|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03210 |
PLN03210 |
Resistant to P. syringae 6; Provisional |
12-1042 |
0e+00 |
|
Resistant to P. syringae 6; Provisional
Pssm-ID: 215633 [Multi-domain] Cd Length: 1153 Bit Score: 829.13 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 12 TWRYRVFTNFHGPDVRKTFLSHLRKQFSYNGISMFDDQSIERSQTIVPALTGAIKESRISIVVLSKNYASSRWCLDELLE 91
Cdd:PLN03210 10 NWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELLE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 92 ILKCREDIGQIVMTVFYGVDPSDVRKQTGEFGIAFNKTCEGKTNEETQKWSKALNDVGNIAGEHFFNWDNEAKMIEKIAR 171
Cdd:PLN03210 90 IVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIAN 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 172 DVSNKLNATISWDFEDMVGIEAHLQKMQSLLHLDYEDGAMiVGIYGPAGIGKTTIARALHSRLSSSFQLTCFME------ 245
Cdd:PLN03210 170 DVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRM-VGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDrafisk 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 246 --NIRGSYNSglDEYGLKLRLQEQLLSKVLNHDGIRINHLGAIPERLCDQKVLIILDDVDDLQQLEALANETNWFGPGSR 323
Cdd:PLN03210 249 smEIYSSANP--DDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSR 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 324 IIVTTEDQELLEQHDVNKKYHVDFPTREEACKIFCTYAFRRSFAPYGFEKLAERVTWLCSNLPLGLRVMGSTLRGKKEDD 403
Cdd:PLN03210 327 IIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKED 406
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 404 WEGILRRLENSLDRKIDGVLRVGYDHLC-EDDQFLYLLIAFFFNYVDDDHVKAMLVEDNLDVKLGLKTLAYKSLIQISAE 482
Cdd:PLN03210 407 WMDMLPRLRNGLDGKIEKTLRVSYDGLNnKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVRED 486
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 483 gNIVMHKLLQRVGREAIQRQ--EPTKRRILIDAREICDVLRYGKGTSNVSGISFDTSDISEVTISDDAFKRLHDLRFLKV 560
Cdd:PLN03210 487 -IVEMHSLLQEMGKEIVRAQsnEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKF 565
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 561 TKSRYDGK--YRMNIPAEIE-FPCLLRLLHWEAYPSKCLPPTFNPEFLVELNMQESQLEHLWSGTQSLRNLKNMDLRGST 637
Cdd:PLN03210 566 YTKKWDQKkeVRWHLPEGFDyLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSK 645
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 638 NLKELPDLTNATNLEDLNLNSCESLVEIPSSFSHLHKLKNLWMSYCINLQVIPAHMNLVSLERVTLTGCSRLRNIPVIST 717
Cdd:PLN03210 646 NLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDIST 725
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 718 HISYLDISKTTELEYVS---------------ASIALWCRLG-----------SLDMSYNENFMGLTHLPMS---LTQL- 767
Cdd:PLN03210 726 NISWLDLDETAIEEFPSnlrlenldelilcemKSEKLWERVQpltplmtmlspSLTRLFLSDIPSLVELPSSiqnLHKLe 805
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 768 ---ILRYSDIERIPDCIKaLHQLFSLDLTGCRRLASLPELPGSLLDL--------------------------------- 811
Cdd:PLN03210 806 hleIENCINLETLPTGIN-LESLESLDLSGCSRLRTFPDISTNISDLnlsrtgieevpwwiekfsnlsfldmngcnnlqr 884
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 812 --------------EAEDCESLETVF---SPLHTPRAH------------LYFTNCFKLGGQARRAIIRRRSEFIgmslL 862
Cdd:PLN03210 885 vslnisklkhletvDFSDCGALTEASwngSPSEVAMATdnihsklpstvcINFINCFNLDQEALLQQQSIFKQLI----L 960
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 863 PGREVPAEFDHRAKGNSLTII-LNGNRPSYDYTQYMVCVVISTNQEITKIRNFSSTLLC--------HINGYIFPDYKKV 933
Cdd:PLN03210 961 SGEEVPSYFTHRTTGASLTNIpLLHISPCQPFFRFRACAVVDSESFFIISVSFDIQVCCrfidrlgnHFDSPYQPHVFSV 1040
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 934 YIIGDvskcrreHLFIFHTSYHLHIDPSGASR------EIVFEFRSKFKDFDIIECGVKIWTAQS--IKREYLVFEDDND 1005
Cdd:PLN03210 1041 TKKGS-------HLVIFDCCFPLNEDNAPLAElnydhvDIQFRLTNKNSQLKLKGCGIRLSEDDSslNNTLPNVEEADDD 1113
|
1130 1140 1150
....*....|....*....|....*....|....*..
gi 1913122545 1006 ikhddhtNRVNGPYKASNVDYKSVSRKRPRKPDLKLE 1042
Cdd:PLN03210 1114 -------NPVNGSEHWEDCEDSALERESERTKDREMR 1143
|
|
| TIR |
pfam01582 |
TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular ... |
15-180 |
1.04e-68 |
|
TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades.
