View
Concise Results
Standard Results
Full Results
single-stranded-DNA-specific exonuclease RecJ [Escherichia coli str. K-12 substr. MG1655]
Protein Classification
single-stranded-DNA-specific exonuclease RecJ ( domain architecture ID 11485183 )
single-stranded-DNA-specific exonuclease RecJ is a specific 5'-3' exonuclease that plays an important role in DNA repair and recombination
List of domain hits
Name
Accession
Description
Interval
E-value
PRK11070
PRK11070 single-stranded-DNA-specific exonuclease RecJ;
3-577
0e+00
single-stranded-DNA-specific exonuclease RecJ;
Pssm-ID: 182944 [Multi-domain]
Cd Length: 575
Bit Score: 1249.58
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 3 QQIQLRRRE V DETADLPA E LPPLLRRLYASRGVRSAQELERSVKG M LPWQQLSG V EKAVE I LYNA F REGTRIIVVGDFDA 82
Cdd:PRK11070 1 QQIQLRRRE A DETADLPA D LPPLLRRLYASRGVRSAQELERSVKG L LPWQQLSG I EKAVE L LYNA L REGTRIIVVGDFDA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 83 DGATSTALSVLA M RSLGCSN I DYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGV E HA RS LGIPV I VTDHH 162
Cdd:PRK11070 81 DGATSTALSVLA L RSLGCSN V DYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGV A HA HA LGIPV L VTDHH 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 163 LPG D TLPAA E AIINPNLRDCNFPSKSLAGVGVAFYLMLALR T FLRDQGWFDER N IAIPNLAELLDLVALGTVADVVPLDA 242
Cdd:PRK11070 161 LPG E TLPAA D AIINPNLRDCNFPSKSLAGVGVAFYLMLALR A FLRDQGWFDER G IAIPNLAELLDLVALGTVADVVPLDA 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 243 NNRIL T WQG M SRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANEL 322
Cdd:PRK11070 241 NNRIL V WQG L SRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANEL 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 323 DALNQTRKEIEQGMQ I EALTLCEKLERS R DTLP G GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRS 402
Cdd:PRK11070 321 DALNQTRKEIEQGMQ V EALTLCEKLERS S DTLP Y GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRS 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 403 IQGLHMRDALERLDTLYPG MM LKFGGHAMAAGLSLEEDKF K LFQQRFGELVTEWLDPSLLQG E V V SDG P LSPAEM TM EVA 482
Cdd:PRK11070 401 IQGLHMRDALERLDTLYPG LI LKFGGHAMAAGLSLEEDKF E LFQQRFGELVTEWLDPSLLQG V V W SDG E LSPAEM SL EVA 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 483 Q LLRDAGPWGQMFPEPLFDG H FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDT A LWPDN G VREV Q LAYKLDINEFR 562
Cdd:PRK11070 481 E LLRDAGPWGQMFPEPLFDG R FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDT T LWPDN S VREV E LAYKLDINEFR 560
570
....*....|....*
gi 1929625943 563 GNRSLQ I IID N IWPI 577
Cdd:PRK11070 561 GNRSLQ L IID H IWPI 575
Name
Accession
Description
Interval
E-value
PRK11070
PRK11070 single-stranded-DNA-specific exonuclease RecJ;
3-577
0e+00
single-stranded-DNA-specific exonuclease RecJ;
Pssm-ID: 182944 [Multi-domain]
Cd Length: 575
Bit Score: 1249.58
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 3 QQIQLRRRE V DETADLPA E LPPLLRRLYASRGVRSAQELERSVKG M LPWQQLSG V EKAVE I LYNA F REGTRIIVVGDFDA 82
Cdd:PRK11070 1 QQIQLRRRE A DETADLPA D LPPLLRRLYASRGVRSAQELERSVKG L LPWQQLSG I EKAVE L LYNA L REGTRIIVVGDFDA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 83 DGATSTALSVLA M RSLGCSN I DYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGV E HA RS LGIPV I VTDHH 162
