conjugal transfer protein (plasmid) [Escherichia coli H20]
List of domain hits
Name | Accession | Description | Interval | E-value | |||
TrbM super family | cl21715 | TrbM; This family contains the bacterial protein TrbM (approximately 180 residues long). In ... |
1-85 | 1.46e-07 | |||
TrbM; This family contains the bacterial protein TrbM (approximately 180 residues long). In Comamonas testosteroni T-2, TrbM is derived from the IncP1beta plasmid pTSA, which encodes the widespread genes for p-toluenesulfonate (TSA) degradation. This family also includes MPFK and its functional homolog kikA, which are required for efficient conjugative transfer in IncP-9 plasmids. The actual alignment was detected with superfamily member PRK13893: Pssm-ID: 451366 Cd Length: 193 Bit Score: 47.08 E-value: 1.46e-07
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Name | Accession | Description | Interval | E-value | |||
PRK13893 | PRK13893 | conjugal transfer protein TrbM; Provisional |
1-85 | 1.46e-07 | |||
conjugal transfer protein TrbM; Provisional Pssm-ID: 237548 Cd Length: 193 Bit Score: 47.08 E-value: 1.46e-07
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TrbM | pfam07424 | TrbM; This family contains the bacterial protein TrbM (approximately 180 residues long). In ... |
28-85 | 1.03e-06 | |||
TrbM; This family contains the bacterial protein TrbM (approximately 180 residues long). In Comamonas testosteroni T-2, TrbM is derived from the IncP1beta plasmid pTSA, which encodes the widespread genes for p-toluenesulfonate (TSA) degradation. This family also includes MPFK and its functional homolog kikA, which are required for efficient conjugative transfer in IncP-9 plasmids. Pssm-ID: 429457 Cd Length: 153 Bit Score: 44.02 E-value: 1.03e-06
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Name | Accession | Description | Interval | E-value | |||
PRK13893 | PRK13893 | conjugal transfer protein TrbM; Provisional |
1-85 | 1.46e-07 | |||
conjugal transfer protein TrbM; Provisional Pssm-ID: 237548 Cd Length: 193 Bit Score: 47.08 E-value: 1.46e-07
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TrbM | pfam07424 | TrbM; This family contains the bacterial protein TrbM (approximately 180 residues long). In ... |
28-85 | 1.03e-06 | |||
TrbM; This family contains the bacterial protein TrbM (approximately 180 residues long). In Comamonas testosteroni T-2, TrbM is derived from the IncP1beta plasmid pTSA, which encodes the widespread genes for p-toluenesulfonate (TSA) degradation. This family also includes MPFK and its functional homolog kikA, which are required for efficient conjugative transfer in IncP-9 plasmids. Pssm-ID: 429457 Cd Length: 153 Bit Score: 44.02 E-value: 1.03e-06
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Blast search parameters | ||||
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