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Conserved domains on  [gi|1489380151|gb|RKU86571|]
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ATP synthase subunit alpha [Parabacteroides sp. AF39-10AC]

Protein Classification

F0F1 ATP synthase subunit alpha( domain architecture ID 11414601)

F0F1 ATP synthase subunit alpha is part of the catalytic core of the F-ATPase that uses a proton gradient to drive ATP synthesis; it hydrolyzes ATP to build the proton gradient and is found in bacterial, mitochondrial, and chloroplast membranes

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
AtpA COG0056
FoF1-type ATP synthase, alpha subunit [Energy production and conversion]; FoF1-type ATP ...
4-522 0e+00

FoF1-type ATP synthase, alpha subunit [Energy production and conversion]; FoF1-type ATP synthase, alpha subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


:

Pssm-ID: 439826 [Multi-domain]  Cd Length: 504  Bit Score: 969.51  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151   4 QIKVSEVSSILRQQLEGIHTSIKLEEVGTVLQVSDGVARIYGLDNAEANELLQFDNGMEAIVMNLEEDNVGAVLLGPTDQ 83
Cdd:COG0056     2 QIRPEEISSIIKQQIENYDPEVEVEEVGTVLSVGDGIARVYGLPNAMAGELLEFPGGVYGMALNLEEDNVGVVLLGDYEG 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  84 IKEGDTVKRTGRIASIDVSEGMIGRVIDPLGNPIDGKGEILGETcEMPLERKAPGVIFRQPVNEPLQTGIKAVDAMIPIG 163
Cdd:COG0056    82 IKEGDTVKRTGRILSVPVGEALLGRVVDPLGRPIDGKGPIEAEE-RRPVERPAPGVIDRQPVHEPLQTGIKAIDAMIPIG 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 164 RGQRELIIGDRQTGKTSIAIDTIINQRsnyeaGNPVYCIYVAIGQKGSTVAALVNTLQEKGAMDYTIVVSATASDPAAMQ 243
Cdd:COG0056   161 RGQRELIIGDRQTGKTAIAIDTIINQK-----GKDVICIYVAIGQKASTVAQVVETLEEHGAMEYTIVVAATASDPAPLQ 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 244 YFAPFAGAAIGEYFRDSGRHALVVYDDLSKQAVAYREVSLILRRPSGREAYPGDIFYLHSRLLERAAKiinqpevaremn 323
Cdd:COG0056   236 YIAPYAGCAMGEYFMDQGKDVLIVYDDLSKHAVAYRELSLLLRRPPGREAYPGDVFYLHSRLLERAAK------------ 303
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 324 dlpesMRDKvKGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNQGNRPAINVGISVSRVGGNAQLKAMKK 403
Cdd:COG0056   304 -----LSDE-LGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESDLFNAGIRPAINVGLSVSRVGGAAQIKAMKK 377
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 404 VAGTLKIDQAQFRELESFSKFGGEMDAVTAFTIDKGQKNTQLLIQPQYSPMPVEEQISILYCGTQGLLKEVPLDKVHEFE 483
Cdd:COG0056   378 VAGTLRLDLAQYRELEAFAQFGSDLDEATRAQLERGERLVELLKQPQYSPLSVEEQVAILYAGTNGYLDDVPVEKVREFE 457
                         490       500       510       520
                  ....*....|....*....|....*....|....*....|
gi 1489380151 484 ARFLQELRTSHQrDVLDVLK-TGVINDEIRGILEKTAKEL 522
Cdd:COG0056   458 KELLEYLRAKHP-DLLKEIReTGKLDDEIEEKLKAAIEEF 496
 
Name Accession Description Interval E-value
AtpA COG0056
FoF1-type ATP synthase, alpha subunit [Energy production and conversion]; FoF1-type ATP ...
4-522 0e+00

FoF1-type ATP synthase, alpha subunit [Energy production and conversion]; FoF1-type ATP synthase, alpha subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 439826 [Multi-domain]  Cd Length: 504  Bit Score: 969.51  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151   4 QIKVSEVSSILRQQLEGIHTSIKLEEVGTVLQVSDGVARIYGLDNAEANELLQFDNGMEAIVMNLEEDNVGAVLLGPTDQ 83
Cdd:COG0056     2 QIRPEEISSIIKQQIENYDPEVEVEEVGTVLSVGDGIARVYGLPNAMAGELLEFPGGVYGMALNLEEDNVGVVLLGDYEG 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  84 IKEGDTVKRTGRIASIDVSEGMIGRVIDPLGNPIDGKGEILGETcEMPLERKAPGVIFRQPVNEPLQTGIKAVDAMIPIG 163
Cdd:COG0056    82 IKEGDTVKRTGRILSVPVGEALLGRVVDPLGRPIDGKGPIEAEE-RRPVERPAPGVIDRQPVHEPLQTGIKAIDAMIPIG 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 164 RGQRELIIGDRQTGKTSIAIDTIINQRsnyeaGNPVYCIYVAIGQKGSTVAALVNTLQEKGAMDYTIVVSATASDPAAMQ 243
Cdd:COG0056   161 RGQRELIIGDRQTGKTAIAIDTIINQK-----GKDVICIYVAIGQKASTVAQVVETLEEHGAMEYTIVVAATASDPAPLQ 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 244 YFAPFAGAAIGEYFRDSGRHALVVYDDLSKQAVAYREVSLILRRPSGREAYPGDIFYLHSRLLERAAKiinqpevaremn 323
Cdd:COG0056   236 YIAPYAGCAMGEYFMDQGKDVLIVYDDLSKHAVAYRELSLLLRRPPGREAYPGDVFYLHSRLLERAAK------------ 303
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 324 dlpesMRDKvKGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNQGNRPAINVGISVSRVGGNAQLKAMKK 403
Cdd:COG0056   304 -----LSDE-LGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESDLFNAGIRPAINVGLSVSRVGGAAQIKAMKK 377
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 404 VAGTLKIDQAQFRELESFSKFGGEMDAVTAFTIDKGQKNTQLLIQPQYSPMPVEEQISILYCGTQGLLKEVPLDKVHEFE 483
Cdd:COG0056   378 VAGTLRLDLAQYRELEAFAQFGSDLDEATRAQLERGERLVELLKQPQYSPLSVEEQVAILYAGTNGYLDDVPVEKVREFE 457
                         490       500       510       520
                  ....*....|....*....|....*....|....*....|
gi 1489380151 484 ARFLQELRTSHQrDVLDVLK-TGVINDEIRGILEKTAKEL 522
Cdd:COG0056   458 KELLEYLRAKHP-DLLKEIReTGKLDDEIEEKLKAAIEEF 496
PRK09281 PRK09281
F0F1 ATP synthase subunit alpha; Validated
4-522 0e+00

F0F1 ATP synthase subunit alpha; Validated


Pssm-ID: 236448 [Multi-domain]  Cd Length: 502  Bit Score: 955.67  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151   4 QIKVSEVSSILRQQLEGIHTSIKLEEVGTVLQVSDGVARIYGLDNAEANELLQFDNGMEAIVMNLEEDNVGAVLLGPTDQ 83
Cdd:PRK09281    2 QINPEEISAIIKQQIENFDAEAEVEEVGTVISVGDGIARVYGLDNVMAGELLEFPGGVYGIALNLEEDNVGAVILGDYED 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  84 IKEGDTVKRTGRIASIDVSEGMIGRVIDPLGNPIDGKGEILGETcEMPLERKAPGVIFRQPVNEPLQTGIKAVDAMIPIG 163
Cdd:PRK09281   82 IKEGDTVKRTGRILEVPVGEALLGRVVNPLGQPIDGKGPIEATE-TRPVERKAPGVIDRKSVHEPLQTGIKAIDAMIPIG 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 164 RGQRELIIGDRQTGKTSIAIDTIINQRsnyeaGNPVYCIYVAIGQKGSTVAALVNTLQEKGAMDYTIVVSATASDPAAMQ 243
Cdd:PRK09281  161 RGQRELIIGDRQTGKTAIAIDTIINQK-----GKDVICIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPAPLQ 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 244 YFAPFAGAAIGEYFRDSGRHALVVYDDLSKQAVAYREVSLILRRPSGREAYPGDIFYLHSRLLERAAKiinqpevaremn 323
Cdd:PRK09281  236 YLAPYAGCAMGEYFMDNGKDALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAK------------ 303
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 324 dlpesMRDKvKGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNQGNRPAINVGISVSRVGGNAQLKAMKK 403
Cdd:PRK09281  304 -----LSDE-LGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESDLFNAGIRPAINVGISVSRVGGAAQIKAMKK 377
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 404 VAGTLKIDQAQFRELESFSKFGGEMDAVTAFTIDKGQKNTQLLIQPQYSPMPVEEQISILYCGTQGLLKEVPLDKVHEFE 483
Cdd:PRK09281  378 VAGTLRLDLAQYRELEAFAQFGSDLDEATRAQLERGQRLVELLKQPQYSPLPVEEQVVILYAGTNGYLDDVPVEKVRRFE 457
                         490       500       510
                  ....*....|....*....|....*....|....*....
gi 1489380151 484 ARFLQELRTSHQRDVLDVLKTGVINDEIRGILEKTAKEL 522
Cdd:PRK09281  458 AELLAYLRSNHADLLEEIRETKDLSDEIEAKLKAAIEEF 496
atpA TIGR00962
proton translocating ATP synthase, F1 alpha subunit; The sequences of ATP synthase F1 alpha ...
4-522 0e+00

proton translocating ATP synthase, F1 alpha subunit; The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273365 [Multi-domain]  Cd Length: 501  Bit Score: 780.42  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151   4 QIKVSEVSSILRQQLEGIHTSIKLEEVGTVLQVSDGVARIYGLDNAEANELLQFDNGMEAIVMNLEEDNVGAVLLGPTDQ 83
Cdd:TIGR00962   1 QLKLEEISELIKQEIKNFNVDSEAEEVGTVVSVGDGIARVYGLENVMSGELIEFEGGVQGIALNLEEDSVGAVIMGDYSD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  84 IKEGDTVKRTGRIASIDVSEGMIGRVIDPLGNPIDGKGEILGETCEmPLERKAPGVIFRQPVNEPLQTGIKAVDAMIPIG 163
Cdd:TIGR00962  81 IREGSTVKRTGRILEVPVGDGLLGRVVNALGEPIDGKGPIDSDEFS-PVEKIAPGVIERKSVHEPLQTGIKAIDAMIPIG 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 164 RGQRELIIGDRQTGKTSIAIDTIINQRsnyeaGNPVYCIYVAIGQKGSTVAALVNTLQEKGAMDYTIVVSATASDPAAMQ 243
Cdd:TIGR00962 160 RGQRELIIGDRQTGKTAVAIDTIINQK-----DSDVYCIYVAIGQKASTVAQVVRKLEEHGAMAYTIVVAATASDSASLQ 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 244 YFAPFAGAAIGEYFRDSGRHALVVYDDLSKQAVAYREVSLILRRPSGREAYPGDIFYLHSRLLERAAKiinqpevareMN 323
Cdd:TIGR00962 235 YLAPYTGCTMGEYFRDNGKHALIIYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRLLERAAK----------LN 304
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 324 DlpesmrdkVKGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNQGNRPAINVGISVSRVGGNAQLKAMKK 403
Cdd:TIGR00962 305 D--------EKGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESDLFNSGIRPAINVGLSVSRVGGAAQIKAMKQ 376
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 404 VAGTLKIDQAQFRELESFSKFGGEMDAVTAFTIDKGQKNTQLLIQPQYSPMPVEEQISILYCGTQGLLKEVPLDKVHEFE 483
Cdd:TIGR00962 377 VAGSLRLELAQYRELEAFSQFASDLDEATKKQLERGQRVVELLKQPQYKPLSVEEQVVILFAGTKGYLDDIPVDKIRKFE 456
                         490       500       510
                  ....*....|....*....|....*....|....*....
gi 1489380151 484 ARFLQELRTSHQRDVLDVLKTGVINDEIRGILEKTAKEL 522
Cdd:TIGR00962 457 QALLAYLDANHPDILEEINTTKKLTEELEAKLKEALKNF 495
F1-ATPase_alpha_CD cd01132
F1 ATP synthase alpha subunit, central domain; The F-ATPase is found in bacterial plasma ...
96-393 0e+00

F1 ATP synthase alpha subunit, central domain; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The mitochondrial extrinsic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic. Alpha and beta subunits form the globular catalytic moiety, a hexameric ring of alternating alpha and beta subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton-translocating domain.


