|
Name |
Accession |
Description |
Interval |
E-value |
| HisM |
COG0765 |
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ... |
7-211 |
8.40e-79 |
|
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440528 [Multi-domain] Cd Length: 218 Bit Score: 235.35 E-value: 8.40e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998817473 7 WDIVRNLLLAARWTLLLSLTAFFGGTLVALPLVLMRLSKRRWAMRFVRVYAELFQGTPLLMQLFLAFFGLALFGVDVSPW 86
Cdd:COG0765 9 LDYLPLLLEGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQLFFIYFGLPLLGIDLSPF 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998817473 87 TAAALALTLFTSAFLVDIWSGSIAALPKGQWEAARCLGLSFTQTLMRVITPQAVRIAIAPTVGFSVQVIKGTALASIIGF 166
Cdd:COG0765 89 VAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILPPLGNEFISLLKDTSLVSVIGV 168
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1998817473 167 VELTKAGTMLNNVTYQPFKVFGLVALGYFLMCYPLSRYSHYLEKK 211
Cdd:COG0765 169 PELTRAAQQIASRTFRPFEVYLVAALIYLVLTLPLSLLARRLERR 213
|
|
| PRK15100 |
PRK15100 |
cystine ABC transporter permease; |
13-211 |
1.06e-40 |
|
cystine ABC transporter permease;
Pssm-ID: 185055 [Multi-domain] Cd Length: 220 Bit Score: 138.34 E-value: 1.06e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998817473 13 LLLAARWTLLLSLTAFFGGTLVALPLVLMRLSkRRWAMRFV-RVYAELFQGTPLLMQLFLAFFGLALFGVDVSPWTAAAL 91
Cdd:PRK15100 15 LLKGAGYTLQLSIGGMFFGLLLGFILALMRLS-PIWPVRWLaRFYVSIFRGTPLIAQLFMIYYGLPQFGIELDPIPAAMI 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998817473 92 ALTLFTSAFLVDIWSGSIAALPKGQWEAARCLGLSFTQTLMRVITPQAVRIAIAPTVGFSVQVIKGTALASIIGFVELTK 171
Cdd:PRK15100 94 GLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTRWQTLRRAILPQAARTALPPLSNSFISLVKDTSLAATIQVPELFR 173
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1998817473 172 AGTMLNNVTYQPFKVFGLVALGYFLMCYPLSRYSHYLEKK 211
Cdd:PRK15100 174 QAQLITSRTLEVFTMYLAASLIYWIMATVLSALQNRFENQ 213
|
|
| HEQRo_perm_3TM |
TIGR01726 |
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This ... |
9-107 |
1.18e-28 |
|
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This model represents one of several classes of multiple membrane spanning regions found immediately N-terminal to the domain described by pfam00528, binding-protein-dependent transport systems inner membrane component. The region covered by this model generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 130787 [Multi-domain] Cd Length: 99 Bit Score: 103.38 E-value: 1.18e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998817473 9 IVRNLLLAARWTLLLSLTAFFGGTLVALPLVLMRLSKRRWAMRFVRVYAELFQGTPLLMQLFLAFFGLALFGVDVSPWTA 88
Cdd:TIGR01726 1 NLPFLLKGLLLTLLLSVLSILLGLVLGLLLALLRLSGNRPLRWIATVYVELFRGTPLLVQLFFIYFGLPLIGIRLSPLTA 80
|
90
....*....|....*....
gi 1998817473 89 AALALTLFTSAFLVDIWSG 107
Cdd:TIGR01726 81 AVIALTLFYGAYLAEIFRG 99
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
17-197 |
9.55e-16 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 72.31 E-value: 9.55e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998817473 17 ARWTLLLSLTAFFGGTLVALPLVLMRLSKRRWAMRFVRVYAELFQGTPLLMQLFLAFFGLALFG---VDVSPWTAAALAL 93
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLgwgILPGLGLPALILA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998817473 94 TLFTSAFLVDIWSGSIAALPKGQWEAARCLGLSFTQTLMRVITPQAVRIAIAPTVGFSVQVIKGTALASIIGFVELTKAG 173
Cdd:cd06261 81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160
|
170 180
....*....|....*....|....
