIGKTTLALALARDLLCENPEGGKACGQC-HSRLMAAGNHPDLLELnpeEKSD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 96 NRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFRFKK 175
Cdd:COG0470 80 QIGIDQIRELGEFLSLTPLEGGRKVVIIDEADAMNEAAANALLKTLEEPPKNTPFILIANDPSRLLPTIRSRCQVIRFRP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 176 IPENSVISHLKtileKEQVsyENSALEKLAHSGQGSLRDTITLLEQAINY------CDNAITESKVAEMLGAIDRSVLED 249
Cdd:COG0470 160 PSEEEALAWLR----EEGV--DEDALEAILRLAGGDPRAAINLLQALAGRkelledLAALLSRDRALELLDALLKAEALE 233
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1489553191 250 FFQSLINQ---------DEARLKERYAILEN---YETEGVLEEMML 283
Cdd:COG0470 234 LLDWLLKWlldnlpleyAGEDLARAYEALSEadrRLGRYANDRLLL 279
|
|
| DNA_pol3_delta2 |
pfam13177 |
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required ... |
18-177 |
5.06e-46 |
|
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA.
Pssm-ID: 433013 [Multi-domain] Cd Length: 161 Bit Score: 159.30 E-value: 5.06e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 18 GQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPKAVPCDTCTQCQSALNNHHIDI--IEMDGAS 95
Cdd:pfam13177 1 GQPEAIQLLQNSLENGRLSHAYLFSGPEGVGKLELALAFAKALFCEEPGDDLPCGQCRSCRRIESGNHPDLviIEPEGQS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 96 NRgIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFRFKK 175
Cdd:pfam13177 81 IK-IDQIRELQKEFSKSPYEGKKKVYIIEDAEKMTASAANSLLKFLEEPPGNTVIILLTENPSRLLPTIRSRCQIIRFKP 159
|
..
gi 1489553191 176 IP 177
Cdd:pfam13177 160 LS 161
|
|
| holB |
TIGR00678 |
DNA polymerase III, delta' subunit; This model describes the N-terminal half of the delta' ... |
24-213 |
1.72e-43 |
|
DNA polymerase III, delta' subunit; This model describes the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tighly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classisified as delta'. The noise cutoff is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273213 [Multi-domain] Cd Length: 188 Bit Score: 153.55 E-value: 1.72e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 24 KTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPKAVPCDTCTQCQSALNNHHID--IIEMDGASnRGIDD 101
Cdd:TIGR00678 2 QQLKRALEKGRLAHAYLFTGPEGVGKELLALALAKALLCEQRGGGEPCGECHSCRLIEAGNHPDlhRLEPEGQS-IKVDQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 102 VRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFRFKKIPENSv 181
Cdd:TIGR00678 81 VRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQRLPFPPLSEEA- 159
|
170 180 190
....*....|....*....|....*....|..
gi 1489553191 182 ishLKTILEKEQVSYENSALekLAHSGQGSLR 213
Cdd:TIGR00678 160 ---LLQWLIRQGISEEAAEL--LLALAGGSPG 186
|
|
| PRK07940 |
PRK07940 |
DNA polymerase III subunit delta'; Validated |
13-170 |
4.62e-28 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236134 [Multi-domain] Cd Length: 394 Bit Score: 116.16 E-value: 4.62e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 13 FSELVGQESVAKTLS---------LALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEeGPKAVPCDTCTQCQSALNN 83
Cdd:PRK07940 4 WDDLVGQEAVVAELRaaaraaradVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCT-DPDEPGCGECRACRTVLAG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 84 HHIDI--IEMDGASnRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLP 161
Cdd:PRK07940 83 THPDVrvVAPEGLS-IGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVL 161
|
....*....
gi 1489553191 162 ATILSRTQH 170
Cdd:PRK07940 162 PTIRSRCRH 170
|
|
| PRK08058 |
PRK08058 |
DNA polymerase III subunit delta'; Validated |
19-206 |
1.17e-26 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181214 [Multi-domain] Cd Length: 329 Bit Score: 110.79 E-value: 1.17e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 19 QESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPKAVPCDTCTQCQSALNNHHIDI--IEMDGASN 96
Cdd:PRK08058 11 QPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVhlVAPDGQSI 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 97 RgIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEP-PSHVKFLLATTDALKLPaTILSRTQHFRFKK 175
Cdd:PRK08058 91 K-KDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPsGGTTAILLTENKHQILP-TILSRCQVVEFRP 168
|
170 180 190
....*....|....*....|....*....|.