Pssm-ID: 410876 [Multi-domain]  Cd Length: 274  Bit Score: 556.79  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  96 IASIDVSEGMIGRVIDPLGNPIDGKGEILGETcEMPLERKAPGVIFRQPVNEPLQTGIKAVDAMIPIGRGQRELIIGDRQ 175
Cdd:cd01132     1 IVEVPVGEALLGRVVDALGNPIDGKGPIQTKE-RRRVESKAPGIIPRQSVNEPLQTGIKAIDSLIPIGRGQRELIIGDRQ 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 176 TGKTSIAIDTIINQRsnyeaGNPVYCIYVAIGQKGSTVAALVNTLQEKGAMDYTIVVSATASDPAAMQYFAPFAGAAIGE 255
Cdd:cd01132    80 TGKTAIAIDTIINQK-----GKKVYCIYVAIGQKRSTVAQIVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYAGCAMGE 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 256 YFRDSGRHALVVYDDLSKQAVAYREVSLILRRPSGREAYPGDIFYLHSRLLERAAKiinqpevareMNDlpesmrdkVKG 335
Cdd:cd01132   155 YFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAK----------LSD--------ELG 216
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1489380151 336 GGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNQGNRPAINVGISVSRVG 393
Cdd:cd01132   217 GGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESELFNKGIRPAINVGLSVSRVG 274
ATP-synt_ab pfam00006
ATP synthase alpha/beta family, nucleotide-binding domain; This entry includes the ATP ...
152-390 6.62e-111

ATP synthase alpha/beta family, nucleotide-binding domain; This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.


Pssm-ID: 425417 [Multi-domain]  Cd Length: 212  Bit Score: 328.16  E-value: 6.62e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 152 GIKAVDAMIPIGRGQRELIIGDRQTGKTSIAiDTIINQRSNYeagnpvYCIYVAIGQKGSTVAALVNTLQEKGAMDYTIV 231
Cdd:pfam00006   1 GIRAIDGLLPIGRGQRIGIFGGSGVGKTVLA-GMIARQASAD------VVVYALIGERGREVREFIEELLGSGALKRTVV 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 232 VSATASDPAAMQYFAPFAGAAIGEYFRDSGRHALVVYDDLSKQAVAYREVSLILRRPSGREAYPGDIFYLHSRLLERAAK 311
Cdd:pfam00006  74 VVATSDEPPLARYRAPYTALTIAEYFRDQGKDVLLIMDSLTRFAEALREISLALGEPPGREGYPPSVFSLLARLLERAGR 153
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1489380151 312 IINqpevaremndlpesmrdkvkGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNQGNRPAINVGISVS 390
Cdd:pfam00006 154 VKG--------------------KGGSITALPTVLVPGDDITDPIPDNTRSILDGQIVLSRDLAEKGHYPAIDVLASVS 212
 
Name Accession Description Interval E-value
AtpA COG0056
FoF1-type ATP synthase, alpha subunit [Energy production and conversion]; FoF1-type ATP ...
4-522 0e+00

FoF1-type ATP synthase, alpha subunit [Energy production and conversion]; FoF1-type ATP synthase, alpha subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 439826 [Multi-domain]  Cd Length: 504  Bit Score: 969.51  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151   4 QIKVSEVSSILRQQLEGIHTSIKLEEVGTVLQVSDGVARIYGLDNAEANELLQFDNGMEAIVMNLEEDNVGAVLLGPTDQ 83
Cdd:COG0056     2 QIRPEEISSIIKQQIENYDPEVEVEEVGTVLSVGDGIARVYGLPNAMAGELLEFPGGVYGMALNLEEDNVGVVLLGDYEG 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  84 IKEGDTVKRTGRIASIDVSEGMIGRVIDPLGNPIDGKGEILGETcEMPLERKAPGVIFRQPVNEPLQTGIKAVDAMIPIG 163
Cdd:COG0056    82 IKEGDTVKRTGRILSVPVGEALLGRVVDPLGRPIDGKGPIEAEE-RRPVERPAPGVIDRQPVHEPLQTGIKAIDAMIPIG 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 164 RGQRELIIGDRQTGKTSIAIDTIINQRsnyeaGNPVYCIYVAIGQKGSTVAALVNTLQEKGAMDYTIVVSATASDPAAMQ 243
Cdd:COG0056   161 RGQRELIIGDRQTGKTAIAIDTIINQK-----GKDVICIYVAIGQKASTVAQVVETLEEHGAMEYTIVVAATASDPAPLQ 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 244 YFAPFAGAAIGEYFRDSGRHALVVYDDLSKQAVAYREVSLILRRPSGREAYPGDIFYLHSRLLERAAKiinqpevaremn 323
Cdd:COG0056   236 YIAPYAGCAMGEYFMDQGKDVLIVYDDLSKHAVAYRELSLLLRRPPGREAYPGDVFYLHSRLLERAAK------------ 303
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 324 dlpesMRDKvKGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNQGNRPAINVGISVSRVGGNAQLKAMKK 403
Cdd:COG0056   304 -----LSDE-LGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESDLFNAGIRPAINVGLSVSRVGGAAQIKAMKK 377
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 404 VAGTLKIDQAQFRELESFSKFGGEMDAVTAFTIDKGQKNTQLLIQPQYSPMPVEEQISILYCGTQGLLKEVPLDKVHEFE 483
Cdd:COG0056   378 VAGTLRLDLAQYRELEAFAQFGSDLDEATRAQLERGERLVELLKQPQYSPLSVEEQVAILYAGTNGYLDDVPVEKVREFE 457
                         490       500       510       520
                  ....*....|....*....|....*....|....*....|
gi 1489380151 484 ARFLQELRTSHQrDVLDVLK-TGVINDEIRGILEKTAKEL 522
Cdd:COG0056   458 KELLEYLRAKHP-DLLKEIReTGKLDDEIEEKLKAAIEEF 496
PRK09281 PRK09281
F0F1 ATP synthase subunit alpha; Validated
4-522 0e+00

F0F1 ATP synthase subunit alpha; Validated


Pssm-ID: 236448 [Multi-domain]  Cd Length: 502  Bit Score: 955.67  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151   4 QIKVSEVSSILRQQLEGIHTSIKLEEVGTVLQVSDGVARIYGLDNAEANELLQFDNGMEAIVMNLEEDNVGAVLLGPTDQ 83
Cdd:PRK09281    2 QINPEEISAIIKQQIENFDAEAEVEEVGTVISVGDGIARVYGLDNVMAGELLEFPGGVYGIALNLEEDNVGAVILGDYED 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  84 IKEGDTVKRTGRIASIDVSEGMIGRVIDPLGNPIDGKGEILGETcEMPLERKAPGVIFRQPVNEPLQTGIKAVDAMIPIG 163
Cdd:PRK09281   82 IKEGDTVKRTGRILEVPVGEALLGRVVNPLGQPIDGKGPIEATE-TRPVERKAPGVIDRKSVHEPLQTGIKAIDAMIPIG 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 164 RGQRELIIGDRQTGKTSIAIDTIINQRsnyeaGNPVYCIYVAIGQKGSTVAALVNTLQEKGAMDYTIVVSATASDPAAMQ 243
Cdd:PRK09281  161 RGQRELIIGDRQTGKTAIAIDTIINQK-----GKDVICIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPAPLQ 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 244 YFAPFAGAAIGEYFRDSGRHALVVYDDLSKQAVAYREVSLILRRPSGREAYPGDIFYLHSRLLERAAKiinqpevaremn 323
Cdd:PRK09281  236 YLAPYAGCAMGEYFMDNGKDALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAK------------ 303
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 324 dlpesMRDKvKGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNQGNRPAINVGISVSRVGGNAQLKAMKK 403
Cdd:PRK09281  304 -----LSDE-LGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESDLFNAGIRPAINVGISVSRVGGAAQIKAMKK 377
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 404 VAGTLKIDQAQFRELESFSKFGGEMDAVTAFTIDKGQKNTQLLIQPQYSPMPVEEQISILYCGTQGLLKEVPLDKVHEFE 483
Cdd:PRK09281  378 VAGTLRLDLAQYRELEAFAQFGSDLDEATRAQLERGQRLVELLKQPQYSPLPVEEQVVILYAGTNGYLDDVPVEKVRRFE 457
                         490       500       510
                  ....*....|....*....|....*....|....*....
gi 1489380151 484 ARFLQELRTSHQRDVLDVLKTGVINDEIRGILEKTAKEL 522
Cdd:PRK09281  458 AELLAYLRSNHADLLEEIRETKDLSDEIEAKLKAAIEEF 496
atpA TIGR00962
proton translocating ATP synthase, F1 alpha subunit; The sequences of ATP synthase F1 alpha ...
4-522 0e+00

proton translocating ATP synthase, F1 alpha subunit; The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273365 [Multi-domain]  Cd Length: 501  Bit Score: 780.42  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151   4 QIKVSEVSSILRQQLEGIHTSIKLEEVGTVLQVSDGVARIYGLDNAEANELLQFDNGMEAIVMNLEEDNVGAVLLGPTDQ 83
Cdd:TIGR00962   1 QLKLEEISELIKQEIKNFNVDSEAEEVGTVVSVGDGIARVYGLENVMSGELIEFEGGVQGIALNLEEDSVGAVIMGDYSD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  84 IKEGDTVKRTGRIASIDVSEGMIGRVIDPLGNPIDGKGEILGETCEmPLERKAPGVIFRQPVNEPLQTGIKAVDAMIPIG 163
Cdd:TIGR00962  81 IREGSTVKRTGRILEVPVGDGLLGRVVNALGEPIDGKGPIDSDEFS-PVEKIAPGVIERKSVHEPLQTGIKAIDAMIPIG 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 164 RGQRELIIGDRQTGKTSIAIDTIINQRsnyeaGNPVYCIYVAIGQKGSTVAALVNTLQEKGAMDYTIVVSATASDPAAMQ 243
Cdd:TIGR00962 160 RGQRELIIGDRQTGKTAVAIDTIINQK-----DSDVYCIYVAIGQKASTVAQVVRKLEEHGAMAYTIVVAATASDSASLQ 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 244 YFAPFAGAAIGEYFRDSGRHALVVYDDLSKQAVAYREVSLILRRPSGREAYPGDIFYLHSRLLERAAKiinqpevareMN 323
Cdd:TIGR00962 235 YLAPYTGCTMGEYFRDNGKHALIIYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRLLERAAK----------LN 304
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 324 DlpesmrdkVKGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNQGNRPAINVGISVSRVGGNAQLKAMKK 403
Cdd:TIGR00962 305 D--------EKGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESDLFNSGIRPAINVGLSVSRVGGAAQIKAMKQ 376
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 404 VAGTLKIDQAQFRELESFSKFGGEMDAVTAFTIDKGQKNTQLLIQPQYSPMPVEEQISILYCGTQGLLKEVPLDKVHEFE 483
Cdd:TIGR00962 377 VAGSLRLELAQYRELEAFSQFASDLDEATKKQLERGQRVVELLKQPQYKPLSVEEQVVILFAGTKGYLDDIPVDKIRKFE 456
                         490       500       510
                  ....*....|....*....|....*....|....*....
gi 1489380151 484 ARFLQELRTSHQRDVLDVLKTGVINDEIRGILEKTAKEL 522
Cdd:TIGR00962 457 QALLAYLDANHPDILEEINTTKKLTEELEAKLKEALKNF 495
PRK13343 PRK13343
F0F1 ATP synthase subunit alpha; Provisional
9-522 0e+00

F0F1 ATP synthase subunit alpha; Provisional


Pssm-ID: 183987 [Multi-domain]  Cd Length: 502  Bit Score: 741.73  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151   9 EVSSILRQQLEGIHTSIKLEEVGTVLQVSDGVARIYGLDNAEANELLQFDNGMEAIVMNLEEDNVGAVLLGPTDQIKEGD 88
Cdd:PRK13343    7 EWLARIRQRIARYEPQPDAREIGRVESVGDGIAFVSGLPDAALDELLRFEGGSRGFAFNLEEELVGAVLLDDTADILAGT 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  89 TVKRTGRIASIDVSEGMIGRVIDPLGNPIDGKGEiLGETCEMPLERKAPGVIFRQPVNEPLQTGIKAVDAMIPIGRGQRE 168
Cdd:PRK13343   87 EVRRTGRVLEVPVGDGLLGRVIDPLGRPLDGGGP-LQATARRPLERPAPAIIERDFVTEPLQTGIKVVDALIPIGRGQRE 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 169 LIIGDRQTGKTSIAIDTIINQRsnyeaGNPVYCIYVAIGQKGSTVAALVNTLQEKGAMDYTIVVSATASDPAAMQYFAPF 248
Cdd:PRK13343  166 LIIGDRQTGKTAIAIDAIINQK-----DSDVICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQYLAPF 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 249 AGAAIGEYFRDSGRHALVVYDDLSKQAVAYREVSLILRRPSGREAYPGDIFYLHSRLLERAAKiinqpevareMNDLpes 328
Cdd:PRK13343  241 AGCAIAEYFRDQGQDALIVYDDLSKHAAAYRELSLLLRRPPGREAYPGDIFYLHSRLLERAAK----------LSPE--- 307
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 329 mrdkvKGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNQGNRPAINVGISVSRVGGNAQLKAMKKVAGTL 408
Cdd:PRK13343  308 -----LGGGSLTALPIIETLAGELSAYIPTNLISITDGQIYLDSDLFAAGQRPAVDVGLSVSRVGGKAQHPAIRKESGRL 382
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 409 KIDQAQFRELESFSKFGGEMDAVTAFTIDKGQKNTQLLIQPQYSPMPVEEQISILYCGTQGLLKEVPLDKVHEFEARFLQ 488
Cdd:PRK13343  383 RLDYAQFLELEAFTRFGGLLDAGTQKQITRGRRLRELLKQPRFSPLSVEEQIALLYALNEGLLDAVPLANIQAFEERLLE 462
                         490       500       510
                  ....*....|....*....|....*....|....
gi 1489380151 489 ELRTSHQRDVLDVLKTGVINDEIRGILEKTAKEL 522
Cdd:PRK13343  463 KLDARFAALSLALESPRELDEAWLAALEEILREA 496
atpA CHL00059
ATP synthase CF1 alpha subunit
25-521 0e+00