Pssm-ID: 396246 [Multi-domain] Cd Length: 165 Bit Score: 226.86 E-value: 1.04e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 15 YRVFTNFHGPDVRKTFLSHLRKQFSYNGISMF-DDQSIERSQTIVPALTGAIKESRISIVVLSKNYASSRWCLDELLEIL 93
Cdd:pfam01582 1 YDVFLSFRGSDTREWFVSHLLKELKQKGIKLFiDDRDLEPGEAIAPELLSAIEKSRRSVVVLSPNYASSGWCLDELVKIL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 94 KCREDIGQIVMTVFYGVDPSDVRKQTGEFGIAFNKTCEGKTNEETQKWSKALNDVGNIagEHFFNWDNEAKMIEKIARDV 173
Cdd:pfam01582 81 ECALDLGQKVIPIFYEVDPSDVRKQTGSFGKAFKKHKKVLTEEKVLKWRGALNEVANI--WHSKSVSDESKFWKKIAYDI 158
|
....*..
gi 1913122545 174 SNKLNAT 180
Cdd:pfam01582 159 SNKLNGT 165
|
|
| TIR |
smart00255 |
Toll - interleukin 1 - resistance; |
14-151 |
4.01e-38 |
|
Toll - interleukin 1 - resistance;
Pssm-ID: 214587 [Multi-domain] Cd Length: 140 Bit Score: 139.00 E-value: 4.01e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 14 RYRVFTNFHG-PDVRKTFLSHLRKQFSYNGISMFDDQSIERSQtIVPALTGAIKESRISIVVLSKNYASSRWCLDELLEI 92
Cdd:smart00255 1 EYDVFISYSGkEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGG-DLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1913122545 93 LKCR-EDIGQIVMTVFYGVDPSDVRKQTGEFGIAFNKTCEGKTNEET-QKWSKALNDVGNI 151
Cdd:smart00255 80 LENAlEEGGLRVIPIFYEVIPSDVRKQPGKFRKVFKKNYLKWPEDEKeQFWKKALYAVPSK 140
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
615-812 |
1.26e-13 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 74.20 E-value: 1.26e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 615 LEHLWSGTQSLRNLKNMDLRGSTNLKEL-----PDLTNATNLEDLNLNSCEsLVEIPSSFSHLHKLKNLWMSYCiNLQVI 689
Cdd:COG4886 74 LLLLSLLLLSLLLLGLTDLGDLTNLTELdlsgnEELSNLTNLESLDLSGNQ-LTDLPEELANLTNLKELDLSNN-QLTDL 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 690 PAhmnlvslervTLTGCSRLRnipvisthisYLDISKTtELEYVSASIALWCRLGSLDMSYNEnfmgLTHLPMS------ 763
Cdd:COG4886 152 PE----------PLGNLTNLK----------SLDLSNN-QLTDLPEELGNLTNLKELDLSNNQ----ITDLPEPlgnltn 206
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1913122545 764 LTQLILRYSDIERIPDCIKALHQLFSLDLTGCrRLASLPELpGSLLDLE 812
Cdd:COG4886 207 LEELDLSGNQLTDLPEPLANLTNLETLDLSNN-QLTDLPEL-GNLTNLE 253
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
215-335 |
1.63e-04 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 42.90 E-value: 1.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 215 IYGPAGIGKTTIARALHsRLSSSFQLTCFMENIRGSYNSGLDEYGLKLRLQEQLLSKVLNHdgirinhlgaiperlcdQK 294
Cdd:cd00009 24 LYGPPGTGKTTLARAIA-NELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKA-----------------KP 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1913122545 295 VLIILDDVDD---------LQQLEALANETNWFGPGSRIIVTTEDQELLE 335
Cdd:cd00009 86 GVLFIDEIDSlsrgaqnalLRVLETLNDLRIDRENVRVIGATNRPLLGDL 135
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03210 |
PLN03210 |
Resistant to P. syringae 6; Provisional |
12-1042 |
0e+00 |
|
Resistant to P. syringae 6; Provisional
Pssm-ID: 215633 [Multi-domain] Cd Length: 1153 Bit Score: 829.13 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 12 TWRYRVFTNFHGPDVRKTFLSHLRKQFSYNGISMFDDQSIERSQTIVPALTGAIKESRISIVVLSKNYASSRWCLDELLE 91
Cdd:PLN03210 10 NWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELLE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 92 ILKCREDIGQIVMTVFYGVDPSDVRKQTGEFGIAFNKTCEGKTNEETQKWSKALNDVGNIAGEHFFNWDNEAKMIEKIAR 171
