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Conserved domains on  [gi|2026799711|gb|QTX08648|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Picea spinulosa]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 super family cl31811
NADH dehydrogenase subunit 5; Provisional
 1-65 5.73e-23

NADH dehydrogenase subunit 5; Provisional


The actual alignment was detected with superfamily member MTH00210:

Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 89.68  E-value: 5.73e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2026799711   1 FDSPTVVMPIVVTFVSSLVHPHPISYMSEDPHSPRFMCHSSIPTFFTPMSVTGDNFIQLFPGWEG 65
Cdd:MTH00210   78 FDSLTSTMLIVITSVSALVHIYSTGYMSGDPHIPRFMSYLSLFTFLMIVLVTSDNYVQLFIGWEG 142
 
Name Accession Description Interval E-value
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 1-65 5.73e-23

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 89.68  E-value: 5.73e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2026799711   1 FDSPTVVMPIVVTFVSSLVHPHPISYMSEDPHSPRFMCHSSIPTFFTPMSVTGDNFIQLFPGWEG 65
Cdd:MTH00210   78 FDSLTSTMLIVITSVSALVHIYSTGYMSGDPHIPRFMSYLSLFTFLMIVLVTSDNYVQLFIGWEG 142
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 2-65 1.40e-16

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 71.54  E-value: 1.40e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2026799711   2 DSPTVVMPIVVTFVSSLVHPHPISYMSEDPHSPRFMCHSSIPTFFTPMSVTGDNFIQLFPGWEG 65
Cdd:TIGR01974  82 DGLSLTMLVVVTGVGSLVHIYSIGYMAHDEGYSRFFAYLNLFTFSMLMLVLADNFLQLFFGWEG 145
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 2-65 6.33e-12

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 58.24  E-value: 6.33e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2026799711   2 DSPTVVMPIVVTFVSSLVHPHPISYMSEDPHSPRFMCHSSIPTFFTPMSVTGDNFIQLFPGWEG 65
Cdd:COG1009    79 DGLSLLMLLLVTGVGLLVHIYSIGYMSGDPGLARFFAYLLLFMAAMLGLVLSDNLLLLFVFWEL 142
Proton_antipo_N pfam00662
NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; This sub-family represents an ...
 1-37 1.96e-08

NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; This sub-family represents an amino terminal extension of pfam00361. Only NADH-Ubiquinone chain 5 and eubacterial chain L are in this family. This sub-family is part of complex I which catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane.


Pssm-ID: 459895 [Multi-domain]  Cd Length: 51  Bit Score: 45.11  E-value: 1.96e-08
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 2026799711  1 FDSPTVVMPIVVTFVSSLVHPHPISYMSEDPHSPRFM 37
Cdd:pfam00662 15 IDPLSALMLLVVTGVSLLVHIYSIGYMHHDPGYARFF 51
 
Name Accession Description Interval E-value
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 1-65 5.73e-23

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 89.68  E-value: 5.73e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2026799711   1 FDSPTVVMPIVVTFVSSLVHPHPISYMSEDPHSPRFMCHSSIPTFFTPMSVTGDNFIQLFPGWEG 65
Cdd:MTH00210   78 FDSLTSTMLIVITSVSALVHIYSTGYMSGDPHIPRFMSYLSLFTFLMIVLVTSDNYVQLFIGWEG 142
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 1-65 1.39e-21

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 85.51  E-value: 1.39e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2026799711   1 FDSPTVVMPIVVTFVSSLVHPHPISYMSEDPHSPRFMCHSSIPTFFTPMSVTGDNFIQLFPGWEG 65
Cdd:MTH00020   78 FDGLVAIMLLVVTTVSTLVHIFSTAYMRGDPHIPRFMSYLSLFTFLMVVLVTSDNYLQLFIGWEG 142
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 1-65 1.63e-18