gi 1489553191 176 IPENSVIshlkTILEKEQVSYENSALekLAH 206
Cdd:PRK08058 169 LPPESLI----QRLQEEGISESLATL--LAG 193
|
|
| rfc |
PRK00440 |
replication factor C small subunit; Reviewed |
7-261 |
3.30e-25 |
|
replication factor C small subunit; Reviewed
Pssm-ID: 234763 [Multi-domain] Cd Length: 319 Bit Score: 106.50 E-value: 3.30e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 7 KYRPKHFSELVGQESVAKTLSLALDNQRLANaYLFSGLRGSGKTSSSRIFARALMCEegpkavpcdtctqcqsalnNHHI 86
Cdd:PRK00440 10 KYRPRTLDEIVGQEEIVERLKSYVKEKNMPH-LLFAGPPGTGKTTAALALARELYGE-------------------DWRE 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 87 DIIEMDGASNRGIDDVRNLIEQ-TRYKPSFG-RYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATI 164
Cdd:PRK00440 70 NFLELNASDERGIDVIRNKIKEfARTAPVGGaPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPI 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 165 LSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLeQAINYCDNAITESKVAEMLGAIDR 244
Cdd:PRK00440 150 QSRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINAL-QAAAATGKEVTEEAVYKITGTARP 228
|
250
....*....|....*....
gi 1489553191 245 SVLEDFFQSLINQD--EAR 261
Cdd:PRK00440 229 EEIREMIELALNGDftEAR 247
|
|
| PRK07399 |
PRK07399 |
DNA polymerase III subunit delta'; Validated |
13-211 |
4.10e-25 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236011 [Multi-domain] Cd Length: 314 Bit Score: 106.14 E-value: 4.10e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 13 FSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPKAvpcdtCTQCQsALNNHHIDII--- 89
Cdd:PRK07399 3 FANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSK-----NIRRR-LEEGNHPDLLwve 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 90 ---------------EMDGASNRG-----IDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEpPSHVK 149
Cdd:PRK07399 77 ptyqhqgklitaseaEEAGLKRKAppqirLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE-PGNGT 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1489553191 150 FLLATTDALKLPATILSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAhsgQGS 211
Cdd:PRK07399 156 LILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILNINFPELLALA---QGS 214
|
|
| PRK12402 |
PRK12402 |
replication factor C small subunit 2; Reviewed |
6-261 |
4.78e-23 |
|
replication factor C small subunit 2; Reviewed
Pssm-ID: 237090 [Multi-domain] Cd Length: 337 Bit Score: 100.45 E-value: 4.78e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 6 LKYRPKHFSELVGQESVAKTLSLALDNQRLANaYLFSGLRGSGKTSSSRIFARALMCEegpkavPCDTCT---------- 75
Cdd:PRK12402 7 EKYRPALLEDILGQDEVVERLSRAVDSPNLPH-LLVQGPPGSGKTAAVRALARELYGD------PWENNFtefnvadffd 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 76 QCQSALNN--HHIDIIEMDGASNRGIDDVRNLI--EQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFL 151
Cdd:PRK12402 80 QGKKYLVEdpRFAHFLGTDKRIRSSKIDNFKHVlkEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 152 LATTDALKLPATILSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLeQAINYCDNAIT 231
Cdd:PRK12402 160 IATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTL-QTAALAAGEIT 238
|
250 260 270
....*....|....*....|....*....|.
gi 1489553191 232 ESKVAEMLGAIDRS-VLEDFFQSLINQDEAR 261
Cdd:PRK12402 239 MEAAYEALGDVGTDeVIESLLDAAEAGDFTD 269
|
|
| PLN03025 |
PLN03025 |
replication factor C subunit; Provisional |
7-224 |
6.07e-22 |
|
replication factor C subunit; Provisional
Pssm-ID: 178596 [Multi-domain] Cd Length: 319 Bit Score: 96.72 E-value: 6.07e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 7 KYRPKHFSELVG-QESVAKTLSLALDNQrLANaYLFSGLRGSGKTSSSRIFARALMceeGPkavpcdtctqcqsalnNHH 85
Cdd:PLN03025 6 KYRPTKLDDIVGnEDAVSRLQVIARDGN-MPN-LILSGPPGTGKTTSILALAHELL---GP----------------NYK 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 86 IDIIEMDGASNRGIDDVRNLIE---QTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPA 162
Cdd:PLN03025 65 EAVLELNASDDRGIDVVRNKIKmfaQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIE 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1489553191 163 TILSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRdtitlleQAIN 224
Cdd:PLN03025 145 PIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMR-------QALN 199
|
|
| HLD_clamp_pol_III_gamma_tau |
cd18137 |
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit ... |
176-240 |
8.74e-21 |
|
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit gamma/tau is part of the DNA polymerase III holoenzyme. Gamma and tau subunits are isoforms, both containing the helical lid domain. Gamma interacts with the delta subunit to transfer the beta subunit on the DNA while tau serves as a scaffold to help in the dimerization of the core complex. Both are members of the clamp-loader clade of the AAA+ superfamily.
