NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2056231290|gb|QWW04349|]
View 

protein DsrB [Salmonella enterica subsp. enterica serovar Bovismorbificans str. Sal610]

Protein Classification

protein DsrB( domain architecture ID 10013609)

protein DsrB is essential for the low temperature expression of RpoS during exponential growth

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK10708 PRK10708
protein DsrB;
1-62 1.58e-43

protein DsrB;


:

Pssm-ID: 182664  Cd Length: 62  Bit Score: 134.05  E-value: 1.58e-43
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2056231290  1 MKVNDRVTVKTDGGPRRPGVVLAVEEFSEGTMYLVSLEDYPLGIWFFNESGHQDGIFVEKAE 62
Cdd:PRK10708   1 MKVNDRVTVKTDGGPRRPGVVLAVEEFSEGTMYLVSLEDYPLGIWFFNEAGHQDGIFVEKAE 62
 
Name Accession Description Interval E-value
PRK10708 PRK10708
protein DsrB;
1-62 1.58e-43

protein DsrB;


Pssm-ID: 182664  Cd Length: 62  Bit Score: 134.05  E-value: 1.58e-43
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2056231290  1 MKVNDRVTVKTDGGPRRPGVVLAVEEFSEGTMYLVSLEDYPLGIWFFNESGHQDGIFVEKAE 62
Cdd:PRK10708   1 MKVNDRVTVKTDGGPRRPGVVLAVEEFSEGTMYLVSLEDYPLGIWFFNEAGHQDGIFVEKAE 62
DSRB pfam10781
Dextransucrase DSRB; DSRB is a novel dextransucrase which produces a dextran different from ...
 1-59 8.75e-30

Dextransucrase DSRB; DSRB is a novel dextransucrase which produces a dextran different from the typical dextran, as it contains (1-6) and (1-2) linkages, when this strain is grown in the presence of sucrose.


Pssm-ID: 431492  Cd Length: 61  Bit Score: 99.14  E-value: 8.75e-30
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 2056231290  1 MKVNDRVTVKTDGGPRRPGVVLAVEEFSEGTMYLVSLEDYPLGIWFFNESGHQDGIFVE 59
Cdd:pfam10781  1 MKVNDTVTVKTDGDERREGVILAVEPFSEGVMYLVALEDYPEGIWFFNEVDSGDGVFVE 59
 
Name Accession Description Interval E-value
PRK10708 PRK10708
protein DsrB;
1-62 1.58e-43

protein DsrB;


Pssm-ID: 182664  Cd Length: 62  Bit Score: 134.05  E-value: 1.58e-43
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2056231290  1 MKVNDRVTVKTDGGPRRPGVVLAVEEFSEGTMYLVSLEDYPLGIWFFNESGHQDGIFVEKAE 62
Cdd:PRK10708   1 MKVNDRVTVKTDGGPRRPGVVLAVEEFSEGTMYLVSLEDYPLGIWFFNEAGHQDGIFVEKAE 62
DSRB pfam10781
Dextransucrase DSRB; DSRB is a novel dextransucrase which produces a dextran different from ...
 1-59 8.75e-30

Dextransucrase DSRB; DSRB is a novel dextransucrase which produces a dextran different from the typical dextran, as it contains (1-6) and (1-2) linkages, when this strain is grown in the presence of sucrose.


Pssm-ID: 431492  Cd Length: 61  Bit Score: 99.14  E-value: 8.75e-30
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 2056231290  1 MKVNDRVTVKTDGGPRRPGVVLAVEEFSEGTMYLVSLEDYPLGIWFFNESGHQDGIFVE 59
Cdd:pfam10781  1 MKVNDTVTVKTDGDERREGVILAVEPFSEGVMYLVALEDYPEGIWFFNEVDSGDGVFVE 59
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH