phosphomethylpyrimidine synthase ThiC catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
4-amino-2-methyl-5-hydroxymethylpyrimidine (HMP) synthase ThiC [Coenzyme transport and ...
146-604
0e+00
4-amino-2-methyl-5-hydroxymethylpyrimidine (HMP) synthase ThiC [Coenzyme transport and metabolism]; 4-amino-2-methyl-5-hydroxymethylpyrimidine (HMP) synthase ThiC is part of the Pathway/BioSystem: Thiamine biosynthesis
Pssm-ID: 440191 Cd Length: 430 Bit Score: 938.32 E-value: 0e+00
Radical SAM ThiC family; ThiC is found within the thiamine biosynthesis operon. ThiC is ...
148-596
0e+00
Radical SAM ThiC family; ThiC is found within the thiamine biosynthesis operon. ThiC is involved in pyrimidine biosynthesis. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis. Thic is a member of the radical SAM superfamily.
Pssm-ID: 460397 Cd Length: 420 Bit Score: 806.61 E-value: 0e+00
phosphomethylpyrimidine synthase; The thiC ortholog is designated thiA in Bacillus subtilis. ...
147-599
0e+00
phosphomethylpyrimidine synthase; The thiC ortholog is designated thiA in Bacillus subtilis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]
Pssm-ID: 129294 Cd Length: 423 Bit Score: 794.34 E-value: 0e+00
4-amino-2-methyl-5-hydroxymethylpyrimidine (HMP) synthase ThiC [Coenzyme transport and ...
146-604
0e+00
4-amino-2-methyl-5-hydroxymethylpyrimidine (HMP) synthase ThiC [Coenzyme transport and metabolism]; 4-amino-2-methyl-5-hydroxymethylpyrimidine (HMP) synthase ThiC is part of the Pathway/BioSystem: Thiamine biosynthesis
Pssm-ID: 440191 Cd Length: 430 Bit Score: 938.32 E-value: 0e+00
Radical SAM ThiC family; ThiC is found within the thiamine biosynthesis operon. ThiC is ...
148-596
0e+00
Radical SAM ThiC family; ThiC is found within the thiamine biosynthesis operon. ThiC is involved in pyrimidine biosynthesis. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis. Thic is a member of the radical SAM superfamily.
Pssm-ID: 460397 Cd Length: 420 Bit Score: 806.61 E-value: 0e+00
phosphomethylpyrimidine synthase; The thiC ortholog is designated thiA in Bacillus subtilis. ...
147-599
0e+00
phosphomethylpyrimidine synthase; The thiC ortholog is designated thiA in Bacillus subtilis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]
Pssm-ID: 129294 Cd Length: 423 Bit Score: 794.34 E-value: 0e+00
ThiC-like protein 1; Members of this protein family closely resemble ThiC, an enzyme that ...
148-596
3.21e-140
ThiC-like protein 1; Members of this protein family closely resemble ThiC, an enzyme that performs a complex rearrangement during thiamin biosynthesis, but instead occur as one of two adjacent additional paralogs to bona fide ThiC, in a conserved gene neighborhood with a pair of B12 binding domain/radical SAM domain proteins. Members of the ThiC family are non-canonical radical SAM enzymes, using a C-terminal Cys-rich motif to ligand a 4Fe-4S cluster that cleaves S-adenosylmethionine (SAM), but that sequence region does not belong to pfam04055.
Pssm-ID: 275179 Cd Length: 426 Bit Score: 414.94 E-value: 3.21e-140
Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
References:
Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
of the residues that compose this conserved feature have been mapped to the query sequence.
Click on the triangle to view details about the feature, including a multiple sequence alignment
of your query sequence and the protein sequences used to curate the domain model,
where hash marks (#) above the aligned sequences show the location of the conserved feature residues.
The thumbnail image, if present, provides an approximate view of the feature's location in 3 dimensions.
Click on the triangle for interactive 3D structure viewing options.
Functional characterization of the conserved domain architecture found on the query.
Click here to see more details.
This image shows a graphical summary of conserved domains identified on the query sequence.
The Show Concise/Full Display button at the top of the page can be used to select the desired level of detail: only top scoring hits
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(labeled illustration).
Domains are color coded according to superfamilies
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(specific hits) are drawn in bright colors.
Others (non-specific hits) and
superfamily placeholders are drawn in pastel colors.
if a domain or superfamily has been annotated with functional sites (conserved features),
they are mapped to the query sequence and indicated through sets of triangles
with the same color and shade of the domain or superfamily that provides the annotation. Mouse over the colored bars or triangles to see descriptions of the domains and features.
click on the bars or triangles to view your query sequence embedded in a multiple sequence alignment of the proteins used to develop the corresponding domain model.
The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores.
Click on the domain model's accession number to view the multiple sequence alignment of the proteins used to develop the corresponding domain model.
To view your query sequence embedded in that multiple sequence alignment, click on the colored bars in the Graphical Summary portion of the search results page,
or click on the triangles, if present, that represent functional sites (conserved features)
mapped to the query sequence.
Concise Display shows only the best scoring domain model, in each hit category listed below except non-specific hits, for each region on the query sequence.
(labeled illustration) Standard Display shows only the best scoring domain model from each source, in each hit category listed below for each region on the query sequence.
(labeled illustration) Full Display shows all domain models, in each hit category below, that meet or exceed the RPS-BLAST threshold for statistical significance.
(labeled illustration) Four types of hits can be shown, as available,
for each region on the query sequence:
specific hits meet or exceed a domain-specific e-value threshold
(illustrated example)
and represent a very high confidence that the query sequence belongs to the same protein family as the sequences use to create the domain model
non-specific hits
meet or exceed the RPS-BLAST threshold for statistical significance (default E-value cutoff of 0.01, or an E-value selected by user via the
advanced search options)
the domain superfamily to which the specific and non-specific hits belong
multi-domain models that were computationally detected and are likely to contain multiple single domains
Retrieve proteins that contain one or more of the domains present in the query sequence, using the Conserved Domain Architecture Retrieval Tool
(CDART).
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