Cdd:PRK11070 81 DGATSTALSVLA L RSLGCSN V DYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGV A HA HA LGIPV L VTDHH 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 163 LPG D TLPAA E AIINPNLRDCNFPSKSLAGVGVAFYLMLALR T FLRDQGWFDER N IAIPNLAELLDLVALGTVADVVPLDA 242
Cdd:PRK11070 161 LPG E TLPAA D AIINPNLRDCNFPSKSLAGVGVAFYLMLALR A FLRDQGWFDER G IAIPNLAELLDLVALGTVADVVPLDA 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 243 NNRIL T WQG M SRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANEL 322
Cdd:PRK11070 241 NNRIL V WQG L SRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANEL 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 323 DALNQTRKEIEQGMQ I EALTLCEKLERS R DTLP G GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRS 402
Cdd:PRK11070 321 DALNQTRKEIEQGMQ V EALTLCEKLERS S DTLP Y GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRS 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 403 IQGLHMRDALERLDTLYPG MM LKFGGHAMAAGLSLEEDKF K LFQQRFGELVTEWLDPSLLQG E V V SDG P LSPAEM TM EVA 482
Cdd:PRK11070 401 IQGLHMRDALERLDTLYPG LI LKFGGHAMAAGLSLEEDKF E LFQQRFGELVTEWLDPSLLQG V V W SDG E LSPAEM SL EVA 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 483 Q LLRDAGPWGQMFPEPLFDG H FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDT A LWPDN G VREV Q LAYKLDINEFR 562
Cdd:PRK11070 481 E LLRDAGPWGQMFPEPLFDG R FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDT T LWPDN S VREV E LAYKLDINEFR 560
570
....*....|....*
gi 1929625943 563 GNRSLQ I IID N IWPI 577
Cdd:PRK11070 561 GNRSLQ L IID H IWPI 575
RecJ
COG0608 ssDNA-specific exonuclease RecJ, DHH superfamily, may be involved in archaeal DNA replication ...
1-558
0e+00
ssDNA-specific exonuclease RecJ, DHH superfamily, may be involved in archaeal DNA replication intiation [Replication, recombination and repair];
Pssm-ID: 440373 [Multi-domain]
Cd Length: 552
Bit Score: 765.41
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 1 MKQQIQLRRR E VD E TADLPAE L P PLL R RL Y A S RG VRSAQ E ---- L ER S V K GMLPWQQ L SGVE KAVE I L YN A FRE G TR I IV 76
Cdd:COG0608 5 RRWILKPPDP E LV E ALAKELG L S PLL A RL L A N RG ITTPE E aeaf L DP S L K DLHDPFL L KDMD KAVE R L AE A IEN G EK I LI 84
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 77 V GD F D A DGATSTAL S V LAM R S LG C s N I DY LV PNRFE D GYGL S PE V V DQ A HAR G AQ LI V TVD N GISSH AG V EH A RS LGI P V 156
Cdd:COG0608 85 Y GD Y D V DGATSTAL L V RFL R A LG A - N V DY YI PNRFE E GYGL N PE A V ER A AEQ G VD LI I TVD C GISSH EE V AY A KE LGI D V 163
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 157 IVTDHHLPG DT LP A A E AI I NP NLR DC NF P S K S LAGVGVAF Y L ML ALR TF LR DQ gwfderni AI P N LAELLDLVALGTVAD 236
Cdd:COG0608 164 IVTDHHLPG EE LP P A D AI V NP KRP DC DY P F K E LAGVGVAF K L AQ ALR RE LR ER -------- PE P D LAELLDLVALGTVAD 235
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 237 VVPL DAN NRIL TW QG MS R I RA G K c RPG IK ALLEVA NR D AQKLA A S D L GFALGPR L NAAGRL D D M S V GV A LLL C D NIG EAR 316
Cdd:COG0608 236 VVPL TGE NRIL VK QG LK R L RA T K - RPG LR ALLEVA GL D PKEIT A E D I GFALGPR I NAAGRL G D A S L GV E LLL T D DEE EAR 314
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 317 V LA N ELD A LN QT RKEIE QGMQI EAL TLC E K L E rs RDTL P GG L AM Y HPE WH Q GV V GI L ASR I KE RF HRP V I AF A PAG DG TL 396
Cdd:COG0608 315 E LA E ELD E LN RE RKEIE AEITE EAL AQI E E L P -- DLED P KV L VL Y DED WH P GV I GI V ASR L KE KY HRP T I VL A IDE DG IA 392