gi 1998817473 174 TMLNNVTYQPFKVFGLVALGYFLM 197
Cdd:cd06261 161 TGLLLIFAILFPGDLGVAAAVALI 184
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
39-165 |
2.27e-07 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 49.22 E-value: 2.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998817473 39 VLMRLSKRRWAMRFVRVYAELFQGTPLLMQLFLaFFGLALFGVDVSPWTAAALALTLFTSAFLVDIWSGSIAALPKGQWE 118
Cdd:pfam00528 6 IIAALRRGRRLDRLLRPLIDLLQALPSFVLAIL-LVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVE 84
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1998817473 119 AARCLGLSFTQTLMRVITPQAVRIAIAPTVGFSVQVIKGTALASIIG 165
Cdd:pfam00528 85 AARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLG 131
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| HisM |
COG0765 |
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ... |
7-211 |
8.40e-79 |
|
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440528 [Multi-domain] Cd Length: 218 Bit Score: 235.35 E-value: 8.40e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998817473 7 WDIVRNLLLAARWTLLLSLTAFFGGTLVALPLVLMRLSKRRWAMRFVRVYAELFQGTPLLMQLFLAFFGLALFGVDVSPW 86
Cdd:COG0765 9 LDYLPLLLEGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQLFFIYFGLPLLGIDLSPF 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998817473 87 TAAALALTLFTSAFLVDIWSGSIAALPKGQWEAARCLGLSFTQTLMRVITPQAVRIAIAPTVGFSVQVIKGTALASIIGF 166
Cdd:COG0765 89 VAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILPPLGNEFISLLKDTSLVSVIGV 168
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1998817473 167 VELTKAGTMLNNVTYQPFKVFGLVALGYFLMCYPLSRYSHYLEKK 211
Cdd:COG0765 169 PELTRAAQQIASRTFRPFEVYLVAALIYLVLTLPLSLLARRLERR 213
|
|
| ArtM |
COG4160 |
ABC-type arginine/histidine transport system, permease component [Amino acid transport and ... |
7-211 |
1.44e-45 |
|
ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443325 [Multi-domain] Cd Length: 229 Bit Score: 151.02 E-value: 1.44e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998817473 7 WDIVRNLLLAARWTLLLSLTAFFGGTLVALPLVLMRLSKRRWAMRFVRVYAELFQGTPLLMQLFLAFFGLALFGV--DV- 83
Cdd:COG4160 7 FEYLPLLLSGLPLTLQLLALSLLLGFLLAVPLALARASGNRLLRWPARGYIYVFRGTPLLVQLFLIYYGLGQFEWvrESw 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998817473 84 ------SPWTAAALALTLFTSAFLVDIWSGSIAALPKGQWEAARCLGLSFTQTLMRVITPQAVRIAIAPTVGFSVQVIKG 157
Cdd:COG4160 87 lwpllrDPWFCALLALTLNTAAYTAEIFRGAIRAVPKGEIEAARALGMSRWQTFRRIILPSALRRALPAYSNEVILMLKA 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1998817473 158 TALASIIGFVELTKAGTMLNNVTYQPFKVFGLVALGYFLMCYPLSRYSHYLEKK 211
Cdd:COG4160 167 TALASTITVMDLTGVARRIYSRTYDPFEPFLIAALIYLVITFLLTRLFRLLERR 220
|
|
| PRK15100 |
PRK15100 |
cystine ABC transporter permease; |
13-211 |
1.06e-40 |
|
cystine ABC transporter permease;
Pssm-ID: 185055 [Multi-domain] Cd Length: 220 Bit Score: 138.34 E-value: 1.06e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998817473 13 LLLAARWTLLLSLTAFFGGTLVALPLVLMRLSkRRWAMRFV-RVYAELFQGTPLLMQLFLAFFGLALFGVDVSPWTAAAL 91
Cdd:PRK15100 15 LLKGAGYTLQLSIGGMFFGLLLGFILALMRLS-PIWPVRWLaRFYVSIFRGTPLIAQLFMIYYGLPQFGIELDPIPAAMI 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998817473 92 ALTLFTSAFLVDIWSGSIAALPKGQWEAARCLGLSFTQTLMRVITPQAVRIAIAPTVGFSVQVIKGTALASIIGFVELTK 171
Cdd:PRK15100 94 GLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTRWQTLRRAILPQAARTALPPLSNSFISLVKDTSLAATIQVPELFR 173
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1998817473 172 AGTMLNNVTYQPFKVFGLVALGYFLMCYPLSRYSHYLEKK 211
Cdd:PRK15100 174 QAQLITSRTLEVFTMYLAASLIYWIMATVLSALQNRFENQ 213
|
|
| HEQRo_perm_3TM |
TIGR01726 |
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This ... |
9-107 |
1.18e-28 |
|
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This model represents one of several classes of multiple membrane spanning regions found immediately N-terminal to the domain described by pfam00528, binding-protein-dependent transport systems inner membrane component. The region covered by this model generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 130787 [Multi-domain] Cd Length: 99 Bit Score: 103.38 E-value: 1.18e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998817473 9 IVRNLLLAARWTLLLSLTAFFGGTLVALPLVLMRLSKRRWAMRFVRVYAELFQGTPLLMQLFLAFFGLALFGVDVSPWTA 88
Cdd:TIGR01726 1 NLPFLLKGLLLTLLLSVLSILLGLVLGLLLALLRLSGNRPLRWIATVYVELFRGTPLLVQLFFIYFGLPLIGIRLSPLTA 80
|
90
....*....|....*....
gi 1998817473 89 AALALTLFTSAFLVDIWSG 107
Cdd:TIGR01726 81 AVIALTLFYGAYLAEIFRG 99
|
|
| ectoine_ehuD |
TIGR03003 |
ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are ... |
6-211 |
4.11e-26 |
|
ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons.
Pssm-ID: 132048 [Multi-domain] Cd Length: 212 Bit Score: 100.31 E-value: 4.11e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998817473 6 DWDIVRNLL----LAARWTLLLSLTAFFGGTLVALPLVLMRLSKRRWAMRFVRVYAELFQGTPLLMQLFLAFFGLALFGV 81
Cdd:TIGR03003 2 DWEFVRQILptliEGLKITILATALGFAIAAVLGLVFAILRRSAPTPISWPTSFVVEFIRGTPLLVQLYFLYYVLPDIGI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998817473 82 DVSPWTAAALALTLFTSAFLVDIWSGSIAALPKGQWEAARCLGLSFTQTLMRVITPQAVRIAIAPTVGFSVQVIKGTALA 161
Cdd:TIGR03003 82 RLPALVAGVLGLGLHYATYAAEVYRAGIEAVPRGQWEAATALNLTARQTYRHIILPQAIPPIIPALGNYLVAMFKETPVL 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1998817473 162 SIIGFVELTKAGTMLNNVTYQPFKVFGLVALGYFLMCYPLSRYSHYLEKK 211
Cdd:TIGR03003 162 SAITVLELMNQAKSIGNSTFRYLEPMTLVGVFFLILSIISVFFLRRLEAR 211
|
|
| glnP |
PRK09494 |
glutamine ABC transporter permease protein; Reviewed |
7-213 |
6.73e-25 |
|
glutamine ABC transporter permease protein; Reviewed
Pssm-ID: 181907 [Multi-domain] Cd Length: 219 Bit Score: 97.05 E-value: 6.73e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998817473 7 WDIVRNLLLAARWTLLLSLTAFFGGTLVALPLVLMRLSKRRWAMRFVRVYAELFQGTPLLMQLFLAFFGL--ALFGVDVS 84
Cdd:PRK09494 9 WPAIPLLLEGAKMTLWISVLGLAGGLVIGLLAGFARAYGGWIANHIALVFIELIRGTPIVVQVMFIYFALpmAFNDLRID 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998817473 85 PWTAAALALTLFTSAFLVDIWSGSIAALPKGQWEAARCLGLSFTQTLMRVITPQAVRIAIAPTVGFSVQVIKGTALASII 164
Cdd:PRK09494 89 PFTAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRYVIGPLALRRMLPPLGNQWIISIKDTSLFIVI 168
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1998817473 165 GFVELTKAGTMLNNVTYQPFKVFGLVALGYFLMCYPLSRYSHYLEKKCH 213
Cdd:PRK09494 169 GVAELTRQGQEIIAGNFRALEIWSAVAVIYLIITLVLSFILRRLERRMK 217
|
|
| artM |
PRK11122 |
arginine ABC transporter permease ArtM; |
20-211 |
4.82e-24 |
|
arginine ABC transporter permease ArtM;
Pssm-ID: 182978 [Multi-domain] Cd Length: 222 Bit Score: 95.03 E-value: 4.82e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998817473 20 TLLLSLTAFFGGTLVALPLVLMRLSKRRWAMRFVRVYAELFQGTPLLMQLFLAFFGLALFGVDVS----------PWTAA 89
Cdd:PRK11122 15 SLTLTVASLLVALVLALIFTIILTLKTPVLVWLVRGYITLFTGTPLLVQIFLIYYGPGQFPWLQEypwlwhllsqPWLCA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998817473 90 ALALTLFTSAFLVDIWSGSIAALPKGQWEAARCLGLSFTQTLmRVITPQAVRIAIAPTVGFSVQVIKGTALASIIGFVEL 169