Pssm-ID: 350839 [Multi-domain] Cd Length: 65 Bit Score: 86.02 E-value: 8.74e-21
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1489553191 176 IPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKVAEMLG 240
Cdd:cd18137 1 ISVEDIVGRLAHILEKEGIEIEDEALELIARAAEGSMRDALSLLDQAIAFGGGRVTLDDVREMLG 65
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
4-240 |
3.06e-19 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 90.14 E-value: 3.06e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 4 LALKYRPKHFSELVGQESVA---KTLSLALDNQRLANAyLFSGLRGSGKTSSSRIFARALmceegpkavpcdtctqcqsa 80
Cdd:PRK13342 2 LAERMRPKTLDEVVGQEHLLgpgKPLRRMIEAGRLSSM-ILWGPPGTGKTTLARIIAGAT-------------------- 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 81 lnNHHIDIIEmdgASNRGIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEppSHVKFLLATTD--AL 158
Cdd:PRK13342 61 --DAPFEALS---AVTSGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED--GTITLIGATTEnpSF 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 159 KLPATILSRTQHFRFKKIPENSVISHLKTILEKEQ---VSYENSALEKLAHSGQGSLRDTITLLEQAINYcDNAITESKV 235
Cdd:PRK13342 134 EVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKErglVELDDEALDALARLANGDARRALNLLELAALG-VDSITLELL 212
|
....*
gi 1489553191 236 AEMLG 240
Cdd:PRK13342 213 EEALQ 217
|
|
| PRK08699 |
PRK08699 |
DNA polymerase III subunit delta'; Validated |
28-215 |
1.30e-18 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181538 [Multi-domain] Cd Length: 325 Bit Score: 87.23 E-value: 1.30e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 28 LALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEE-GPKAVPCDTCTQCQSALNNHHIDIIEMDGASNR--------- 97
Cdd:PRK08699 13 IAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCETpAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEpengrkllq 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 98 -GIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFRFKKI 176
Cdd:PRK08699 93 iKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAP 172
|
170 180 190
....*....|....*....|....*....|....*....
gi 1489553191 177 PENSVISHLktileKEQVSYEnsALEKLAHSGQGSLRDT 215
Cdd:PRK08699 173 SHEEALAYL-----RERGVAE--PEERLAFHSGAPLFDE 204
|
|
| PRK05707 |
PRK05707 |
DNA polymerase III subunit delta'; Validated |
30-173 |
1.26e-17 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180215 [Multi-domain] Cd Length: 328 Bit Score: 84.37 E-value: 1.26e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 30 LDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPKAVPCDTCTQCQSALNNHHID---IIEMDGASNRGIDDVRNLI 106
Cdd:PRK05707 16 AGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDnfvLEPEEADKTIKVDQVRELV 95
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1489553191 107 EQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFRF 173
Cdd:PRK05707 96 SFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQAC 162
|
|
| PRK06871 |
PRK06871 |
DNA polymerase III subunit delta'; Validated |
29-202 |
7.71e-17 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180738 [Multi-domain] Cd Length: 325 Bit Score: 81.70 E-value: 7.71e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 29 ALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPKAVPCDTCTQCQSALNNHHIDIIEMDGASNR--GIDDVRNLI 106
Cdd:PRK06871 17 AFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKdiGVDQVREIN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 107 EQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFRFKKIPENSVISHLK 186
Cdd:PRK06871 97 EKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQ 176
|
170
....*....|....*.
gi 1489553191 187 TilekeQVSYENSALE 202
Cdd:PRK06871 177 A-----QSSAEISEIL 187
|
|
| PRK05564 |
PRK05564 |
DNA polymerase III subunit delta'; Validated |
13-186 |
1.57e-16 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180132 [Multi-domain] Cd Length: 313 Bit Score: 80.85 E-value: 1.57e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 13 FSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPKavpcdtctqcqsalnnHHIDIIEMD 92
Cdd:PRK05564 3 FHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQR----------------EYVDIIEFK 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 93 GASNR--GIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQH 170
Cdd:PRK05564 67 PINKKsiGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQI 146
|
170
....*....|....*.