Cdd:PLN03210 90 IVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIAN 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 172 DVSNKLNATISWDFEDMVGIEAHLQKMQSLLHLDYEDGAMiVGIYGPAGIGKTTIARALHSRLSSSFQLTCFME------ 245
Cdd:PLN03210 170 DVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRM-VGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDrafisk 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 246 --NIRGSYNSglDEYGLKLRLQEQLLSKVLNHDGIRINHLGAIPERLCDQKVLIILDDVDDLQQLEALANETNWFGPGSR 323
Cdd:PLN03210 249 smEIYSSANP--DDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSR 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 324 IIVTTEDQELLEQHDVNKKYHVDFPTREEACKIFCTYAFRRSFAPYGFEKLAERVTWLCSNLPLGLRVMGSTLRGKKEDD 403
Cdd:PLN03210 327 IIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKED 406
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 404 WEGILRRLENSLDRKIDGVLRVGYDHLC-EDDQFLYLLIAFFFNYVDDDHVKAMLVEDNLDVKLGLKTLAYKSLIQISAE 482
Cdd:PLN03210 407 WMDMLPRLRNGLDGKIEKTLRVSYDGLNnKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVRED 486
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 483 gNIVMHKLLQRVGREAIQRQ--EPTKRRILIDAREICDVLRYGKGTSNVSGISFDTSDISEVTISDDAFKRLHDLRFLKV 560
Cdd:PLN03210 487 -IVEMHSLLQEMGKEIVRAQsnEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKF 565
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 561 TKSRYDGK--YRMNIPAEIE-FPCLLRLLHWEAYPSKCLPPTFNPEFLVELNMQESQLEHLWSGTQSLRNLKNMDLRGST 637
Cdd:PLN03210 566 YTKKWDQKkeVRWHLPEGFDyLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSK 645
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 638 NLKELPDLTNATNLEDLNLNSCESLVEIPSSFSHLHKLKNLWMSYCINLQVIPAHMNLVSLERVTLTGCSRLRNIPVIST 717
Cdd:PLN03210 646 NLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDIST 725
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 718 HISYLDISKTTELEYVS---------------ASIALWCRLG-----------SLDMSYNENFMGLTHLPMS---LTQL- 767
Cdd:PLN03210 726 NISWLDLDETAIEEFPSnlrlenldelilcemKSEKLWERVQpltplmtmlspSLTRLFLSDIPSLVELPSSiqnLHKLe 805
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 768 ---ILRYSDIERIPDCIKaLHQLFSLDLTGCRRLASLPELPGSLLDL--------------------------------- 811
Cdd:PLN03210 806 hleIENCINLETLPTGIN-LESLESLDLSGCSRLRTFPDISTNISDLnlsrtgieevpwwiekfsnlsfldmngcnnlqr 884
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 812 --------------EAEDCESLETVF---SPLHTPRAH------------LYFTNCFKLGGQARRAIIRRRSEFIgmslL 862
Cdd:PLN03210 885 vslnisklkhletvDFSDCGALTEASwngSPSEVAMATdnihsklpstvcINFINCFNLDQEALLQQQSIFKQLI----L 960
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 863 PGREVPAEFDHRAKGNSLTII-LNGNRPSYDYTQYMVCVVISTNQEITKIRNFSSTLLC--------HINGYIFPDYKKV 933
Cdd:PLN03210 961 SGEEVPSYFTHRTTGASLTNIpLLHISPCQPFFRFRACAVVDSESFFIISVSFDIQVCCrfidrlgnHFDSPYQPHVFSV 1040
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 934 YIIGDvskcrreHLFIFHTSYHLHIDPSGASR------EIVFEFRSKFKDFDIIECGVKIWTAQS--IKREYLVFEDDND 1005
Cdd:PLN03210 1041 TKKGS-------HLVIFDCCFPLNEDNAPLAElnydhvDIQFRLTNKNSQLKLKGCGIRLSEDDSslNNTLPNVEEADDD 1113
|
1130 1140 1150
....*....|....*....|....*....|....*..
gi 1913122545 1006 ikhddhtNRVNGPYKASNVDYKSVSRKRPRKPDLKLE 1042
Cdd:PLN03210 1114 -------NPVNGSEHWEDCEDSALERESERTKDREMR 1143
|
|
| TIR |
pfam01582 |
TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular ... |
15-180 |
1.04e-68 |
|
TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades.