ATP synthase CF1 alpha subunit


Pssm-ID: 176999 [Multi-domain]  Cd Length: 485  Bit Score: 722.52  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  25 IKLEEVGTVLQVSDGVARIYGLDNAEANELLQFDNGMEAIVMNLEEDNVGAVLLGPTDQIKEGDTVKRTGRIASIDVSEG 104
Cdd:CHL00059    2 VKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEDGTIGIALNLESNNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEA 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 105 MIGRVIDPLGNPIDGKGEIlgETCEMPL-ERKAPGVIFRQPVNEPLQTGIKAVDAMIPIGRGQRELIIGDRQTGKTSIAI 183
Cdd:CHL00059   82 YLGRVVNALAKPIDGKGEI--SASESRLiESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVAT 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 184 DTIINQRsnyeaGNPVYCIYVAIGQKGSTVAALVNTLQEKGAMDYTIVVSATASDPAAMQYFAPFAGAAIGEYFRDSGRH 263
Cdd:CHL00059  160 DTILNQK-----GQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRGRH 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 264 ALVVYDDLSKQAVAYREVSLILRRPSGREAYPGDIFYLHSRLLERAAKIINQpevaremndlpesmrdkvKGGGSLTALP 343
Cdd:CHL00059  235 TLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQ------------------LGEGSMTALP 296
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 344 IIETQAGDVSAYIPTNVISITDGQIFLETDLFNQGNRPAINVGISVSRVGGNAQLKAMKKVAGTLKIDQAQFRELESFSK 423
Cdd:CHL00059  297 IVETQAGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQ 376
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 424 FGGEMDAVTAFTIDKGQKNTQLLIQPQYSPMPVEEQISILYCGTQGLLKEVPLDKVHEFEARFLQELRTSHQRDVLDVLK 503
Cdd:CHL00059  377 FASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQVATIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISS 456
                         490
                  ....*....|....*...
gi 1489380151 504 TGVINDEIRGILEKTAKE 521
Cdd:CHL00059  457 TKTFTEEAEALLKEAIQE 474
alt_F1F0_F1_al TIGR03324
alternate F1F0 ATPase, F1 subunit alpha; A small number of taxonomically diverse prokaryotic ...
14-520 0e+00

alternate F1F0 ATPase, F1 subunit alpha; A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.


Pssm-ID: 132367 [Multi-domain]  Cd Length: 497  Bit Score: 565.93  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  14 LRQQLEGIHTSIKLEEVGTVLQVSDGVARIYGLDNAEANELLQFDNGMEAIVMNLEEDNVGAVLLGPTDQIKEGDTVKRT 93
Cdd:TIGR03324  12 LDQARESFQPQLTVQEVGTVESVSTGIARVHGLPGVGFEELLRFPGGLLGIAFNVDEDEVGVVLLGEYSHLQAGDEVERT 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  94 GRIASIDVSEGMIGRVIDPLGNPIDGKGEiLGETCEMPLERKAPGVIFRQPVNEPLQTGIKAVDAMIPIGRGQRELIIGD 173
Cdd:TIGR03324  92 GRVMDVPVGDGLLGRVVDPLGRPLDGGGP-LASSPRLPIERPAPPIMDRAPVTVPLQTGLKVIDALIPIGRGQRELILGD 170
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 174 RQTGKTSIAIDTIINQRsnyeaGNPVYCIYVAIGQKGSTVAALVNTLQEKGAMDYTIVVSATASDPAAMQYFAPFAGAAI 253
Cdd:TIGR03324 171 RQTGKTAIAIDTILNQK-----GRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIAPYAATSI 245
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 254 GEYFRDSGRHALVVYDDLSKQAVAYREVSLILRRPSGREAYPGDIFYLHSRLLERAAKIInqpevaremndlpesmrdKV 333
Cdd:TIGR03324 246 GEHFMEQGRDVLIVYDDLTQHARAYRELSLLLRRPPGREAFPGDIFYVHSRLLERSTHLN------------------EE 307
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 334 KGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNQGNRPAINVGISVSRVGGNAQLKAMKKVAGTLKIDQA 413
Cdd:TIGR03324 308 LGGGSLTALPIIETEAQNISAYIPTNLISITDGQIYLSPTLFELGVLPAVDVGKSVSRVGGKAQLAAYRAVAGDLKLAYA 387
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 414 QFRELESFSKFGGEMDAVTAFTIDKGQKNTQLLIQPQYSPMPVEEQISILYCGTQGLLKEVPLDKVHEFEARfLQELRTS 493
Cdd:TIGR03324 388 QFEELETFARFGARLDENTRKTIEHGRRIRACLKQTQSSPLTVPQQIAILLALTNGLFDGVDLDAMPEAESA-IRAAVTS 466
                         490       500
                  ....*....|....*....|....*...
gi 1489380151 494 HQRDVLDVLKTG-VINDEIRGILEKTAK 520
Cdd:TIGR03324 467 LPADLRERLQSGkKLSDEDREQILDIAR 494
F1-ATPase_alpha_CD cd01132
F1 ATP synthase alpha subunit, central domain; The F-ATPase is found in bacterial plasma ...
96-393 0e+00

F1 ATP synthase alpha subunit, central domain; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The mitochondrial extrinsic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic. Alpha and beta subunits form the globular catalytic moiety, a hexameric ring of alternating alpha and beta subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton-translocating domain.


Pssm-ID: 410876 [Multi-domain]  Cd Length: 274  Bit Score: 556.79  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  96 IASIDVSEGMIGRVIDPLGNPIDGKGEILGETcEMPLERKAPGVIFRQPVNEPLQTGIKAVDAMIPIGRGQRELIIGDRQ 175
Cdd:cd01132     1 IVEVPVGEALLGRVVDALGNPIDGKGPIQTKE-RRRVESKAPGIIPRQSVNEPLQTGIKAIDSLIPIGRGQRELIIGDRQ 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 176 TGKTSIAIDTIINQRsnyeaGNPVYCIYVAIGQKGSTVAALVNTLQEKGAMDYTIVVSATASDPAAMQYFAPFAGAAIGE 255
Cdd:cd01132    80 TGKTAIAIDTIINQK-----GKKVYCIYVAIGQKRSTVAQIVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYAGCAMGE 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 256 YFRDSGRHALVVYDDLSKQAVAYREVSLILRRPSGREAYPGDIFYLHSRLLERAAKiinqpevareMNDlpesmrdkVKG 335
Cdd:cd01132   155 YFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAK----------LSD--------ELG 216
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1489380151 336 GGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNQGNRPAINVGISVSRVG 393
Cdd:cd01132   217 GGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESELFNKGIRPAINVGLSVSRVG 274
PTZ00185 PTZ00185
ATPase alpha subunit; Provisional
63-483 1.69e-118

ATPase alpha subunit; Provisional


Pssm-ID: 140212 [Multi-domain]  Cd Length: 574  Bit Score: 360.89  E-value: 1.69e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  63 AIVMNLEEDN-VGAVLLGPTDQIKEGDTVKRTGRIASIDVSEGMIGRVIDPLGNPID------GKGEILGETCEMPLERK 135
Cdd:PTZ00185   80 GLVFNLEKDGrIGIILMDNITEVQSGQKVMATGKLLYIPVGAGVLGKVVNPLGHEVPvglltrSRALLESEQTLGKVDAG 159
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 136 APGVIFRQPVNEPLQTGIKAVDAMIPIGRGQRELIIGDRQTGKTSIAIDTIINQ-RSNYE--AGNPVYCIYVAIGQKGST 212
Cdd:PTZ00185  160 APNIVSRSPVNYNLLTGFKAVDTMIPIGRGQRELIVGDRQTGKTSIAVSTIINQvRINQQilSKNAVISIYVSIGQRCSN 239
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 213 VAALVNTLQEKGAMDYTIVVSATASDPAAMQYFAPFAGAAIGEYFRDSGRHALVVYDDLSKQAVAYREVSLILRRPSGRE 292
Cdd:PTZ00185  240 VARIHRLLRSYGALRYTTVMAATAAEPAGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQAVAYRQISLLLRRPPGRE 319
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 293 AYPGDIFYLHSRLLERAAkiinqpevaremndlpesMRDKVKGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLET 372
Cdd:PTZ00185  320 AYPGDVFYLHSRLLERAA------------------MLSPGKGGGSVTALPIVETLSNDVTAYIVTNVISITDGQIYLDT 381
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 373 DLFNQGNRPAINVGISVSRVGGNAQLKAMKKVAGTLKIDQAQFRELESFSKFGGEMDAVTAFtidKGQKNTQLLIQPQys 452
Cdd:PTZ00185  382 KLFTGGQRPAVNIGLSVSRVGSSAQNVAMKAVAGKLKGILAEYRKLAADSVGGSQVQTVPMI---RGARFVALFNQKN-- 456
                         410       420       430
                  ....*....|....*....|....*....|.
gi 1489380151 453 PMPVEEQISILYCGTQGLLKEVPLDKVHEFE 483
Cdd:PTZ00185  457 PSFFMNALVSLYACLNGYLDDVKVNYAKLYE 487
ATP-synt_ab pfam00006
ATP synthase alpha/beta family, nucleotide-binding domain; This entry includes the ATP ...
152-390 6.62e-111

ATP synthase alpha/beta family, nucleotide-binding domain; This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.


Pssm-ID: 425417 [Multi-domain]  Cd Length: 212  Bit Score: 328.16  E-value: 6.62e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 152 GIKAVDAMIPIGRGQRELIIGDRQTGKTSIAiDTIINQRSNYeagnpvYCIYVAIGQKGSTVAALVNTLQEKGAMDYTIV 231
Cdd:pfam00006   1 GIRAIDGLLPIGRGQRIGIFGGSGVGKTVLA-GMIARQASAD------VVVYALIGERGREVREFIEELLGSGALKRTVV 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 232 VSATASDPAAMQYFAPFAGAAIGEYFRDSGRHALVVYDDLSKQAVAYREVSLILRRPSGREAYPGDIFYLHSRLLERAAK 311
Cdd:pfam00006  74 VVATSDEPPLARYRAPYTALTIAEYFRDQGKDVLLIMDSLTRFAEALREISLALGEPPGREGYPPSVFSLLARLLERAGR 153
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1489380151 312 IINqpevaremndlpesmrdkvkGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNQGNRPAINVGISVS 390
Cdd:pfam00006 154 VKG--------------------KGGSITALPTVLVPGDDITDPIPDNTRSILDGQIVLSRDLAEKGHYPAIDVLASVS 212
PRK07165 PRK07165
ATP F0F1 synthase subunit alpha;
36-453 4.74e-103

ATP F0F1 synthase subunit alpha;


Pssm-ID: 235951 [Multi-domain]  Cd Length: 507  Bit Score: 318.84  E-value: 4.74e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  36 VSDGVARIYGLDNAEANELLQFDNGME--AIVMNLEEDNvgAVLL--GPTDQIKEGDTVKRTGRIASIDVSEGMIGRVID 111
Cdd:PRK07165    8 IFDYIVEVKGEYDYQQNQFFTLKNNPNvkAFVISATEDK--AYLLinNEKGKIKINDELIELNNTNKVKTSKEYFGKIID 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 112 PLGNPIDGKGEIlgETCEMPLERKAP------GVIFRQPVNEPLQTGIKAVDAMIPIGRGQRELIIGDRQTGKTSIAIDT 185
Cdd:PRK07165   86 IDGNIIYPEAQN--PLSKKFLPNTSSifnlahGLMTVKTLNEQLYTGIIAIDLLIPIGKGQRELIIGDRQTGKTHIALNT 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 186 IINQRSnyeagNPVYCIYVAIGQKGSTVAALVNTLQEKGAMDYTIVVSAtASDPAAMQYFAPFAGAAIGE---YFRDsgr 262
Cdd:PRK07165  164 IINQKN-----TNVKCIYVAIGQKRENLSRIYETLKEHDALKNTIIIDA-PSTSPYEQYLAPYVAMAHAEnisYNDD--- 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 263 hALVVYDDLSKQAVAYREVSLILRRPSGREAYPGDIFYLHSRLLERAAKIinqpevaremndlpesmrdkvKGGGSLTAL 342
Cdd:PRK07165  235 -VLIVFDDLTKHANIYREIALLTNKPVGKEAFPGDMFFAHSKLLERAGKF---------------------KNRKTITAL 292
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 343 PIIETQAGDVSAYIPTNVISITDGQIFLETDLFNQGNRPAINVGISVSRVGGNAQLKAMKKVAGTL-KIDQAQFRELEsF 421
Cdd:PRK07165  293 PILQTVDNDITSLISSNIISITDGQIVTSSDLFASGKLPAIDIDLSVSRTGSSVQSKTITKVAGEIsKIYRAYKRQLK-L 371
                         410       420       430
                  ....*....|....*....|....*....|..
gi 1489380151 422 SKFGGEMDAVTAFTIDKGQKNTQLLIQPQYSP 453
Cdd:PRK07165  372 SMLDYDLNKETSDLLFKGKMIEKMFNQKGFSL 403
RecA-like_ion-translocating_ATPases cd19476
RecA-like domain of ion-translocating ATPases; RecA-like NTPases. This family includes the ...
98-392 8.65e-102

RecA-like domain of ion-translocating ATPases; RecA-like NTPases. This family includes the NTP-binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410884 [Multi-domain]  Cd Length: 270  Bit Score: 307.07  E-value: 8.65e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  98 SIDVSEGMIGRVIDPLGNPIDGKGEILGETcEMPLERKAPGVIFRQPVNEPLQTGIKAVDAMIPIGRGQRELIIGDRQTG 177
Cdd:cd19476     1 SVPVGPELLGRILDGLGEPLDGLPPIKTKQ-RRPIHLKAPNPIERLPPEEPLQTGIKVIDLLAPYGRGQKIGIFGGSGVG 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 178 KTSIAIDTIINQRSNyEAGnpvYCIYVAIGQKGSTVAALVNTLQEKGAMDYTIVVSATASDPAAMQYFAPFAGAAIGEYF 257
Cdd:cd19476    80 KTVLAMQLARNQAKA-HAG---VVVFAGIGERGREVNDLYEEFTKSGAMERTVVVANTANDPPGARMRVPYTGLTIAEYF 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 258 RDSGRHALVVYDDLSKQAVAYREVSLILRRPSGREAYPGDIFYLHSRLLERAAKIINqpevaremndlpesmrdkvkGGG 337
Cdd:cd19476   156 RDNGQHVLLIIDDISRYAEALREMSALLGEPPGREGYPPYLFTKLATLYERAGKVKD--------------------GGG 215
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1489380151 338 SLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNQGNRPAINVGISVSRV 392
Cdd:cd19476   216 SITAIPAVSTPGDDLTDPIPDNTFAILDGQIVLSRELARKGIYPAINVLDSTSRV 270
ATP-synt_ab_C pfam00306
ATP synthase alpha/beta chain, C terminal domain;
397-521 5.96e-51

ATP synthase alpha/beta chain, C terminal domain;


Pssm-ID: 425595 [Multi-domain]  Cd Length: 126  Bit Score: 169.93  E-value: 5.96e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 397 QLKAMKKVAGTLKIDQAQFRELESFSKFGGEMDAVTAFTIDKGQKNTQLLIQPQYSPMPVEEQISILYCGTQGLLKEVPL 476
Cdd:pfam00306   1 QTKAMKKVAGSLRLDLAQYRELEAFAQFGSDLDEATKAQLDRGERLVELLKQPQYSPLSVEEQVIILYAATNGLLDDIPV 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1489380151 477 DKVHEFEARFLQELRTSHqRDVLDVL-KTGVINDEIRGILEKTAKE 521
Cdd:pfam00306  81 EKVKEFEKELLEYLRSNH-PEILEEIeETKKLSDELEEKLKEAIEE 125
ATP-synt_F1_alpha_C cd18113
F1-ATP synthase alpha (A) subunit, C-terminal domain; The alpha (A) subunit of the F1 complex ...
401-522 7.92e-51

F1-ATP synthase alpha (A) subunit, C-terminal domain; The alpha (A) subunit of the F1 complex of F0F1-ATP synthase, C-terminal domain. The F-ATP synthase (also called FoF1-ATPase) is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinsic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.


Pssm-ID: 349748 [Multi-domain]  Cd Length: 126  Bit Score: 169.85  E-value: 7.92e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 401 MKKVAGTLKIDQAQFRELESFSKFGGEMDAVTAFTIDKGQKNTQLLIQPQYSPMPVEEQISILYCGTQGLLKEVPLDKVH 480
Cdd:cd18113     1 MKKVAGSLRLDLAQYRELEAFAQFGSDLDEATKKQLERGERLTELLKQPQYSPLSVEEQVAILYAATNGYLDDIPVEKIK 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1489380151 481 EFEARFLQELRTSHQrDVLD-VLKTGVINDEIRGILEKTAKEL 522
Cdd:cd18113    81 EFEKELLEYLRSNHP-DLLEeIEKTKKLSDELEEKLKEAIEEF 122
ATPase_flagellum-secretory_path_III cd01136
Flagellum-specific ATPase/type III secretory pathway virulence-related protein; ...
98-392 1.10e-50

Flagellum-specific ATPase/type III secretory pathway virulence-related protein; Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton-driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.


Pssm-ID: 410880 [Multi-domain]  Cd Length: 265  Bit Score: 174.29  E-value: 1.10e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  98 SIDVSEGMIGRVIDPLGNPIDGKGEiLGETCEMPLERKAPGVIFRQPVNEPLQTGIKAVDAMIPIGRGQRELIIGDRQTG 177
Cdd:cd01136     1 SIPVGDGLLGRVIDALGEPLDGKGL-PDEPERRPLIAAPPNPLKRAPIEQPLPTGVRAIDGLLTCGEGQRIGIFAGSGVG 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 178 KTsiaidTIINQRSNYeAGNPVYCIyVAIGQKGSTVAALVNTLQEKGAMDYTIVVSATASDPAAMQYFAPFAGAAIGEYF 257
Cdd:cd01136    80 KS-----TLLGMIARN-TDADVNVI-ALIGERGREVREFIEKDLGEEGLKRSVLVVATSDESPLLRVRAAYTATAIAEYF 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 258 RDSGRHALVVYDDLSKQAVAYREVSLILRRPSGREAYPGDIFYLHSRLLERAAKIINqpevaremndlpesmrdkvkggG 337
Cdd:cd01136   153 RDQGKKVLLLMDSLTRFAMAQREVGLAAGEPPTRRGYPPSVFALLPRLLERAGNGEK----------------------G 210
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1489380151 338 SLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNQGNRPAINVGISVSRV 392
Cdd:cd01136   211 SITAFYTVLVEGDDFNDPIADEVRSILDGHIVLSRRLAERGHYPAIDVLASISRV 265
FliI COG1157
Flagellar biosynthesis/type III secretory pathway ATPase FliI [Cell motility, Intracellular ...
14-420 5.97e-47

Flagellar biosynthesis/type III secretory pathway ATPase FliI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440771 [Multi-domain]  Cd Length: 433  Bit Score: 169.06  E-value: 5.97e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  14 LRQQLEGIHTsikLEEVGTVLQVSDGVARIYGLDnAEANELLQFDNG----MEAIVMNLEEDNVGAVLLGPTDQIKEGDT 89
Cdd:COG1157     7 LLARLEELPP---VRVSGRVTRVVGLLIEAVGPD-ASIGELCEIETAdgrpVLAEVVGFRGDRVLLMPLGDLEGISPGAR 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  90 VKRTGRIASIDVSEGMIGRVIDPLGNPIDGKGEILGETcEMPLERKAPGVIFRQPVNEPLQTGIKAVDAMIPIGRGQRel 169
Cdd:COG1157    83 VVPTGRPLSVPVGDGLLGRVLDGLGRPLDGKGPLPGEE-RRPLDAPPPNPLERARITEPLDTGVRAIDGLLTVGRGQR-- 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 170 iIGdr---qtGKTS----IA----IDTIInqrsnyeagnpvyciyVA-IGQKGSTVAALV-NTLQEKGaMDYTIVVSATA 236
Cdd:COG1157   160 -IGifagsgvGKSTllgmIArnteADVNV----------------IAlIGERGREVREFIeDDLGEEG-LARSVVVVATS 221
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 237 SDPAAMQYFAPFAGAAIGEYFRDSGRHALVVYDDLSKQAVAYREVSLILRRPSGREAYPGDIFYLHSRLLERAAKiinqp 316
Cdd:COG1157   222 DEPPLMRLRAAYTATAIAEYFRDQGKNVLLLMDSLTRFAMAQREIGLAAGEPPATRGYPPSVFALLPRLLERAGN----- 296
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 317 evaremndlpesmrdkvKGGGSLTAL------------PIIETqagdvsayiptnVISITDGQIFLETDLFNQGNRPAIN 384
Cdd:COG1157   297 -----------------GGKGSITAFytvlvegddmndPIADA------------VRGILDGHIVLSRKLAERGHYPAID 347
                         410       420       430
                  ....*....|....*....|....*....|....*..
gi 1489380151 385 VGISVSRVggnaqlkaMKKVAGTLKIDQAQ-FRELES 420
Cdd:COG1157   348 VLASISRV--------MPDIVSPEHRALARrLRRLLA 376
fliI PRK07721
flagellar protein export ATPase FliI;
58-420 2.83e-42

flagellar protein export ATPase FliI;


Pssm-ID: 181092 [Multi-domain]  Cd Length: 438  Bit Score: 156.42  E-value: 2.83e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  58 DNGMEAIVMNLEEDNVgavLLGPTDQIKE---GDTVKRTGRIASIDVSEGMIGRVIDPLGNPIDGKGEILGETcEMPLER 134
Cdd:PRK07721   52 DKAIKAEVVGFKDEHV---LLMPYTEVAEiapGCLVEATGKPLEVKVGSGLIGQVLDALGEPLDGSALPKGLA-PVSTDQ 127
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 135 KAPGVIFRQPVNEPLQTGIKAVDAMIPIGRGQRELIIGDRQTGKTSIAidTIINQRSNYEAGnpvycIYVAIGQKGSTVA 214
Cdd:PRK07721  128 DPPNPLKRPPIREPMEVGVRAIDSLLTVGKGQRVGIFAGSGVGKSTLM--GMIARNTSADLN-----VIALIGERGREVR 200
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 215 ALV-NTLQEKGaMDYTIVVSATASDPAAMQYFAPFAGAAIGEYFRDSGRHALVVYDDLSKQAVAYREVSLILRRPSGREA 293
Cdd:PRK07721  201 EFIeRDLGPEG-LKRSIVVVATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKG 279
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 294 YPGDIFYLHSRLLERAAkiinqpevaremndlpesmrdkVKGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETD 373
Cdd:PRK07721  280 YTPSVFAILPKLLERTG----------------------TNASGSITAFYTVLVDGDDMNEPIADTVRGILDGHFVLDRQ 337
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*...
gi 1489380151 374 LFNQGNRPAINVGISVSRVggnaqlkaMKKVAGTLKIDQAQ-FRELES 420
Cdd:PRK07721  338 LANKGQYPAINVLKSVSRV--------MNHIVSPEHKEAANrFRELLS 377
PRK06820 PRK06820
EscN/YscN/HrcN family type III secretion system ATPase;
7-425 2.97e-41

EscN/YscN/HrcN family type III secretion system ATPase;


Pssm-ID: 180712 [Multi-domain]  Cd Length: 440  Bit Score: 153.82  E-value: 2.97e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151   7 VSEVSSILRQQL-------EGIHTSIKLEEVG-TVLQVSdgvariygLDNAEANELLQFD-NGMEAIVMNLEEDNVgavL 77
Cdd:PRK06820    6 IARLTPRLQQQLtrpsappEGLRYRGPIVEIGpTLLRAS--------LPGVAQGELCRIEpQGMLAEVVSIEQEMA---L 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  78 LGP---TDQIKEGDTVKRTGRIASIDVSEGMIGRVIDPLGNPIDGkGEILGETCEmPLERKAPGVIFRQPVNEPLQTGIK 154
Cdd:PRK06820   75 LSPfasSDGLRCGQWVTPLGHMHQVQVGADLAGRILDGLGAPIDG-GPPLTGQWR-ELDCPPPSPLTRQPIEQMLTTGIR 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 155 AVDAMIPIGRGQRELIIGDRQTGKTSIAidtiinqrSNYEAGNPVYCIYVA-IGQKGSTVAALVNTLQEKGAMDYTIVVS 233
Cdd:PRK06820  153 AIDGILSCGEGQRIGIFAAAGVGKSTLL--------GMLCADSAADVMVLAlIGERGREVREFLEQVLTPEARARTVVVV 224
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 234 ATASDPAAMQYFAPFAGAAIGEYFRDSGRHALVVYDDLSKQAVAYREVSLILRRPSGREAYPGDIFYLHSRLLERAAkii 313
Cdd:PRK06820  225 ATSDRPALERLKGLSTATTIAEYFRDRGKKVLLMADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTG--- 301
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 314 nqpevaremndlPESMrdkvkggGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNQGNRPAINVGISVSRVG 393
Cdd:PRK06820  302 ------------NSDR-------GSITAFYTVLVEGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIM 362
                         410       420       430
                  ....*....|....*....|....*....|..
gi 1489380151 394 GNAQLKAMKKVAGTLKIDQAQFRELESFSKFG 425
Cdd:PRK06820  363 PQIVSAGQLAMAQKLRRMLACYQEIELLVRVG 394
fliI PRK08472
flagellar protein export ATPase FliI;
14-409 8.12e-41

flagellar protein export ATPase FliI;