gi 1489553191 171 FRFKKIPENSVISHLK 186
Cdd:PRK05564 147 YKLNRLSKEEIEKFIS 162
|
|
| PRK06090 |
PRK06090 |
DNA polymerase III subunit delta'; Validated |
12-171 |
4.38e-16 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180394 [Multi-domain] Cd Length: 319 Bit Score: 79.46 E-value: 4.38e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 12 HFSELVgqeSVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPKAvPCDTCTQCQSALNNHHIDI--- 88
Cdd:PRK06090 4 DYPWLV---PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSE-ACGFCHSCELMQSGNHPDLhvi 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 89 -IEMDGASNRgIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSR 167
Cdd:PRK06090 80 kPEKEGKSIT-VEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSR 158
|
....
gi 1489553191 168 TQHF 171
Cdd:PRK06090 159 CQQW 162
|
|
| PRK08769 |
PRK08769 |
DNA polymerase III subunit delta'; Validated |
19-267 |
5.35e-15 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181551 [Multi-domain] Cd Length: 319 Bit Score: 76.15 E-value: 5.35e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 19 QESVAKTLSlALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEeGPKAVPCDTCTQCQSAlnNHHIDIIEMDGASNRG 98
Cdd:PRK08769 10 QRAYDQTVA-ALDAGRLGHGLLICGPEGLGKRAVALALAEHVLAS-GPDPAAAQRTRQLIAA--GTHPDLQLVSFIPNRT 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 99 IDDVRN--LIEQTR-------YKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQ 169
Cdd:PRK08769 86 GDKLRTeiVIEQVReisqklaLTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQ 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 170 HFRFKKIPENSVISHLKTilekeQVSYENSALEKL----AHSGQGS--LRDTITLLEQAInycdNAITESKVAEMLGAID 243
Cdd:PRK08769 166 RLEFKLPPAHEALAWLLA-----QGVSERAAQEALdaarGHPGLAAqwLREDGLALRRAV----AQDLEQIASGRAGAVD 236
|
250 260
....*....|....*....|....
gi 1489553191 244 RSvledffQSLINQDEARLKERYA 267
Cdd:PRK08769 237 VA------QRWTNDGQADQRLRHA 254
|
|
| PRK07993 |
PRK07993 |
DNA polymerase III subunit delta'; Validated |
38-167 |
5.82e-15 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181190 [Multi-domain] Cd Length: 334 Bit Score: 76.26 E-value: 5.82e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 38 AYLFSGLRGSGktSSSRIFA--RALMCE--EGPKAvpCDTCTQCQSALNNHHIDIIEMD---GASNRGIDDVRNLIEQTR 110
Cdd:PRK07993 26 ALLIQALPGMG--DDALIYAlsRWLMCQqpQGHKS--CGHCRGCQLMQAGTHPDYYTLTpekGKSSLGVDAVREVTEKLY 101
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1489553191 111 YKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSR 167
Cdd:PRK07993 102 EHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSR 158
|
|
| PRK06964 |
PRK06964 |
DNA polymerase III subunit delta'; Validated |
34-171 |
9.94e-15 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235898 [Multi-domain] Cd Length: 342 Bit Score: 75.57 E-value: 9.94e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 34 RLANAYLFSGLRGSGKTSSSRIFARALMCEE-GPKAVPCDTCTQCQSALNNHHID-------IIEMDGASNRG------- 98
Cdd:PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETpQPDGEPCGTCAACNWFAQGNHPDyrivrpeALAAEAPGAADeakeada 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 99 ---------------IDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPAT 163
Cdd:PRK06964 99 deggkktkapskeikIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPT 178
|
....*...
