NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2071640620|gb|QXV07567|]
View 

YppE family protein [Staphylococcus epidermidis]

Protein Classification

YppE family protein( domain architecture ID 10555967)

YppE family protein is a DUF1798 domain-containing protein; similar to Bacillus subtilis protein YppE

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF1798 pfam08807
Bacterial domain of unknown function (DUF1798); This domain is found in many hypothetical ...
 5-107 6.33e-35

Bacterial domain of unknown function (DUF1798); This domain is found in many hypothetical proteins. The structure of one of the proteins in this family has been solved and it adopts an all alpha helical fold.


:

Pssm-ID: 400936  Cd Length: 108  Bit Score: 115.82  E-value: 6.33e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2071640620   5 IKQLLEDIDEMNYRYQHVKINGGSFDFYKDVEPYVKNIDNHLEALNCYSKSITET---QYMSQQKLDILILNIQKLSVDC 81
Cdd:pfam08807   1 TEQLLQYNEEAEERYQEVKEEGKEPDFFQDVKPFVDEVDQLLDEWKELALEWIKKerpKYLHEQQIEATIENIELLSVQS 80

                          90       100
                  ....*....|....*....|....*.
gi 2071640620  82 HFPRTSRKLFVEKLKSAQYDLKNILS 107
Cdd:pfam08807  81 FYPKTSKKRFKELYKSVKYTLQLILE 106
 
Name Accession Description Interval E-value
DUF1798 pfam08807
Bacterial domain of unknown function (DUF1798); This domain is found in many hypothetical ...
 5-107 6.33e-35

Bacterial domain of unknown function (DUF1798); This domain is found in many hypothetical proteins. The structure of one of the proteins in this family has been solved and it adopts an all alpha helical fold.


Pssm-ID: 400936  Cd Length: 108  Bit Score: 115.82  E-value: 6.33e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2071640620   5 IKQLLEDIDEMNYRYQHVKINGGSFDFYKDVEPYVKNIDNHLEALNCYSKSITET---QYMSQQKLDILILNIQKLSVDC 81
Cdd:pfam08807   1 TEQLLQYNEEAEERYQEVKEEGKEPDFFQDVKPFVDEVDQLLDEWKELALEWIKKerpKYLHEQQIEATIENIELLSVQS 80

                          90       100
                  ....*....|....*....|....*.
gi 2071640620  82 HFPRTSRKLFVEKLKSAQYDLKNILS 107
Cdd:pfam08807  81 FYPKTSKKRFKELYKSVKYTLQLILE 106
 
Name Accession Description Interval E-value
DUF1798 pfam08807
Bacterial domain of unknown function (DUF1798); This domain is found in many hypothetical ...
 5-107 6.33e-35

Bacterial domain of unknown function (DUF1798); This domain is found in many hypothetical proteins. The structure of one of the proteins in this family has been solved and it adopts an all alpha helical fold.


Pssm-ID: 400936  Cd Length: 108  Bit Score: 115.82  E-value: 6.33e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2071640620   5 IKQLLEDIDEMNYRYQHVKINGGSFDFYKDVEPYVKNIDNHLEALNCYSKSITET---QYMSQQKLDILILNIQKLSVDC 81
Cdd:pfam08807   1 TEQLLQYNEEAEERYQEVKEEGKEPDFFQDVKPFVDEVDQLLDEWKELALEWIKKerpKYLHEQQIEATIENIELLSVQS 80

                          90       100
                  ....*....|....*....|....*.
gi 2071640620  82 HFPRTSRKLFVEKLKSAQYDLKNILS 107
Cdd:pfam08807  81 FYPKTSKKRFKELYKSVKYTLQLILE 106
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH