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Conserved domains on  [gi|1938539854|gb|QPJ79752|]
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NdhJ (chloroplast) [Actinidia latifolia]

Protein Classification

NAD(P)H-quinone oxidoreductase subunit J( domain architecture ID 10000005)

NAD(P)H-quinone oxidoreductase subunit J is part of the complex that shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ndhJ CHL00012
NADH dehydrogenase subunit J
 1-158 2.91e-131

NADH dehydrogenase subunit J


:

Pssm-ID: 176955 [Multi-domain]  Cd Length: 158  Bit Score: 363.25  E-value: 2.91e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938539854   1 MQGRLSAWLVKHGIIHRSLGFDYQGIETLQIKPADWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQ 80
Cdd:CHL00012    1 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIQYGVDQ 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1938539854  81 PEEVCIKVFAPRRNPRIPSVFWVWKSVNFQERESYDMLGIYYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 158
Cdd:CHL00012   81 PEEVCIKVFVPRKNPRIPSVFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 158
 
Name Accession Description Interval E-value
ndhJ CHL00012
NADH dehydrogenase subunit J
 1-158 2.91e-131

NADH dehydrogenase subunit J


Pssm-ID: 176955 [Multi-domain]  Cd Length: 158  Bit Score: 363.25  E-value: 2.91e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938539854   1 MQGRLSAWLVKHGIIHRSLGFDYQGIETLQIKPADWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQ 80
Cdd:CHL00012    1 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIQYGVDQ 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1938539854  81 PEEVCIKVFAPRRNPRIPSVFWVWKSVNFQERESYDMLGIYYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 158
Cdd:CHL00012   81 PEEVCIKVFVPRKNPRIPSVFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 158
Complex1_30kDa pfam00329
Respiratory-chain NADH dehydrogenase, 30 Kd subunit;
29-152 2.17e-46

Respiratory-chain NADH dehydrogenase, 30 Kd subunit;


Pssm-ID: 459763 [Multi-domain]  Cd Length: 121  Bit Score: 147.24  E-value: 2.17e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938539854  29 LQIKPADWHSIAVILY--VYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYgvdqPEEVCIKVFAPRrNPRIPSVFWVWKS 106
Cdd:pfam00329   1 VTVDPEDLLEVARFLRddELGFDHLSDLTGVDYPEEGRFEVVYHLLSITH----NVRVRVKVPLED-DPVVPSVTDIWPG 75

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1938539854 107 VNFQERESYDMLGIYYDNHPRLKRILMPESWIGWPLRKDYIAPNFY 152
Cdd:pfam00329  76 ANWYEREVYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDFPLTGYV 121
NuoC COG0852
NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; ...
 25-156 5.73e-45

NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440613 [Multi-domain]  Cd Length: 164  Bit Score: 144.97  E-value: 5.73e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938539854  25 GIETLQIKPADWHSIAVILY-VYGYNYLRSQCAYD-VAPGGLLASVYHLTRIEYGvdqpEEVCIKVFAPRRNPRIPSVFW 102
Cdd:COG0852    27 GELTLTVPPEDLVDVARFLRdDLGFDHLSDLTGVDyPERGDRFEVVYHLLSLTHN----RRLRLKVFVPRDDPVVPSVTD 102

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1938539854 103 VWKSVNFQERESYDMLGIYYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQD 156
Cdd:COG0852   103 VWPGANWHEREAYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDFPLEGYVEVRY 156
NuoC_fam TIGR01961
NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH ...
 47-146 3.44e-28

NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH dehydrogenase complex I in bacteria, as well as many instances of the corresponding mitochondrial subunit (NADH dehydrogenase subunit 9) and of the F420H2 dehydrogenase in Methanosarcina. Complex I contains subunits designated A-N. This C subunit often occurs as a fusion protein with the D subunit. This model excludes the NAD(P)H and plastoquinone-dependent form of chloroplasts and [Energy metabolism, Electron transport]