gi 1489553191 164 ILSRTQHF 171
Cdd:PRK06964 179 ILSRCRQF 186
|
|
| PRK09112 |
PRK09112 |
DNA polymerase III subunit delta'; Validated |
16-267 |
1.25e-13 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 169667 [Multi-domain] Cd Length: 351 Bit Score: 72.38 E-value: 1.25e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 16 LVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGPKAVP-------CDTCTQCQSALNNHH--- 85
Cdd:PRK09112 25 LFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPetladpdPASPVWRQIAQGAHPnll 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 86 -----IDiiEMDGASNRGI--DDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDAL 158
Cdd:PRK09112 105 hitrpFD--EKTGKFKTAItvDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSG 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 159 KLPATILSRTQHFRFKKIPEN---SVISHL-----------KTILEKEQVSYENSALekLAHSGQGSLRDTI-TLLEQAI 223
Cdd:PRK09112 183 RLLPTIRSRCQPISLKPLDDDelkKALSHLgssqgsdgeitEALLQRSKGSVRKALL--LLNYGGLEIIATIdQLLAGSG 260
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1489553191 224 nyCDNAITEsKVAEMLGAIDRSVLEDFFQSLIN---QDEAR---------LKERYA 267
Cdd:PRK09112 261 --PDARKAH-KLADALSGRESEVQFDFFRDHLLdriMAEARraaeagdlaLAERLA 313
|
|
| PRK07276 |
PRK07276 |
DNA polymerase III subunit delta'; Validated |
19-175 |
1.29e-13 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180916 [Multi-domain] Cd Length: 290 Bit Score: 71.59 E-value: 1.29e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 19 QESVAKTLSLALDNQRLANAYLFSGLRGSGKTSssRIFARALMCEEGPKAVPCDTCTQCQSALNNHHID--IIEMDGASN 96
Cdd:PRK07276 7 QPKVFQRFQTILEQDRLNHAYLFSGDFASFEMA--LFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDvtVIEPQGQVI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 97 RgIDDVRNLIE---QTRYKpsfGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVK-FLLATTDALKLPaTILSRTQHFR 172
Cdd:PRK07276 85 K-TDTIRELVKnfsQSGYE---GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYiFLLTNDENKVLP-TIKSRTQIFH 159
|
...
gi 1489553191 173 FKK 175
Cdd:PRK07276 160 FPK 162
|
|
| 44 |
PHA02544 |
clamp loader, small subunit; Provisional |
7-276 |
7.03e-13 |
|
clamp loader, small subunit; Provisional
Pssm-ID: 222866 [Multi-domain] Cd Length: 316 Bit Score: 69.63 E-value: 7.03e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 7 KYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSsrifARALmCEEgpkavpcdtctqcqsaLNnhhI 86
Cdd:PHA02544 14 KYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTV----AKAL-CNE----------------VG---A 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 87 DIIEMDGASNRgIDDVRNliEQTRYKPS---FGRYKIFIIDEVHMFTTEAFNALLKTL-EEPPSHVKFLLATTDALKLPA 162
Cdd:PHA02544 70 EVLFVNGSDCR-IDFVRN--RLTRFASTvslTGGGKVIIIDEFDRLGLADAQRHLRSFmEAYSKNCSFIITANNKNGIIE 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 163 TILSRTQHFRF------KKIPENS-VISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLEqainycDNAITESKV 235
Cdd:PHA02544 147 PLRSRCRVIDFgvptkeEQIEMMKqMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINELQ------RYASTGKID 220
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 1489553191 236 AEMLGAIDRSVLEDFFQSLINQDEARLKeryAILENYETEG 276
Cdd:PHA02544 221 AGILSEVTNSDIDDVVEALKAKDFKAVR---ALAPNYANDY 258
|
|
| PRK07471 |
PRK07471 |
DNA polymerase III subunit delta'; Validated |
9-219 |
2.14e-12 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236022 [Multi-domain] Cd Length: 365 Bit Score: 68.90 E-value: 2.14e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 9 RPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMC---EEGPKAVPCDTCTQCQ------- 78
Cdd:PRK07471 14 HPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLAtppPGGDGAVPPPTSLAIDpdhpvar 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 79 --SALNNHHIDIIEMdGASNRG--------IDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHV 148
Cdd:PRK07471 94 riAAGAHGGLLTLER-SWNEKGkrlrtvitVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARS 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1489553191 149 KFLLATTDALKLPATILSRTQHFRFKKIPENSVIShlktILEKEQVSYENSALEKLAHSGQGSLRDTITLL 219
Cdd:PRK07471 173 LFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVID----ALAAAGPDLPDDPRAALAALAEGSVGRALRLA 239
|
|
| PRK04195 |
PRK04195 |
replication factor C large subunit; Provisional |
5-267 |
3.41e-12 |
|
replication factor C large subunit; Provisional
Pssm-ID: 235250 [Multi-domain] Cd Length: 482 Bit Score: 68.79 E-value: 3.41e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 5 ALKYRPKHFSELVGQESVAKTLSL---ALDNQRLANAYLFSGLRGSGKTSSsrifARALMCEEGpkavpcdtctqcqsal 81
Cdd:PRK04195 5 VEKYRPKTLSDVVGNEKAKEQLREwieSWLKGKPKKALLLYGPPGVGKTSL----AHALANDYG---------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 82 nnhhIDIIEMDgASnrgidDVRNL--IEQT-----RYKPSFG-RYKIFIIDEV-HMFTTE---AFNALLKTLEEPPSHVk 149
Cdd:PRK04195 65 ----WEVIELN-AS-----DQRTAdvIERVageaaTSGSLFGaRRKLILLDEVdGIHGNEdrgGARAILELIKKAKQPI- 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 150 fLLATTDALKLP-ATILSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLeQAINYCDN 228
Cdd:PRK04195 134 -ILTANDPYDPSlRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDL-QAIAEGYG 211
|
250 260 270
....*....|....*....|....*....|....*....