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 397 KGS G RSI Q G LHMR DAL ERLD tlyp GMM LKFGGHAMAAGL S L E E DKFKL F QQ RF G E L V T E W L DPSL L QGEVVS DG P L SPA E 476
Cdd:COG0608 393 KGS A RSI P G FDLY DAL DACS ---- DLL LKFGGHAMAAGL T L K E ENLEA F RE RF N E V V A E Q L AEED L EPVLEI DG E L PLS E 468
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 477 M T M E V A QL L RDAG P W GQ MF PEP L F D G - HF R LLQ QR L VG ER -- HLK VMVEP vg GG PL LD G IAFN VDTA L -- W P DN G V R e V Q 551
Cdd:COG0608 469 L T L E L A EE L EQLE P F GQ GN PEP V F L G r NV R VVS QR I VG KD gn HLK LTLRD -- GG RR LD A IAFN AGDK L ee L P NA G K R - V D 545
....*..
gi 1929625943 552 L AY K LDI 558
Cdd:COG0608 546 I AY T LDI 552
recJ
TIGR00644 single-stranded-DNA-specific exonuclease RecJ; All proteins in this family are 5'-3' ...
22-574
0e+00
single-stranded-DNA-specific exonuclease RecJ; All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273193 [Multi-domain]
Cd Length: 539
Bit Score: 694.43
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 22 L P P L L RRLY ASRG VRS A Q ELE RSVKGM L PWQQ ---- L SGV EKAVE I L YN A FREGTR I IVV GD F D A DG A TSTA LS V LAMRS 97
Cdd:TIGR00644 1 L G P I L AQIL ASRG ITD A E ELE NFLNPK L KDLP ppfl L LDM EKAVE R L IE A VENNEK I LIY GD Y D V DG I TSTA IL V EFLEL 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 98 LG c SNI DY LV PNRF ED GYG LS PE VVDQA H AR G AQ LI V TVDNGI SS H AGVEH A RS LG IP VIVTDHHL PGDT LP A A E AI I NP 177
Cdd:TIGR00644 81 LG - VKV DY YI PNRF TE GYG PN PE AFRKL H ED G VS LI I TVDNGI TA H EEIKY A KE LG LD VIVTDHHL VPED LP E A A AI V NP 159
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 178 N LR DCN F P S K S LAGVGVAF Y L ML AL RTF LR DQ gwfdernia I P N L A E L LDLVALGT V ADVVPL DAN NR I L TWQ G MSRI R A 257
Cdd:TIGR00644 160 N RP DCN Y P Q K E LAGVGVAF K L VQ AL YEE LR KP --------- K P D L E E F LDLVALGT I ADVVPL TGE NR A L VKK G LKVL R K 230
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 258 G K c RPG I KALLEVA NR D AQ KL AAS D L GF AL GPR L NAAGRL D D M S V GV A LLL C D NIG EAR V LA N ELD A LNQ T RK E IEQ GMQ 337
Cdd:TIGR00644 231 Q K - RPG L KALLEVA GV D KD KL SST D I GF II GPR I NAAGRL G D A S L GV E LLL T D DPK EAR E LA E ELD S LNQ E RK D IEQ TVL 309
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 338 I EAL TLC E KL ersr D T LPGGLAMYHPE WH Q GV V GI L ASR IK E RFHR PV IA FA P - A G D G TL KGSGRSI Q G LHMR DAL ERLD 416
Cdd:TIGR00644 310 E EAL AIA E AE ---- E T NDSVIVVAKEN WH E GV L GI V ASR LA E EYNK PV LV FA I d E G K G IA KGSGRSI S G IDLY DAL SEAR 385
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 417 TL ypg MM LKFGGHAMAAGLSL EEDKFKL F QQRFG EL VTEW L DPSLLQGEVVS DG P L S P AEMTM E VAQL L RDAG P W GQ MF P 496
Cdd:TIGR00644 386 ES --- LF LKFGGHAMAAGLSL KRENLEE F REKLN EL FSKS L EKDESEPILEV DG E L P P SDIDF E LIRQ L ESLE P F GQ GN P 462
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1929625943 497 EPLF DG - HF R LLQQR L V G ER HLK VMVEP vg G GPLLDG IAFN VDTA L WPD NG VREVQL A Y KL D INE FR GN RSL Q I II DN I 574
Cdd:TIGR00644 463 EPLF VL k DL R VEDIK L L G GN HLK LSLKS -- G EKNIEA IAFN AGEQ L LEL NG GEPIDV A G KL K INE WN GN KTP Q L II KD I 539
DHH
pfam01368 DHH family; It is predicted that this family of proteins all perform a phosphoesterase ...
