|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10433 |
PRK10433 |
putative RNA methyltransferase; Provisional |
1-228 |
5.98e-157 |
|
putative RNA methyltransferase; Provisional
Pssm-ID: 236693 Cd Length: 228 Bit Score: 433.64 E-value: 5.98e-157
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1427247922 1 MRLTIILVGPARAENVGAAARAMKTMGFRELRIVDSEAHLAPPARWVAHGSGDILDGITTYPTLAEALHDVDFTVATTAR 80
Cdd:PRK10433 1 MRLTIILVAPARAENVGAAARAMKTMGFSELRIVDSQAHLEPAARWVAHGSGDILDNAKVFDTLAEALHDVDFTVATTAR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1427247922 81 SRARFHYYATPQQLLPLLEEKAQWMNHTALVFGREDAGLTNEELALADVLTGVPMAADYPSLNLGQSVMVYCYQLASLMQ 160
Cdd:PRK10433 81 SRAKFHYYATPAELVPLLEEKSSWMSHAALVFGREDSGLTNEELALADVLTGVPMAADYPSLNLGQAVMVYCYQLAGLMQ 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1427247922 161 QTAPAAAAADHHQLQALRTRTLALLSRLGVEDDAKLADWLSQRLGLLQQRDTAMLHRLLHDIEKNLPE 228
Cdd:PRK10433 161 QPAKSDTTADEGQLQALRQRAMRLLTTLGVADDEKLVDWLQQRLGLLEQRDTAMLHRLLHDIEKKLTK 228
|
|
| rRNA_methyl_1 |
TIGR00050 |
RNA methyltransferase, TrmH family, group 1; This is part of the trmH (spoU) family of ... |
1-224 |
1.16e-85 |
|
RNA methyltransferase, TrmH family, group 1; This is part of the trmH (spoU) family of S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases, and is now characterized, in E. coli, as a tRNA:Cm32/Um32 methyltransferase. It may be named TrMet(Xm32), or TrmJ, according to the nomenclature style chosen [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 272876 [Multi-domain] Cd Length: 233 Bit Score: 253.48 E-value: 1.16e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1427247922 1 MRLTIILVGPARAENVGAAARAMKTMGFRELRIVDSEAHLAPPARWVAHGSGDILDGITTYPTLAEALHDVDFTVATTAR 80
Cdd:TIGR00050 2 ENIRIVLVEPSHPGNIGSIARAMKNMGLTELRLVNPRVKLEEEAYALAAGARDILDNAKVVDTLDEALDDCDFVVGTSAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1427247922 81 SRARFHYYATPQQLLPLLEEKAqwmNHTALVFGREDAGLTNEELALADVLTGVPMAADYPSLNLGQSVMVYCYQL--ASL 158
Cdd:TIGR00050 82 SRNLQRPMLTPRELAPKLVAEK---GKVALVFGREDSGLTNEELQKCHVLVSIPTSEEYPSLNLSHAVAVILYELrmAWL 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1427247922 159 MQQTAPAAAAA-DHHQLQALRTRTLALLSRLGVEDDAK------LADWLSQRLGlLQQRDTAMLHRLLHDIEK 224
Cdd:TIGR00050 159 AQQENLSEMPYaTVDDLELLLEHLEETLLSLGFIPEHKprqvmrKFRRLYGRAG-LEKRELHILRGILRSIEK 230
|
|
| SpoU-like_TrmJ |
cd18093 |
SAM-dependent tRNA methylase related to TrmJ; tRNA methyltransferase TrmJ catalyzes the methyl ... |
3-155 |
1.44e-65 |
|
SAM-dependent tRNA methylase related to TrmJ; tRNA methyltransferase TrmJ catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 32 in both tRNASer1 and tRNAGln2. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349966 Cd Length: 153 Bit Score: 199.64 E-value: 1.44e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1427247922 3 LTIILVGPARAENVGAAARAMKTMGFRELRIVDSEAHLAPP-ARWVAHGSGDILDGITTYPTLAEALHDVDFTVATTARS 81