gi 1489553191 229 AITESKVAEMLgaiDRSVLEDFFQSLInqdeARLKERYA 267
Cdd:PRK04195 212 KLTLEDVKTLG---RRDREESIFDALD----AVFKARNA 243
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
87-235 |
3.09e-11 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 66.40 E-value: 3.09e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 87 DIIEMDGASNRGIDDVRNLIEQ-TRYKPSFG-RYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATI 164
Cdd:PRK04132 598 NFLELNASDERGINVIREKVKEfARTKPIGGaSFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPI 677
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1489553191 165 LSRTQHFRFKKIPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLeQAINYCDNAITESKV 235
Cdd:PRK04132 678 QSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINIL-QAAAALDDKITDENV 747
|
|
| PRK05917 |
PRK05917 |
DNA polymerase III subunit delta'; Validated |
99-196 |
8.69e-11 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 102059 [Multi-domain] Cd Length: 290 Bit Score: 63.28 E-value: 8.69e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 99 IDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFRfkkIPE 178
Cdd:PRK05917 77 IETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIH---IPM 153
|
90
....*....|....*...
gi 1489553191 179 NSvishlKTILEKEQVSY 196
Cdd:PRK05917 154 EE-----KTLVSKEDIAY 166
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
17-173 |
5.76e-09 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 55.23 E-value: 5.76e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 17 VGQESVAKTLSLALDNQRLANaYLFSGLRGSGKTSSSRIFARALMCEEGPkavpcdtctqcqsalnnhhidIIEMDGASN 96
Cdd:cd00009 1 VGQEEAIEALREALELPPPKN-LLLYGPPGTGKTTLARAIANELFRPGAP---------------------FLYLNASDL 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 97 RGIDDVRNLIEQTRYKPSFGR-----YKIFIIDEVHMFTTEAFNALLKTLEE------PPSHVKFLLATTDAL--KLPAT 163
Cdd:cd00009 59 LEGLVVAELFGHFLVRLLFELaekakPGVLFIDEIDSLSRGAQNALLRVLETlndlriDRENVRVIGATNRPLlgDLDRA 138
|
170
....*....|.
gi 1489553191 164 ILSR-TQHFRF 173
Cdd:cd00009 139 LYDRlDIRIVI 149
|
|
| PRK07132 |
PRK07132 |
DNA polymerase III subunit delta'; Validated |
111-270 |
2.27e-08 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180855 [Multi-domain] Cd Length: 299 Bit Score: 55.88 E-value: 2.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 111 YKPSF--GRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFRFKKIPENSVISHLkti 188
Cdd:PRK07132 82 YFSSFvqSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKL--- 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 189 LEKEQVSYENSALEKLAHSgqgslrdtitlLEQAINYcDNAITESKVAEMLGAIDRSVLEDFfqSLINQDEARL-KERYA 267
Cdd:PRK07132 159 LSKNKEKEYNWFYAYIFSN-----------FEQAEKY-INKESENLLKKFEEALNKSLKEKY--ELILFLNKKLtKENAL 224
|
...