73-233
1.01e-46
DHH family; It is predicted that this family of proteins all perform a phosphoesterase function. It included the single stranded DNA exonuclease RecJ.
Pssm-ID: 460177 [Multi-domain]
Cd Length: 145
Bit Score: 160.43
E-value: 1.01e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 73 R I IVV G DF -- D A DG AT S TALSVLAMRS L GCSNID Y LV P N R F E D GYG LS PE VVDQAHAR g AQ L IV TVD N GI S S HA G V E H A R 150
Cdd:pfam01368 1 K I VIY G HY np D G DG IG S ALGLYRYLKE L VGPDVE Y YI P D R L E E GYG IN PE AIEELIDF - DT L LI TVD C GI K S VE G I E L A K 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 151 S LGI P VIV T DHHLP G D T LP A A E AIINP NLRDCN fpsksl AGVG V A F Y L M lalrtflrdqg WFDERNIAIPNLA EL L DL VA 230
Cdd:pfam01368 80 E LGI D VIV I DHHLP N D F LP D A D AIINP REPPAS ------ STSE V V F K L L ----------- QYAYGEEGKEIDK EL A DL LL 142
...
gi 1929625943 231 LG T 233
Cdd:pfam01368 143 LG I 145
Name
Accession
Description
Interval
E-value
PRK11070
PRK11070 single-stranded-DNA-specific exonuclease RecJ;
3-577
0e+00
single-stranded-DNA-specific exonuclease RecJ;
Pssm-ID: 182944 [Multi-domain]
Cd Length: 575
Bit Score: 1249.58
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 3 QQIQLRRRE V DETADLPA E LPPLLRRLYASRGVRSAQELERSVKG M LPWQQLSG V EKAVE I LYNA F REGTRIIVVGDFDA 82
Cdd:PRK11070 1 QQIQLRRRE A DETADLPA D LPPLLRRLYASRGVRSAQELERSVKG L LPWQQLSG I EKAVE L LYNA L REGTRIIVVGDFDA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 83 DGATSTALSVLA M RSLGCSN I DYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGV E HA RS LGIPV I VTDHH 162
Cdd:PRK11070 81 DGATSTALSVLA L RSLGCSN V DYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGV A HA HA LGIPV L VTDHH 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 163 LPG D TLPAA E AIINPNLRDCNFPSKSLAGVGVAFYLMLALR T FLRDQGWFDER N IAIPNLAELLDLVALGTVADVVPLDA 242
Cdd:PRK11070 161 LPG E TLPAA D AIINPNLRDCNFPSKSLAGVGVAFYLMLALR A FLRDQGWFDER G IAIPNLAELLDLVALGTVADVVPLDA 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 243 NNRIL T WQG M SRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANEL 322
Cdd:PRK11070 241 NNRIL V WQG L SRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANEL 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 323 DALNQTRKEIEQGMQ I EALTLCEKLERS R DTLP G GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRS 402
Cdd:PRK11070 321 DALNQTRKEIEQGMQ V EALTLCEKLERS S DTLP Y GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRS 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 403 IQGLHMRDALERLDTLYPG MM LKFGGHAMAAGLSLEEDKF K LFQQRFGELVTEWLDPSLLQG E V V SDG P LSPAEM TM EVA 482
Cdd:PRK11070 401 IQGLHMRDALERLDTLYPG LI LKFGGHAMAAGLSLEEDKF E LFQQRFGELVTEWLDPSLLQG V V W SDG E LSPAEM SL EVA 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 483 Q LLRDAGPWGQMFPEPLFDG H FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDT A LWPDN G VREV Q LAYKLDINEFR 562
Cdd:PRK11070 481 E LLRDAGPWGQMFPEPLFDG R FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDT T LWPDN S VREV E LAYKLDINEFR 560
570
....*....|....*
gi 1929625943 563 GNRSLQ I IID N IWPI 577
Cdd:PRK11070 561 GNRSLQ L IID H IWPI 575
RecJ
COG0608 ssDNA-specific exonuclease RecJ, DHH superfamily, may be involved in archaeal DNA replication ...
1-558
0e+00
ssDNA-specific exonuclease RecJ, DHH superfamily, may be involved in archaeal DNA replication intiation [Replication, recombination and repair];
Pssm-ID: 440373 [Multi-domain]
Cd Length: 552
Bit Score: 765.41
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 1 MKQQIQLRRR E VD E TADLPAE L P PLL R RL Y A S RG VRSAQ E ---- L ER S V K GMLPWQQ L SGVE KAVE I L YN A FRE G TR I IV 76
Cdd:COG0608 5 RRWILKPPDP E LV E ALAKELG L S PLL A RL L A N RG ITTPE E aeaf L DP S L K DLHDPFL L KDMD KAVE R L AE A IEN G EK I LI 84
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 77 V GD F D A DGATSTAL S V LAM R S LG C s N I DY LV PNRFE D GYGL S PE V V DQ A HAR G AQ LI V TVD N GISSH AG V EH A RS LGI P V 156
Cdd:COG0608 85 Y GD Y D V DGATSTAL L V RFL R A LG A - N V DY YI PNRFE E GYGL N PE A V ER A AEQ G VD LI I TVD C GISSH EE V AY A KE LGI D V 163
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 157 IVTDHHLPG DT LP A A E AI I NP NLR DC NF P S K S LAGVGVAF Y L ML ALR TF LR DQ gwfderni AI P N LAELLDLVALGTVAD 236
Cdd:COG0608 164 IVTDHHLPG EE LP P A D AI V NP KRP DC DY P F K E LAGVGVAF K L AQ ALR RE LR ER -------- PE P D LAELLDLVALGTVAD 235
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 237 VVPL DAN NRIL TW QG MS R I RA G K c RPG IK ALLEVA NR D AQKLA A S D L GFALGPR L NAAGRL D D M S V GV A LLL C D NIG EAR 316
Cdd:COG0608 236 VVPL TGE NRIL VK QG LK R L RA T K - RPG LR ALLEVA GL D PKEIT A E D I GFALGPR I NAAGRL G D A S L GV E LLL T D DEE EAR 314
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 317 V LA N ELD A LN QT RKEIE QGMQI EAL TLC E K L E rs RDTL P GG L AM Y HPE WH Q GV V GI L ASR I KE RF HRP V I AF A PAG DG TL 396
Cdd:COG0608 315 E LA E ELD E LN RE RKEIE AEITE EAL AQI E E L P -- DLED P KV L VL Y DED WH P GV I GI V ASR L KE KY HRP T I VL A IDE DG IA 392
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 397 KGS G RSI Q G LHMR DAL ERLD tlyp GMM LKFGGHAMAAGL S L E E DKFKL F QQ RF G E L V T E W L DPSL L QGEVVS DG P L SPA E 476
Cdd:COG0608 393 KGS A RSI P G FDLY DAL DACS ---- DLL LKFGGHAMAAGL T L K E ENLEA F RE RF N E V V A E Q L AEED L EPVLEI DG E L PLS E 468
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 477 M T M E V A QL L RDAG P W GQ MF PEP L F D G - HF R LLQ QR L VG ER -- HLK VMVEP vg GG PL LD G IAFN VDTA L -- W P DN G V R e V Q 551
Cdd:COG0608 469 L T L E L A EE L EQLE P F GQ GN PEP V F L G r NV R VVS QR I VG KD gn HLK LTLRD -- GG RR LD A IAFN AGDK L ee L P NA G K R - V D 545
....*..
gi 1929625943 552 L AY K LDI 558
Cdd:COG0608 546 I AY T LDI 552
recJ
TIGR00644 single-stranded-DNA-specific exonuclease RecJ; All proteins in this family are 5'-3' ...
22-574
0e+00
single-stranded-DNA-specific exonuclease RecJ; All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273193 [Multi-domain]
Cd Length: 539
Bit Score: 694.43
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 22 L P P L L RRLY ASRG VRS A Q ELE RSVKGM L PWQQ ---- L SGV EKAVE I L YN A FREGTR I IVV GD F D A DG A TSTA LS V LAMRS 97
Cdd:TIGR00644 1 L G P I L AQIL ASRG ITD A E ELE NFLNPK L KDLP ppfl L LDM EKAVE R L IE A VENNEK I LIY GD Y D V DG I TSTA IL V EFLEL 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 98 LG c SNI DY LV PNRF ED GYG LS PE VVDQA H AR G AQ LI V TVDNGI SS H AGVEH A RS LG IP VIVTDHHL PGDT LP A A E AI I NP 177
Cdd:TIGR00644 81 LG - VKV DY YI PNRF TE GYG PN PE AFRKL H ED G VS LI I TVDNGI TA H EEIKY A KE LG LD VIVTDHHL VPED LP E A A AI V NP 159
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 178 N LR DCN F P S K S LAGVGVAF Y L ML AL RTF LR DQ gwfdernia I P N L A E L LDLVALGT V ADVVPL DAN NR I L TWQ G MSRI R A 257
Cdd:TIGR00644 160 N RP DCN Y P Q K E LAGVGVAF K L VQ AL YEE LR KP --------- K P D L E E F LDLVALGT I ADVVPL TGE NR A L VKK G LKVL R K 230
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 258 G K c RPG I KALLEVA NR D AQ KL AAS D L GF AL GPR L NAAGRL D D M S V GV A LLL C D NIG EAR V LA N ELD A LNQ T RK E IEQ GMQ 337
Cdd:TIGR00644 231 Q K - RPG L KALLEVA GV D KD KL SST D I GF II GPR I NAAGRL G D A S L GV E LLL T D DPK EAR E LA E ELD S LNQ E RK D IEQ TVL 309
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 338 I EAL TLC E KL ersr D T LPGGLAMYHPE WH Q GV V GI L ASR IK E RFHR PV IA FA P - A G D G TL KGSGRSI Q G LHMR DAL ERLD 416
Cdd:TIGR00644 310 E EAL AIA E AE ---- E T NDSVIVVAKEN WH E GV L GI V ASR LA E EYNK PV LV FA I d E G K G IA KGSGRSI S G IDLY DAL SEAR 385
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 417 TL ypg MM LKFGGHAMAAGLSL EEDKFKL F QQRFG EL VTEW L DPSLLQGEVVS DG P L S P AEMTM E VAQL L RDAG P W GQ MF P 496
Cdd:TIGR00644 386 ES --- LF LKFGGHAMAAGLSL KRENLEE F REKLN EL FSKS L EKDESEPILEV DG E L P P SDIDF E LIRQ L ESLE P F GQ GN P 462
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1929625943 497 EPLF DG - HF R LLQQR L V G ER HLK VMVEP vg G GPLLDG IAFN VDTA L WPD NG VREVQL A Y KL D INE FR GN RSL Q I II DN I 574
Cdd:TIGR00644 463 EPLF VL k DL R VEDIK L L G GN HLK LSLKS -- G EKNIEA IAFN AGEQ L LEL NG GEPIDV A G KL K INE WN GN KTP Q L II KD I 539
DHH
pfam01368 DHH family; It is predicted that this family of proteins all perform a phosphoesterase ...