Cdd:cd18093 1 IRVVLVEPQHPGNIGAVARAMKNFGLSDLRLVNPRCDDPEEaARALASGAEDVLENAKVYDTLEEALADCDLVVATTARP 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1427247922 82 RARFHYYATPQQLLPLLEEKAQwMNHTALVFGREDAGLTNEELALADVLTGVPMAADYPSLNLGQSVMVYCYQL 155
Cdd:cd18093 81 RGLRRPLLTPRELAELLKEHAA-GGKVALVFGREDSGLTNEELALCDLLVTIPTNPEYPSLNLAQAVAIVLYEL 153
|
|
| TrmJ |
COG0565 |
tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase [Translation, ... |
1-227 |
1.12e-61 |
|
tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase [Translation, ribosomal structure and biogenesis]; tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440331 [Multi-domain] Cd Length: 237 Bit Score: 192.64 E-value: 1.12e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1427247922 1 MRLTIILVGPARAENVGAAARAMKTMGFRELRIVDSEAHLAPPARWVAHGSGDILDGITTYPTLAEALHDVDFTVATTAR 80
Cdd:COG0565 2 DNIRVVLVEPQHPGNIGAAARAMKNFGLSDLRLVNPRGWPDEEARAMASGADDVLENARVVDTLEEALADCDLVVGTTAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1427247922 81 SRARFHYYATPQQLLPLLEEKAQwmNH-TALVFGREDAGLTNEELALADVLTGVPMAADYPSLNLGQSVMVYCYQLASLM 159
Cdd:COG0565 82 PRELRKPVLTPREAAEELLARAA--GGkVALVFGRERSGLTNEELALCDALVTIPTNPEYPSLNLAQAVQVVAYELRKAA 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1427247922 160 QQTAPAAAAA-----DHHQLQALRTRTLALLSRLGVEDDAKlADWLSQRL------GLLQQRDTAMLHRLLHDIEKNLP 227
Cdd:COG0565 160 LEAPPLPPPPepepaTAEELEGLYEHLEELLDAIGFLDPEK-PEKLMRRLrrlfgrARLTEREVRTLRGILRALERRLK 237
|
|
| SpoU_methylase |
pfam00588 |
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. |
3-153 |
6.66e-32 |
|
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet.
Pssm-ID: 425768 Cd Length: 142 Bit Score: 113.39 E-value: 6.66e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1427247922 3 LTIILVGPARAENVGAAARAMKTMGFRELRIVD--SEAHLAPPARWVAHGSGDILDgITTYPTLAEALHDVDftvattar 80
Cdd:pfam00588 2 LVVVLDNIQDPGNLGAIIRTAAAFGADGLILVEprSADPYNPKAIRASAGALFHLP-LVVVDNLEEALKDLK-------- 72
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1427247922 81 sRARFHYYATPQQLLPLLEekAQWMNHTALVFGREDAGLTNEELALADVLTGVPMAADYPSLNLGQSVMVYCY 153
Cdd:pfam00588 73 -EAGYAVVATSLGGKSLYE--IDFPKKVALVFGNEGTGLSNEVLELCDRLVRIPMSGDVESLNVAVAAAIALY 142
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10433 |
PRK10433 |
putative RNA methyltransferase; Provisional |
1-228 |
5.98e-157 |
|
putative RNA methyltransferase; Provisional
Pssm-ID: 236693 Cd Length: 228 Bit Score: 433.64 E-value: 5.98e-157
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1427247922 1 MRLTIILVGPARAENVGAAARAMKTMGFRELRIVDSEAHLAPPARWVAHGSGDILDGITTYPTLAEALHDVDFTVATTAR 80