Pssm-ID: 396246 [Multi-domain] Cd Length: 165 Bit Score: 226.86 E-value: 1.04e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 15 YRVFTNFHGPDVRKTFLSHLRKQFSYNGISMF-DDQSIERSQTIVPALTGAIKESRISIVVLSKNYASSRWCLDELLEIL 93
Cdd:pfam01582 1 YDVFLSFRGSDTREWFVSHLLKELKQKGIKLFiDDRDLEPGEAIAPELLSAIEKSRRSVVVLSPNYASSGWCLDELVKIL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 94 KCREDIGQIVMTVFYGVDPSDVRKQTGEFGIAFNKTCEGKTNEETQKWSKALNDVGNIagEHFFNWDNEAKMIEKIARDV 173
Cdd:pfam01582 81 ECALDLGQKVIPIFYEVDPSDVRKQTGSFGKAFKKHKKVLTEEKVLKWRGALNEVANI--WHSKSVSDESKFWKKIAYDI 158
|
....*..
gi 1913122545 174 SNKLNAT 180
Cdd:pfam01582 159 SNKLNGT 165
|
|
| TIR |
smart00255 |
Toll - interleukin 1 - resistance; |
14-151 |
4.01e-38 |
|
Toll - interleukin 1 - resistance;
Pssm-ID: 214587 [Multi-domain] Cd Length: 140 Bit Score: 139.00 E-value: 4.01e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 14 RYRVFTNFHG-PDVRKTFLSHLRKQFSYNGISMFDDQSIERSQtIVPALTGAIKESRISIVVLSKNYASSRWCLDELLEI 92
Cdd:smart00255 1 EYDVFISYSGkEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGG-DLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1913122545 93 LKCR-EDIGQIVMTVFYGVDPSDVRKQTGEFGIAFNKTCEGKTNEET-QKWSKALNDVGNI 151
Cdd:smart00255 80 LENAlEEGGLRVIPIFYEVIPSDVRKQPGKFRKVFKKNYLKWPEDEKeQFWKKALYAVPSK 140
|
|
| NB-ARC |
pfam00931 |
NB-ARC domain; |
191-415 |
2.19e-20 |
|
NB-ARC domain;
Pssm-ID: 395745 [Multi-domain] Cd Length: 245 Bit Score: 91.67 E-value: 2.19e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 191 IEAHLQKMQSllHLDYEDGAMIVGIYGPAGIGKTTIARALHSRLSSsfqltcfmenIRGSYN-------SGLDEYGLKLR 263
Cdd:pfam00931 1 REDMVEKVIG--KLSEKDEPGIVGIHGMGGVGKTTLAAQIFNDFDE----------VEGHFDsvawvvvSKTFTISTLQQ 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 264 --LQEQLLSKVLNHDGIRINHLGAIPERLCDQKVLIILDDVDDLQQLEALANETNWFGPGSRIIVTTEDQELLEQH-DVN 340
Cdd:pfam00931 69 tiLQNLGLSEDDWDNKEEGELARKIRRALLTKRFLLVLDDVWDEEDWDKIGIPLPDRENGCRVLLTTRSEEVAGRVgGPS 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1913122545 341 KKYHVDFPTREEACKIFCTYAFRRSF-APYGFEKLAERVTWLCSNLPLGLRVMGSTLRGKK-EDDWEGILRRLENSL 415
Cdd:pfam00931 149 DPHEVELLEPDEAWELFENKVFPKTLgECELLEDVAKEIVEKCRGLPLALKVLGGLLSCKKtVEEWKHVYDVLQSEL 225
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
615-812 |
1.26e-13 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 74.20 E-value: 1.26e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 615 LEHLWSGTQSLRNLKNMDLRGSTNLKEL-----PDLTNATNLEDLNLNSCEsLVEIPSSFSHLHKLKNLWMSYCiNLQVI 689
Cdd:COG4886 74 LLLLSLLLLSLLLLGLTDLGDLTNLTELdlsgnEELSNLTNLESLDLSGNQ-LTDLPEELANLTNLKELDLSNN-QLTDL 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 690 PAhmnlvslervTLTGCSRLRnipvisthisYLDISKTtELEYVSASIALWCRLGSLDMSYNEnfmgLTHLPMS------ 763
Cdd:COG4886 152 PE----------PLGNLTNLK----------SLDLSNN-QLTDLPEELGNLTNLKELDLSNNQ----ITDLPEPlgnltn 206
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1913122545 764 LTQLILRYSDIERIPDCIKALHQLFSLDLTGCrRLASLPELpGSLLDLE 812
Cdd:COG4886 207 LEELDLSGNQLTDLPEPLANLTNLETLDLSNN-QLTDLPEL-GNLTNLE 253