Pssm-ID: 273897 [Multi-domain]  Cd Length: 121  Bit Score: 100.77  E-value: 3.44e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938539854  47 GYNYLRSQCAYDVAPGGLLASVYHLtrieYGVDQPEEVCIKVFAPRrNPRIPSVFWVWKSVNFQERESYDMLGIYYDNHP 126
Cdd:TIGR01961  23 GFELLTDVSGVDYPKEKRFEVVYHL----LSIKKNRRIRLKVRLSE-DDPVPSLTSVFPTANWYERETYDMYGIVFDGHP 97

                          90       100
                  ....*....|....*....|
gi 1938539854 127 RLKRILMPESWIGWPLRKDY 146
Cdd:TIGR01961  98 DLRRILMPDDFEGHPLRKDY 117
 
Name Accession Description Interval E-value
ndhJ CHL00012
NADH dehydrogenase subunit J
 1-158 2.91e-131

NADH dehydrogenase subunit J


Pssm-ID: 176955 [Multi-domain]  Cd Length: 158  Bit Score: 363.25  E-value: 2.91e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938539854   1 MQGRLSAWLVKHGIIHRSLGFDYQGIETLQIKPADWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQ 80
Cdd:CHL00012    1 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIQYGVDQ 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1938539854  81 PEEVCIKVFAPRRNPRIPSVFWVWKSVNFQERESYDMLGIYYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 158
Cdd:CHL00012   81 PEEVCIKVFVPRKNPRIPSVFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 158
PRK12494 PRK12494
NAD(P)H-quinone oxidoreductase subunit J;
3-157 2.35e-79

NAD(P)H-quinone oxidoreductase subunit J;


Pssm-ID: 183557 [Multi-domain]  Cd Length: 172  Bit Score: 232.54  E-value: 2.35e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938539854   3 GRLSAWLVKHGIIHRSLGFDYQGIETLQIKPADWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPE 82
Cdd:PRK12494   17 GPVSQWLTENGFEHESLGPDHLGVEIIKVEPDFLLPIATALYAYGFNYLQCQGGYDEGPGKELVSFYHLIKVSDNADKPR 96

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1938539854  83 EVCIKVFAPRRNPRIPSVFWVWKSVNFQERESYDMLGIYYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDA 157
Cdd:PRK12494   97 EVRLKVFLPRDDPRVPSVYWIWKGADWQERETYDMYGINFEGHPNLKRILMPEDWVGWPLRKDYIQPDFYELQDA 171
Complex1_30kDa pfam00329
Respiratory-chain NADH dehydrogenase, 30 Kd subunit;
29-152 2.17e-46

Respiratory-chain NADH dehydrogenase, 30 Kd subunit;


Pssm-ID: 459763 [Multi-domain]  Cd Length: 121  Bit Score: 147.24  E-value: 2.17e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938539854  29 LQIKPADWHSIAVILY--VYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYgvdqPEEVCIKVFAPRrNPRIPSVFWVWKS 106
Cdd:pfam00329   1 VTVDPEDLLEVARFLRddELGFDHLSDLTGVDYPEEGRFEVVYHLLSITH----NVRVRVKVPLED-DPVVPSVTDIWPG 75

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1938539854 107 VNFQERESYDMLGIYYDNHPRLKRILMPESWIGWPLRKDYIAPNFY 152
Cdd:pfam00329  76 ANWYEREVYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDFPLTGYV 121
NuoC COG0852
NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; ...
 25-156 5.73e-45

NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440613 [Multi-domain]  Cd Length: 164  Bit Score: 144.97  E-value: 5.73e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938539854  25 GIETLQIKPADWHSIAVILY-VYGYNYLRSQCAYD-VAPGGLLASVYHLTRIEYGvdqpEEVCIKVFAPRRNPRIPSVFW 102
Cdd:COG0852    27 GELTLTVPPEDLVDVARFLRdDLGFDHLSDLTGVDyPERGDRFEVVYHLLSLTHN----RRLRLKVFVPRDDPVVPSVTD 102