Pssm-ID: 181439 [Multi-domain]  Cd Length: 434  Bit Score: 152.53  E-value: 8.12e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  14 LRQQLEGIHTSIKLeevGTVLQVSDGVARIYGLDNA-------EANELLQFDNGMeaiVMNLEEDNVGAVLLGPTDQIKE 86
Cdd:PRK08472    6 LKNKLQKFNLSPRF---GSITKISPTIIEADGLNPSvgdivkiESSDNGKECLGM---VVVIEKEQFGISPFSFIEGFKI 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  87 GDTVKRTGRIASIDVSEGMIGRVIDPLGNPIDGKGEILGETcEMPLERKAPGVIFRQPVNEPLQTGIKAVDAMIPIGRGQ 166
Cdd:PRK08472   80 GDKVFISKEGLNIPVGRNLLGRVVDPLGRPIDGKGAIDYER-YAPIMKAPIAAMKRGLIDEVFSVGVKSIDGLLTCGKGQ 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 167 RELIIGDRQTGKTSIaIDTIINqrsNYEAgnPVYCIYVaIGQKGSTVAALVNTlQEKGAMDYTIVVSATASDPAAMQYFA 246
Cdd:PRK08472  159 KLGIFAGSGVGKSTL-MGMIVK---GCLA--PIKVVAL-IGERGREIPEFIEK-NLGGDLENTVIVVATSDDSPLMRKYG 230
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 247 PFAGAAIGEYFRDSGRHALVVYDDLSKQAVAYREVSLILRRPSGREAYPGDIFYLHSRLLERAAkiinqpevaremndlp 326
Cdd:PRK08472  231 AFCAMSVAEYFKNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLSLLPQLMERAG---------------- 294
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 327 esmrdKVKGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNQGNRPAINVGISVSRVGGNAQLKAMKKVAG 406
Cdd:PRK08472  295 -----KEEGKGSITAFFTVLVEGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINILNSASRVMNDIISPEHKLAAR 369

                  ...
gi 1489380151 407 TLK 409
Cdd:PRK08472  370 KFK 372
PRK06936 PRK06936
EscN/YscN/HrcN family type III secretion system ATPase;
11-468 2.28e-38

EscN/YscN/HrcN family type III secretion system ATPase;


Pssm-ID: 180762 [Multi-domain]  Cd Length: 439  Bit Score: 145.67  E-value: 2.28e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  11 SSILRQQLEGIHTSIKLEEVGTVLQVSDGVAR--IYGLDNAEANELLQFDN--GMEAIVMNLEEDNVGAVLLGPTDQIKE 86
Cdd:PRK06936    5 DYIPHHLRHAIVGSRLIQIRGRVTQVTGTILKavVPGVRIGELCYLRNPDNslSLQAEVIGFAQHQALLTPLGEMYGISS 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  87 GDTVKRTGRIASIDVSEGMIGRVIDPLGNPIDGkGEILGETCEMPLERKAPGVIFRQPVNEPLQTGIKAVDAMIPIGRGQ 166
Cdd:PRK06936   85 NTEVSPTGTMHQVGVGEHLLGRVLDGLGQPFDG-GHPPEPAAWYPVYADAPAPMSRRLIETPLSLGVRVIDGLLTCGEGQ 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 167 RELIIGDRQTGKTSIAIDTIINQRSNYeagnpvyCIYVAIGQKGSTVAALV-NTLQEKGaMDYTIVVSATASDPAAMQYF 245
Cdd:PRK06936  164 RMGIFAAAGGGKSTLLASLIRSAEVDV-------TVLALIGERGREVREFIeSDLGEEG-LRKAVLVVATSDRPSMERAK 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 246 APFAGAAIGEYFRDSGRHALVVYDDLSKQAVAYREVSLILRRPSGREAYPGDIFYLHSRLLERAAkiinqpevaremndl 325
Cdd:PRK06936  236 AGFVATSIAEYFRDQGKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAG--------------- 300
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 326 pesMRDKvkggGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNQGNRPAINVGISVSRVGGNAQLKAMKKVA 405
Cdd:PRK06936  301 ---QSDK----GSITALYTVLVEGDDMTEPVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVSKEHKTWA 373
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1489380151 406 GTLKIDQAQFRELESFSKFG----GEmDAVTAFTIDKGQKNTQLLIQPQYSPMPVEEQISILYCGTQ 468
Cdd:PRK06936  374 GRLRELLAKYEEVELLLQIGeyqkGQ-DKEADQAIERIGAIRGFLRQGTHELSHFNETLNLLETLTQ 439
PRK07594 PRK07594
EscN/YscN/HrcN family type III secretion system ATPase;
63-425 7.58e-37

EscN/YscN/HrcN family type III secretion system ATPase;


Pssm-ID: 136438 [Multi-domain]  Cd Length: 433  Bit Score: 141.63  E-value: 7.58e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  63 AIVMNLEEDNVGAVLLGPTDQIKEGDTVKRTGRIASIDVSEGMIGRVIDPLGNPIDGKGeiLGETCEMPLERKAPGVIFR 142
Cdd:PRK07594   55 AEVVGINGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRE--LPDVCWKDYDAMPPPAMVR 132
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 143 QPVNEPLQTGIKAVDAMIPIGRGQRELIIGDRQTGKTsiaidTIINQRSNyeAGNPVYCIYVAIGQKGSTVAALVNTLQE 222
Cdd:PRK07594  133 QPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKS-----TLLAMLCN--APDADSNVLVLIGERGREVREFIDFTLS 205
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 223 KGAMDYTIVVSATASDPAAMQYFAPFAGAAIGEYFRDSGRHALVVYDDLSKQAVAYREVSLILRRPSGREAYPGDIFYLH 302
Cdd:PRK07594  206 EETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSAL 285
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 303 SRLLERAAkiinqpevaremndlpesMRDKvkggGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNQGNRPA 382
Cdd:PRK07594  286 PRLLERTG------------------MGEK----GSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPA 343
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 1489380151 383 INVGISVSRVGGNAQLKAMKKVAGTLKIDQAQFRELESFSKFG 425
Cdd:PRK07594  344 IDVLATLSRVFPVVTSHEHRQLAAILRRCLALYQEVELLIRIG 386
fliI PRK06002
flagellar protein export ATPase FliI;
31-401 1.48e-36

flagellar protein export ATPase FliI;


Pssm-ID: 235666 [Multi-domain]  Cd Length: 450  Bit Score: 140.90  E-value: 1.48e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  31 GTVLQVSDGVARIYGL-DNAEANELLQFDNGMEAI---VMNLEEDNVGAVLLGPTDQIKEGDTVKRTGRiASIDVSEGMI 106
Cdd:PRK06002   28 GTVSEVTASHYRVRGLsRFVRLGDFVAIRADGGTHlgeVVRVDPDGVTVKPFEPRIEIGLGDAVFRKGP-LRIRPDPSWK 106
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 107 GRVIDPLGNPIDGKGEILGETCEMPLERKAPGVIFRQPVNEPLQTGIKAVDAMIPIGRGQRELIIGDRQTGKTSI----- 181
Cdd:PRK06002  107 GRVINALGEPIDGLGPLAPGTRPMSIDATAPPAMTRARVETGLRTGVRVIDIFTPLCAGQRIGIFAGSGVGKSTLlamla 186
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 182 ---AIDTIInqrsnyeagnpvyciyVA-IGQKGSTVAA-LVNTLQekGAMDYTIVVSATASDPAAMQYFAPFAGAAIGEY 256
Cdd:PRK06002  187 radAFDTVV----------------IAlVGERGREVREfLEDTLA--DNLKKAVAVVATSDESPMMRRLAPLTATAIAEY 248
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 257 FRDSGRHALVVYDDLSKQAVAYREVSLILRRPSGREAYPGDIFYLHSRLLERAAkiinqpevaremndlPESmrdkvKGG 336
Cdd:PRK06002  249 FRDRGENVLLIVDSVTRFAHAAREVALAAGEPPVARGYPPSVFSELPRLLERAG---------------PGA-----EGG 308
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1489380151 337 GSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNQGNRPAINVGISVSRVGGNA----------QLKAM 401
Cdd:PRK06002  309 GSITGIFSVLVDGDDHNDPVADSIRGTLDGHIVLDRAIAEQGRYPAVDPLASISRLARHAwtpeqrklvsRLKSM 383
PRK09099 PRK09099
type III secretion system ATPase; Provisional
27-425 2.09e-36

type III secretion system ATPase; Provisional


Pssm-ID: 169656 [Multi-domain]  Cd Length: 441  Bit Score: 140.29  E-value: 2.09e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  27 LEEVGTVLQVSdGVARIYGldnaEANELLQFDNGM--EAIVMNLEEDNVGAVLLGPTDQIKEGDTVKRTGRIASIDVSEG 104
Cdd:PRK09099   29 VEVIGTLLRVS-GLDVTLG----ELCELRQRDGTLlqRAEVVGFSRDVALLSPFGELGGLSRGTRVIGLGRPLSVPVGPA 103
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 105 MIGRVIDPLGNPIDGKGEILGETCEmPLERKAPGVIFRQPVNEPLQTGIKAVDAMIPIGRGQRELIIGDRQTGKTsiaid 184
Cdd:PRK09099  104 LLGRVIDGLGEPIDGGGPLDCDELV-PVIAAPPDPMSRRMVEAPLPTGVRIVDGLMTLGEGQRMGIFAPAGVGKS----- 177
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 185 TIINQRSNYEAGNpVYCIyVAIGQKGSTVAALVNTLQEKGAMDYTIVVSATaSDPAAMQYF-APFAGAAIGEYFRDSGRH 263
Cdd:PRK09099  178 TLMGMFARGTQCD-VNVI-ALIGERGREVREFIELILGEDGMARSVVVCAT-SDRSSIERAkAAYVATAIAEYFRDRGLR 254
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 264 ALVVYDDLSKQAVAYREVSLILRRPSGREAYPGDIFYLHSRLLERAAkiinqpevareMNDLpesmrdkvkggGSLTALP 343
Cdd:PRK09099  255 VLLMMDSLTRFARAQREIGLAAGEPPARRGFPPSVFAELPRLLERAG-----------MGET-----------GSITALY 312
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 344 IIETQAGDVSAYIPTNVISITDGQIFLETDLFNQGNRPAINVGISVSRVGGNAQLKAMKKVAGTLKIDQAQFRELESFSK 423
Cdd:PRK09099  313 TVLAEDESGSDPIAEEVRGILDGHMILSREIAARNQYPAIDVLGSLSRVMPQVVPREHVQAAGRLRQLLAKHREVETLLQ 392

                  ..
gi 1489380151 424 FG 425
Cdd:PRK09099  393 VG 394
PRK08149 PRK08149
FliI/YscN family ATPase;
90-464 3.76e-35

FliI/YscN family ATPase;


Pssm-ID: 236166 [Multi-domain]  Cd Length: 428  Bit Score: 136.66  E-value: 3.76e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  90 VKRTGRIASIDVSEGMIGRVIDPLGN---PIDGKGEILGETCEMPLERKAPGVIFRQPVNEPLQTGIKAVDAMIPIGRGQ 166
Cdd:PRK08149   73 LKPTGKPLSVWVGEALLGAVLDPTGKiveRFDAPPTVGPISEERVIDVAPPSYAERRPIREPLITGVRAIDGLLTCGVGQ 152
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 167 RELIIGDRQTGKTSIaIDTIINQrsnyeAGNPVYCIYVaIGQKGSTVAALVNTLQEKGAMDYTIVVSATASDPAAMQYFA 246
Cdd:PRK08149  153 RMGIFASAGCGKTSL-MNMLIEH-----SEADVFVIGL-IGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 247 PFAGAAIGEYFRDSGRHALVVYDDLSKQAVAYREVSLILRRPSGREAYPGDIFYLHSRLLERAAKIINqpevaremndlp 326
Cdd:PRK08149  226 ALVATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALAAGELPARRGYPASVFDSLPRLLERPGATLA------------ 293
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 327 esmrdkvkggGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNQGNRPAINVGISVSRVGGNAQLKAMKKVAG 406
Cdd:PRK08149  294 ----------GSITAFYTVLLESEEEPDPIGDEIRSILDGHIYLSRKLAAKGHYPAIDVLKSVSRVFGQVTDPKHRQLAA 363
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1489380151 407 TLKIDQAQFRELESFSKFG----GEmDAVTAFTIDKGQKNTQLLIQPQYSPMPVEEQISILY 464
Cdd:PRK08149  364 AFRKLLTRLEELQLFIDLGeyrrGE-NADNDRAMDKRPALEAFLKQDVAEKSSFSDTLERLN 424
V_A-ATPase_B cd01135
V/A-type ATP synthase subunit B; V/A-type ATP synthase (non-catalytic) subunit B. These ...
96-406 7.82e-35

V/A-type ATP synthase subunit B; V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. Vacuolar (V-type) ATPases play major roles in endomembrane and plasma membrane proton transport in eukaryotes. They are found in multiple intracellular membranes including vacuoles, endosomes, lysosomes, Golgi-derived vesicles, secretory vesicles, as well as the plasma membrane. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.


