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Conserved domains on  [gi|1482005429|gb|RJK92280|]
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DUF4059 family protein [Lactococcus lactis subsp. lactis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4059 super family cl16200
Protein of unknown function (DUF4059); This family of proteins is functionally uncharacterized. ...
 2-69 8.80e-12

Protein of unknown function (DUF4059); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 70 amino acids in length. There is a conserved DKT sequence motif.


The actual alignment was detected with superfamily member pfam13268:

Pssm-ID: 404198  Cd Length: 72  Bit Score: 54.26  E-value: 8.80e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1482005429  2 ILQFYLKGLLISAIFVLLVGGLYAFTYLVRNTKKPWTERRNRIFDLILVGILTTPILSFAVLGVLVIL 69
Cdd:pfam13268  5 IFSFYLQGLLISFLLVLLVSLIWIFWRALRNVDKTAKERQAFLYDALMIDILTIPILSFAVMAILLVL 72
 
Name Accession Description Interval E-value
DUF4059 pfam13268
Protein of unknown function (DUF4059); This family of proteins is functionally uncharacterized. ...
 2-69 8.80e-12

Protein of unknown function (DUF4059); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 70 amino acids in length. There is a conserved DKT sequence motif.


Pssm-ID: 404198  Cd Length: 72  Bit Score: 54.26  E-value: 8.80e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1482005429  2 ILQFYLKGLLISAIFVLLVGGLYAFTYLVRNTKKPWTERRNRIFDLILVGILTTPILSFAVLGVLVIL 69
Cdd:pfam13268  5 IFSFYLQGLLISFLLVLLVSLIWIFWRALRNVDKTAKERQAFLYDALMIDILTIPILSFAVMAILLVL 72
 
Name Accession Description Interval E-value
DUF4059 pfam13268
Protein of unknown function (DUF4059); This family of proteins is functionally uncharacterized. ...
 2-69 8.80e-12

Protein of unknown function (DUF4059); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 70 amino acids in length. There is a conserved DKT sequence motif.


Pssm-ID: 404198  Cd Length: 72  Bit Score: 54.26  E-value: 8.80e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1482005429  2 ILQFYLKGLLISAIFVLLVGGLYAFTYLVRNTKKPWTERRNRIFDLILVGILTTPILSFAVLGVLVIL 69
Cdd:pfam13268  5 IFSFYLQGLLISFLLVLLVSLIWIFWRALRNVDKTAKERQAFLYDALMIDILTIPILSFAVMAILLVL 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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