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Conserved domains on  [gi|2089724502|gb|QZX51765|]
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pumilio family protein, partial [Chlamydomonas schloesseri]

Protein Classification

Pumilio-family RNA binding repeat-containing protein( domain architecture ID 1001700)

Pumilio-family RNA binding repeat-containing protein harbors PUF repeats, which mediate sequence specific RNA binding

CATH:  1.25.10.10
Gene Ontology:  GO:0003723
PubMed:  14584586|29385744
SCOP:  4003086

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Pumilio super family cl46378
Pumilio-family RNA binding domain; Puf repeats (also labelled PUM-HD or Pumilio homology ...
 114-357 1.62e-10

Pumilio-family RNA binding domain; Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canonical) repeats.


The actual alignment was detected with superfamily member cd07920:

Pssm-ID: 480718 [Multi-domain]  Cd Length: 322  Bit Score: 63.38  E-value: 1.62e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089724502 114 KGKLLELVNHHTASRVIQFCIKHGGEAERKAVMEEVRANIVELSKSKYGHFLVRKLVNTAKKDEVPGIVRLFRGHVAQLL 193
Cdd:cd07920     9 AGHIVEFAKDQHGSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLS 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089724502 194 RQPYGADVITDLYDVASTADRNAMCSEfygkefvlfdgLTGEAGRL-------HSLQQLMAGAPAAKKRAILQHFAKSLI 266
Cdd:cd07920    89 LDMYGCRVIQKLLESISEEQISLLVKE-----------LRGHVVELvkdqngnHVIQKCIEKFPPEDLQFIIDAFKGNCV 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089724502 267 PIMekalvhppiTH----RLVKDYLE-CStgmtvEEAVETLSatgEALLRMVHT------------HegaaaacmVLAYG 329
Cdd:cd07920   158 ALS---------THpygcRVIQRCLEhCS-----EEQREPLL---EEILEHALElvqdqfgnyvvqH--------VLELG 212

                         250       260
                  ....*....|....*....|....*....
gi 2089724502 330 TPKDRKKVVRAMKGHVAKMAADEWG-HVV 357
Cdd:cd07920   213 DPDDTSRIIEKLLGNIVQLSCHKFAsNVV 241
 
Name Accession Description Interval E-value
Pumilio cd07920
Pumilio-family RNA binding domain; Puf repeats (also labelled PUM-HD or Pumilio homology ...
 114-357 1.62e-10

Pumilio-family RNA binding domain; Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canonical) repeats.


Pssm-ID: 153420 [Multi-domain]  Cd Length: 322  Bit Score: 63.38  E-value: 1.62e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089724502 114 KGKLLELVNHHTASRVIQFCIKHGGEAERKAVMEEVRANIVELSKSKYGHFLVRKLVNTAKKDEVPGIVRLFRGHVAQLL 193
Cdd:cd07920     9 AGHIVEFAKDQHGSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLS 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089724502 194 RQPYGADVITDLYDVASTADRNAMCSEfygkefvlfdgLTGEAGRL-------HSLQQLMAGAPAAKKRAILQHFAKSLI 266
Cdd:cd07920    89 LDMYGCRVIQKLLESISEEQISLLVKE-----------LRGHVVELvkdqngnHVIQKCIEKFPPEDLQFIIDAFKGNCV 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089724502 267 PIMekalvhppiTH----RLVKDYLE-CStgmtvEEAVETLSatgEALLRMVHT------------HegaaaacmVLAYG 329
Cdd:cd07920   158 ALS---------THpygcRVIQRCLEhCS-----EEQREPLL---EEILEHALElvqdqfgnyvvqH--------VLELG 212

                         250       260
                  ....*....|....*....|....*....
gi 2089724502 330 TPKDRKKVVRAMKGHVAKMAADEWG-HVV 357
Cdd:cd07920   213 DPDDTSRIIEKLLGNIVQLSCHKFAsNVV 241
PUF pfam00806
Pumilio-family RNA binding repeat; Puf repeats (aka PUM-HD, Pumilio homology domain) are ...
 118-149 4.62e-03

Pumilio-family RNA binding repeat; Puf repeats (aka PUM-HD, Pumilio homology domain) are necessary and sufficient for sequence specific RNA binding in fly Pumilio and worm FBF-1 and FBF-2. Both proteins function as translational repressors in early embryonic development by binding sequences in the 3' UTR of target mRNAs (e.g. the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA). Other proteins that contain Puf domains are also plausible RNA binding proteins. Swiss:P47135, for instance, appears to also contain a single RRM domain by HMM analysis. Puf domains usually occur as a tandem repeat of 8 domains. The Pfam model does not necessarily recognize all 8 repeats in all sequences; some sequences appear to have 5 or 6 repeats on initial analysis, but further analysis suggests the presence of additional divergent repeats. Structures of PUF repeat proteins show they consist of a two helix structure.


