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Conserved domains on  [gi|2028841199|gb|QUB48674|]
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DUF4141 domain-containing protein [Prevotella nigrescens]

Protein Classification

DUF4141 domain-containing protein( domain architecture ID 10612915)

DUF4141 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4141 pfam13605
Domain of unknown function (DUF4141); Based on Bacteroides thetaiotaomicron gene BT_4772, a ...
 4-56 1.77e-30

Domain of unknown function (DUF4141); Based on Bacteroides thetaiotaomicron gene BT_4772, a putative uncharacterized protein. As seen in gene expression experiments (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE2231), it appears to be upregulated in the presence of host or vs when in culture.


:

Pssm-ID: 433344 [Multi-domain]  Cd Length: 53  Bit Score: 106.25  E-value: 1.77e-30
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2028841199   4 KILMLMACGCLLAGSAHAQWVVTDPTNLAQSIINTTKEIVQTSKTVKNTLDNF 56
Cdd:pfam13605   1 KILLLCLVLLLFTGKAHAQWVVTDPGNLAQSIINTSKEIVQTSKTASNTLKNF 53
 
Name Accession Description Interval E-value
DUF4141 pfam13605
Domain of unknown function (DUF4141); Based on Bacteroides thetaiotaomicron gene BT_4772, a ...
 4-56 1.77e-30

Domain of unknown function (DUF4141); Based on Bacteroides thetaiotaomicron gene BT_4772, a putative uncharacterized protein. As seen in gene expression experiments (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE2231), it appears to be upregulated in the presence of host or vs when in culture.


Pssm-ID: 433344 [Multi-domain]  Cd Length: 53  Bit Score: 106.25  E-value: 1.77e-30
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2028841199   4 KILMLMACGCLLAGSAHAQWVVTDPTNLAQSIINTTKEIVQTSKTVKNTLDNF 56
Cdd:pfam13605   1 KILLLCLVLLLFTGKAHAQWVVTDPGNLAQSIINTSKEIVQTSKTASNTLKNF 53
COG5314 COG5314
Conjugal transfer/entry exclusion protein [Mobilome: prophages, transposons];
2-86 3.40e-05

Conjugal transfer/entry exclusion protein [Mobilome: prophages, transposons];


Pssm-ID: 444109  Cd Length: 249  Bit Score: 43.36  E-value: 3.40e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028841199   2 RKKILMLMACGCL-----LAGSAHAQWVVTDPTNLAQSIINTtkeiVQTSKTVKNTldnfkeVEKLYNESKKYYD----- 71
Cdd:COG5314     7 RRRLAAALLAAALalsplAPQPAHAQIIVFDPSNYAQNVLTA----ARALEQINNQ------ITQLQNQAQMLINqarnl 76

                          90       100
                  ....*....|....*....|....*...
gi 2028841199  72 -------------ALKKVNNLVRDAQRV 86
Cdd:COG5314    77 aslpfsslgqlqqNLQRTQQLLGQAQGI 104
PRK13874 PRK13874
conjugal transfer protein TrbJ; Provisional
 2-35 5.09e-05

conjugal transfer protein TrbJ; Provisional


Pssm-ID: 184358  Cd Length: 230  Bit Score: 42.59  E-value: 5.09e-05
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2028841199   2 RKKILMLMACGCL-----LAGSAHAQWVVTDPTNLAQSI 35
Cdd:PRK13874    1 RKRLLALALAAALalsplLAPPAHAQWIVYDPTNYAQNV 39
 
Name Accession Description Interval E-value
DUF4141 pfam13605
Domain of unknown function (DUF4141); Based on Bacteroides thetaiotaomicron gene BT_4772, a ...
 4-56 1.77e-30

Domain of unknown function (DUF4141); Based on Bacteroides thetaiotaomicron gene BT_4772, a putative uncharacterized protein. As seen in gene expression experiments (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE2231), it appears to be upregulated in the presence of host or vs when in culture.


Pssm-ID: 433344 [Multi-domain]  Cd Length: 53  Bit Score: 106.25  E-value: 1.77e-30
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2028841199   4 KILMLMACGCLLAGSAHAQWVVTDPTNLAQSIINTTKEIVQTSKTVKNTLDNF 56
Cdd:pfam13605   1 KILLLCLVLLLFTGKAHAQWVVTDPGNLAQSIINTSKEIVQTSKTASNTLKNF 53
COG5314 COG5314
Conjugal transfer/entry exclusion protein [Mobilome: prophages, transposons];
2-86 3.40e-05

Conjugal transfer/entry exclusion protein [Mobilome: prophages, transposons];


Pssm-ID: 444109  Cd Length: 249  Bit Score: 43.36  E-value: 3.40e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2028841199   2 RKKILMLMACGCL-----LAGSAHAQWVVTDPTNLAQSIINTtkeiVQTSKTVKNTldnfkeVEKLYNESKKYYD----- 71
Cdd:COG5314     7 RRRLAAALLAAALalsplAPQPAHAQIIVFDPSNYAQNVLTA----ARALEQINNQ------ITQLQNQAQMLINqarnl 76

                          90       100
                  ....*....|....*....|....*...
gi 2028841199  72 -------------ALKKVNNLVRDAQRV 86
Cdd:COG5314    77 aslpfsslgqlqqNLQRTQQLLGQAQGI 104
PRK13874 PRK13874
conjugal transfer protein TrbJ; Provisional
 2-35 5.09e-05

conjugal transfer protein TrbJ; Provisional


Pssm-ID: 184358  Cd Length: 230  Bit Score: 42.59  E-value: 5.09e-05
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2028841199   2 RKKILMLMACGCL-----LAGSAHAQWVVTDPTNLAQSI 35
Cdd:PRK13874    1 RKRLLALALAAALalsplLAPPAHAQWIVYDPTNYAQNV 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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