73-233
1.01e-46
DHH family; It is predicted that this family of proteins all perform a phosphoesterase function. It included the single stranded DNA exonuclease RecJ.
Pssm-ID: 460177 [Multi-domain]
Cd Length: 145
Bit Score: 160.43
E-value: 1.01e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 73 R I IVV G DF -- D A DG AT S TALSVLAMRS L GCSNID Y LV P N R F E D GYG LS PE VVDQAHAR g AQ L IV TVD N GI S S HA G V E H A R 150
Cdd:pfam01368 1 K I VIY G HY np D G DG IG S ALGLYRYLKE L VGPDVE Y YI P D R L E E GYG IN PE AIEELIDF - DT L LI TVD C GI K S VE G I E L A K 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 151 S LGI P VIV T DHHLP G D T LP A A E AIINP NLRDCN fpsksl AGVG V A F Y L M lalrtflrdqg WFDERNIAIPNLA EL L DL VA 230
Cdd:pfam01368 80 E LGI D VIV I DHHLP N D F LP D A D AIINP REPPAS ------ STSE V V F K L L ----------- QYAYGEEGKEIDK EL A DL LL 142
...
gi 1929625943 231 LG T 233
Cdd:pfam01368 143 LG I 145
RecJ
COG4199 ssDNA-specific exonuclease RecJ [Replication, recombination and repair];
69-571
3.04e-46
ssDNA-specific exonuclease RecJ [Replication, recombination and repair];
Pssm-ID: 443353 [Multi-domain]
Cd Length: 774
Bit Score: 173.73
E-value: 3.04e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 69 REGTR II VVGDF D A D GATS T ALS V LAMRS L GCSNI DY LV PNRF ED G Y G LSPEVVDQ A H A R GA Q LI VT V DNG I SSHAGVEH 148
Cdd:COG4199 74 IIEEA II IIEGD D D D DGDD T TSV V STTLL L LGALL DY YI PNRF RF G G G PGEAGPAE A A A G GA G LI II V TVI I AVNGVIAA 153
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 149 A RSL G IPV I VT DHH L P GDTL P A A E AI IN P NLRDCNF P SKS LAG V GVA FYLML AL R tflrdqgwfderni AIPN L AE LL D L 228
Cdd:COG4199 154 A EEK G LDI I ID DHH H P EHEE P L A D AI AP P PPPPPPP P FGE LAG G GVA AAVAA AL L -------------- LGLP L LL LL L L 219
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 229 VA L GTV AD V V P L DA N N R I L TWQGMSRIRAG kc RPGIKA LL EV A NRD A QKLAASDL GF AL GP R LNAA G RL DDMSVG VALLL 308
Cdd:COG4199 220 AL L TAA AD L V L L LE N R R L L RRLLLLKLLST -- ERLGLL LL KA A LLL A SIIEEEEE GF GG GP I LNAA A RL GRAAAA VALLL 297
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 309 CDNIG E ARVL A NELD A L N QT R K EI EQGMQI EA LTLC E KL E RSR D TLPGGL A M yhp EWHQ G V VG ILA S RIKERFH RP VIAF 388
Cdd:COG4199 298 LLDEE E EEEA A ELAE A Q N EE R Q EI VKIIEA EA IEEE E EA E EKD D NVVVVV A E --- GGWN G G VG VVV S VVVVKYR RP PLIL 374
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 389 A -- PAGD G TLK G SGR SI QGLHMRDA L ERLDT L YPG mmlk F GG HAM AA GLS L E ED k FKLFQQRFG EL VTEW - L DPSL L QG E 465
Cdd:COG4199 375 L id DEEK G KAG G GSS SI SFFLFLLE L SLERL L LLF ---- G GG GGA AA AAL L L ED - VEDLLRLLL EL AALL e L LEED L PP E 449
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 466 VVS D GP L SPA E MTMEVAQLLRDAG P W G QMF P E P L F DGHFRLLQQ R LV G -- ER HLK VMVEPV G G gp LLD GIA F NVDTA L WP 543
Cdd:COG4199 450 LID D LL L ISD E IIIIIIEEELLLP P G G GPP P P P K F VLLEIAINK R RI G ga NK HLK KLLTGE G E -- LLD AGG F FGGGL L EE 527
490 500
....*....|....*....|....*...