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1938539854 103 VWKSVNFQERESYDMLGIYYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQD 156
Cdd:COG0852   103 VWPGANWHEREAYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDFPLEGYVEVRY 156
PRK06074 PRK06074
NADH dehydrogenase subunit C; Provisional
 28-146 1.12e-28

NADH dehydrogenase subunit C; Provisional


Pssm-ID: 235691 [Multi-domain]  Cd Length: 189  Bit Score: 104.22  E-value: 1.12e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938539854  28 TLQIKPADWHSIAVIL---YVYGYNYLRSQCAYD-VAPGGLLASVYHLtrieYGVDQPEEVCIKVFAPRrNPRIPSVFWV 103
Cdd:PRK06074   30 TLKVPAEKILEVLTFLrddPELRFEQLIDLTGVDyPERGKRFEVVYHL----LSYKHNVRLRVKVRAPE-DPVVPSVVDI 104

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1938539854 104 WKSVNFQERESYDMLGIYYDNHPRLKRILMPESWIGWPLRKDY 146
Cdd:PRK06074  105 WPSANWYEREAYDLYGIVFEGHPDLRRILTDYGFEGHPLRKDF 147
NuoC_fam TIGR01961
NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH ...
 47-146 3.44e-28

NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH dehydrogenase complex I in bacteria, as well as many instances of the corresponding mitochondrial subunit (NADH dehydrogenase subunit 9) and of the F420H2 dehydrogenase in Methanosarcina. Complex I contains subunits designated A-N. This C subunit often occurs as a fusion protein with the D subunit. This model excludes the NAD(P)H and plastoquinone-dependent form of chloroplasts and [Energy metabolism, Electron transport]


Pssm-ID: 273897 [Multi-domain]  Cd Length: 121  Bit Score: 100.77  E-value: 3.44e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938539854  47 GYNYLRSQCAYDVAPGGLLASVYHLtrieYGVDQPEEVCIKVFAPRrNPRIPSVFWVWKSVNFQERESYDMLGIYYDNHP 126
Cdd:TIGR01961  23 GFELLTDVSGVDYPKEKRFEVVYHL----LSIKKNRRIRLKVRLSE-DDPVPSLTSVFPTANWYERETYDMYGIVFDGHP 97

                          90       100
                  ....*....|....*....|
gi 1938539854 127 RLKRILMPESWIGWPLRKDY 146
Cdd:TIGR01961  98 DLRRILMPDDFEGHPLRKDY 117
PRK07785 PRK07785
NADH dehydrogenase subunit C; Provisional
 65-146 5.51e-25

NADH dehydrogenase subunit C; Provisional


Pssm-ID: 181115 [Multi-domain]  Cd Length: 235  Bit Score: 95.83  E-value: 5.51e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938539854  65 LASVYHLTRIEYGvdqpEEVCIKVFAPRRNPRIPSVFWVWKSVNFQERESYDMLGIYYDNHPRLKRILMPESWIGWPLRK 144
Cdd:PRK07785  134 LHAVYHLTSITHN----RRIRLEVAVPDADPHIPSLVSVYPTNDWHERETYDFFGIVFDGHPALTRIEMPDDWVGHPQRK 209


                  ..
gi 1938539854 145 DY 146
Cdd:PRK07785  210 DY 211
PRK07735 PRK07735
NADH-quinone oxidoreductase subunit C;
28-146 9.15e-25

NADH-quinone oxidoreductase subunit C;


Pssm-ID: 236081 [Multi-domain]  Cd Length: 430  Bit Score: 98.51  E-value: 9.15e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938539854  28 TLQIKPADWHSIAVILYVY---GYNYLRSQCAYDVAPGglLASVYHLtrIEYGVDQPeeVCIKVFAPRRNPRIPSVFWVW 104
Cdd:PRK07735  308 TLVVEPEKYYEVAELLRFHeqlAFDYLSELHGTDFVTH--MEVYVHL--YSYGKRQS--VAVKVKLDREAPQVESVTPLW 381

