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Conserved domains on  [gi|1478338072|gb|RIM63129|]
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HAD family hydrolase [Staphylococcus arlettae]

Protein Classification

HAD family hydrolase( domain architecture ID 229399)

HAD (haloacid dehalogenase) family hydrolase; the HAD family includes phosphoesterases, ATPases, phosphonatases, dehalogenases, and sugar phosphomutases acting on a remarkably diverse set of substrates

EC:  3.6.3.-
Gene Ontology:  GO:0005524|GO:0016887|GO:0005215

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
HAD_like super family cl21460
Haloacid Dehalogenase-like Hydrolases; The haloacid dehalogenase (HAD) superfamily includes ...
4-205 3.40e-54

Haloacid Dehalogenase-like Hydrolases; The haloacid dehalogenase (HAD) superfamily includes carbon and phosphorus hydrolases such as 2-haloalkonoate dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, among others. These proteins catalyze nucleophilic substitution reactions at phosphorus or carbon centers, using a conserved Asp carboxylate in covalent catalysis. All members possess a conserve alpha/beta core domain, and many also possess a small cap domain, with varying folds and functions.


The actual alignment was detected with superfamily member cd16423:

Pssm-ID: 473868 [Multi-domain]  Cd Length: 169  Bit Score: 170.51  E-value: 3.40e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   4 AVVFDFDGTIIDTEKHLFTIINKHLlahectplsldyyrssiggaaTELHDYLEKELGKEAKeaiytdhnrtsvDLPIDD 83
Cdd:cd16423     1 AVIFDFDGVIVDTEPLWYEAWQELL---------------------NERRNELIKRQFSEKT------------DLPPIE 47
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  84 EIEQLMIFLKQHHIPMAIATSSYRADIQPTFDKLGLEQYIDVIVGREDVAEVKPNPELYLTAVQRLNYNPVNCLAIEDSV 163
Cdd:cd16423    48 GVKELLEFLKEKGIKLAVASSSPRRWIEPHLERLGLLDYFEVIVTGDDVEKSKPDPDLYLEAAERLGVNPEECVVIEDSR 127
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1478338072 164 NGATAAVTAGLDVVVNTNDMTVAQDFSSVPFIGKNVTAREII 205
Cdd:cd16423   128 NGVLAAKAAGMKCVGVPNPVTGSQDFSKADLVLSSFAEKEIL 169
 
Name Accession Description Interval E-value
HAD_BPGM-like cd16423
uncharacterized subfamily of beta-phosphoglucomutase-like family, similar to uncharacterized ...
4-205 3.40e-54

uncharacterized subfamily of beta-phosphoglucomutase-like family, similar to uncharacterized Bacillus subtilis YhcW; This subfamily includes the uncharacterized Bacillus subtilis YhcW. It belongs to the beta-phosphoglucomutase-like family whose other members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate, and Escherichia coli 6-phosphogluconate phosphatase YieH. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319859 [Multi-domain]  Cd Length: 169  Bit Score: 170.51  E-value: 3.40e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   4 AVVFDFDGTIIDTEKHLFTIINKHLlahectplsldyyrssiggaaTELHDYLEKELGKEAKeaiytdhnrtsvDLPIDD 83
Cdd:cd16423     1 AVIFDFDGVIVDTEPLWYEAWQELL---------------------NERRNELIKRQFSEKT------------DLPPIE 47
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  84 EIEQLMIFLKQHHIPMAIATSSYRADIQPTFDKLGLEQYIDVIVGREDVAEVKPNPELYLTAVQRLNYNPVNCLAIEDSV 163
Cdd:cd16423    48 GVKELLEFLKEKGIKLAVASSSPRRWIEPHLERLGLLDYFEVIVTGDDVEKSKPDPDLYLEAAERLGVNPEECVVIEDSR 127
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1478338072 164 NGATAAVTAGLDVVVNTNDMTVAQDFSSVPFIGKNVTAREII 205
Cdd:cd16423   128 NGVLAAKAAGMKCVGVPNPVTGSQDFSKADLVLSSFAEKEIL 169
YcjU COG0637
Beta-phosphoglucomutase, HAD superfamily [Carbohydrate transport and metabolism];
1-190 7.50e-53

Beta-phosphoglucomutase, HAD superfamily [Carbohydrate transport and metabolism];


Pssm-ID: 440402 [Multi-domain]  Cd Length: 208  Bit Score: 168.46  E-value: 7.50e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   1 MYKAVVFDFDGTIIDTEkHLFTIINKHLLAHECTPLSLDYYRSSIGGAATELHDYLEKELGK--------EAKEAIYTDH 72
Cdd:COG0637     1 MIKAVIFDMDGTLVDSE-PLHARAWREAFAELGIDLTEEEYRRLMGRSREDILRYLLEEYGLdlpeeelaARKEELYREL 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  73 NRTSVDLPIDDeIEQLMIFLKQHHIPMAIATSSYRADIQPTFDKLGLEQYIDVIVGREDVAEVKPNPELYLTAVQRLNYN 152
Cdd:COG0637    80 LAEEGLPLIPG-VVELLEALKEAGIKIAVATSSPRENAEAVLEAAGLLDYFDVIVTGDDVARGKPDPDIYLLAAERLGVD 158
                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1478338072 153 PVNCLAIEDSVNGATAAVTAGLDVVVNTNDMTVAQDFS 190
Cdd:COG0637   159 PEECVVFEDSPAGIRAAKAAGMRVVGVPDGGTAEEELA 196
HAD_2 pfam13419
Haloacid dehalogenase-like hydrolase;
5-177 4.92e-32

Haloacid dehalogenase-like hydrolase;


Pssm-ID: 404323 [Multi-domain]  Cd Length: 178  Bit Score: 114.22  E-value: 4.92e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   5 VVFDFDGTIIDTEKHLFTIINKHLLAHECTPLSLDYYRSSIGGAATELHDYLEKELGKEAKEAIYTDHNRTSVD---LPI 81
Cdd:pfam13419   1 IIFDFDGTLLDTEELIIKSFNYLLEEFGYGELSEEEILKFIGLPLREIFRYLGVSEDEEEKIEFYLRKYNEELHdklVKP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  82 DDEIEQLMIFLKQHHIPMAIATSSYRADIQPTFDKLGLEQYIDVIVGREDVAEVKPNPELYLTAVQRLNYNPVNCLAIED 161
Cdd:pfam13419  81 YPGIKELLEELKEQGYKLGIVTSKSRENVEEFLKQLGLEDYFDVIVGGDDVEGKKPDPDPILKALEQLGLKPEEVIYVGD 160
                         170
                  ....*....|....*.
gi 1478338072 162 SVNGATAAVTAGLDVV 177
Cdd:pfam13419 161 SPRDIEAAKNAGIKVI 176
PGMB-YQAB-SF TIGR02009
beta-phosphoglucomutase family hydrolase; This subfamily model groups together three clades: ...
2-178 1.15e-29

beta-phosphoglucomutase family hydrolase; This subfamily model groups together three clades: the characterized beta-phosphoglucomutases (including those from E.coli, B.subtilus and L.lactis, TIGR01990), a clade of putative bPGM's from mycobacteria and a clade including the uncharacterized E.coli and H.influenzae yqaB genes which may prove to be beta-mutases of a related 1-phosphosugar. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).


Pssm-ID: 213673 [Multi-domain]  Cd Length: 185  Bit Score: 108.58  E-value: 1.15e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   2 YKAVVFDFDGTIIDTEkHLFTIINKHLLAHECTPLSLDYyRSSIGGAATE--LHDYLEKELGK----------EAKEAIY 69
Cdd:TIGR02009   1 YKAVIFDMDGVITDTA-PLHAQAWKHIAAKYGISFDKQY-NESLKGLSREdiLRAILKLRGDGlsleeihqlaERKNELY 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  70 TDHNRTSVDLPIDDeIEQLMIFLKQHHIPMAIATSSYRADiqPTFDKLGLEQYIDVIVGREDVAEVKPNPELYLTAVQRL 149
Cdd:TIGR02009  79 RELLRLTGVAVLPG-IRNLLKRLKAKGIAVGLGSSSKNAP--RILAKLGLRDYFDAIVDASEVKNGKPHPETFLLAAELL 155
                         170       180
                  ....*....|....*....|....*....
gi 1478338072 150 NYNPVNCLAIEDSVNGATAAVTAGLDVVV 178
Cdd:TIGR02009 156 GVPPNECIVFEDALAGVQAARAAGMFAVA 184
PLN02940 PLN02940
riboflavin kinase
4-177 4.40e-21

riboflavin kinase


Pssm-ID: 178528 [Multi-domain]  Cd Length: 382  Bit Score: 89.51  E-value: 4.40e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   4 AVVFDFDGTIIDTEKHLFTIINKHLLAH-------------ECTPLSldyyrssigGAATELHDY----LEKELGKEAKE 66
Cdd:PLN02940   13 HVILDLDGTLLNTDGIVSDVLKAFLVKYgkqwdgreaqkivGKTPLE---------AAATVVEDYglpcSTDEFNSEITP 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  67 AIYtDHNRTSVDLPiddEIEQLMIFLKQHHIPMAIATSSYRADIQPTFD-KLGLEQYIDVIVGREDVAEVKPNPELYLTA 145
Cdd:PLN02940   84 LLS-EQWCNIKALP---GANRLIKHLKSHGVPMALASNSPRANIEAKIScHQGWKESFSVIVGGDEVEKGKPSPDIFLEA 159
                         170       180       190
                  ....*....|....*....|....*....|..
gi 1478338072 146 VQRLNYNPVNCLAIEDSVNGATAAVTAGLDVV 177
Cdd:PLN02940  160 AKRLNVEPSNCLVIEDSLPGVMAGKAAGMEVI 191
 