Cdd:PRK11122 95 MLALALNSAAYSTQLFYGAVRAIPEGQWQSCAALGMSKKQTL-RILLPYAFKRALSSYSNEVVLVFKSTSLAYTITLMDV 173
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1998817473 170 TKAGTMLNNVTYQpFKVFGLVALGYFLMCYPLSRYSHYLEKK 211
Cdd:PRK11122 174 MGYSQLLYGRTYD-VMVFGAAGIIYLVVNGLLTLLMRLIERK 214
|
|
| PRK15069 |
PRK15069 |
histidine ABC transporter permease HisM; |
19-201 |
4.81e-23 |
|
histidine ABC transporter permease HisM;
Pssm-ID: 185029 [Multi-domain] Cd Length: 234 Bit Score: 92.81 E-value: 4.81e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998817473 19 WTLLLSLTAffgGTLVALPLVLMRLSKRRWAMRFVRVYAELFQGTPLLMQLFLAFFGL-ALFGVDVSPWTAA-------- 89
Cdd:PRK15069 28 WLLVASVVI---GFVLAVPLAIARVSSNKWIRFPVWLYTYVFRGTPLYVQLLVFYTGMySLEIVRGTDLLDAffrsglnc 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998817473 90 -ALALTLFTSAFLVDIWSGSIAALPKGQWEAARCLGLSFTQTLMRVITPQAVRIAIAptvGFSVQVI---KGTALASIIG 165
Cdd:PRK15069 105 tILAFTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGMSTFKLYRRIILPSALRRALP---AYSNEVIlmlHATTLAFTAT 181
|
170 180 190
....*....|....*....|....*....|....*.
gi 1998817473 166 FVELTKAGTMLNNVTYQPFKVFGLVALGYFLMCYPL 201
Cdd:PRK15069 182 VPDILKIARDINSATYQPFQAFGIAAVLYLIISFVL 217
|
|
| PRK11123 |
PRK11123 |
arginine ABC transporter permease ArtQ; |
13-194 |
1.65e-18 |
|
arginine ABC transporter permease ArtQ;
Pssm-ID: 182979 [Multi-domain] Cd Length: 238 Bit Score: 80.88 E-value: 1.65e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998817473 13 LLLAARWTLLLSLTAFFGGTLVALPLVLMRLSKRRWAMRFVRVYAELFQGTPLLMQLFLAFFG----------------- 75
Cdd:PRK11123 7 LASAAGMTVGLAVCALIVGLALAMLFAVWESAKWRPVAWPGTALVTLLRGLPEILVVLFIYFGssqllltlsdgftlnlg 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998817473 76 -------LALFGVDVSPWTAAALALTLFTSAFLVDIWSGSIAALPKGQWEAARCLGLSFTQTLMRVITPQAVRIAIAptv 148
Cdd:PRK11123 87 fvqipvqMDIENFEVSPFLCGVIALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWRHALP--- 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1998817473 149 GFSVQ---VIKGTALASIIGFVELTKAGTMLNNVTYQPFKVFGLVALGY 194
Cdd:PRK11123 164 GLGNQwlvLLKDTALVSLISVNDLMLQTKSIATRTQEPFTWYIIAAAIY 212
|
|
| BatB |
COG4597 |
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ... |
80-194 |
2.59e-18 |
|
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443651 [Multi-domain] Cd Length: 397 Bit Score: 82.12 E-value: 2.59e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998817473 80 GVDVSP-WTAAALALTLFTSAFLVDIWSGSIAALPKGQWEAARCLGLSFTQTLMRVITPQAVRIAIAPTVGFSVQVIKGT 158
Cdd:COG4597 258 GLTLSPeFVALLLALSLYTAAFIAEIVRAGIQAVSKGQTEAARALGLRPGQTLRLVVLPQALRVIIPPLTSQYLNLTKNS 337
|
90 100 110
....*....|....*....|....*....|....*...