Cdd:PRK10433 1 MRLTIILVAPARAENVGAAARAMKTMGFSELRIVDSQAHLEPAARWVAHGSGDILDNAKVFDTLAEALHDVDFTVATTAR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1427247922 81 SRARFHYYATPQQLLPLLEEKAQWMNHTALVFGREDAGLTNEELALADVLTGVPMAADYPSLNLGQSVMVYCYQLASLMQ 160
Cdd:PRK10433 81 SRAKFHYYATPAELVPLLEEKSSWMSHAALVFGREDSGLTNEELALADVLTGVPMAADYPSLNLGQAVMVYCYQLAGLMQ 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1427247922 161 QTAPAAAAADHHQLQALRTRTLALLSRLGVEDDAKLADWLSQRLGLLQQRDTAMLHRLLHDIEKNLPE 228
Cdd:PRK10433 161 QPAKSDTTADEGQLQALRQRAMRLLTTLGVADDEKLVDWLQQRLGLLEQRDTAMLHRLLHDIEKKLTK 228
|
|
| rRNA_methyl_1 |
TIGR00050 |
RNA methyltransferase, TrmH family, group 1; This is part of the trmH (spoU) family of ... |
1-224 |
1.16e-85 |
|
RNA methyltransferase, TrmH family, group 1; This is part of the trmH (spoU) family of S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases, and is now characterized, in E. coli, as a tRNA:Cm32/Um32 methyltransferase. It may be named TrMet(Xm32), or TrmJ, according to the nomenclature style chosen [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 272876 [Multi-domain] Cd Length: 233 Bit Score: 253.48 E-value: 1.16e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1427247922 1 MRLTIILVGPARAENVGAAARAMKTMGFRELRIVDSEAHLAPPARWVAHGSGDILDGITTYPTLAEALHDVDFTVATTAR 80
Cdd:TIGR00050 2 ENIRIVLVEPSHPGNIGSIARAMKNMGLTELRLVNPRVKLEEEAYALAAGARDILDNAKVVDTLDEALDDCDFVVGTSAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1427247922 81 SRARFHYYATPQQLLPLLEEKAqwmNHTALVFGREDAGLTNEELALADVLTGVPMAADYPSLNLGQSVMVYCYQL--ASL 158
Cdd:TIGR00050 82 SRNLQRPMLTPRELAPKLVAEK---GKVALVFGREDSGLTNEELQKCHVLVSIPTSEEYPSLNLSHAVAVILYELrmAWL 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1427247922 159 MQQTAPAAAAA-DHHQLQALRTRTLALLSRLGVEDDAK------LADWLSQRLGlLQQRDTAMLHRLLHDIEK 224
Cdd:TIGR00050 159 AQQENLSEMPYaTVDDLELLLEHLEETLLSLGFIPEHKprqvmrKFRRLYGRAG-LEKRELHILRGILRSIEK 230
|
|
| SpoU-like_TrmJ |
cd18093 |
SAM-dependent tRNA methylase related to TrmJ; tRNA methyltransferase TrmJ catalyzes the methyl ... |
3-155 |
1.44e-65 |
|
SAM-dependent tRNA methylase related to TrmJ; tRNA methyltransferase TrmJ catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 32 in both tRNASer1 and tRNAGln2. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349966 Cd Length: 153 Bit Score: 199.64 E-value: 1.44e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1427247922 3 LTIILVGPARAENVGAAARAMKTMGFRELRIVDSEAHLAPP-ARWVAHGSGDILDGITTYPTLAEALHDVDFTVATTARS 81
Cdd:cd18093 1 IRVVLVEPQHPGNIGAVARAMKNFGLSDLRLVNPRCDDPEEaARALASGAEDVLENAKVYDTLEEALADCDLVVATTARP 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1427247922 82 RARFHYYATPQQLLPLLEEKAQwMNHTALVFGREDAGLTNEELALADVLTGVPMAADYPSLNLGQSVMVYCYQL 155