gi 1929625943 544 DNGVREVQLAYK L D INE FRGN R SL Q II I 571
Cdd:COG4199 528 ELPDTIIVVVGG L S INE WNNR R KP Q LM I 555
RecJ_OB
pfam17768 RecJ OB domain; This OB-fold is found in RecJ proteins where is binds to ssDNA.
469-572
2.30e-27
RecJ OB domain; This OB-fold is found in RecJ proteins where is binds to ssDNA.
Pssm-ID: 465495 [Multi-domain]
Cd Length: 107
Bit Score: 106.03
E-value: 2.30e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 469 D GP L SPAEM T M E VAQL L RDAG P W GQ MF PEP L F DGHF - R L L QQ R LV G E -- R HLK VMVE pv G GG PL LD G IAFN VDTA L WPDN 545
Cdd:pfam17768 2 D AE L PLSDI T L E LIEE L ERLE P F GQ GN PEP V F ALRN v R V L DV R II G K dg N HLK LTLR -- D GG RS LD A IAFN MGEL L PELA 79
90 100
....*....|....*....|....*..
gi 1929625943 546 GVRE V QL AY K L D INE FR G N RSLQ II I D 572
Cdd:pfam17768 80 SGDK V DI AY T L E INE WN G R RSLQ LR I K 106
DHHA1
pfam02272 DHHA1 domain; This domain is often found adjacent to the DHH domain pfam01368 and is called ...
322-453
4.51e-24
DHHA1 domain; This domain is often found adjacent to the DHH domain pfam01368 and is called DHHA1 for DHH associated domain. This domain is diagnostic of DHH subfamily 1 members. This domains is also found in alanyl tRNA synthetase, suggesting that this domain may have an RNA binding function. The domain is about 60 residues long and contains a conserved GG motif.
Pssm-ID: 396724 [Multi-domain]
Cd Length: 139
Bit Score: 97.90
E-value: 4.51e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1929625943 322 L DA LN QTR KE I E QGMQ -- I EAL T L CEKL E ----- RSRDTLPGGL A MYHPE W HQ G VV GI L A S R I K ERFHR PVI AFAPAG DG 394
Cdd:pfam02272 1 L ES LN EEL KE L E KELE el K EAL A L LKAK E lleka EEINGVKVLV A EVGEG W DA G AL GI A A D R L K KKLGD PVI VLVAKE DG 80
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1929625943 395 - TL K G S G RS I -- Q G LHMRDA L ERLDT lyp GMMLKF GGH AM AAG LSLEED K FKLFQQRFG E LV 453
Cdd:pfam02272 81 d KV K V S A RS S kd K G VDAGEL L KEVAA --- ILGGGG GGH DL AAG AGIDAE K LDEALELLE E AI 139
PykA2
COG3848 Phosphohistidine swiveling domain of PEP-utilizing enzymes [Signal transduction mechanisms];
133-158
6.23e-03
Phosphohistidine swiveling domain of PEP-utilizing enzymes [Signal transduction mechanisms];
Pssm-ID: 443058
Cd Length: 321
Bit Score: 39.11
E-value: 6.23e-03
10 20
....*....|....*....|....*.
gi 1929625943 133 I V T VDN G IS SHA GVE h ARS LGIPVIV 158
Cdd:COG3848 265 I I T EEG G LT SHA AIV - GLE LGIPVIV 289
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