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1938539854 105 KSVNFQERESYDMLGIYYDNHPRLKRILMPESWIGWPLRKDY 146
Cdd:PRK07735  382 KGANWPEREAYDLLGIVFKGHPNLSRILLPDDWVGHPLRKDY 423
PRK11742 PRK11742
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
 68-148 1.06e-21

bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional


Pssm-ID: 236965 [Multi-domain]  Cd Length: 575  Bit Score: 90.37  E-value: 1.06e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938539854  68 VYHLTRIEYGVDqpeeVCIKVFAPRRNPRIPSVFWVWKSVNFQERESYDMLGIYYDNHPRLKRILMPESWIGWPLRKDYI 147
Cdd:PRK11742   75 FYHLISIERNRD----IMLKVALSENDLHVPTITKIFPNANWYERETWDMFGITFDGHPHLRRILMPPTWEGHPLRKDYP 150


                  .
gi 1938539854 148 A 148
Cdd:PRK11742  151 A 151
PRK08491 PRK08491
NADH-quinone oxidoreductase subunit C;
28-146 1.29e-21

NADH-quinone oxidoreductase subunit C;


Pssm-ID: 181449  Cd Length: 263  Bit Score: 87.42  E-value: 1.29e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938539854  28 TLQIKPADWHSIAVILYVYGYNYLRSQCAYD-VAPGGLLASVYHLTRIEygvdQPEEVCIKVFAPRrNPRIPSVFWVWKS 106
Cdd:PRK08491   60 VIWIKKDDNFKVLKILKHLGYECLSEMSAIDfLAKKGGFEVFYQLLSMS----KRKRVRVKCFLKE-KEALQSVSFLFKS 134

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1938539854 107 VNFQERESYDMLGIYYDNHPRLKRILMPESWIGWPLRKDY 146
Cdd:PRK08491  135 ANWSEREMYDMFGIVINNHPYLKRILMPDDWVGHPLLKSY 174
PRK13292 PRK13292
NADH-quinone oxidoreductase subunit B/C/D;
68-146 1.98e-19

NADH-quinone oxidoreductase subunit B/C/D;


Pssm-ID: 183955 [Multi-domain]  Cd Length: 788  Bit Score: 83.67  E-value: 1.98e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1938539854  68 VYHLTRIeygvDQPEEVCIKVFAPRRNPRIPSVFWVWKSVNFQERESYDMLGIYYDNHPRLKRILMPESWIGWPLRKDY 146
Cdd:PRK13292  296 NYHLLSF----DTPGHVRIKTELRGRTPELPSATGVFPAANWYEREAFDMFGIRFAGHPNLRRILMPPDWEGHPLRKEH 370
HycE1 COG3262
Ni,Fe-hydrogenase III component G [Energy production and conversion];
28-149 8.43e-12

Ni,Fe-hydrogenase III component G [Energy production and conversion];


Pssm-ID: 442493 [Multi-domain]  Cd Length: 523  Bit Score: 61.89  E-value: 8.43e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1938539854  28 TLQIKPADWHSIAVILYVYGYNYLRSQCAYD-VAPGGLLASVYHLTRIEYGVDqpeeVCIKVFAPRRNPRIPSVFWVWKS 106
Cdd:COG3262    27 WVEVDREDLPELAEFLAEGGGGRLAALWGNDeRELGGGFAVYYVFALEGEGAL----VTLKVSVPKDDPVFPSITDLFPA 102

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1938539854 107 VNFQERESYDMLGIYYDNHPRLKRILMPESW-IGW-PLRKDYIAP 149
Cdd:COG3262   103 ASWYEREIRDLFGIVPEGHPDPRRLVLHDDWpEGIyPLRKDFKGG 147
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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