Name Accession Description Interval E-value
HAD_BPGM-like cd16423
uncharacterized subfamily of beta-phosphoglucomutase-like family, similar to uncharacterized ...
4-205 3.40e-54

uncharacterized subfamily of beta-phosphoglucomutase-like family, similar to uncharacterized Bacillus subtilis YhcW; This subfamily includes the uncharacterized Bacillus subtilis YhcW. It belongs to the beta-phosphoglucomutase-like family whose other members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate, and Escherichia coli 6-phosphogluconate phosphatase YieH. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319859 [Multi-domain]  Cd Length: 169  Bit Score: 170.51  E-value: 3.40e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   4 AVVFDFDGTIIDTEKHLFTIINKHLlahectplsldyyrssiggaaTELHDYLEKELGKEAKeaiytdhnrtsvDLPIDD 83
Cdd:cd16423     1 AVIFDFDGVIVDTEPLWYEAWQELL---------------------NERRNELIKRQFSEKT------------DLPPIE 47
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  84 EIEQLMIFLKQHHIPMAIATSSYRADIQPTFDKLGLEQYIDVIVGREDVAEVKPNPELYLTAVQRLNYNPVNCLAIEDSV 163
Cdd:cd16423    48 GVKELLEFLKEKGIKLAVASSSPRRWIEPHLERLGLLDYFEVIVTGDDVEKSKPDPDLYLEAAERLGVNPEECVVIEDSR 127
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1478338072 164 NGATAAVTAGLDVVVNTNDMTVAQDFSSVPFIGKNVTAREII 205
Cdd:cd16423   128 NGVLAAKAAGMKCVGVPNPVTGSQDFSKADLVLSSFAEKEIL 169
YcjU COG0637
Beta-phosphoglucomutase, HAD superfamily [Carbohydrate transport and metabolism];
1-190 7.50e-53

Beta-phosphoglucomutase, HAD superfamily [Carbohydrate transport and metabolism];


Pssm-ID: 440402 [Multi-domain]  Cd Length: 208  Bit Score: 168.46  E-value: 7.50e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   1 MYKAVVFDFDGTIIDTEkHLFTIINKHLLAHECTPLSLDYYRSSIGGAATELHDYLEKELGK--------EAKEAIYTDH 72
Cdd:COG0637     1 MIKAVIFDMDGTLVDSE-PLHARAWREAFAELGIDLTEEEYRRLMGRSREDILRYLLEEYGLdlpeeelaARKEELYREL 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  73 NRTSVDLPIDDeIEQLMIFLKQHHIPMAIATSSYRADIQPTFDKLGLEQYIDVIVGREDVAEVKPNPELYLTAVQRLNYN 152
Cdd:COG0637    80 LAEEGLPLIPG-VVELLEALKEAGIKIAVATSSPRENAEAVLEAAGLLDYFDVIVTGDDVARGKPDPDIYLLAAERLGVD 158
                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1478338072 153 PVNCLAIEDSVNGATAAVTAGLDVVVNTNDMTVAQDFS 190
Cdd:COG0637   159 PEECVVFEDSPAGIRAAKAAGMRVVGVPDGGTAEEELA 196
Gph COG0546
Phosphoglycolate phosphatase, HAD superfamily [Energy production and conversion];
2-177 1.37e-34

Phosphoglycolate phosphatase, HAD superfamily [Energy production and conversion];


Pssm-ID: 440312 [Multi-domain]  Cd Length: 214  Bit Score: 121.96  E-value: 1.37e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   2 YKAVVFDFDGTIIDTEKHLFTIINKHLLAHECTPLSLDYYRSSIG-GAATELHDYLEKELGKEAKEAI--YTDHNRTSVD 78
Cdd:COG0546     1 IKLVLFDLDGTLVDSAPDIAAALNEALAELGLPPLDLEELRALIGlGLRELLRRLLGEDPDEELEELLarFRELYEEELL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  79 LPID--DEIEQLMIFLKQHHIPMAIATSSYRADIQPTFDKLGLEQYIDVIVGREDVAEVKPNPELYLTAVQRLNYNPVNC 156
Cdd:COG0546    81 DETRlfPGVRELLEALKARGIKLAVVTNKPREFAERLLEALGLDDYFDAIVGGDDVPPAKPKPEPLLEALERLGLDPEEV 160
                         170       180
                  ....*....|....*....|.
gi 1478338072 157 LAIEDSVNGATAAVTAGLDVV 177
Cdd:COG0546   161 LMVGDSPHDIEAARAAGVPFI 181
HAD_BPGM-like cd07505
beta-phosphoglucomutase-like family of the haloacid dehalogenase-like (HAD) hydrolase ...
4-178 2.56e-33

beta-phosphoglucomutase-like family of the haloacid dehalogenase-like (HAD) hydrolase superfamily; This family represents the beta-phosphoglucomutase-like family of the haloacid dehalogenase-like (HAD) hydrolase superfamily. Family members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate, and Escherichia coli 6-phosphogluconate phosphatase YieH. It belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319808 [Multi-domain]  Cd Length: 143  Bit Score: 116.56  E-value: 2.56e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   4 AVVFDFDGTIIDTEKHlftiinkhllahectplsldYYRSSIggaatelhDYLEKELGKEAKEAiytdhnrtSVDLPIDD 83
Cdd:cd07505     1 AVIFDMDGVLIDTEPL--------------------HRQAWQ--------LLERKNALLLELIA--------SEGLKLKP 44
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  84 EIEQLMIFLKQHHIPMAIATSSYRADIQPTFDKLGL-EQYIDVIVGREDVAEVKPNPELYLTAVQRLNYNPVNCLAIEDS 162
Cdd:cd07505    45 GVVELLDALKAAGIPVAVATSSSRRNVELLLLELGLlRGYFDVIVSGDDVERGKPAPDIYLLAAERLGVDPERCLVFEDS 124
                         170
                  ....*....|....*.
gi 1478338072 163 VNGATAAVTAGLDVVV 178
Cdd:cd07505   125 LAGIEAAKAAGMTVVA 140
HAD_2 pfam13419
Haloacid dehalogenase-like hydrolase;
5-177 4.92e-32

Haloacid dehalogenase-like hydrolase;


Pssm-ID: 404323 [Multi-domain]  Cd Length: 178  Bit Score: 114.22  E-value: 4.92e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   5 VVFDFDGTIIDTEKHLFTIINKHLLAHECTPLSLDYYRSSIGGAATELHDYLEKELGKEAKEAIYTDHNRTSVD---LPI 81
Cdd:pfam13419   1 IIFDFDGTLLDTEELIIKSFNYLLEEFGYGELSEEEILKFIGLPLREIFRYLGVSEDEEEKIEFYLRKYNEELHdklVKP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  82 DDEIEQLMIFLKQHHIPMAIATSSYRADIQPTFDKLGLEQYIDVIVGREDVAEVKPNPELYLTAVQRLNYNPVNCLAIED 161
Cdd:pfam13419  81 YPGIKELLEELKEQGYKLGIVTSKSRENVEEFLKQLGLEDYFDVIVGGDDVEGKKPDPDPILKALEQLGLKPEEVIYVGD 160
                         170
                  ....*....|....*.
gi 1478338072 162 SVNGATAAVTAGLDVV 177
Cdd:pfam13419 161 SPRDIEAAKNAGIKVI 176
PGMB-YQAB-SF TIGR02009
beta-phosphoglucomutase family hydrolase; This subfamily model groups together three clades: ...
2-178 1.15e-29

beta-phosphoglucomutase family hydrolase; This subfamily model groups together three clades: the characterized beta-phosphoglucomutases (including those from E.coli, B.subtilus and L.lactis, TIGR01990), a clade of putative bPGM's from mycobacteria and a clade including the uncharacterized E.coli and H.influenzae yqaB genes which may prove to be beta-mutases of a related 1-phosphosugar. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).


Pssm-ID: 213673 [Multi-domain]  Cd Length: 185  Bit Score: 108.58  E-value: 1.15e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   2 YKAVVFDFDGTIIDTEkHLFTIINKHLLAHECTPLSLDYyRSSIGGAATE--LHDYLEKELGK----------EAKEAIY 69
Cdd:TIGR02009   1 YKAVIFDMDGVITDTA-PLHAQAWKHIAAKYGISFDKQY-NESLKGLSREdiLRAILKLRGDGlsleeihqlaERKNELY 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  70 TDHNRTSVDLPIDDeIEQLMIFLKQHHIPMAIATSSYRADiqPTFDKLGLEQYIDVIVGREDVAEVKPNPELYLTAVQRL 149
Cdd:TIGR02009  79 RELLRLTGVAVLPG-IRNLLKRLKAKGIAVGLGSSSKNAP--RILAKLGLRDYFDAIVDASEVKNGKPHPETFLLAAELL 155
                         170       180
                  ....*....|....*....|....*....
gi 1478338072 150 NYNPVNCLAIEDSVNGATAAVTAGLDVVV 178
Cdd:TIGR02009 156 GVPPNECIVFEDALAGVQAARAAGMFAVA 184
HAD-SF-IA-v3 TIGR01509
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; ...
4-178 4.64e-28

haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; This model represents part of one structural subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The superfamily is defined by the presence of three short catalytic motifs. The subfamilies are defined based on the location and the observed or predicted fold of a so-called "capping domain", or the absence of such a domain. Subfamily I consists of sequences in which the capping domain is found in between the first and second catalytic motifs. Subfamily II consists of sequences in which the capping domain is found between the second and third motifs. Subfamily III sequences have no capping domain in either of these positions. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that representing it with a single model is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms: (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only one of the variants each. Variant 3 (this model) is found in the enzymes beta-phosphoglucomutase (TIGR01990) and deoxyglucose-6-phosphatase, while many other enzymes of subfamily IA exhibit this variant as well as variant 1 (TIGR01549). These three variant models were created with the knowledge that there will be overlap among them - this is by design and serves the purpose of eliminating the overlap with models of more distantly related HAD subfamilies caused by an overly broad single model. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 273662 [Multi-domain]  Cd Length: 178  Bit Score: 104.04  E-value: 4.64e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   4 AVVFDFDGTIIDTEKHLFTIIN---KHLLAHEctpLSLDYYRSSIGGAATELHDYLE---KELGKEAKEAIYTDHNRTSV 77
Cdd:TIGR01509   1 AILFDLDGVLVDTEFAIAKLINreeLGLVPDE---LGVSAVGRLELALRRFKAQYGRtisPEDAQLLYKQLFYEQIEEEA 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  78 DLPIDDEIEQLMIFLKQHHIPMAIATSSYRADIQpTFDKLGLEQYIDVIVGREDVAEVKPNPELYLTAVQRLNYNPVNCL 157
Cdd:TIGR01509  78 KLKPLPGVRALLEALRARGKKLALLTNSPRAHKL-VLALLGLRDLFDVVIDSSDVGLGKPDPDIYLQALKALGLEPSECV 156
                         170       180
                  ....*....|....*....|.
gi 1478338072 158 AIEDSVNGATAAVTAGLDVVV 178
Cdd:TIGR01509 157 FVDDSPAGIEAAKAAGMHTVG 177
Hydrolase pfam00702
haloacid dehalogenase-like hydrolase; This family is structurally different from the alpha ...
2-173 7.09e-26

haloacid dehalogenase-like hydrolase; This family is structurally different from the alpha/beta hydrolase family (pfam00561). This family includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure of the family consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of Swiss:P24069. The rest of the fold is composed of the core alpha/beta domain. Those members with the characteriztic DxD triad at the N-terminus are probably phosphatidylglycerolphosphate (PGP) phosphatases involved in cardiolipin biosynthesis in the mitochondria.


Pssm-ID: 459910 [Multi-domain]  Cd Length: 191  Bit Score: 98.81  E-value: 7.09e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   2 YKAVVFDFDGTIIDTEKHLFTIINKHLLAHECT----------PLSLDYYRSSIGGAATELHDYLEK------ELGKEAK 65
Cdd:pfam00702   1 IKAVVFDLDGTLTDGEPVVTEAIAELASEHPLAkaivaaaedlPIPVEDFTARLLLGKRDWLEELDIlrglveTLEAEGL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  66 EAIYTDHNRTSVD---LPIDDEIEQLMIFLKQHHIPMAIATSSYRADIQPTFDKLGLEQYIDVIVGREDVAEVKPNPELY 142
Cdd:pfam00702  81 TVVLVELLGVIALadeLKLYPGAAEALKALKERGIKVAILTGDNPEAAEALLRLLGLDDYFDVVISGDDVGVGKPKPEIY 160
                         170       180       190
                  ....*....|....*....|....*....|.
gi 1478338072 143 LTAVQRLNYNPVNCLAIEDSVNGATAAVTAG 173
Cdd:pfam00702 161 LAALERLGVKPEEVLMVGDGVNDIPAAKAAG 191
HAD_CbbY-like cd07528
subfamily of beta-phosphoglucomutase-like family, similar to Rhodobacter sphaeroides ...
4-178 2.09e-23

subfamily of beta-phosphoglucomutase-like family, similar to Rhodobacter sphaeroides xylulose-1,5-bisphosphate phosphatase CbbY; This family includes Rhodobacter sphaeroides and Arabidopsis thaliana xylulose-1,5-bisphosphate phosphatase CbbY which convert xylulose-1,5-bisphosphate (a potent inhibitor of Ribulose-1,5-bisphosphate carboxylase/oxygenase, Rubisco), to the non-inhibitory compound xylulose-5-phosphate. It belongs to the beta-phosphoglucomutase-like family whose other members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate, and Escherichia coli 6-phosphogluconate phosphatase YieH. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319830 [Multi-domain]  Cd Length: 199  Bit Score: 92.44  E-value: 2.09e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   4 AVVFDFDGTIIDTEKHLFTIINKHLLAHECTPL--SLDYYRS--SIGGAATELHDYLEKE-----LGKEAKEAIYTDHNR 74
Cdd:cd07528     1 ALIFDVDGTLAETEELHRRAFNNAFFAERGLDWywDRELYGEllRVGGGKERIAAYFEKVgwpesAPKDLKELIADLHKA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  75 TSV---------DLPIDDEIEQLMIFLKQHHIPMAIATSSYRADI----QPTFDKLGLEQYiDVIVGREDVAEVKPNPEL 141
Cdd:cd07528    81 KTEryaeliaagLLPLRPGVARLIDEAKAAGVRLAIATTTSPANVdallSALLGPERRAIF-DAIAAGDDVAEKKPDPDI 159
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1478338072 142 YLTAVQRLNYNPVNCLAIEDSVNGATAAVTAGLDVVV 178
Cdd:cd07528   160 YLLALERLGVSPSDCLAIEDSAIGLQAAKAAGLPCIV 196
PLN02940 PLN02940
riboflavin kinase
4-177 4.40e-21

riboflavin kinase


Pssm-ID: 178528 [Multi-domain]  Cd Length: 382  Bit Score: 89.51  E-value: 4.40e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   4 AVVFDFDGTIIDTEKHLFTIINKHLLAH-------------ECTPLSldyyrssigGAATELHDY----LEKELGKEAKE 66
Cdd:PLN02940   13 HVILDLDGTLLNTDGIVSDVLKAFLVKYgkqwdgreaqkivGKTPLE---------AAATVVEDYglpcSTDEFNSEITP 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  67 AIYtDHNRTSVDLPiddEIEQLMIFLKQHHIPMAIATSSYRADIQPTFD-KLGLEQYIDVIVGREDVAEVKPNPELYLTA 145
Cdd:PLN02940   84 LLS-EQWCNIKALP---GANRLIKHLKSHGVPMALASNSPRANIEAKIScHQGWKESFSVIVGGDEVEKGKPSPDIFLEA 159
                         170       180       190
                  ....*....|....*....|....*....|..
gi 1478338072 146 VQRLNYNPVNCLAIEDSVNGATAAVTAGLDVV 177
Cdd:PLN02940  160 AKRLNVEPSNCLVIEDSLPGVMAGKAAGMEVI 191
HAD_PPase cd02616
pyrophosphatase similar to Bacillus subtilis PpaX; This family includes Bacillus subtilis PpaX ...
2-173 6.29e-21

pyrophosphatase similar to Bacillus subtilis PpaX; This family includes Bacillus subtilis PpaX which hydrolyzes pyrophosphate formed during serine-46-phosphorylated HPr (P-Ser-HPr) dephosphorylation by the bifunctional enzyme HPr kinase/phosphorylase. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319797 [Multi-domain]  Cd Length: 207  Bit Score: 86.18  E-value: 6.29e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   2 YKAVVFDFDGTIIDTEKHLFTIINKHLLAHECTPLSLDYYRSSIGGAateLHDYLEK--ELGKEAKEAIYTDHNRTSVD- 78
Cdd:cd02616     1 ITTILFDLDGTLIDTNELIIKSFNHTLKEYGLEGYTREEVLPFIGPP---LRETFEKidPDKLEDMVEEFRKYYREHNDd 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  79 --LPIDDEIEQLMiFLKQHHIPMAIATSSYRADIQPTFDKLGLEQYIDVIVGREDVAEVKPNPELYLTAVQRLNYNPVNC 156
Cdd:cd02616    78 ltKEYPGVYETLA-RLKSQGIKLGVVTTKLRETALKGLKLLGLDKYFDVIVGGDDVTHHKPDPEPVLKALELLGAEPEEA 156
                         170
                  ....*....|....*..
gi 1478338072 157 LAIEDSVNGATAAVTAG 173
Cdd:cd02616   157 LMVGDSPHDILAGKNAG 173
bPGM TIGR01990
beta-phosphoglucomutase; This model represents the beta-phosphoglucomutase enzyme which ...
4-177 4.90e-20

beta-phosphoglucomutase; This model represents the beta-phosphoglucomutase enzyme which catalyzes the interconverison of beta-D-glucose-1-phosphate and beta-D-glucose-6-phosphate. The 6-phosphate is capable of non-enzymatic anomerization (alpha <-> beta) while the 1-phosphate is not. A separate enzyme is responsible for the isomerization of the alpha anomers. Beta-D-glucose-1-phosphate results from the phosphorylysis of maltose (2.4.1.8), trehalose (2.4.1.64) or trehalose-6-phosphate (2.4.1.216). Alternatively, these reactions can be run in the synthetic direction to create the disaccharides. All sequenced genomes which contain a member of this family also appear to contain at least one putative maltose or trehalose phosphorylase. Three species, Lactococcus, Enterococcus and Neisseria appear to contain a pair of paralogous beta-PGM's. Beta-phosphoglucomutase is a member of the haloacid dehalogenase superfamily of hydrolase enzymes. These enzymes are characterized by a series of three catalytic motifs positioned within an alpha-beta (Rossman) fold. beta-PGM contains an inserted alpha helical domain in between the first and second conserved motifs and thus is a member of subfamily IA of the superfamily. The third catalytic motif comes in three variants, the third of which, containing a conserved DD or ED, is the only one found here as well as in several other related enzymes (TIGR01509). The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state. [Energy metabolism, Biosynthesis and degradation of polysaccharides]