Pssm-ID: 459944 [Multi-domain]  Cd Length: 35  Bit Score: 35.35  E-value: 4.62e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 2089724502 118 LELVNHHTASRVIQFCIKHGGEAERKAVMEEV 149
Cdd:pfam00806   3 VELATDQYGCRVIQKCLEHATEEQREQILDEI 34
 
Name Accession Description Interval E-value
Pumilio cd07920
Pumilio-family RNA binding domain; Puf repeats (also labelled PUM-HD or Pumilio homology ...
 114-357 1.62e-10

Pumilio-family RNA binding domain; Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canonical) repeats.


Pssm-ID: 153420 [Multi-domain]  Cd Length: 322  Bit Score: 63.38  E-value: 1.62e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089724502 114 KGKLLELVNHHTASRVIQFCIKHGGEAERKAVMEEVRANIVELSKSKYGHFLVRKLVNTAKKDEVPGIVRLFRGHVAQLL 193
Cdd:cd07920     9 AGHIVEFAKDQHGSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLS 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089724502 194 RQPYGADVITDLYDVASTADRNAMCSEfygkefvlfdgLTGEAGRL-------HSLQQLMAGAPAAKKRAILQHFAKSLI 266
Cdd:cd07920    89 LDMYGCRVIQKLLESISEEQISLLVKE-----------LRGHVVELvkdqngnHVIQKCIEKFPPEDLQFIIDAFKGNCV 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089724502 267 PIMekalvhppiTH----RLVKDYLE-CStgmtvEEAVETLSatgEALLRMVHT------------HegaaaacmVLAYG 329
Cdd:cd07920   158 ALS---------THpygcRVIQRCLEhCS-----EEQREPLL---EEILEHALElvqdqfgnyvvqH--------VLELG 212

                         250       260
                  ....*....|....*....|....*....
gi 2089724502 330 TPKDRKKVVRAMKGHVAKMAADEWG-HVV 357
Cdd:cd07920   213 DPDDTSRIIEKLLGNIVQLSCHKFAsNVV 241
Pumilio cd07920
Pumilio-family RNA binding domain; Puf repeats (also labelled PUM-HD or Pumilio homology ...
 99-220 1.87e-10

Pumilio-family RNA binding domain; Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canonical) repeats.


Pssm-ID: 153420 [Multi-domain]  Cd Length: 322  Bit Score: 62.99  E-value: 1.87e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089724502  99 DAERRQLvndILKKVKGKLLELVNHHTASRVIQFCIKHGGEAERKAVMEEVRANIVELSKSKYGHFLVRKLVNTAKKDEV 178
Cdd:cd07920    69 TEEQRLQ---LLEKILGHVVRLSLDMYGCRVIQKLLESISEEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDL 145

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 2089724502 179 PGIVRLFRGHVAQLLRQPYGADVITDLYDVASTADRNAMCSE 220
Cdd:cd07920   146 QFIIDAFKGNCVALSTHPYGCRVIQRCLEHCSEEQREPLLEE 187
Pumilio cd07920
Pumilio-family RNA binding domain; Puf repeats (also labelled PUM-HD or Pumilio homology ...
 109-246 1.67e-09

Pumilio-family RNA binding domain; Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canonical) repeats.


Pssm-ID: 153420 [Multi-domain]  Cd Length: 322  Bit Score: 60.30  E-value: 1.67e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089724502 109 ILKKVKGKLLELVNHHTASRVIQFCIKHGGEAERKAVMEEVRANIVELSKSKYGHFLVRKLVNTAKKDEVPGIVRLFRGH 188
Cdd:cd07920   148 IIDAFKGNCVALSTHPYGCRVIQRCLEHCSEEQREPLLEEILEHALELVQDQFGNYVVQHVLELGDPDDTSRIIEKLLGN 227

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2089724502 189 VAQLLRQPYGADVITDLYDVASTADRNAMCSEFygkefvlfdglTGEAGRLHSLQQLM 246
Cdd:cd07920   228 IVQLSCHKFASNVVEKCLKHASKEERELIIDEI-----------LASGNETSALDTLM 274
Pumilio cd07920
Pumilio-family RNA binding domain; Puf repeats (also labelled PUM-HD or Pumilio homology ...
 107-198 6.09e-09

Pumilio-family RNA binding domain; Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canonical) repeats.