Cdd:cd18093 81 RGLRRPLLTPRELAELLKEHAA-GGKVALVFGREDSGLTNEELALCDLLVTIPTNPEYPSLNLAQAVAIVLYEL 153
|
|
| TrmJ |
COG0565 |
tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase [Translation, ... |
1-227 |
1.12e-61 |
|
tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase [Translation, ribosomal structure and biogenesis]; tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440331 [Multi-domain] Cd Length: 237 Bit Score: 192.64 E-value: 1.12e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1427247922 1 MRLTIILVGPARAENVGAAARAMKTMGFRELRIVDSEAHLAPPARWVAHGSGDILDGITTYPTLAEALHDVDFTVATTAR 80
Cdd:COG0565 2 DNIRVVLVEPQHPGNIGAAARAMKNFGLSDLRLVNPRGWPDEEARAMASGADDVLENARVVDTLEEALADCDLVVGTTAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1427247922 81 SRARFHYYATPQQLLPLLEEKAQwmNH-TALVFGREDAGLTNEELALADVLTGVPMAADYPSLNLGQSVMVYCYQLASLM 159
Cdd:COG0565 82 PRELRKPVLTPREAAEELLARAA--GGkVALVFGRERSGLTNEELALCDALVTIPTNPEYPSLNLAQAVQVVAYELRKAA 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1427247922 160 QQTAPAAAAA-----DHHQLQALRTRTLALLSRLGVEDDAKlADWLSQRL------GLLQQRDTAMLHRLLHDIEKNLP 227
Cdd:COG0565 160 LEAPPLPPPPepepaTAEELEGLYEHLEELLDAIGFLDPEK-PEKLMRRLrrlfgrARLTEREVRTLRGILRALERRLK 237
|
|
| SpoU_methylase |
pfam00588 |
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. |
3-153 |
6.66e-32 |
|
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet.
Pssm-ID: 425768 Cd Length: 142 Bit Score: 113.39 E-value: 6.66e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1427247922 3 LTIILVGPARAENVGAAARAMKTMGFRELRIVD--SEAHLAPPARWVAHGSGDILDgITTYPTLAEALHDVDftvattar 80
Cdd:pfam00588 2 LVVVLDNIQDPGNLGAIIRTAAAFGADGLILVEprSADPYNPKAIRASAGALFHLP-LVVVDNLEEALKDLK-------- 72
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1427247922 81 sRARFHYYATPQQLLPLLEekAQWMNHTALVFGREDAGLTNEELALADVLTGVPMAADYPSLNLGQSVMVYCY 153
Cdd:pfam00588 73 -EAGYAVVATSLGGKSLYE--IDFPKKVALVFGNEGTGLSNEVLELCDRLVRIPMSGDVESLNVAVAAAIALY 142
|
|
| PRK15114 |
PRK15114 |
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional |
5-161 |
4.22e-19 |
|
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional
Pssm-ID: 185069 Cd Length: 245 Bit Score: 82.88 E-value: 4.22e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1427247922 5 IILVGPARAENVGAAARAMKTMGFRELRIVDSEAHLAPPARWVAHGSGDILDGITTYPTLAEALHDVDFTVATTARSRAr 84
Cdd:PRK15114 7 IVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQAIALAAGASDVIGNATIVDTLDEALAGCSLVVGTSARSRT- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1427247922 85 fhyyaTPqqlLPLLEEK------AQWMNHT--ALVFGREDAGLTNEELALADVLTGVPMAADYPSLNLGQSVMVYCYQ-- 154
Cdd:PRK15114 86 -----LP---WPMLDPRecglksVAEAANApvALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEvr 157
|
....*..