Pssm-ID: 213672 [Multi-domain]  Cd Length: 185  Bit Score: 83.51  E-value: 4.90e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   4 AVVFDFDGTIIDTEKHLFtIINKHLLAHECTPLSLDYYRSSIGGAATE-LHDYLE---KELGKEAKEAIYTDHNRTSVDL 79
Cdd:TIGR01990   1 AVIFDLDGVITDTAEYHY-LAWKHLADELGIPFDEEFNESLKGVSREEsLERILDlggKKYSEEEKEELAERKNDYYVEL 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  80 --PIDDE-----IEQLMIFLKQHHIPMAIATSSYRAdiqPT-FDKLGLEQYIDVIVGREDVAEVKPNPELYLTAVQRLNY 151
Cdd:TIGR01990  80 lkELTPAdvlpgIKSLLADLKKNNIKIALASASKNA---PTiLEKLELIDYFDAIVDPAELKKGKPDPEIFLAAAEGLGV 156
                         170       180
                  ....*....|....*....|....*.
gi 1478338072 152 NPVNCLAIEDSVNGATAAVTAGLDVV 177
Cdd:TIGR01990 157 SPSECIGIEDAQAGIEAIKAAGMFAV 182
PRK13222 PRK13222
N-acetylmuramic acid 6-phosphate phosphatase MupP;
1-177 5.49e-20

N-acetylmuramic acid 6-phosphate phosphatase MupP;


Pssm-ID: 237310 [Multi-domain]  Cd Length: 226  Bit Score: 84.09  E-value: 5.49e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   1 MYKAVVFDFDGTIIDTEKHLFTIINKHLLAHECTPLSLDYYRSSIG-GA--------ATELHDyLEKELGKEAKE---AI 68
Cdd:PRK13222    5 DIRAVAFDLDGTLVDSAPDLAAAVNAALAALGLPPAGEERVRTWVGnGAdvlveralTWAGRE-PDEELLEKLRElfdRH 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  69 YTDH--NRTSVDlpidDEIEQLMIFLKQHHIPMAIATSSYRADIQPTFDKLGLEQYIDVIVGREDVAEVKPNPE-LYLTA 145
Cdd:PRK13222   84 YAENvaGGSRLY----PGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIADYFSVVIGGDSLPNKKPDPApLLLAC 159
                         170       180       190
                  ....*....|....*....|....*....|..
gi 1478338072 146 vQRLNYNPVNCLAIEDSVNGATAAVTAGLDVV 177
Cdd:PRK13222  160 -EKLGLDPEEMLFVGDSRNDIQAARAAGCPSV 190
HAD_PGPase cd16417
Escherichia coli Gph phosphoglycolate phosphatase and related proteins; belongs to the ...
4-177 8.26e-20

Escherichia coli Gph phosphoglycolate phosphatase and related proteins; belongs to the haloacid dehalogenase-like superfamily; Phosphoglycolate phosphatase (PGP; EC 3.1.3.18) catalyzes the conversion of 2-phosphoglycolate into glycolate and phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase (C-Cl bond hydrolysis), azetidine hydrolase (C-N bond hydrolysis); phosphonoacetaldehyde hydrolase (C-P bond hydrolysis), phosphoserine phosphatase and phosphomannomutase (CO-P bond hydrolysis), P-type ATPases (PO-P bond hydrolysis) and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319854 [Multi-domain]  Cd Length: 212  Bit Score: 83.44  E-value: 8.26e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   4 AVVFDFDGTIIDTEKHLFTIINKHLLAHECTPLSLDYYRSSIG-GAATELHDYLEKELGKEAKE-------AIYTDHNRT 75
Cdd:cd16417     1 LVAFDLDGTLVDSAPDLAEAANAMLAALGLPPLPEETVRTWIGnGADVLVERALTGAREAEPDEelfkearALFDRHYAE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  76 SVDL--PIDDEIEQLMIFLKQHHIPMAIATSSYRADIQPTFDKLGLEQYIDVIVGREDVAEVKPNPELYLTAVQRLNYNP 153
Cdd:cd16417    81 TLSVhsHLYPGVKEGLAALKAQGYPLACVTNKPERFVAPLLEALGISDYFSLVLGGDSLPEKKPDPAPLLHACEKLGIAP 160
                         170       180
                  ....*....|....*....|....
gi 1478338072 154 VNCLAIEDSVNGATAAVTAGLDVV 177
Cdd:cd16417   161 AQMLMVGDSRNDILAARAAGCPSV 184
HAD_BPGM_like cd07526
subfamily of beta-phosphoglucomutase-like family, similar to Escherichia coli ...
3-176 1.86e-19

subfamily of beta-phosphoglucomutase-like family, similar to Escherichia coli 6-phosphogluconate phosphatase YieH; This subfamily includes Escherichia coli YieH/HAD3 an 6-phosphogluconate phosphatase, which can hydrolyzed purines and pyrimidines as secondary substrates. It belongs to the beta-phosphoglucomutase-like family whose other members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate, and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319828 [Multi-domain]  Cd Length: 141  Bit Score: 80.83  E-value: 1.86e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   3 KAVVFDFDGTIIDTEkhlftIInkhllahectplsldyyrssiggAATELHDYLEkELGKEAKEAIYTDHNrtsvdlPID 82
Cdd:cd07526     1 DLVIFDCDGVLVDSE-----VI-----------------------AARVLVEVLA-ELGARVLAAFEAELQ------PIP 45
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  83 dEIEQLmifLKQHHIPMAIATSSYRADIQPTFDKLGLEQYIDvivGR----EDVAEVKPNPELYLTAVQRLNYNPVNCLA 158
Cdd:cd07526    46 -GAAAA---LSALTLPFCVASNSSRERLTHSLGLAGLLAYFE---GRifsaSDVGRGKPAPDLFLHAAAQMGVAPERCLV 118
                         170
                  ....*....|....*...
gi 1478338072 159 IEDSVNGATAAVTAGLDV 176
Cdd:cd07526   119 IEDSPTGVRAALAAGMTV 136
HAD_AtGPP-like cd07529
subfamily of beta-phosphoglucomutase-like family, similar to Arabidopsis thaliana Gpp1 and ...
2-177 2.02e-19

subfamily of beta-phosphoglucomutase-like family, similar to Arabidopsis thaliana Gpp1 and Gpp2; This subfamily includes Arabidopsis thaliana AtGpp1 and AtGpp2, and Drosophila GS1-like protein (Dmel\Gs1l) of unknown function. AtGpp1 and AtGpp2 are constitutively expressed in all the Arabidopsis tissues and unaffected under abiotic stress. Overexpression of AtGpp2 in transgenic Arabidopsis plants increases the specific DL-glycerol-3-phosphatase activity and improves the plants tolerance to salt, osmotic and oxidative stress. It belongs to the beta-phosphoglucomutase-like family whose other members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate, and Escherichia coli 6-phosphogluconate phosphatase YieH. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319831 [Multi-domain]  Cd Length: 192  Bit Score: 82.01  E-value: 2.02e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   2 YKAVVFDFDGTIIDTEKhLFTIINKHLLAHECTPLSLDYYRSSIGGAATELHDYLEKELG---------KEAKEAIYTDH 72
Cdd:cd07529     1 VTHCIFDMDGLLLDTER-IYTETTQEILARYGKTYTWDVKAKMMGRPASEAARIIVDELKlpmsleeefDEQQEALAELF 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  73 NRTSVDLPiddEIEQLMIFLKQHHIPMAIATSSYRA--DIQPTFDKLGLEQYIDVIVGRED--VAEVKPNPELYLTAVQR 148
Cdd:cd07529    80 MGTAKLMP---GAERLLRHLHAHNIPIALATSSCTRhfKLKTSRHKELFSLFHHVVTGDDPevKGRGKPAPDIFLVAAKR 156
                         170       180       190
                  ....*....|....*....|....*....|..
gi 1478338072 149 LN---YNPVNCLAIEDSVNGATAAVTAGLDVV 177
Cdd:cd07529   157 FNeppKDPSKCLVFEDSPNGVKAAKAAGMQVV 188
HAD_PGPase cd07512
haloacid dehalogenase-like superfamily phosphoglycolate phosphatase, similar to Rhodobacter ...
4-180 3.93e-19

haloacid dehalogenase-like superfamily phosphoglycolate phosphatase, similar to Rhodobacter sphaeroides CbbZ; Phosphoglycolate phosphatase catalyzes the dephosphorylation of phosphoglycolate; its activity requires divalent cations, especially Mg++. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319815 [Multi-domain]  Cd Length: 214  Bit Score: 81.59  E-value: 3.93e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   4 AVVFDFDGTIIDTEKHLFTIINKHLLAHECTPLSLDYYRSSIGGAA----TELHDYLEKELGKEAKEAIYT---DHNRTS 76
Cdd:cd07512     1 AVIFDLDGTLIDSAPDLHAALNAVLAAEGLAPLSLAEVRSFVGHGApaliRRAFAAAGEDLDGPLHDALLArflDHYEAD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  77 VDL---PIDDEIEQLMiFLKQHHIPMAIATSSYRADIQPTFDKLGLEQYIDVIVGREDVAEVKPNPELYLTAVQRLNYNP 153
Cdd:cd07512    81 PPGltrPYPGVIEALE-RLRAAGWRLAICTNKPEAPARALLSALGLADLFAAVVGGDTLPQRKPDPAPLRAAIRRLGGDV 159
                         170       180
                  ....*....|....*....|....*..
gi 1478338072 154 VNCLAIEDSVNGATAAVTAGLDVVVNT 180
Cdd:cd07512   160 SRALMVGDSETDAATARAAGVPFVLVT 186
HAD_BPGM cd02598
beta-phosphoglucomutase, similar to Lactococcus lactis beta-phosphoglucomutase (beta-PGM); ...
4-177 4.41e-19