gi 1489553191 268 ILE 270
Cdd:PRK07132 225 FLL 227
|
|
| PRK08485 |
PRK08485 |
DNA polymerase III subunit delta'; Validated |
99-230 |
3.94e-08 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236274 [Multi-domain] Cd Length: 206 Bit Score: 53.88 E-value: 3.94e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 99 IDDVRNLIEQTRYKPSfgRYKIFIIdEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFRFK-KIP 177
Cdd:PRK08485 39 IEDAKEVIAEAYIAES--EEKIIVI-AAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLIIEKRKqKKP 115
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1489553191 178 ENSVISHLKTI-----------LEKEQVSYENSALEKLAHSGQGSLRDTITLLEQAINYCDNAI 230
Cdd:PRK08485 116 VKPLDLDLKKLdlkdiyeflkeLEKENKLSKEELKELIESLLKECVKYKIPLNEEELEYFDKAI 179
|
|
| PRK13341 |
PRK13341 |
AAA family ATPase; |
4-223 |
5.98e-07 |
|
AAA family ATPase;
Pssm-ID: 237354 [Multi-domain] Cd Length: 725 Bit Score: 52.36 E-value: 5.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 4 LALKYRPKHFSELVGQESV---AKTLSLALDNQRLANAyLFSGLRGSGKTSSSRIFARAlmceegpkavpcdtcTQCQ-S 79
Cdd:PRK13341 18 LADRLRPRTLEEFVGQDHIlgeGRLLRRAIKADRVGSL-ILYGPPGVGKTTLARIIANH---------------TRAHfS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 80 ALNnhhidiiemdgASNRGIDDVRNLIEQTRYK-PSFGRYKIFIIDEVHMFTTEAFNALLKTLEEppSHVKFLLATTD-- 156
Cdd:PRK13341 82 SLN-----------AVLAGVKDLRAEVDRAKERlERHGKRTILFIDEVHRFNKAQQDALLPWVEN--GTITLIGATTEnp 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 157 ------ALklpatiLSRTQHFRFKKIPENSVISHLKTILEKEQVSY-------ENSALEKLAHSGQGSLRDTITLLEQAI 223
Cdd:PRK13341 149 yfevnkAL------VSRSRLFRLKSLSDEDLHQLLKRALQDKERGYgdrkvdlEPEAEKHLVDVANGDARSLLNALELAV 222
|
|
| CDC6 |
COG1474 |
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair]; |
3-249 |
3.02e-05 |
|
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
Pssm-ID: 441083 [Multi-domain] Cd Length: 389 Bit Score: 46.38 E-value: 3.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 3 VLALKYRPkhfSELVG----QESVAKTLSLALDNQRLANAYLFsGLRGSGKTSSSRIFARALMCEEGPKAVPCDT----C 74
Cdd:COG1474 18 VLSPDYVP---DRLPHreeeIEELASALRPALRGERPSNVLIY-GPTGTGKTAVAKYVLEELEEEAEERGVDVRVvyvnC 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 75 TQCQS---ALnnHHI--DIIEMDGASNRGI--DDVRNLIeqTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTL-----E 142
Cdd:COG1474 94 RQASTryrVL--SRIleELGSGEDIPSTGLstDELFDRL--YEALDERDGVLVVVLDEIDYLVDDEGDDLLYQLlraneE 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 143 EPPSHVKFLLATTDaLKLPATILSRTQ-HFRFKKI---PENSviSHLKTILE-------KEQVsYENSALEKLA-HSGQ- 209
Cdd:COG1474 170 LEGARVGVIGISND-LEFLENLDPRVKsSLGEEEIvfpPYDA--DELRDILEdraelafYDGV-LSDEVIPLIAaLAAQe 245
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1489553191 210 -GSLRDTITLLEQAINYCDNA----ITESKVAEMLGAIDRSVLED 249
Cdd:COG1474 246 hGDARKAIDLLRVAGEIAEREgsdrVTEEHVREAREKIERDRLLE 290
|
|
| HolA |
COG1466 |
DNA polymerase III, delta subunit [Replication, recombination and repair]; |
115-350 |
3.54e-05 |
|
DNA polymerase III, delta subunit [Replication, recombination and repair];
Pssm-ID: 441075 [Multi-domain] Cd Length: 305 Bit Score: 46.01 E-value: 3.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 115 FGRYKIFIIDEVHMFT--TEAFNALLKTLEEPPSHVKFLLATTD---ALKLPATILSRTQHFRFKKIPENSVISHLKTIL 189
Cdd:COG1466 60 FGERRLVIVRNAEFLKkpGEGLEALEAYLANPPPDTVLVLTAGKldkRKKLFKALEKAGVVVECYPLKERELPAWIRQRL 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 190 EKEQVSYENSALEKLAHSGQGSLRDTITLLEQAINYC--DNAITESKVAEMLGAIDRSVLEDFFQSLINQDEARLkerYA 267
Cdd:COG1466 140 KAAGLRIDPDAAQLLAERVGGDLLALAQELEKLALYAgdGGTITLEDVEALVGDSAEFNVFDLADALLAGDAARA---LR 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 268 ILENYETEGvlEEMMLFLKAkllspdsysillIERFFKIIMSSLSLLKEGANASFVLLLLKM------KFKEALK---LK 338
Cdd:COG1466 217 ILRRLLAEG--EEPVLILAA------------LARQFRLLLQVKALLAQGKSLAEIAKELGVppfrvkLALRALRrwsLE 282
|
250
....*....|..