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 76.92  E-value: 1.63e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2026799711   1 FDSPTVVMPIVVTFVSSLVHPHPISYMSEDPHSPRFMCHSSIPTFFTPMSVTGDNFIQLFPGWEG 65
Cdd:MTH00032   78 YDTLSVTMLLVISSISTLVHIYSTSYMSDDPHVPRFLCYLSLFTFLMMVLVTSDNYLQLFIGWEG 142
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 1-65 1.93e-18

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 76.74  E-value: 1.93e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2026799711   1 FDSPTVVMPIVVTFVSSLVHPHPISYMSEDPHSPRFMCHSSIPTFFTPMSVTGDNFIQLFPGWEG 65
Cdd:PRK06590   82 VDGLSATMLVVVTGVSFLVHIYSIGYMAHDEGYRRFFAYLNLFTFSMLMLVLSDNLLQLFFGWEG 146
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 2-65 1.40e-16

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 71.54  E-value: 1.40e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2026799711   2 DSPTVVMPIVVTFVSSLVHPHPISYMSEDPHSPRFMCHSSIPTFFTPMSVTGDNFIQLFPGWEG 65
Cdd:TIGR01974  82 DGLSLTMLVVVTGVGSLVHIYSIGYMAHDEGYSRFFAYLNLFTFSMLMLVLADNFLQLFFGWEG 145
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 2-65 6.33e-12

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 58.24  E-value: 6.33e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2026799711   2 DSPTVVMPIVVTFVSSLVHPHPISYMSEDPHSPRFMCHSSIPTFFTPMSVTGDNFIQLFPGWEG 65
Cdd:COG1009    79 DGLSLLMLLLVTGVGLLVHIYSIGYMSGDPGLARFFAYLLLFMAAMLGLVLSDNLLLLFVFWEL 142
Proton_antipo_N pfam00662
NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; This sub-family represents an ...
 1-37 1.96e-08

NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; This sub-family represents an amino terminal extension of pfam00361. Only NADH-Ubiquinone chain 5 and eubacterial chain L are in this family. This sub-family is part of complex I which catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane.


Pssm-ID: 459895 [Multi-domain]  Cd Length: 51  Bit Score: 45.11  E-value: 1.96e-08
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 2026799711  1 FDSPTVVMPIVVTFVSSLVHPHPISYMSEDPHSPRFM 37
Cdd:pfam00662 15 IDPLSALMLLVVTGVSLLVHIYSIGYMHHDPGYARFF 51
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-65 2.39e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 36.85  E-value: 2.39e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2026799711   1 FDSPTVVMPIVVTFVSSLVHPHPISYMSEDPHSPRFMCHSSIPTFFTPMSVTGDNFIQLFPGWEG 65
Cdd:MTH00211   77 FDFYSIFFTSVALYVTWSILEFSLWYMSSEPNINRFFKYLLLFLIFMLILVSANNLFQLFIGWEG 141
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 24-65 6.53e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 35.65  E-value: 6.53e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 2026799711  24 ISYMSEDPHSPRFMCHssIPTFFTPMS--VTGDNFIQLFPGWEG 65
Cdd:MTH00066  103 IWYMHSDPKINRFFKY--LLIFLIAMMilVTANNLFQLFIGWEG 144
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 26-65 9.99e-04

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 35.14  E-value: 9.99e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2026799711  26 YMSEDPHSPRFMCHssIPTFFTPMS--VTGDNFIQLFPGWEG 65
Cdd:MTH00004  107 YMASDPHITKFFKY--LLIFLIAMLilITANNMFQLFIGWEG 146
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 26-65 2.67e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 33.67  E-value: 2.67e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2026799711  26 YMSEDPHSPRFMCHssIPTFFTPMS--VTGDNFIQLFPGWEG 65
Cdd:MTH00108  107 YMHSDPNINRFFKY--LLLFLITMLilVTANNLFQLFIGWEG 146
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 26-65 4.62e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 33.27  E-value: 4.62e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2026799711  26 YMSEDPHSPRFMCHssIPTFFTPMS--VTGDNFIQLFPGWEG 65
Cdd:MTH00137  111 YMHADPNMNRFFKY--LLIFLIAMIilVTANNMFQLFIGWEG 150
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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