beta-phosphoglucomutase, similar to Lactococcus lactis beta-phosphoglucomutase (beta-PGM); Lactococcus lactis beta-PGM catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), forming beta-D-glucose 1,6-(bis)phosphate as an intermediate. In the forward G6P-forming direction, this reaction links polysaccharide phosphorolysis to glycolysis, in the reverse direction, the reaction provides G1P for the biosynthesis of exo-polysaccharides. This subfamily belongs to the beta-phosphoglucomutase-like family whose other members include Saccharomyces cerevisiae phosphatases GPP1 and GPP2 that dephosphorylate DL-glycerol-3-phosphate and DOG1 and DOG2 that dephosphorylate 2-deoxyglucose-6-phosphate, and Escherichia coli 6-phosphogluconate phosphatase YieH. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319788 [Multi-domain]  Cd Length: 174  Bit Score: 80.41  E-value: 4.41e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   4 AVVFDFDGTIIDTEKHLFTIINKHLLAHECTPLSLDYYRSSIggaaTELhdylekelgkeakeaiytdhnrTSVD-LPid 82
Cdd:cd02598     1 GVIFDLDGVITDTAEYHYRAWKKLADKEELAARKNRIYVELI----EEL----------------------TPVDvLP-- 52
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  83 dEIEQLMIFLKQHHIPMAIATSSYRADIqpTFDKLGLEQYIDVIVGREDVAEVKPNPELYLTAVQRLNYNPVNCLAIEDS 162
Cdd:cd02598    53 -GIASLLVDLKAKGIKIALASASKNAPK--ILEKLGLAEYFDAIVDGAVLAKGKPDPDIFLAAAEGLGLNPKDCIGVEDA 129
                         170
                  ....*....|....*
gi 1478338072 163 VNGATAAVTAGLDVV 177
Cdd:cd02598   130 QAGIRAIKAAGFLVV 144
YigB COG1011
FMN and 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, HAD superfamily ...
2-177 1.01e-18

FMN and 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, HAD superfamily (riboflavin biosynthesis) [Coenzyme transport and metabolism];


Pssm-ID: 440635 [Multi-domain]  Cd Length: 220  Bit Score: 80.84  E-value: 1.01e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   2 YKAVVFDFDGTIIDTEKHLFT----IINKHLLAHECTPLSLDYYRSSIGGAA---------TELHDYLEKELGKEAKEAI 68
Cdd:COG1011     1 IKAVLFDLDGTLLDFDPVIAEalraLAERLGLLDEAEELAEAYRAIEYALWRryergeitfAELLRRLLEELGLDLAEEL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  69 YTD-HNRTSVDLPIDDEIEQLMIFLKQHHIPMAIATSSYRADIQPTFDKLGLEQYIDVIVGREDVAEVKPNPELYLTAVQ 147
Cdd:COG1011    81 AEAfLAALPELVEPYPDALELLEALKARGYRLALLTNGSAELQEAKLRRLGLDDLFDAVVSSEEVGVRKPDPEIFELALE 160
                         170       180       190
                  ....*....|....*....|....*....|....
gi 1478338072 148 RLNYNPVNCLAIEDS----VNGATAavtAGLDVV 177
Cdd:COG1011   161 RLGVPPEEALFVGDSpetdVAGARA---AGMRTV 191
PLN02779 PLN02779
haloacid dehalogenase-like hydrolase family protein
3-196 2.07e-18

haloacid dehalogenase-like hydrolase family protein


Pssm-ID: 215416 [Multi-domain]  Cd Length: 286  Bit Score: 80.91  E-value: 2.07e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   3 KAVVFDFDGTIIDTEKHLFTI-INKHLLAHECTPL--SLDYYRS--SIGGAATELHDYLEK------ELGK------EAK 65
Cdd:PLN02779   41 EALLFDCDGVLVETERDGHRVaFNDAFKEFGLRPVewDVELYDEllNIGGGKERMTWYFNEngwptsTIEKapkdeeERK 120
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  66 EAIYTDHNR---------TSVDLPIDDEIEQLMIFLKQHHIPMAIATSSYRADIQPTFDK-LGLE--QYIDVIVGrEDVA 133
Cdd:PLN02779  121 ELVDSLHDRktelfkeliESGALPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTlLGPEraQGLDVFAG-DDVP 199
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1478338072 134 EVKPNPELYLTAVQRLNYNPVNCLAIEDSVNGATAAVTAGLDVVVNTNDMTVAQDFSS----VPFIG 196
Cdd:PLN02779  200 KKKPDPDIYNLAAETLGVDPSRCVVVEDSVIGLQAAKAAGMRCIVTKSSYTADEDFSGadavFDCLG 266
PRK10826 PRK10826
hexitol phosphatase HxpB;
85-172 8.57e-17

hexitol phosphatase HxpB;


Pssm-ID: 236770 [Multi-domain]  Cd Length: 222  Bit Score: 75.37  E-value: 8.57e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  85 IEQLMIFLKQHHIPMAIATSSYRADIQPTFDKLGLEQYIDVIVGREDVAEVKPNPELYLTAVQRLNYNPVNCLAIEDSVN 164
Cdd:PRK10826   97 VREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAKLGVDPLTCVALEDSFN 176

                  ....*...
gi 1478338072 165 GATAAVTA 172
Cdd:PRK10826  177 GMIAAKAA 184
PRK10725 PRK10725
fructose-1-phosphate/6-phosphogluconate phosphatase;
2-177 4.93e-14

fructose-1-phosphate/6-phosphogluconate phosphatase;


Pssm-ID: 182679 [Multi-domain]  Cd Length: 188  Bit Score: 67.41  E-value: 4.93e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   2 YKAVVFDFDGTIIDTEKhlftiinKHLLA--HECTPLSLDYYRSS-----------IGGAATELH--DYLEKELGKEAKE 66
Cdd:PRK10725    5 YAGLIFDMDGTILDTEP-------THRKAwrEVLGRYGLQFDEQAmvalngsptwrIAQAIIELNqaDLDPHALAREKTE 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  67 AIYTDHNRTSVDLPiddeieqLMIFLKQHH--IPMAIATSSYRADIQPTFDKLGLEQYIDVIVGREDVAEVKPNPELYLT 144
Cdd:PRK10725   78 AVKSMLLDSVEPLP-------LIEVVKAWHgrRPMAVGTGSESAIAEALLAHLGLRRYFDAVVAADDVQHHKPAPDTFLR 150
                         170       180       190
                  ....*....|....*....|....*....|...
gi 1478338072 145 AVQRLNYNPVNCLAIEDSVNGATAAVTAGLDVV 177
Cdd:PRK10725  151 CAQLMGVQPTQCVVFEDADFGIQAARAAGMDAV 183
HAD_like cd01427
Haloacid dehalogenase-like hydrolases; The haloacid dehalogenase-like (HAD) superfamily ...
85-177 1.09e-13

Haloacid dehalogenase-like hydrolases; The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others. This superfamily includes a variety of enzymes that catalyze the cleavage of substrate C-Cl, P-C, and P-OP bonds via nucleophilic substitution pathways. All of which use a nucleophilic aspartate in their phosphoryl transfer reaction. They catalyze nucleophilic substitution reactions at phosphorus or carbon centers, using a conserved Asp carboxylate in covalent catalysis. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319763 [Multi-domain]  Cd Length: 106  Bit Score: 64.34  E-value: 1.09e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  85 IEQLMIFLKQHHIPMAIATSSYRADIQPTFDKLGLEQYIDVIVGREDVAEVKPNPELYLTAVQRLNYNPVNCLAIEDSVN 164
Cdd:cd01427    12 AVELLKRLRAAGIKLAIVTNRSREALRALLEKLGLGDLFDGIIGSDGGGTPKPKPKPLLLLLLKLGVDPEEVLFVGDSEN 91
                          90
                  ....*....|...
gi 1478338072 165 GATAAVTAGLDVV 177
Cdd:cd01427    92 DIEAARAAGGRTV 104
PLN02811 PLN02811
hydrolase
10-177 2.81e-13

hydrolase


Pssm-ID: 178407 [Multi-domain]  Cd Length: 220  Bit Score: 65.93  E-value: 2.81e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  10 DGTIIDTEKhLFTIINKHLLAHECTPLSLDYYRSSIGGAATE----------LHDYLEKELGKEAKEAIYTDHNRTSVDL 79
Cdd:PLN02811    2 DGLLLDTEK-FYTEVQEKILARYGKTFDWSLKAKMMGKKAIEaarifveesgLSDSLSPEDFLVEREAMLQDLFPTSDLM 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  80 PiddEIEQLMIFLKQHHIPMAIATSSYRADI----QPTFDKLGLEQYidVIVGRE-DVAEVKPNPELYLTAVQRL---NY 151
Cdd:PLN02811   81 P---GAERLVRHLHAKGIPIAIATGSHKRHFdlktQRHGELFSLMHH--VVTGDDpEVKQGKPAPDIFLAAARRFedgPV 155
                         170       180
                  ....*....|....*....|....*.
gi 1478338072 152 NPVNCLAIEDSVNGATAAVTAGLDVV 177
Cdd:PLN02811  156 DPGKVLVFEDAPSGVEAAKNAGMSVV 181
HAD_ScGPP-like cd07527
subfamily of beta-phosphoglucomutase-like family, similar to Saccharomyces cerevisiae ...
4-180 4.15e-13