Pssm-ID: 410879 [Multi-domain]  Cd Length: 282  Bit Score: 131.96  E-value: 7.82e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  96 IASIDVSEGMIGRVIDPLGNPIDGKGEILGETcEMPLERKAPGVIFRQPVNEPLQTGIKAVDAMIPIGRGQRELIIGDRQ 175
Cdd:cd01135     1 VLKLPVSEDMLGRIFNGSGKPIDGGPPILPED-YLDINGPPINPVARIYPEEMIQTGISAIDVMNTLVRGQKLPIFSGSG 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 176 TGKTSIAIdTIINQRSNYEAGNPVYCIYVAIGQKGSTVAALVNTLQEKGAMDYTIVVSATASDPAAMQYFAPFAGAAIGE 255
Cdd:cd01135    80 LPHNELAA-QIARQAGVVGSEENFAIVFAAMGVTMEEARFFKDDFEETGALERVVLFLNLANDPTIERIITPRMALTTAE 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 256 YFR-DSGRHALVVYDDLSKQAVAYREVSLILRRPSGREAYPGdifYLHSRL---LERAAKIINQPevaremndlpesmrd 331
Cdd:cd01135   159 YLAyEKGKHVLVILTDMTNYAEALREVSAAREEVPGRRGYPG---YMYTDLatiYERAGRVEGRK--------------- 220
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1489380151 332 kvkggGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNQGNRPAINVGISVSRVggnaqlkaMKKVAG 406
Cdd:cd01135   221 -----GSITQIPILTMPNDDITHPIPDLTGYITEGQIYLDRDLHNKGIYPPIDVLPSLSRL--------MKSGIG 282
fliI PRK08972
flagellar protein export ATPase FliI;
54-420 4.21e-34

flagellar protein export ATPase FliI;


Pssm-ID: 181599 [Multi-domain]  Cd Length: 444  Bit Score: 134.06  E-value: 4.21e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  54 LLQFDNG-MEAIVMNLEEDNVgavLLGPTDQIK---EGDTVKRTGRIASIDVSEGMIGRVIDPLGNPIDGKGEILGETcE 129
Cdd:PRK08972   51 SIETMAGeLEAEVVGFDGDLL---YLMPIEELRgvlPGARVTPLGEQSGLPVGMSLLGRVIDGVGNPLDGLGPIYTDQ-R 126
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 130 MPLERKAPGVIFRQPVNEPLQTGIKAVDAMIPIGRGQRELIIGDRQTGKtSIAIDTIINqrsnyeaGNPVYCIYVA-IGQ 208
Cdd:PRK08972  127 ASRHSPPINPLSRRPITEPLDVGVRAINAMLTVGKGQRMGLFAGSGVGK-SVLLGMMTR-------GTTADVIVVGlVGE 198
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 209 KGSTVAALV-NTLQEKGaMDYTIVVSATASDPAAMQYFAPFAGAAIGEYFRDSGRHALVVYDDLSKQAVAYREVSLILRR 287
Cdd:PRK08972  199 RGREVKEFIeEILGEEG-RARSVVVAAPADTSPLMRLKGCETATTIAEYFRDQGLNVLLLMDSLTRYAQAQREIALAVGE 277
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 288 PSGREAYPGDIFYLHSRLLERAAkiiNQPEvaremndlpesmrdkvkGGGSLTALPIIETQAGDVSAYIPTNVISITDGQ 367
Cdd:PRK08972  278 PPATKGYPPSVFAKLPALVERAG---NGGP-----------------GQGSITAFYTVLTEGDDLQDPIADASRAILDGH 337
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1489380151 368 IFLETDLFNQGNRPAINVGISVSRVG----GNAQLKAMKKVAGTLKIDQaQFRELES 420
Cdd:PRK08972  338 IVLSRELADSGHYPAIDIEASISRVMpmviSEEHLEAMRRVKQVYSLYQ-QNRDLIS 393
PRK04196 PRK04196
V-type ATP synthase subunit B; Provisional
65-391 2.76e-33

V-type ATP synthase subunit B; Provisional


Pssm-ID: 235251 [Multi-domain]  Cd Length: 460  Bit Score: 131.87  E-value: 2.76e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  65 VMNLEEDNVGAVLLGPTDQIKEGDT-VKRTGRIASIDVSEGMIGRVIDPLGNPIDGKGEILGEtCEMPLERKAPGVIFRQ 143
Cdd:PRK04196   43 VLEVSEDKAVVQVFEGTTGLDLKDTkVRFTGEPLKLPVSEDMLGRIFDGLGRPIDGGPEIIPE-KRLDINGAPINPVARE 121
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 144 PVNEPLQTGIKAVDAMIPIGRGQRELIIGDRQTGKTSIAIDtIINQRSNYEAGNPVYCIYVAIGQKGSTVAALVNTLQEK 223
Cdd:PRK04196  122 YPEEFIQTGISAIDGLNTLVRGQKLPIFSGSGLPHNELAAQ-IARQAKVLGEEENFAVVFAAMGITFEEANFFMEDFEET 200
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 224 GAMDYTIVVSATASDPAAMQYFAPFAGAAIGEYFR-DSGRHALVVYDDLSKQAVAYREVSLILRRPSGREAYPGdifYLH 302
Cdd:PRK04196  201 GALERSVVFLNLADDPAIERILTPRMALTAAEYLAfEKGMHVLVILTDMTNYCEALREISAAREEVPGRRGYPG---YMY 277
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 303 SRL---LERAAKIINQPevaremndlpesmrdkvkggGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNQGN 379
Cdd:PRK04196  278 TDLatiYERAGRIKGKK--------------------GSITQIPILTMPDDDITHPIPDLTGYITEGQIVLSRELHRKGI 337
                         330
                  ....*....|..
gi 1489380151 380 RPAINVGISVSR 391
Cdd:PRK04196  338 YPPIDVLPSLSR 349
fliI PRK05688
flagellar protein export ATPase FliI;
61-450 2.97e-33

flagellar protein export ATPase FliI;


Pssm-ID: 168181 [Multi-domain]  Cd Length: 451  Bit Score: 131.78  E-value: 2.97e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  61 MEAIVMNLEEDNVGAVLLGPTDQIKEGDTVKRTGRIASIDVSEGMIGRVIDPLGNPIDGKGEILGETcEMPLERKAPGVI 140
Cdd:PRK05688   65 VEAEVMGFSGDKVFLMPVGSVAGIAPGARVVPLADTGRLPMGMSMLGRVLDGAGRALDGKGPMKAED-WVPMDGPTINPL 143
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 141 FRQPVNEPLQTGIKAVDAMIPIGRGQRELIIGDRQTGKTsiaidTIINQRSNYEAGNpvycIYVA--IGQKGSTVAALV- 217
Cdd:PRK05688  144 NRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKS-----VLLGMMTRFTEAD----IIVVglIGERGREVKEFIe 214
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 218 NTLQEKGaMDYTIVVSATASDPAAMQYFAPFAGAAIGEYFRDSGRHALVVYDDLSKQAVAYREVSLILRRPSGREAYPGD 297
Cdd:PRK05688  215 HILGEEG-LKRSVVVASPADDAPLMRLRAAMYCTRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPS 293
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 298 IFYLHSRLLERAAkiinqpevaremndlpesmrDKVKGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNQ 377
Cdd:PRK05688  294 VFAKLPKLVERAG--------------------NAEPGGGSITAFYTVLSEGDDQQDPIADSARGVLDGHIVLSRRLAEE 353
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1489380151 378 GNRPAINVGISVSRVggnaqlkaMKKVAGTLKIDQAQ-FRELESFSKFGGEMDAVTAFTiDKGQKNTQLLIQPQ 450
Cdd:PRK05688  354 GHYPAIDIEASISRV--------MPQVVDPEHLRRAQrFKQLWSRYQQSRDLISVGAYV-AGGDPETDLAIARF 418
PRK05922 PRK05922
type III secretion system ATPase; Validated
14-391 8.43e-32

type III secretion system ATPase; Validated


Pssm-ID: 102061 [Multi-domain]  Cd Length: 434  Bit Score: 127.33  E-value: 8.43e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  14 LRQQLEGIHTSIKLEEVGTVLQVSDGVARIYGLdNAEANELLQF----DNGMEAIVMNLEEDNVGAVLLGPTDQIKEGDT 89
Cdd:PRK05922    4 LQEEKLLIHQWQPYRECGLLSRVSGNLLEAQGL-SACLGELCQIslskSPPILAEVIGFHNRTTLLMSLSPIHYVALGAE 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  90 VKRTGRIASIDVSEGMIGRVIDPLGNPIDGKgEILGETCEMPLERKAPGVIFRQPVNEPLQTGIKAVDAMIPIGRGQREL 169
Cdd:PRK05922   83 VLPLRRPPSLHLSDHLLGRVLDGFGNPLDGK-EQLPKTHLKPLFSSPPSPMSRQPIQEIFPTGIKAIDAFLTLGKGQRIG 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 170 IIGDRQTGKTSIAIDTIINQRSNYEagnpvycIYVAIGQKGSTVAALVNTLQEKGAMDYTIVVSATASDPAAMQYFAPFA 249
Cdd:PRK05922  162 VFSEPGSGKSSLLSTIAKGSKSTIN-------VIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRA 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 250 GAAIGEYFRDSGRHALVVYDDLSKQAVAYREVSLILRRPSGREAYPGDIFYLHSRLLERAAKiinqpevaremNDlpesm 329
Cdd:PRK05922  235 AMTIAEYFRDQGHRVLFIMDSLSRWIAALQEVALARGETLSAHHYAASVFHHVSEFTERAGN-----------ND----- 298
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1489380151 330 rdkvkgGGSLTALPIIETQAGDVSAYIPTnVISITDGQIFLEtdlfNQGN---RPAINVGISVSR 391
Cdd:PRK05922  299 ------KGSITALYAILHYPNHPDIFTDY-LKSLLDGHFFLT----PQGKalaSPPIDILTSLSR 352
fliI PRK07196
flagellar protein export ATPase FliI;
101-463 1.34e-31

flagellar protein export ATPase FliI;


Pssm-ID: 180875 [Multi-domain]  Cd Length: 434  Bit Score: 126.54  E-value: 1.34e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 101 VSEGMIGRVIDPLGNPIDGKGEILGETcemPLERKAPGV--IFRQPVNEPLQTGIKAVDAMIPIGRGQRELIIGDRQTGK 178
Cdd:PRK07196   92 IGDSWLGRVINGLGEPLDGKGQLGGST---PLQQQLPQIhpLQRRAVDTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGK 168
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 179 TsiaidTIINQRSNYEAGNPVycIYVAIGQKGSTVAALV-NTLQEKGaMDYTIVVSATASDPAAMQYFAPFAGAAIGEYF 257
Cdd:PRK07196  169 S-----VLLGMITRYTQADVV--VVGLIGERGREVKEFIeHSLQAAG-MAKSVVVAAPADESPLMRIKATELCHAIATYY 240
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 258 RDSGRHALVVYDDLSKQAVAYREVSLILRRPSGREAYPGDIFYLHSRLLERAAkiinqpevaremndlpesmrdKVKGGG 337
Cdd:PRK07196  241 RDKGHDVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAG---------------------NSSGNG 299
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 338 SLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNQGNRPAINVGISVSR----VGGNAQLKAMKKVAGTLKiDQA 413
Cdd:PRK07196  300 TMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLSRKLAEAGHYPAIDISQSISRcmsqVIGSQQAKAASLLKQCYA-DYM 378
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 1489380151 414 QFRELESFSKFGGEMDAVTAFTIDKGQKNTQLLIQPQYSPMPVEEQISIL 463
Cdd:PRK07196  379 AIKPLIPLGGYVAGADPMADQAVHYYPAITQFLRQEVGHPALFSASVEQL 428
ATP-synt_F1_alpha_N cd18116
F1-ATP synthase alpha (A) subunit, N-terminal domain; The alpha (A) subunit of the F1 complex ...
29-95 4.62e-31

F1-ATP synthase alpha (A) subunit, N-terminal domain; The alpha (A) subunit of the F1 complex of FoF1-ATP synthase, N-terminal domain. The F-ATP synthase (also called FoF1-ATPase) is found in bacterial plasma membranes, in mitochondrial inner membranes, and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinsic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.