Pssm-ID: 153420 [Multi-domain]  Cd Length: 322  Bit Score: 58.37  E-value: 6.09e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089724502 107 NDILKKVKGKLLELVNHHTASRVIQFCIKHGGEAERKAVMEEV------RANIVELSKSKYGHFLVRKLVNTAKKDEVPG 180
Cdd:cd07920   218 SRIIEKLLGNIVQLSCHKFASNVVEKCLKHASKEERELIIDEIlasgneTSALDTLMKDQYGNYVIQTALDVAKEEQREL 297

                          90
                  ....*....|....*...
gi 2089724502 181 IVRLFRGHVAQLLRQPYG 198
Cdd:cd07920   298 LVEAIRPHLPSLRKSPYG 315
Pumilio cd07920
Pumilio-family RNA binding domain; Puf repeats (also labelled PUM-HD or Pumilio homology ...
 100-215 7.35e-09

Pumilio-family RNA binding domain; Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canonical) repeats.


Pssm-ID: 153420 [Multi-domain]  Cd Length: 322  Bit Score: 57.99  E-value: 7.35e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089724502 100 AERRQLVNDILKKVkgklLELVNHHTASRVIQFCIKHGGEAERKAVMEEVRANIVELSKSKYGHFLVRKLVNTAKKDE-V 178
Cdd:cd07920   179 EQREPLLEEILEHA----LELVQDQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQLSCHKFASNVVEKCLKHASKEErE 254

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 2089724502 179 PGIVRLF-----RGHVAQLLRQPYGADVITDLYDVASTADRN 215
Cdd:cd07920   255 LIIDEILasgneTSALDTLMKDQYGNYVIQTALDVAKEEQRE 296
Pumilio cd07920
Pumilio-family RNA binding domain; Puf repeats (also labelled PUM-HD or Pumilio homology ...
 109-224 1.15e-08

Pumilio-family RNA binding domain; Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canonical) repeats.


Pssm-ID: 153420 [Multi-domain]  Cd Length: 322  Bit Score: 57.60  E-value: 1.15e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089724502 109 ILKKVKGKLLELVNHHTASRVIQFCIKHGGEAERKAVMEEVRANIVELSKSKYGHFLVRKLVNTAKKDEVPGIVRLFRGH 188
Cdd:cd07920   112 LVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVALSTHPYGCRVIQRCLEHCSEEQREPLLEEILEH 191

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2089724502 189 VAQLLRQPYGADVITDLYDVASTADRNAMCSEFYGK 224
Cdd:cd07920   192 ALELVQDQFGNYVVQHVLELGDPDDTSRIIEKLLGN 227
Pumilio cd07920
Pumilio-family RNA binding domain; Puf repeats (also labelled PUM-HD or Pumilio homology ...
 96-228 2.04e-08

Pumilio-family RNA binding domain; Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canonical) repeats.


Pssm-ID: 153420 [Multi-domain]  Cd Length: 322  Bit Score: 56.83  E-value: 2.04e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089724502  96 ETPDAERRQLVNDIlkkVKGKLLELVNHHTASRVIQFCIKHGGEAERKAVMEEVRANIVELSKSKYGHFLVRKLVNTAKK 175
Cdd:cd07920    30 EEATPEEKELIFDE---ILPHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLDMYGCRVIQKLLESISE 106

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2089724502 176 DEVPGIVRLFRGHVAQLLRQPYGADVITDLYDVASTADRNAMCSEFYGKEFVL 228
Cdd:cd07920   107 EQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVAL 159
PUF pfam00806
Pumilio-family RNA binding repeat; Puf repeats (aka PUM-HD, Pumilio homology domain) are ...
 118-149 4.62e-03

Pumilio-family RNA binding repeat; Puf repeats (aka PUM-HD, Pumilio homology domain) are necessary and sufficient for sequence specific RNA binding in fly Pumilio and worm FBF-1 and FBF-2. Both proteins function as translational repressors in early embryonic development by binding sequences in the 3' UTR of target mRNAs (e.g. the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA). Other proteins that contain Puf domains are also plausible RNA binding proteins. Swiss:P47135, for instance, appears to also contain a single RRM domain by HMM analysis. Puf domains usually occur as a tandem repeat of 8 domains. The Pfam model does not necessarily recognize all 8 repeats in all sequences; some sequences appear to have 5 or 6 repeats on initial analysis, but further analysis suggests the presence of additional divergent repeats. Structures of PUF repeat proteins show they consist of a two helix structure.


Pssm-ID: 459944 [Multi-domain]  Cd Length: 35  Bit Score: 35.35  E-value: 4.62e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 2089724502 118 LELVNHHTASRVIQFCIKHGGEAERKAVMEEV 149
Cdd:pfam00806   3 VELATDQYGCRVIQKCLEHATEEQREQILDEI 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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