gi 1998817473 159 ALASIIGFVEL--TKAGTMLNNvTYQPFKVFGLVALGY 194
Cdd:COG4597 338 SLAVAIGYPDLvsVFAGTTLNQ-TGQAIEIIAITMAVY 374
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
17-197 |
9.55e-16 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 72.31 E-value: 9.55e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998817473 17 ARWTLLLSLTAFFGGTLVALPLVLMRLSKRRWAMRFVRVYAELFQGTPLLMQLFLAFFGLALFG---VDVSPWTAAALAL 93
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLgwgILPGLGLPALILA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998817473 94 TLFTSAFLVDIWSGSIAALPKGQWEAARCLGLSFTQTLMRVITPQAVRIAIAPTVGFSVQVIKGTALASIIGFVELTKAG 173
Cdd:cd06261 81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160
|
170 180
....*....|....*....|....
gi 1998817473 174 TMLNNVTYQPFKVFGLVALGYFLM 197
Cdd:cd06261 161 TGLLLIFAILFPGDLGVAAAVALI 184
|
|
| PRK15135 |
PRK15135 |
histidine ABC transporter permease HisQ; |
13-202 |
1.53e-15 |
|
histidine ABC transporter permease HisQ;
Pssm-ID: 185089 [Multi-domain] Cd Length: 228 Bit Score: 72.52 E-value: 1.53e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998817473 13 LLLAARWTLLLSLTAFFGGTLVALPLVLMRLSKRRWAMRFVRVYAELFQGTPLLMQLFLAFFGL-----------ALFGV 81
Cdd:PRK15135 9 ILQGALVTLELALSSVVLAVIIGLIGAGGKLSQNRLLGLIFEGYTTLIRGVPDLVLMLLIFYGLqialnsvtealGVGQI 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998817473 82 DVSPWTAAALALTLFTSAFLVDIWSGSIAALPKGQWEAARCLGLSFTQTLMRVITPQAVRIAIaPTVGFSVQVI-KGTAL 160
Cdd:PRK15135 89 DIDPMVAGIITLGFIYGAYFTETFRGAFMAVPKGHIEAATAFGFTRGQVFRRIMFPAMMRYAL-PGIGNNWQVIlKATAL 167
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1998817473 161 ASIIGFVELTKAGTMLNNVTYQPFkVFGLVALGYFLMCYPLS 202
Cdd:PRK15135 168 VSLLGLEDVVKATQLAGKSTWEPF-YFAIVCGVIYLVFTTVS 208
|
|
| PRK15107 |
PRK15107 |
glutamate/aspartate ABC transporter permease GltK; |
20-211 |
6.66e-09 |
|
glutamate/aspartate ABC transporter permease GltK;
Pssm-ID: 185062 [Multi-domain] Cd Length: 224 Bit Score: 54.07 E-value: 6.66e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998817473 20 TLLLSLTAFFGGTLVALPLVLMRLSKRRWAMRFVRVYAELFQGTPLLMQL---FLAFFGLALFGVDVSPWT-----AAAL 91
Cdd:PRK15107 23 TLKITVTAVVIGILWGTILAVMRLSSFKPVAWFAKAYVNVFRSIPLVMVLlwfYLIVPGFLQNVLGLSPKTdirliSAMV 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998817473 92 ALTLFTSAFLVDIWSGSIAALPKGQWEAARCLGLSFTQTLMRVITPQAVRIAIAPTVGFSVQVIKGTALASIIGFVELTK 171
Cdd:PRK15107 103 AFSMFEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLLLTQGIVLFQDTSLVYVLSLADFFR 182
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1998817473 172 AGTMLNNVTYQPFKVFGLVALGYFLMCYPLSRYSHYLEKK 211
Cdd:PRK15107 183 TASTIGERDGTQVEMILFAGFVYFVISLSASLLVSYLKKR 222
|
|
| PhnE |
COG3639 |
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ... |
6-139 |
1.69e-08 |
|
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 442856 [Multi-domain] Cd Length: 244 Bit Score: 53.16 E-value: 1.69e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998817473 6 DWDIVRNLLLAARWTLLLSLTAFFGGTLVALPLVLM---RLSKRRWAMRFVRVYAELFQGTPLLM--QLFLAFFGLALFg 80
Cdd:COG3639 42 DWSYLPDLLSALLETLAIALLGTLLGAVLALPLAFLaarNLAPNPWVRLLARRLLNVLRAIPELVwaLIFVAAVGLGPF- 120
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1998817473 81 vdvspwtAAALALTLFTSAFLVDIWSGSIAALPKGQWEAARCLGLSFTQTLMRVITPQA 139
Cdd:COG3639 121 -------AGVLALAIHTIGFLGKLFAEAIEEIDPGPVEALRATGASRLQVIRYGVLPQV 172
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
39-165 |
2.27e-07 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 49.22 E-value: 2.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998817473 39 VLMRLSKRRWAMRFVRVYAELFQGTPLLMQLFLaFFGLALFGVDVSPWTAAALALTLFTSAFLVDIWSGSIAALPKGQWE 118