Pssm-ID: 349740 [Multi-domain]  Cd Length: 67  Bit Score: 114.47  E-value: 4.62e-31
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1489380151  29 EVGTVLQVSDGVARIYGLDNAEANELLQFDNGMEAIVMNLEEDNVGAVLLGPTDQIKEGDTVKRTGR 95
Cdd:cd18116     1 EVGRVLSVGDGIARVYGLPNVMAGELVEFPGGVKGMALNLEEDNVGVVLLGDYKLIKEGDSVKRTGR 67
fliI PRK08927
flagellar protein export ATPase FliI;
75-391 2.12e-30

flagellar protein export ATPase FliI;


Pssm-ID: 236351 [Multi-domain]  Cd Length: 442  Bit Score: 123.17  E-value: 2.12e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  75 AVLL--GPTDQIKEGDTVKRTGRIASIDVSEGMIGRVIDPLGNPIDGKGEILGETCEMPLERKAPGVIFRQPVNEPLQTG 152
Cdd:PRK08927   66 ALLMpfGPLEGVRRGCRAVIANAAAAVRPSRAWLGRVVNALGEPIDGKGPLPQGPVPYPLRAPPPPAHSRARVGEPLDLG 145
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 153 IKAVDAMIPIGRGQRELIIGDRQTGKTSI--------AIDTIInqrsnyeagnpvycIYVaIGQKGSTVAALV-NTLQEK 223
Cdd:PRK08927  146 VRALNTFLTCCRGQRMGIFAGSGVGKSVLlsmlarnaDADVSV--------------IGL-IGERGREVQEFLqDDLGPE 210
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 224 GaMDYTIVVSATASDPAAMQYFAPFAGAAIGEYFRDSGRHALVVYDDLSKQAVAYREVSLILRRPSGREAYPGDIFYLHS 303
Cdd:PRK08927  211 G-LARSVVVVATSDEPALMRRQAAYLTLAIAEYFRDQGKDVLCLMDSVTRFAMAQREIGLSAGEPPTTKGYTPTVFAELP 289
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 304 RLLERAAkiinqPEVAREmndlpesmrdkvkggGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNQGNRPAI 383
Cdd:PRK08927  290 RLLERAG-----PGPIGE---------------GTITGLFTVLVDGDDHNEPVADAVRGILDGHIVMERAIAERGRYPAI 349

                  ....*...
gi 1489380151 384 NVGISVSR 391
Cdd:PRK08927  350 NVLKSVSR 357
atpD TIGR01039
ATP synthase, F1 beta subunit; The sequences of ATP synthase F1 alpha and beta subunits are ...
68-484 4.96e-28

ATP synthase, F1 beta subunit; The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 211621 [Multi-domain]  Cd Length: 461  Bit Score: 116.74  E-value: 4.96e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  68 LEEDNVGAVLLGPTDQIKEGDTVKRTGRIASIDVSEGMIGRVIDPLGNPIDGKGEIlGETCEMPLERKAPGVIFRQPVNE 147
Cdd:TIGR01039  47 LGDDTVRTIAMGSTDGLVRGLEVIDTGAPISVPVGKETLGRIFNVLGEPIDEKGPI-PAKERWPIHRKAPSFEEQSTKVE 125
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 148 PLQTGIKAVDAMIPIGRGQRELIIGDRQTGKTSIAIDTIINQRSNYEAgnpvYCIYVAIGQKGSTVAALVNTLQEKGAMD 227
Cdd:TIGR01039 126 ILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGG----YSVFAGVGERTREGNDLYHEMKESGVID 201
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 228 YTIVVSATASDPAAMQYFAPFAGAAIGEYFRD-SGRHALVVYDDLSKQAVAYREVSLILRRpsgreaYPGDIFYlhsrll 306
Cdd:TIGR01039 202 KTALVYGQMNEPPGARMRVALTGLTMAEYFRDeQGQDVLLFIDNIFRFTQAGSEVSALLGR------MPSAVGY------ 269
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 307 eraakiinQPEVAREMNDLPEsmRDKVKGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNQGNRPAINVG 386
Cdd:TIGR01039 270 --------QPTLATEMGELQE--RITSTKTGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRKIAELGIYPAVDPL 339
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 387 ISVSR-----VGGNAQLKAMKKVAGTLKidqaQFRELESFSKFGGeMDAVT---AFTIDKGQKNTQLLIQpqysPMPVEE 458
Cdd:TIGR01039 340 DSTSRlldpsVVGEEHYDVARGVQQILQ----RYKELQDIIAILG-MDELSeedKLTVERARRIQRFLSQ----PFFVAE 410
                         410       420
                  ....*....|....*....|....*..
gi 1489380151 459 QISilycGTQGllKEVPL-DKVHEFEA 484
Cdd:TIGR01039 411 VFT----GQPG--KYVPLkDTIRGFKE 431
V-ATPase_V1_B TIGR01040
V-type (H+)-ATPase V1, B subunit; This models eukaryotic vacuolar (H+)-ATPase that is ...
89-401 5.60e-25

V-type (H+)-ATPase V1, B subunit; This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273410 [Multi-domain]  Cd Length: 466  Bit Score: 107.89  E-value: 5.60e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  89 TVKRTGRIASIDVSEGMIGRVIDPLGNPIDGKGEILGETCempLErkapgvIFRQPVN--------EPLQTGIKAVDAMI 160
Cdd:TIGR01040  66 TCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPVLAEDY---LD------INGQPINpyariypeEMIQTGISAIDVMN 136
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 161 PIGRGQRELIIGD-------------RQTGKTSIAIDTIINQRSNYEAgnpvyCIYVAIGQKGSTVAALVNTLQEKGAMD 227
Cdd:TIGR01040 137 SIARGQKIPIFSAaglphneiaaqicRQAGLVKLPTKDVHDGHEDNFA-----IVFAAMGVNMETARFFKQDFEENGSME 211
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 228 YTIVVSATASDPAAMQYFAPFAGAAIGEYFR-DSGRHALVVYDDLSKQAVAYREVSLILRRPSGREAYPGDIFYLHSRLL 306
Cdd:TIGR01040 212 RVCLFLNLANDPTIERIITPRLALTTAEYLAyQCEKHVLVILTDMSSYADALREVSAAREEVPGRRGFPGYMYTDLATIY 291
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 307 ERAAKIINQPevaremndlpesmrdkvkggGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNQGNRPAINVG 386
Cdd:TIGR01040 292 ERAGRVEGRN--------------------GSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVL 351
                         330
                  ....*....|....*
gi 1489380151 387 ISVSRVGGNAQLKAM 401
Cdd:TIGR01040 352 PSLSRLMKSAIGEGM 366
fliI PRK06793
flagellar protein export ATPase FliI;
65-425 1.62e-24

flagellar protein export ATPase FliI;


Pssm-ID: 180696 [Multi-domain]  Cd Length: 432  Bit Score: 105.83  E-value: 1.62e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  65 VMNLEEDNVGAVLLGPTDQIKEGDTVKRTGRIASIDVSEGMIGRVIDplgnpidGKGEILGETCEM-PLER---KAPGV- 139
Cdd:PRK06793   57 VIAIEKENNMLLPFEQTEKVCYGDSVTLIAEDVVIPRGNHLLGKVLS-------ANGEVLNEEAENiPLQKiklDAPPIh 129
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 140 -IFRQPVNEPLQTGIKAVDAMIPIGRGQRELIIGDRQTGKTSIAIDTIINQRSNYEagnpvycIYVAIGQKGSTVAALV- 217
Cdd:PRK06793  130 aFEREEITDVFETGIKSIDSMLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADIN-------VISLVGERGREVKDFIr 202
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 218 NTLQEKGaMDYTIVVSATASDPAAMQYFAPFAGAAIGEYFRDSGRHALVVYDDLSKQAVAYREVSLILRR-PSGreaypG 296
Cdd:PRK06793  203 KELGEEG-MRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKElPIG-----G 276
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 297 DIFYLHS---RLLERAAKIINqpevaremndlpesmrdkvkggGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETD 373
Cdd:PRK06793  277 KTLLMESymkKLLERSGKTQK----------------------GSITGIYTVLVDGDDLNGPVPDLARGILDGHIVLKRE 334
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1489380151 374 LFNQGNRPAINVGISVSRVGGNAQLKAMKKVAGTLKIDQAQFRELESFSKFG 425
Cdd:PRK06793  335 LATLSHYPAISVLDSVSRIMEEIVSPNHWQLANEMRKILSIYKENELYFKLG 386
fliI PRK07960
flagellum-specific ATP synthase FliI;
105-421 8.84e-24

flagellum-specific ATP synthase FliI;


Pssm-ID: 181182 [Multi-domain]  Cd Length: 455  Bit Score: 104.09  E-value: 8.84e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 105 MIGRVIDPLGNPIDGKGEilGETCE-MPLERKAPGVIFRQPVNEPLQTGIKAVDAMIPIGRGQRELIIGDRQTGKTsiai 183
Cdd:PRK07960  116 LLGRVLDGSGKPLDGLPA--PDTGEtGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKS---- 189
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 184 dTIINQRSNYEAGNpvyCIYVA-IGQKGSTVAALV-NTLQEKG-AMDYTIVVSATASDPAAMQyfapfaGAA----IGEY 256
Cdd:PRK07960  190 -VLLGMMARYTQAD---VIVVGlIGERGREVKDFIeNILGAEGrARSVVIAAPADVSPLLRMQ------GAAyatrIAED 259
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 257 FRDSGRHALVVYDDLSKQAVAYREVSLILRRPSGREAYPGDIFYLHSRLLERAAkiinqpevaremndlpesmrDKVKGG 336
Cdd:PRK07960  260 FRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAG--------------------NGISGG 319
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 337 GSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNQGNRPAINVGISVSRvggnaqlkAMkkvagTLKIDQAQFR 416
Cdd:PRK07960  320 GSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISR--------AM-----TALIDEQHYA 386

                  ....*
gi 1489380151 417 ELESF 421
Cdd:PRK07960  387 RVRQF 391
V_A-ATPase_A cd01134
V/A-type ATP synthase catalytic subunit A; V/A-type ATP synthase catalytic subunit A. These ...
98-391 6.82e-22

V/A-type ATP synthase catalytic subunit A; V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. Vacuolar (V-type) ATPases play major roles in endomembrane and plasma membrane proton transport in eukaryotes. They are found in multiple intracellular membranes including vacuoles, endosomes, lysosomes, Golgi-derived vesicles, secretory vesicles, as well as the plasma membrane. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.