gi 1489553191 339 ALDDAILELEQT 350
Cdd:COG1466 283 RLARALQLLAEA 294
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
39-152 |
5.54e-05 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 43.52 E-value: 5.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 39 YLFSGLRGSGKTSSSRIFARALMCEEGP-KAVPCDTCTQCQSALNNHHidIIEMDGASNRGIDDVRNLIEQTRYKpsfgR 117
Cdd:smart00382 5 ILIVGPPGSGKTTLARALARELGPPGGGvIYIDGEDILEEVLDQLLLI--IVGGKKASGSGELRLRLALALARKL----K 78
|
90 100 110
....*....|....*....|....*....|....*
gi 1489553191 118 YKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLL 152
Cdd:smart00382 79 PDVLILDEITSLLDAEQEALLLLLEELRLLLLLKS 113
|
|
| HLD_clamp_RFC |
cd18140 |
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein ... |
176-237 |
5.88e-05 |
|
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein clamp loader complex that forms a stable ATP-dependent complex with the sliding clamp, PCNA, which binds specifically to primed DNA. RFC subunits belong to the clamp loader clade of the AAA+ superfamily.
Pssm-ID: 350842 [Multi-domain] Cd Length: 63 Bit Score: 40.98 E-value: 5.88e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1489553191 176 IPENSVISHLKTILEKEQVSYENSALEKLAHSGQGSLRDTITLLeQAINYCDNAITESKVAE 237
Cdd:cd18140 1 LSKEQIVKRLREICKKEGVKIDEEALEAIAEKSEGDMRKAINDL-QAAAAGGGVITEEDVYE 61
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
39-174 |
7.77e-05 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 42.58 E-value: 7.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 39 YLFSGLRGSGKTSSSRIFARALmceegpkavpcdtctqcqsalnnhHIDIIEMDGASNRGI------DDVRNLIEQTR-Y 111
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKEL------------------------GAPFIEISGSELVSKyvgeseKRLRELFEAAKkL 56
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1489553191 112 KPSfgrykIFIIDEVH-----------MFTTEAFNALLKTLEEP---PSHVKFLLATTDALKLPATILSRTQHFRFK 174
Cdd:pfam00004 57 APC-----VIFIDEIDalagsrgsggdSESRRVVNQLLTELDGFtssNSKVIVIAATNRPDKLDPALLGRFDRIIEF 128
|
|
| PRK05818 |
PRK05818 |
DNA polymerase III subunit delta'; Validated |
56-167 |
2.24e-04 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235618 [Multi-domain] Cd Length: 261 Bit Score: 43.28 E-value: 2.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 56 FARALMCEEGPKavPCDTCTQCQSALNNHHIDIIEMDGASN----RGIDDVRNLIEQTRYKpSFGRyKIFIIDEVHMFTT 131
Cdd:PRK05818 27 YLTSIVCTKANG--FCKTCESCLKILNGKYNDFYLIFDQKNpikkEDALSIINKLNRPSVE-SNGK-KIYIIYGIEKLNK 102
|
90 100 110
....*....|....*....|....*....|....*.
gi 1489553191 132 EAFNALLKTLEEPPSHVKFLLATTDALKLPATILSR 167
Cdd:PRK05818 103 QSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSR 138
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
36-160 |
2.05e-03 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 38.48 E-value: 2.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 36 ANAYLFSGLRGSGKTSSSRIFARALmCEEGPKAVPCDtCTQ--CQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKP 113
Cdd:pfam13401 5 AGILVLTGESGTGKTTLLRRLLEQL-PEVRDSVVFVD-LPSgtSPKDLLRALLRALGLPLSGRLSKEELLAALQQLLLAL 82
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1489553191 114 sfGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLA-TTDALKL 160
Cdd:pfam13401 83 --AVAVVLIIDEAQHLSLEALEELRDLLNLSSKLLQLILVgTPELREL 128
|
|
| RuvB_N |
pfam05496 |
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the ... |
9-60 |
2.57e-03 |
|
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Pssm-ID: 398900 [Multi-domain] Cd Length: 159 Bit Score: 39.02 E-value: 2.57e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 1489553191 9 RPKHFSELVGQESVAKTLSLALDNQRLANA----YLFSGLRGSGKTSSSRIFARAL 60
Cdd:pfam05496 2 RPRTLDEYIGQEKVKENLKIFIEAAKQRGEaldhVLLYGPPGLGKTTLANIIANEM 57
|
|
| PRK06581 |
PRK06581 |
DNA polymerase III subunit delta'; Validated |
90-167 |
4.67e-03 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235833 [Multi-domain] Cd Length: 263 Bit Score: 39.06 E-value: 4.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489553191 90 EMDGASNR---GIDDVRNLIEQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILS 166
Cdd:PRK06581 59 ETSATSNAkniSIEQIRKLQDFLSKTSAISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRS 138
|
.
gi 1489553191 167 R 167
Cdd:PRK06581 139 R 139
|
|
| |