Cdd:pfam00528 6 IIAALRRGRRLDRLLRPLIDLLQALPSFVLAIL-LVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVE 84
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1998817473 119 AARCLGLSFTQTLMRVITPQAVRIAIAPTVGFSVQVIKGTALASIIG 165
Cdd:pfam00528 85 AARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLG 131
|
|
| TauC |
COG0600 |
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ... |
3-145 |
4.14e-05 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440365 [Multi-domain] Cd Length: 254 Bit Score: 43.21 E-value: 4.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998817473 3 TFTDWDIVRNLLLAARWTLLLSLTAFFGGTLVALPL-VLMRLSkrRWAMRFVRVYAELFQGTPL--LMQLFLAFFGLALf 79
Cdd:COG0600 49 ALVELLASGELWEHLLASLLRVLLGFALAALLGVPLgLLLGLS--RLLRRLLDPLLVFLRPIPPlaLAPLLILWFGIGE- 125
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1998817473 80 gvdvspwtAAALALTLFTSAF--LVDIWSGsIAALPKGQWEAARCLGLSFTQTLMRVITPQA-------VRIAIA 145
Cdd:COG0600 126 --------ASKIFVIFLGAFFpiLLNTAAG-VRSVDPELLELARSLGASRWQILRKVVLPAAlpyiftgLRIALG 191
|
|
| PhnE |
TIGR01097 |
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ... |
6-139 |
7.17e-05 |
|
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]
Pssm-ID: 273441 [Multi-domain] Cd Length: 250 Bit Score: 42.53 E-value: 7.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998817473 6 DWDIVRNLLLAARWTLLLSLTAFFGGTLVALPLVLM---RLSKRRWAMRFVRVYAELFQGTPLLM--QLFLAFFGLALFg 80
Cdd:TIGR01097 49 DWSYLPRILKALLETLAMAILGTVLAAVLAVPLALLaarNITPSPWLYGLARLLLNFLRAIPELVwaLIFVAAVGLGPF- 127
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1998817473 81 vdvspwtAAALALTLFTSAFLVDIWSGSIAALPKGQWEAARCLGLSFTQTLMRVITPQA 139
Cdd:TIGR01097 128 -------AGVLALAFHTVGFLGKLFAEAIEEVDPGPVEALRATGASKLQVIRYGVLPQV 179
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
12-137 |
5.32e-04 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 40.53 E-value: 5.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998817473 12 NLLLAARWTLLLSLTAFFGGTLVALPLVLMRLSKRRWAMRFVRVYAELFQGTPL------LMQLFLAFFGLALFGvdvsP 85
Cdd:COG1178 335 SLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGivlglgLLLLFNRPLPLLLYG----T 410
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1998817473 86 WTAAALALTLFTSAFLVDIWSGSIAALPKGQWEAARCLGLSFTQTLMRVITP 137
Cdd:COG1178 411 LAILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLP 462
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
13-139 |
3.03e-03 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 38.22 E-value: 3.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1998817473 13 LLLAARWTLLLSLTAFFGGTLVALPLVLMRLSKRRWAMRFVRV----------------YAELFQGTPLLMQLFLAFFGL 76
Cdd:COG1178 52 LWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWllllplalppyvvalaWIALFGPNGLLNTLLRALFGL 131
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1998817473 77 ALFgvDVSPWTAAALALTLFTSAFLVDIWSGSIAALPKGQWEAARCLGLSFTQTLMRVITPQA 139
Cdd:COG1178 132 EPP--DIYGLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLL 192
|
|
| CysU |
COG0555 |
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ... |
76-141 |
5.08e-03 |
|
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440321 [Multi-domain] Cd Length: 268 Bit Score: 37.04 E-value: 5.08e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1998817473 76 LALFGVDVS-PWTAAALALTLFTSAFLVDIWSGSIAALPKGQWEAARCLGLSFTQTLMRVITPQAVR 141
Cdd:COG0555 125 LAPLGIKVAfTPLGIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLP 191
|
|
| |