subfamily of beta-phosphoglucomutase-like family, similar to Saccharomyces cerevisiae DL-glycerol-3-phosphate phosphatase (GPP1p/ Rhr2p and GPP2p/HOR2p) and 2-deoxyglucose-6-phosphate phosphatase (DOG1p and DOG2p); This subfamily includes Saccharomyces cerevisiae DL-glycerol-3-phosphate phosphatase (GPP1p/ Rhr2p and GPP2p/HOR2p) and 2-deoxyglucose-6-phosphate phosphatase (DOG1p and DOG2p). GPP1p and GPP2p are involved in glycerol biosynthesis, GPP1 is induced in response to both anaerobic and hyperosmotic stress, GPP2 is induced in response to hyperosmotic or oxidative stress, and during diauxic shift; overexpression of DOG1 or DOG2 confers 2-deoxyglucose resistance. These belong to the beta-phosphoglucomutase-like family whose other members include Lactococcus lactis beta-PGM, a mutase which catalyzes the interconversion of beta-D-glucose 1-phosphate (G1P) and D-glucose 6-phosphate (G6P), and Escherichia coli 6-phosphogluconate phosphatase YieH. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319829 [Multi-domain]  Cd Length: 205  Bit Score: 65.44  E-value: 4.15e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   4 AVVFDFDGTIIDTekhlftiinkhllahecTPlsldyyrssiggAATELHDYLEKELGKEAKEAIYTDHNRTSVD----- 78
Cdd:cd07527     1 ALLFDMDGTLVDS-----------------TP------------AVERAWHKWAKEHGVDPEEVLKVSHGRRAIDvirkl 51
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  79 LPIDDEIEQ-------LMIFLKQHHIPM-----------------AIATSSYRADIQPTFDKLGLEQyIDVIVGREDVAE 134
Cdd:cd07527    52 APDDADIELvlaleteEPESYPEGVIAIpgavdllaslpaagdrwAIVTSGTRALAEARLEAAGLPH-PEVLVTADDVKN 130
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1478338072 135 VKPNPELYLTAVQRLNYNPVNCLAIEDSVNGATAAVTAGLDVV-VNT 180
Cdd:cd07527   131 GKPDPEPYLLGAKLLGLDPSDCVVFEDAPAGIKAGKAAGARVVaVNT 177
HAD-SF-IA-v1 TIGR01549
haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or ...
4-173 1.53e-12

haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; This model represents part of one structural subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The superfamily is defined by the presence of three short catalytic motifs. The subfamilies are defined based on the location and the observed or predicted fold of a so-called "capping domain", or the absence of such a domain. Subfamily I consists of sequences in which the capping domain is found in between the first and second catalytic motifs. Subfamily II consists of sequences in which the capping domain is found between the second and third motifs. Subfamily III sequences have no capping domain in either of these positions.The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that representing it with a single model is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms: (1) hhhhsDxxx(x)(D/E), (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only one of the variants each. Variant 1 (this model) is found in the enzymes phosphoglycolate phosphatase (TIGR01449) and enolase-phosphatase. These three variant models (see also TIGR01493 and TIGR01509) were created withthe knowledge that there will be overlap among them - this is by design and serves the purpose of eliminating the overlap with models of more distantly relatedHAD subfamilies caused by an overly broad single model. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 273686 [Multi-domain]  Cd Length: 164  Bit Score: 62.80  E-value: 1.53e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   4 AVVFDFDGTIIDTEKHLFTIINKHLLAHECTPLSLDYYRSSIGGAATELHDYLEKELGK--EAKEAIYTDHNRTSVDLPi 81
Cdd:TIGR01549   1 AILFDIDGTLVDIKFAIRRAFPQTFEEFGLDPASFKALKQAGGLAEEEWYRIATSALEElqGRFWSEYDAEEAYIRGAA- 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  82 ddeieQLMIFLKQHHIPMAIATSSYRADIQPTFDKLGLEQYIDVIVGREDVAEvKPNPELYLTAVQRLNYNPvNCLAIED 161
Cdd:TIGR01549  80 -----DLLARLKSAGIKLGIISNGSLRAQKLLLRLFGLGDYFELILVSDEPGS-KPEPEIFLAALESLGVPP-EVLHVGD 152
                         170
                  ....*....|..
gi 1478338072 162 SVNGATAAVTAG 173
Cdd:TIGR01549 153 NLNDIEGARNAG 164
PLN03243 PLN03243
haloacid dehalogenase-like hydrolase; Provisional
54-177 1.89e-12

haloacid dehalogenase-like hydrolase; Provisional


Pssm-ID: 215644 [Multi-domain]  Cd Length: 260  Bit Score: 64.28  E-value: 1.89e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  54 DYLEKELGKEAKEAIYTDHNRTSVDL-PIDDEIEQLmifLKQHHIPMAIATSSYRADIQPTFDKLGLEQYIDVIVGREDV 132
Cdd:PLN03243   85 DFLQMKRLAIRKEDLYEYMQGGLYRLrPGSREFVQA---LKKHEIPIAVASTRPRRYLERAIEAVGMEGFFSVVLAAEDV 161
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1478338072 133 AEVKPNPELYLTAVQRLNYNPVNCLAIEDSVNGATAAVTAGLDVV 177
Cdd:PLN03243  162 YRGKPDPEMFMYAAERLGFIPERCIVFGNSNSSVEAAHDGCMKCV 206
PLN02575 PLN02575
haloacid dehalogenase-like hydrolase
86-169 1.90e-12

haloacid dehalogenase-like hydrolase


Pssm-ID: 215313 [Multi-domain]  Cd Length: 381  Bit Score: 65.27  E-value: 1.90e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  86 EQLMIFLKQHHIPMAIATSSYRADIQPTFDKLGLEQYIDVIVGREDVAEVKPNPELYLTAVQRLNYNPVNCLAIEDSVNG 165
Cdd:PLN02575  222 QEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLLNFIPERCIVFGNSNQT 301

                  ....
gi 1478338072 166 ATAA 169
Cdd:PLN02575  302 VEAA 305
PRK10563 PRK10563
6-phosphogluconate phosphatase; Provisional
4-176 4.35e-12

6-phosphogluconate phosphatase; Provisional


Pssm-ID: 182552 [Multi-domain]  Cd Length: 221  Bit Score: 62.79  E-value: 4.35e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   4 AVVFDFDGTIIDTEkhlfTIINK---HLLAHECTPLSLD-YYRSSIGGAATELHDYLEKELGKEAKEAIYTDHNRTSVDL 79
Cdd:PRK10563    6 AVFFDCDGTLVDSE----VICSRayvTMFAEFGITLSLEeVFKRFKGVKLYEIIDIISKEHGVTLAKAELEPVYRAEVAR 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  80 PIDDEIEQLM---IFLKQHHIPMAIATSSYRADIQPTFDKLGLEQYI-DVIVGREDVAEVKPNPELYLTAVQRLNYNPVN 155
Cdd:PRK10563   82 LFDSELEPIAganALLESITVPMCVVSNGPVSKMQHSLGKTGMLHYFpDKLFSGYDIQRWKPDPALMFHAAEAMNVNVEN 161
                         170       180
                  ....*....|....*....|.
gi 1478338072 156 CLAIEDSVNGATAAVTAGLDV 176
Cdd:PRK10563  162 CILVDDSSAGAQSGIAAGMEV 182
PRK13288 PRK13288
pyrophosphatase PpaX; Provisional
1-173 9.85e-12

pyrophosphatase PpaX; Provisional


Pssm-ID: 237336 [Multi-domain]  Cd Length: 214  Bit Score: 61.58  E-value: 9.85e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   1 MYKAVVFDFDGTIIDTEKhlfTIIN--KHLLAHEctpLSLDYYRSS----IGgaaTELHDYLEKELGKEAKEAI--YTDH 72
Cdd:PRK13288    2 KINTVLFDLDGTLINTNE---LIISsfLHTLKTY---YPNQYKREDvlpfIG---PSLHDTFSKIDESKVEEMIttYREF 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  73 NRTSVDLPID--DEIEQLMIFLKQHHIPMAIATSSYRADIQPTFDKLGLEQYIDVIVGREDVAEVKPNPELYLTAVQRLN 150
Cdd:PRK13288   73 NHEHHDELVTeyETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLG 152
                         170       180
                  ....*....|....*....|...
gi 1478338072 151 YNPVNCLAIEDSVNGATAAVTAG 173
Cdd:PRK13288  153 AKPEEALMVGDNHHDILAGKNAG 175
PLN02770 PLN02770
haloacid dehalogenase-like hydrolase family protein
3-177 4.16e-11

haloacid dehalogenase-like hydrolase family protein


Pssm-ID: 215413 [Multi-domain]  Cd Length: 248  Bit Score: 60.24  E-value: 4.16e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   3 KAVVFDFDGTIIDTEK-HLFTIinKHLLA----HECTPLSLDYYRSSIGGAATE------LHDYLEKELG-KEAKEAIYT 70
Cdd:PLN02770   23 EAVLFDVDGTLCDSDPlHYYAF--REMLQeinfNGGVPITEEFFVENIAGKHNEdialglFPDDLERGLKfTDDKEALFR 100
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  71 DHNRTSVDlPIDDeIEQLMIFLKQHHIPMAIATSSYRADIQPTFDKLGLEQYIDVIVGREDVAEVKPNPELYLTAVQRLN 150
Cdd:PLN02770  101 KLASEQLK-PLNG-LYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEVLK 178
                         170       180
                  ....*....|....*....|....*..
gi 1478338072 151 YNPVNCLAIEDSVNGATAAVTAGLDVV 177
Cdd:PLN02770  179 VSKDHTFVFEDSVSGIKAGVAAGMPVV 205
PRK13226 PRK13226
phosphoglycolate phosphatase; Provisional
3-178 1.48e-10

phosphoglycolate phosphatase; Provisional


Pssm-ID: 237311 [Multi-domain]  Cd Length: 229  Bit Score: 58.71  E-value: 1.48e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   3 KAVVFDFDGTIIDTEKHLFTIINKHLLAHECTPLSLDYYRSSIGGAATELHDYLEKELGKEAKEAIYTDHNRTSVDL--- 79
Cdd:PRK13226   13 RAVLFDLDGTLLDSAPDMLATVNAMLAARGRAPITLAQLRPVVSKGARAMLAVAFPELDAAARDALIPEFLQRYEALigt 92
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  80 --PIDDEIEQLMIFLKQHHIPMAIATSSYRADIQPTFDKLGLEQYIDVIVGREDVAEVKPNPELYLTAVQRLNYNPVNCL 157
Cdd:PRK13226   93 qsQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGVAPTDCV 172
                         170       180
                  ....*....|....*....|.
gi 1478338072 158 AIEDSVNGATAAVTAGLDVVV 178
Cdd:PRK13226  173 YVGDDERDILAARAAGMPSVA 193
PRK13223 PRK13223
phosphoglycolate phosphatase; Provisional
3-177 1.06e-09

phosphoglycolate phosphatase; Provisional


Pssm-ID: 171912 [Multi-domain]  Cd Length: 272  Bit Score: 56.80  E-value: 1.06e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   3 KAVVFDFDGTIIDTEKHLFTIINKHLLAHECTPLSLDYYRSSIGGAATEL----------HDYLEKELGKEAKE---AIY 69
Cdd:PRK13223   14 RLVMFDLDGTLVDSVPDLAAAVDRMLLELGRPPAGLEAVRHWVGNGAPVLvrralagsidHDGVDDELAEQALAlfmEAY 93
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  70 TDHNRTSVDLPiddEIEQLMIFLKQHHIPMAIATSSYRADIQPTFDKLGLEQYIDVIVGREDVAEVKPNPELYLTAVQRL 149
Cdd:PRK13223   94 ADSHELTVVYP---GVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGRYFRWIIGGDTLPQKKPDPAALLFVMKMA 170
                         170       180
                  ....*....|....*....|....*...
gi 1478338072 150 NYNPVNCLAIEDSVNGATAAVTAGLDVV 177
Cdd:PRK13223  171 GVPPSQSLFVGDSRSDVLAAKAAGVQCV 198
HAD_L2-DEX cd02588
L-2-haloacid dehalogenase; L-2-Haloacid dehalogenase catalyzes the hydrolytic dehalogenation ...
3-177 6.20e-08

L-2-haloacid dehalogenase; L-2-Haloacid dehalogenase catalyzes the hydrolytic dehalogenation of L-2-haloacids to produce the corresponding D-2-hydroxyacids with an inversion of the C2-configuration. 2-haloacid dehalogenases are of interest for their potential to degrade recalcitrant halogenated environmental pollutants and their use in the synthesis of industrial chemicals. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319787 [Multi-domain]  Cd Length: 216  Bit Score: 51.11  E-value: 6.20e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   3 KAVVFDFDGTIIDTEKHLFTIINKH-----LLAHECTPLSLDYY-RSSIGGaatELHDYleKELGKEAKEAIYTDHNRTs 76
Cdd:cd02588     1 KALVFDVYGTLIDWHSGLAAAERAFpgrgeELSRLWRQKQLEYTwLVTLMG---PYVDF--DELTRDALRATAAELGLE- 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  77 vdlPIDDEIEQLMIF----------------LKQHHIPMAIATSSYRADIQPTFDKLGLEQYIDVIVGREDVAEVKPNPE 140
Cdd:cd02588    75 ---LDESDLDELGDAylrlppfpdvvaglrrLREAGYRLAILSNGSPDLIEDVVANAGLRDLFDAVLSAEDVRAYKPAPA 151
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1478338072 141 LYLTAVQRLNYNPVNCLAIEDSVNGATAAVTAGLDVV 177
Cdd:cd02588   152 VYELAAERLGVPPDEILHVASHAWDLAGARALGLRTA 188
HAD_5NT cd04302
haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065; ...
4-161 3.32e-07

haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065; 5'-nucleotidases dephosphorylate nucleoside 5'-monophosphates to nucleosides and inorganic phosphate. Purified Pseudomonas aeruginosa PA0065 displayed high activity toward 5'-UMP and 5'-IMP, significant activity against 5'-XMP and 5'-TMP, and low activity against 5'-CMP. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319798 [Multi-domain]  Cd Length: 209  Bit Score: 48.74  E-value: 3.32e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   4 AVVFDFDGTIIDTEKHLFTIINKHL--LAHECtpLSLDYYRSSIGGAateLHDYLEKELG---KEAKEAI--YTDH--NR 74
Cdd:cd04302     1 TILFDLDGTLTDSAEGITASVQYALeeLGIPV--PDESELRRFIGPP---LEDSFRELLPfdeEEAQRAVdaYREYykEK 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  75 TSVDLPIDDEIEQLMIFLKQHHIPMAIATSSYRADIQPTFDKLGLEQYIDVIVGREDVAEVKPNPELYLTAVQRLNYNPV 154
Cdd:cd04302    76 GLFENEVYPGIPELLEKLKAAGYRLYVATSKPEVFARRILEHFGLDEYFDGIAGASLDGSRVHKADVIRYALDTLGIAPE 155

                  ....*..
gi 1478338072 155 NCLAIED 161
Cdd:cd04302   156 QAVMIGD 162
HAD_Neu5Ac-Pase_like cd04305
human N-acetylneuraminate-9-phosphate phosphatase, Escherichia coli house-cleaning phosphatase ...
83-177 2.64e-06

human N-acetylneuraminate-9-phosphate phosphatase, Escherichia coli house-cleaning phosphatase YjjG, and related phosphatases; N-acetylneuraminate-9- phosphatase (Neu5Ac-9-Pase; E.C. 3.1.3.29) catalyzes the dephosphorylation of N-acylneuraminate 9-phosphate during the synthesis of N-acetylneuraminate; Escherichia coli nucleotide phosphatase YjjG has a broad pyrimidine nucleotide activity spectrum and functions as an in vivo house-cleaning phosphatase for noncanonical pyrimidine nucleotides. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319800 [Multi-domain]  Cd Length: 109  Bit Score: 44.46  E-value: 2.64e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  83 DEIEQLMIFLKQHHiPMAIATSSYRADIQPTFDKLGLEQYIDVIVGREDVAEVKPNPELYLTAVQRLNYNPVNCLAIEDS 162
Cdd:cd04305    12 PGAKELLEELKKGY-KLGIITNGPTEVQWEKLEQLGIHKYFDHIVISEEVGVQKPNPEIFDYALNQLGVKPEETLMVGDS 90
                          90
                  ....*....|....*.
gi 1478338072 163 V-NGATAAVTAGLDVV 177
Cdd:cd04305    91 LeSDILGAKNAGIKTV 106
PRK11587 PRK11587
putative phosphatase; Provisional
3-179 1.22e-05

putative phosphatase; Provisional


Pssm-ID: 183215 [Multi-domain]  Cd Length: 218  Bit Score: 44.60  E-value: 1.22e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   3 KAVVFDFDGTIIDT----EKHLFTIINKHLLAHECTplsLDYyrssIGG--AATELHDYL----EKELGKE--AKEAIYT 70
Cdd:PRK11587    4 KGFLFDLDGTLVDSlpavERAWSNWADRHGIAPDEV---LNF----IHGkqAITSLRHFMagasEAEIQAEftRLEQIEA 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  71 DHNRTSVDLPidDEIEqLMIFLKQHHIPMAIATS------SYRADIQptfdklGLEQyIDVIVGREDVAEVKPNPELYLT 144
Cdd:PRK11587   77 TDTEGITALP--GAIA-LLNHLNKLGIPWAIVTSgsvpvaSARHKAA------GLPA-PEVFVTAERVKRGKPEPDAYLL 146
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1478338072 145 AVQRLNYNPVNCLAIEDsvngATAAVTAGLD-----VVVN 179
Cdd:PRK11587  147 GAQLLGLAPQECVVVED----APAGVLSGLAagchvIAVN 182
PLN02919 PLN02919
haloacid dehalogenase-like hydrolase family protein
87-174 1.53e-05

haloacid dehalogenase-like hydrolase family protein


Pssm-ID: 215497 [Multi-domain]  Cd Length: 1057  Bit Score: 45.23  E-value: 1.53e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   87 QLMIFLKQHHIPMAIATSSYRADIQPTFDKLGLEQ-YIDVIVGREDVAEVKPNPELYLTAVQRLNYNPVNCLAIEDSVNG 165
Cdd:PLN02919   168 ELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLsMFDAIVSADAFENLKPAPDIFLAAAKILGVPTSECVVIEDALAG 247