Pssm-ID: 410878 [Multi-domain]  Cd Length: 288  Bit Score: 95.72  E-value: 6.82e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  98 SIDVSEGMIGRVIDPLGNPIdgkgEILGETC-----------EMPLERKAPgVIFRQPVNEPLQTGIKAVDAMIPIGRGQ 166
Cdd:cd01134     3 SVELGPGLLGSIFDGIQRPL----EVIAETGsifiprgvnvqRWPVRQPRP-VKEKLPPNVPLLTGQRVLDTLFPVAKGG 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 167 RELIIGDRQTGKTsiaidTIINQRSNYEAGNPVycIYVAIGQKGSTVA-------ALVNTLQEKGAMDYTIVVSATASDP 239
Cdd:cd01134    78 TAAIPGPFGCGKT-----VISQSLSKWSNSDVV--IYVGCGERGNEMAevleefpELKDPITGESLMERTVLIANTSNMP 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 240 AAMQYFAPFAGAAIGEYFRDSGRHALVVYDDLSKQAVAYREVSLILRRPSGREAYPGdifYLHSRL---LERAAKIINQP 316
Cdd:cd01134   151 VAAREASIYTGITIAEYFRDMGYNVSLMADSTSRWAEALREISGRLEEMPAEEGYPA---YLGARLaefYERAGRVRCLG 227
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1489380151 317 EVAREmndlpesmrdkvkggGSLTALPIIETQAGDVSAYIPTNVISITdgQIF--LETDLFNQGNRPAINVGISVSR 391
Cdd:cd01134   228 SPGRE---------------GSVTIVGAVSPPGGDFSEPVTQATLRIV--QVFwgLDKKLAQRRHFPSINWLISYSK 287
PRK02118 PRK02118
V-type ATP synthase subunit B; Provisional
58-373 2.36e-19

V-type ATP synthase subunit B; Provisional


Pssm-ID: 179373 [Multi-domain]  Cd Length: 436  Bit Score: 90.48  E-value: 2.36e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  58 DNGMEAIVMNLEEDNVGAVLLGPTDQIKEGDTVKRTGRIASIDVSEGMIGRVIDPLGNPIDGKGEILGETCEM------P 131
Cdd:PRK02118   35 DGSSLAQVIRLDGDKVTLQVFGGTRGISTGDEVVFLGRPMQVTYSESLLGRRFNGSGKPIDGGPELEGEPIEIggpsvnP 114
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 132 LERKAPgvifrqpvNEPLQTGIKAVDAMIPIGRGQRELIIGDrqTGKTSIAIDTIINQRSNYEAgnpvyCIYVAIGQKGS 211
Cdd:PRK02118  115 VKRIVP--------REMIRTGIPMIDVFNTLVESQKIPIFSV--SGEPYNALLARIALQAEADI-----IILGGMGLTFD 179
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 212 TVAALVNTLQEKGAMDYTIVVSATASDPAAMQYFAPFAGAAIGEYFR-DSGRHALVVYDDLSKQAVAYREVSLILRR-PS 289
Cdd:PRK02118  180 DYLFFKDTFENAGALDRTVMFIHTASDPPVECLLVPDMALAVAEKFAlEGKKKVLVLLTDMTNFADALKEISITMDQiPS 259
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 290 GReAYPGDifyLHSRLLERAAKIINqpevaremndlpesmrdkVKGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIF 369
Cdd:PRK02118  260 NR-GYPGS---LYSDLASRYEKAVD------------------FEDGGSITIIAVTTMPGDDVTHPVPDNTGYITEGQFY 317

                  ....
gi 1489380151 370 LETD 373
Cdd:PRK02118  318 LRRG 321
F1-ATPase_beta_CD cd01133
F1 ATP synthase beta subunit, central domain; The F-ATPase is found in bacterial plasma ...
98-392 9.62e-16

F1 ATP synthase beta subunit, central domain; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The mitochondrial extrinsic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic. Alpha and beta subunits form the globular catalytic moiety, a hexameric ring of alternating alpha and beta subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton-translocating domain.


Pssm-ID: 410877 [Multi-domain]  Cd Length: 277  Bit Score: 77.65  E-value: 9.62e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  98 SIDVSEGMIGRVIDPLGNPIDGKGEIlGETCEMPLERKAPGVIFRQPVNEPLQTGIKAVDAMIPIGRGQRELIIGDRQTG 177
Cdd:cd01133     1 SVPVGEETLGRIFNVLGEPIDERGPI-KAKERWPIHREAPEFVELSTEQEILETGIKVVDLLAPYAKGGKIGLFGGAGVG 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 178 KTSIaIDTIINqrsNYEAGNPVYCIYVAIGQKGSTVAALVNTLQEKG-----AMDYTIVVSATASDPAAMQYFAPFAGAA 252
Cdd:cd01133    80 KTVL-IMELIN---NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGvinldGLSKVALVYGQMNEPPGARARVALTGLT 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 253 IGEYFRDS-GRHALVVYDDLSKQAVAYREVSLIL-RRPSgREAYpgdifylhsrlleraakiinQPEVAREMNDLPEsmR 330
Cdd:cd01133   156 MAEYFRDEeGQDVLLFIDNIFRFTQAGSEVSALLgRIPS-AVGY--------------------QPTLATEMGSLQE--R 212
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1489380151 331 DKVKGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNQGNRPAINVGISVSRV 392
Cdd:cd01133   213 ITSTKKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGIAELGIYPAVDPLDSTSRI 274
ATP-synt_ab_N pfam02874
ATP synthase alpha/beta family, beta-barrel domain; This family includes the ATP synthase ...
28-94 8.37e-15

ATP synthase alpha/beta family, beta-barrel domain; This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella.


Pssm-ID: 427029 [Multi-domain]  Cd Length: 69  Bit Score: 69.11  E-value: 8.37e-15
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1489380151  28 EEVGTVLQVSDGVARIYGLDNAEANELLQFDNGMEAIVMNLEEDNVGAVLLGPTDQIKEGDTVKRTG 94
Cdd:pfam02874   3 QVIGPVVDVEFGIGRLPGLLNALEVELVEFGSLVLGEVLNLGGDKVRVQVFGGTSGLSRGDEVKRTG 69
PRK14698 PRK14698
V-type ATP synthase subunit A; Provisional
202-384 3.78e-11

V-type ATP synthase subunit A; Provisional


Pssm-ID: 184795 [Multi-domain]  Cd Length: 1017  Bit Score: 65.81  E-value: 3.78e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  202 IYVAIGQKGSTVAALVNTLQE-------KGAMDYTIVVSATASDPAAMQYFAPFAGAAIGEYFRDSGRHALVVYDDLSKQ 274
Cdd:PRK14698   686 IYIGCGERGNEMTDVLEEFPKlkdpktgKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRW 765
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  275 AVAYREVSLILRRPSGREAYPGdifYLHSRL---LERAAKIINQPEVAREmndlpesmrdkvkggGSLTALPIIETQAGD 351
Cdd:PRK14698   766 AEALREISGRLEEMPGEEGYPA---YLASKLaefYERAGRVVTLGSDYRV---------------GSVSVIGAVSPPGGD 827
                          170       180       190
                   ....*....|....*....|....*....|...
gi 1489380151  352 VSAYIPTNVISITDGQIFLETDLFNQGNRPAIN 384
Cdd:PRK14698   828 FSEPVVQNTLRVVKVFWALDADLARRRHFPAIN 860
atpB CHL00060
ATP synthase CF1 beta subunit
65-419 5.35e-11

ATP synthase CF1 beta subunit


Pssm-ID: 214349 [Multi-domain]  Cd Length: 494  Bit Score: 64.68  E-value: 5.35e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151  65 VMNLEEDN-VGAVLLGPTDQIKEGDTVKRTGRIASIDVSEGMIGRVIDPLGNPIDGKGEILGETcEMPLERKAPGviFRQ 143
Cdd:CHL00060   61 VQQLLGNNrVRAVAMSATDGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTRT-TSPIHRSAPA--FIQ 137
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 144 PVNEP--LQTGIKAVDAMIPIGRGQRELIIGDRQTGKTSIAIDTIIN---------------QRSnyEAGNPVYciyvaI 206
Cdd:CHL00060  138 LDTKLsiFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNiakahggvsvfggvgERT--REGNDLY-----M 210
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 207 GQKGSTVAALVNTLQEKGAMDYtivvsATASDPAAMQYFAPFAGAAIGEYFRDSGRH-ALVVYDDLSKQAVAYREVSLIL 285
Cdd:CHL00060  211 EMKESGVINEQNIAESKVALVY-----GQMNEPPGARMRVGLTALTMAEYFRDVNKQdVLLFIDNIFRFVQAGSEVSALL 285
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 286 -RRPSGreaypgdIFYlhsrlleraakiinQPEVAREMNDLPE---SMRDkvkggGSLTALPIIETQAGDVSAYIPTNVI 361
Cdd:CHL00060  286 gRMPSA-------VGY--------------QPTLSTEMGSLQEritSTKE-----GSITSIQAVYVPADDLTDPAPATTF 339
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1489380151 362 SITDGQIFLETDLFNQGNRPAINVGISVS-----RVGGNAQLKAMKKVAGTLKidqaQFRELE 419
Cdd:CHL00060  340 AHLDATTVLSRGLAAKGIYPAVDPLDSTStmlqpRIVGEEHYETAQRVKQTLQ----RYKELQ 398
PRK04192 PRK04192
V-type ATP synthase subunit A; Provisional
142-314 6.99e-11

V-type ATP synthase subunit A; Provisional


Pssm-ID: 235248 [Multi-domain]  Cd Length: 586  Bit Score: 64.80  E-value: 6.99e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 142 RQPVNEPLQTGIKAVDAMIPIGRGQRELIIGDRQTGKTsiaidTIINQRSNYEAGNPVycIYVAIGQKGSTVaalVNTLQ 221
Cdd:PRK04192  204 KLPPVEPLITGQRVIDTFFPVAKGGTAAIPGPFGSGKT-----VTQHQLAKWADADIV--IYVGCGERGNEM---TEVLE 273
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1489380151 222 E----------KGAMDYTIVVSATASDPAAMQYFAPFAGAAIGEYFRDSGRHALVVYDDLSKQAVAYREVSLILRRPSGR 291
Cdd:PRK04192  274 EfpelidpktgRPLMERTVLIANTSNMPVAAREASIYTGITIAEYYRDMGYDVLLMADSTSRWAEALREISGRLEEMPGE 353
                         170       180
                  ....*....|....*....|....*.
gi 1489380151 292 EAYPGdifYLHSRL---LERAAKIIN 314
Cdd:PRK04192  354 EGYPA---YLASRLaefYERAGRVKT 376
ATP-synt_F1_V1_A1_AB_FliI_C cd01429
ATP synthase, alpha/beta subunits of F1/V1/A1 complex, flagellum-specific ATPase FliI, ...
401-467 1.54e-10

ATP synthase, alpha/beta subunits of F1/V1/A1 complex, flagellum-specific ATPase FliI, C-terminal domain; The alpha and beta (also called A and B) subunits are primarily found in the F1, V1, and A1 complexes of F-, V- and A-type family of ATPases with rotary motors. These ion-transporting rotary ATPases are composed of two linked multi-subunit complexes: the F1, V1, and A1 complexes contain three copies each of the alpha and beta subunits that form the soluble catalytic core, which is involved in ATP synthesis/hydrolysis, and the Fo, Vo, or Ao complex that forms the membrane-embedded proton pore. The F-ATP synthases (also called FoF1-ATPases) are found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts, or in the plasma membranes of bacteria. F-ATPases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis. The A-ATP synthases (AoA1-ATPases), a different class of proton-translocating ATP synthases, are found in archaea and function like F-ATP synthases. Structurally, however, the A-ATP synthases are more closely related to the V-ATP synthases (vacuolar VoV1-ATPases), which are a proton-translocating ATPase responsible for acidification of eukaryotic intracellular compartments and for ATP synthesis in archaea and some eubacteria. Collectively, F-, V-, and A-type synthases can function in both ATP synthesis and hydrolysis modes. This family also includes the flagellum-specific ATPase/type III secretory pathway virulence-related protein, which shows extensive similarity to the alpha and beta subunits of F1-ATP synthase.


Pssm-ID: 349744 [Multi-domain]  Cd Length: 70  Bit Score: 57.07  E-value: 1.54e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1489380151 401 MKKVAGTLKIDQAQFRELESFSKFGG--EMDAVTAFTIDKGQKNTQLLIQPQYSPMPVEEQISILYCGT 467
Cdd:cd01429     1 HKAVARGFKAILAQYRELRDIVAIVGddALSEADKKTLSRGRRLEEFLQQGQFEPETIEDTLEKLYPIK 69
ATP-synt_F1_V1_A1_AB_FliI_N cd01426
ATP synthase, alpha/beta subunits of F1/V1/A1 complex, flagellum-specific ATPase FliI, ...
31-95 3.28e-04

ATP synthase, alpha/beta subunits of F1/V1/A1 complex, flagellum-specific ATPase FliI, N-terminal domain; The alpha and beta (or A and B) subunits are primarily found in the F1, V1, and A1 complexes of the F-, V- and A-type family of ATPases with rotary motors. These ion-transporting rotary ATPases are composed of two linked multi-subunit complexes: the F1, V1, or A1 complex which contains three copies each of the alpha and beta subunits that form the soluble catalytic core involved in ATP synthesis/hydrolysis, and the Fo, Vo, or Ao complex which forms the membrane-embedded proton pore. The F-ATP synthases (also called FoF1-ATPases) are found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts, or in the plasma membranes of bacteria. F-ATPases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis. The A-ATP synthases (AoA1-ATPases), a different class of proton-translocating ATP synthases, are found in archaea and function like F-ATP synthases. Structurally, however, the A-ATP synthases are more closely related to the V-ATP synthases (vacuolar VoV1-ATPases), which are a proton-translocating ATPase responsible for acidification of eukaryotic intracellular compartments and for ATP synthesis in archaea and some eubacteria. Collectively, F-, V-, and A-type synthases can function in both ATP synthesis and hydrolysis modes. This family also includes the flagellum-specific ATPase/type III secretory pathway virulence-related protein, which shows extensive similarity to the alpha and beta subunits of F1-ATP synthase.


Pssm-ID: 349738 [Multi-domain]  Cd Length: 73  Bit Score: 39.22  E-value: 3.28e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1489380151  31 GTVLQVSDGVARIYGLDNAEANELL-------QFDNGMEAIVMNLEEDNVGAVLLGPTDQIKEGDTVKRTGR 95
Cdd:cd01426     2 GRVIRVNGPLVEAELEGEVAIGEVCeiergdgNNETVLKAEVIGFRGDRAILQLFESTRGLSRGALVEPTGR 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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