gi 1427247922 155 LASLMQQ 161
Cdd:PRK15114 158 MAWLATQ 164
|
|
| SpoU-like_family |
cd18082 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
4-155 |
1.76e-14 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349955 Cd Length: 145 Bit Score: 68.02 E-value: 1.76e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1427247922 4 TIILVGPARAENVGAAARAMKTMGFRELRIVDSEAHLAPP-ARWVAHGSGDILDgITTYPTLAEALHDVD------FTVA 76
Cdd:cd18082 1 HLVLDNIRSPGNIGSIFRTADAFGVEKIYLVGPTADIFDPkAKRTSRGTHFSVP-YERVDNFEEYLKSLKeegyplIGLE 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1427247922 77 TTARSrarfhyyATPQQLLPLLEEKaqwmnhTALVFGREDAGLTNEELALADVLTGVPMAADYPSLNLGQSVMVYCYQL 155
Cdd:cd18082 80 LTDGS-------IPLSEFKFKKPKK------IALIFGNERSGLSPELLALCDYTVHIPMSGKNSSLNVSVATGIALYEF 145
|
|
| SpoU-like_TrmH |
cd18092 |
SAM-dependent tRNA methylase related to TrmH; TrmH catalyzes the transfer of the methyl group ... |
2-148 |
6.05e-05 |
|
SAM-dependent tRNA methylase related to TrmH; TrmH catalyzes the transfer of the methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the ribose of the universally conserved guanosine 18 (G18) position in tRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349965 Cd Length: 162 Bit Score: 42.07 E-value: 6.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1427247922 2 RLTIILVGPARAENVGAAARAMKTMGFRELRIVDSEaHLAPPARWVAHGSGDILDgITTYPTLAEALHDV---DFT-VAT 77
Cdd:cd18092 16 DLTVVLENVHDPHNASAVLRTCDAFGVQDVHVIEPK-NKFKKNRGVAMGADKWLD-VHRHDSTEECLAALkeqGYRiVAT 93
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1427247922 78 TARSRARFHY---YATPqqllplleekaqwmnhTALVFGREDAGLTNEELALADVLTGVPMAADYPSLNLgqSV 148
Cdd:cd18092 94 SLSPDAVPLDeldYTRP----------------TALVFGNEKDGVSEEALAAADERVYIPMYGFVESLNV--SV 149
|
|
| SpoU-like_rRNA-MTase |
cd18095 |
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
87-155 |
7.16e-05 |
|
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349968 Cd Length: 143 Bit Score: 41.64 E-value: 7.16e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1427247922 87 YYATPQQLLPLLEEKaqWMNHTALVFGREDAGLTNEELALADVLTGVPMAADYPSLNLGQSVMVYCYQL 155
Cdd:cd18095 77 VAADLDGGSSLYDLD--LPKPVALVLGNEGNGLSDELLELCDKRVTIPMSGGVESLNVAVAAAILLYEL 143
|
|
| SpoU-like |
cd18097 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
3-155 |
1.95e-04 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349970 Cd Length: 144 Bit Score: 40.24 E-value: 1.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1427247922 3 LTIILVGPARAENVGAAARAMKTMGFRELrivdseahlapparwvahgsgdILDGITTYPTlaealhdvDFTVATTARSR 82
Cdd:cd18097 1 LVVVLDNLRSAHNVGSIFRTADAAGVEKI----------------------YLCGYTPTPP--------HPKVAKTALGA 50
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1427247922 83 ARF---HYYATPQQLLPLLEEK------------------AQWMNHTALVFGREDAGLTNEELALADVLTGVPMAADYPS 141
Cdd:cd18097 51 EESvpwEHFEDTLEAVRALKARgytiialettensvplheARLPRPLALVLGNEVRGVSPEVLALCDAVVEIPMFGRKNS 130
|
170
....*....|....
gi 1427247922 142 LNLGQSVMVYCYQL 155
Cdd:cd18097 131 LNVAVAAAVALYEL 144
|
|
| SpoU-like_RNA-MTase |
cd18104 |
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
107-161 |
3.54e-04 |
|
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349977 Cd Length: 146 Bit Score: 39.49 E-value: 3.54e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1427247922 107 HTALVFGREDAGLTNEELALADVLTGVPMAADYPSLNLGQSVMVYCYQlaSLMQQ 161
Cdd:cd18104 94 PIAIVVGSESEGLSEFWLKAADERVRIPMAGQADSLNVSVAAAILLYE--ALRQR 146
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| SpoU |
COG0566 |
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA ... |
108-151 |
1.88e-03 |
|
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA G18 (ribose-2'-O)-methylase SpoU is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440332 [Multi-domain] Cd Length: 265 Bit Score: 38.25 E-value: 1.88e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1427247922 108 TALVFGREDAGLTNEELALADVLTGVPMAADYPSLNLGQ--SVMVY 151
Cdd:COG0566 211 VALVLGNEGKGLSRLVLEACDELVRIPMAGGVESLNVAVaaAILLY 256
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