                   ....*....
gi 1478338072  166 ATAAVTAGL 174
Cdd:PLN02919   248 VQAARAAGM 256
HAD-SF-IB TIGR01488
Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like; This model ...
4-130 1.82e-05

Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like; This model represents a subfamily of the Haloacid Dehalogenase superfamily of aspartate-nucleophile hydrolases. Subfamily IA, B, C and D are distinguished from the rest of the superfamily by the presence of a variable domain between the first and second conserved catalytic motifs. In subfamilies IA and IB, this domain consists of an alpha-helical bundle. It was necessary to model these two subfamilies separately, breaking them at a an apparent phylogenetic bifurcation, so that the resulting model(s) are not so broadly defined that members of subfamily III (which lack the variable domain) are included. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 273653 [Multi-domain]  Cd Length: 177  Bit Score: 43.50  E-value: 1.82e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   4 AVVFDFDGTIIDTEkhLFTIINKHLL-----AHECTPLSLD---YYRSSIGGAATELHDYLEKELgkeAKEAIYTdhnrt 75
Cdd:TIGR01488   1 LAIFDFDGTLTRQD--SLIDLLAKLLgtndeVIELTRLAPSgriSFEDALGRRLALLHRSRSEEV---AKEFLAR----- 70
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1478338072  76 svDLPIDDEIEQLMIFLKQHHIPMAIATSSYRADIQPTFDKLGleqyIDVIVGRE 130
Cdd:TIGR01488  71 --QVALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLG----IDDVFANR 119
DKMTPPase-SF TIGR01489
2,3-diketo-5-methylthio-1-phosphopentane phosphatase; This phosphatase is a member of the IB ...
5-127 1.11e-04

2,3-diketo-5-methylthio-1-phosphopentane phosphatase; This phosphatase is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. With the exception of OMNI|NTL01BS01361 from B. subtilis and GP|15024582 from Clostridium acetabutylicum, the members of this group are all eukaryotic, spanning metazoa, plants and fungi. The B. subtilus gene (YkrX, renamed MtnX) is part of an operon for the conversion of methylthioribose (MTR) to methionine. It works with the enolase MtnW, a RuBisCO homolog. The combination of MtnW and MtnX achieves the same overall reaction as the enolase-phosphatase MtnC. The function of MtnX was shown by Ashida, et al. (2003) to be 2,3-diketo-5-methylthio-1-phosphopentane phosphatase, rather than 2,3-diketo-5-methylthio-1-phosphopentane phosphatase as proposed earlier. See the Genome Property for methionine salvage for more details. In eukaryotes, methionine salvage from methylthioadenosine also occurs. It seems reasonable that members of this family in eukaryotes fulfill a similar role as in Bacillus. A more specific, equivalog-level model is TIGR03333. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact. [Central intermediary metabolism, Other]


Pssm-ID: 213629 [Multi-domain]  Cd Length: 188  Bit Score: 41.26  E-value: 1.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   5 VVFDFDGTIIDTEKHlfTIINKHLLAHECTPLSLDYYRSsigGAATELHDYLEKEL---GKEAKEAIytdhnRTSVDLPI 81
Cdd:TIGR01489   4 VVSDFDGTITLNDSD--DWITDKFGPPEANRLLDGVLSK---TLSIKFMDRRMKGLlpsGLKEDEIL-----EVLKSAPI 73
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1478338072  82 DDEIEQLMIFLKQHHIPMAIATSSYRADIQPTFDKLGLEQYIDVIV 127
Cdd:TIGR01489  74 DPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKDVFIEIY 119
HAD_PGPase cd16421
Rhodobacter capsulatus Cbbz phosphoglycolate phosphatase and related proteins; ; belongs to ...
85-177 1.34e-04

Rhodobacter capsulatus Cbbz phosphoglycolate phosphatase and related proteins; ; belongs to the haloacid dehalogenase-like superfamily; Phosphoglycolate phosphatase (PGPase; EC 3.1.3.18) catalyzes the conversion of 2-phosphoglycolate into glycolate and phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase (C-Cl bond hydrolysis), azetidine hydrolase (C-N bond hydrolysis); phosphonoacetaldehyde hydrolase (C-P bond hydrolysis), phosphoserine phosphatase and phosphomannomutase (CO-P bond hydrolysis), P-type ATPases (PO-P bond hydrolysis) and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319857 [Multi-domain]  Cd Length: 105  Bit Score: 39.75  E-value: 1.34e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  85 IEQLMIFLKQHHIPMAIATSSYRADIQPTFDKLGlEQYIDVIVGREDVAEVKPNPELYLTAVQRLNYNPVNCLAIEDS-V 163
Cdd:cd16421    12 ILELLKALRQKGIKLAVLSNKPNEAVQVLVEELF-PGSFDFVLGEKEGIRRKPDPT*ALECAKVLGVPPDEVLYVGDSgV 90
                          90
                  ....*....|....
gi 1478338072 164 NGATAAvTAGLDVV 177
Cdd:cd16421    91 DMQTAR-NAGMDEI 103
HAD_like cd07533
uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily, similar ...
5-173 1.91e-04

uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily, similar to Parvibaculum lavamentivorans HAD-superfamily hydrolase, subfamily IA, variant 1; This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319835 [Multi-domain]  Cd Length: 207  Bit Score: 40.84  E-value: 1.91e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   5 VVFDFDGTIIDTEKHLFTIINKHLLAHECTPLSLDYYRSSIG------------GAATELHDYLEKElgkeaKEAIYTDH 72
Cdd:cd07533     2 VIFDWDGTLADSQHNIVAAMTAAFADLGLPVPSAAEVRSIIGlsldeaiarllpMATPALVAVAERY-----KEAFDILR 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  73 NRTSVDLPIDDEIEQLMIFLKQHHIPMAIATSSYRADIQPTFDKLGLEQYIDVIVGREDvAEVKPNPELYLTAVQRLNYN 152
Cdd:cd07533    77 LLPEHAEPLFPGVREALDALAAQGVLLAVATGKSRRGLDRVLEQHGLGGYFDATRTADD-TPSKPHPEMLREILAELGVD 155
                         170       180
                  ....*....|....*....|.
gi 1478338072 153 PVNCLAIEDSVNGATAAVTAG 173
Cdd:cd07533   156 PSRAVMVGDTAYDMQMAANAG 176
HAD_dREG-2_like cd16415
uncharacterized family of the haloacid dehalogenase-like superfamily, similar to ...
86-169 3.19e-04

uncharacterized family of the haloacid dehalogenase-like superfamily, similar to uncharacterized Drosophila melanogaster rhythmically expressed gene 2 protein and human haloacid dehalogenase-like hydrolase domain-containing protein 3; The haloacid dehalogenase-like (HAD) hydrolases are a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members include 2-L-haloalkanoic acid dehalogenase (C-Cl bond hydrolysis), azetidine hydrolase (C-N bond hydrolysis); phosphonoacetaldehyde hydrolase (C-P bond hydrolysis), phosphoserine phosphatase and phosphomannomutase (CO-P bond hydrolysis), P-type ATPases (PO-P bond hydrolysis) and many others. Members are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319852 [Multi-domain]  Cd Length: 128  Bit Score: 39.20  E-value: 3.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072  86 EQLMIFLKQHHIPMAIaTSSYRADIQPTFDKLGLEQYIDVIVGREDVAEVKPNPELYLTAVQRLNYNPVNCLAIEDS--- 162
Cdd:cd16415    13 VETLKDLKEKGLKLAV-VSNFDRRLRELLEALGLDDYFDFVVFSYEVGYEKPDPRIFQKALERLGVSPEEALHVGDDlkn 91

                  ....*...
gi 1478338072 163 -VNGATAA 169
Cdd:cd16415    92 dYLGARAV 99
HAD pfam12710
haloacid dehalogenase-like hydrolase;
5-131 7.22e-04

haloacid dehalogenase-like hydrolase;


Pssm-ID: 432733 [Multi-domain]  Cd Length: 188  Bit Score: 39.05  E-value: 7.22e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1478338072   5 VVFDFDGTIIDTEKHLFtiINKHLLAHECTPLSLDYYRSSIGGAATELHDYLEKEL---------GKEAKEAIYTDHNRT 75
Cdd:pfam12710   1 ALFDLDGTLLDGDSLFL--LIRALLRRGGPDLWRALLVLLLLALLRLLGRLSRAGArellrallaGLPEEDAAELERFVA 78
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1478338072  76 SVDLP-IDDEIEQLMIFLKQHHIPMAIATSSYRADIQPTFDKLGLEQYIDVIVGRED 131
Cdd:pfam12710  79 EVALPrLHPGALELLAAHRAAGDRVVVVTGGLRPLVEPVLAELGFDEVLATELEVDD 135
Hydrolase_like pfam13242
HAD-hyrolase-like;
136-177 1.71e-03

HAD-hyrolase-like;


Pssm-ID: 433056 [Multi-domain]  Cd Length: 75  Bit Score: 36.05  E-value: 1.71e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1478338072 136 KPNPELYLTAVQRLNYNPVNCLAIEDSVngAT---AAVTAGLDVV 177
Cdd:pfam13242   4 KPNPGMLERALARLGLDPERTVMIGDRL--DTdilGAREAGARTI 46
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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