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Conserved domains on  [gi|1476918593|gb|RIG41494|]
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YpfN family protein [Shigella boydii]

Protein Classification

YpfN family protein( domain architecture ID 10014313)

YpfN family protein similar to Escherichia coli UPF0370 protein YpfN

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK13664 PRK13664
hypothetical protein; Provisional
 1-62 3.26e-29

hypothetical protein; Provisional


:

Pssm-ID: 184221  Cd Length: 62  Bit Score: 97.84  E-value: 3.26e-29
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1476918593  1 MDWLAKYWWILVIVFLVGVLLNVIKDLKRVDHKKFLANKPELPPHRDFNDKWDDDDDWPKKD 62
Cdd:PRK13664   1 MDWLAKYWWILVLVFLVGVLLNVIKDLKRVDHKKFLANKPELPPHRDFNDKWDDEDDWPKKD 62
 
Name Accession Description Interval E-value
PRK13664 PRK13664
hypothetical protein; Provisional
 1-62 3.26e-29

hypothetical protein; Provisional


Pssm-ID: 184221  Cd Length: 62  Bit Score: 97.84  E-value: 3.26e-29
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1476918593  1 MDWLAKYWWILVIVFLVGVLLNVIKDLKRVDHKKFLANKPELPPHRDFNDKWDDDDDWPKKD 62
Cdd:PRK13664   1 MDWLAKYWWILVLVFLVGVLLNVIKDLKRVDHKKFLANKPELPPHRDFNDKWDDEDDWPKKD 62
UPF0370 pfam13980
Uncharacterized protein family (UPF0370); This family of proteins is functionally ...
 1-49 7.48e-21

Uncharacterized protein family (UPF0370); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 70 amino acids in length. There is a conserved DWP sequence motif.


Pssm-ID: 433622  Cd Length: 61  Bit Score: 76.74  E-value: 7.48e-21
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 1476918593  1 MDWLAKYWWIlVIVFLVGVLLNVIKDLKRVDHKKFLANKPELPPHRDFN 49
Cdd:pfam13980  1 MGWLADYWWV-ILLVLVGMLINGIKELRRVDHKRFLDNKPELPPHRDNN 48
 
Name Accession Description Interval E-value
PRK13664 PRK13664
hypothetical protein; Provisional
 1-62 3.26e-29

hypothetical protein; Provisional


Pssm-ID: 184221  Cd Length: 62  Bit Score: 97.84  E-value: 3.26e-29
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1476918593  1 MDWLAKYWWILVIVFLVGVLLNVIKDLKRVDHKKFLANKPELPPHRDFNDKWDDDDDWPKKD 62
Cdd:PRK13664   1 MDWLAKYWWILVLVFLVGVLLNVIKDLKRVDHKKFLANKPELPPHRDFNDKWDDEDDWPKKD 62
UPF0370 pfam13980
Uncharacterized protein family (UPF0370); This family of proteins is functionally ...
 1-49 7.48e-21

Uncharacterized protein family (UPF0370); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 70 amino acids in length. There is a conserved DWP sequence motif.


Pssm-ID: 433622  Cd Length: 61  Bit Score: 76.74  E-value: 7.48e-21
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 1476918593  1 MDWLAKYWWIlVIVFLVGVLLNVIKDLKRVDHKKFLANKPELPPHRDFN 49
Cdd:pfam13980  1 MGWLADYWWV-ILLVLVGMLINGIKELRRVDHKRFLDNKPELPPHRDNN 48
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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