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
592-803 |
7.56e-11 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 65.34 E-value: 7.56e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 592 PSKCLPPTFNPEFLVELNMQESQLEHLWSGTQSLRNLKNMDLRGSTNLKELPDLTNATNLEDLNLNSCESLVEIPSSFSH 671
Cdd:COG4886 15 LLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGD 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 672 LHKLKNLWMSYCINLQvipahmNLVSLERVTLTGCsRLRNIPV-IS--THISYLDISKTtELEYVSASIALWCRLGSLDM 748
Cdd:COG4886 95 LTNLTELDLSGNEELS------NLTNLESLDLSGN-QLTDLPEeLAnlTNLKELDLSNN-QLTDLPEPLGNLTNLKSLDL 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1913122545 749 SYNEnfmgLTHLPMS------LTQLILRYSDIERIPDCIKALHQLFSLDLTGCrRLASLPE 803
Cdd:COG4886 167 SNNQ----LTDLPEElgnltnLKELDLSNNQITDLPEPLGNLTNLEELDLSGN-QLTDLPE 222
|
|
| TIR_2 |
pfam13676 |
TIR domain; This is a family of Toll-like receptors. |
17-103 |
4.01e-07 |
|
TIR domain; This is a family of Toll-like receptors.
Pssm-ID: 463954 [Multi-domain] Cd Length: 118 Bit Score: 49.62 E-value: 4.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 17 VFTNFHGPDvrKTFLSHLRKQFSYNGIS-MFDDQSIERSQTIVPALTGAIKESRISIVVLSKNYASSRWCLDELLEILKC 95
Cdd:pfam13676 1 VFISYAGED--RAWAEWLADALEAAGYRvWLDRWDIRPGDDWVEEIEEAIENSDRVLVVLSPNYLESPWCRAEWEAALAD 78
|
....*...
gi 1913122545 96 REDIGQIV 103
Cdd:pfam13676 79 PEGRKRLI 86
|
|
| PLN03194 |
PLN03194 |
putative disease resistance protein; Provisional |
17-156 |
1.22e-06 |
|
putative disease resistance protein; Provisional
Pssm-ID: 215626 [Multi-domain] Cd Length: 187 Bit Score: 50.20 E-value: 1.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 17 VFTNFHGPDVRKTFLSHLRKQFSYNGISMF-DDQSIERSQTIVPALTGAIKESRISIVVLSKNYASSRWCLDELLEILKC 95
Cdd:PLN03194 29 VFINHRGIDTKRTIATLLYDHLSRLNLRPFlDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELALIMES 108
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1913122545 96 REDigqiVMTVFYGVDPSDVRkqtgefgIAFNKTCEGktnEETQKWSKALNDVGNIAGEHF 156
Cdd:PLN03194 109 KKR----VIPIFCDVKPSQLR-------VVDNGTCPD---EEIRRFNWALEEAKYTVGLTF 155
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
605-740 |
3.70e-06 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 50.70 E-value: 3.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 605 LVELNMQESQLEHLWSGTQSLRNLKNMDLRGsTNLKELPDLTNATNLEDLNLNSCEsLVEIPSSfSHLHKLKNLWMSYC- 683
Cdd:COG4886 207 LEELDLSGNQLTDLPEPLANLTNLETLDLSN-NQLTDLPELGNLTNLEELDLSNNQ-LTDLPPL-ANLTNLKTLDLSNNq 283
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 684 ---INLQVIPAHMNLVSLERVTLTGCSRLRNIPVISTHISYLDISKTTELEYVSASIALW 740
Cdd:COG4886 284 ltdLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALS 343
|
|
| AAA_16 |
pfam13191 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
189-316 |
4.09e-05 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433025 [Multi-domain] Cd Length: 167 Bit Score: 45.19 E-value: 4.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 189 VGIEAHLQKMQSLLHLDYEDGAMIVGIYGPAGIGKTTIARALHSRLSSS---FQLTCFMENI-RGSYNSGLDEYGLKLRL 264
Cdd:pfam13191 3 VGREEELEQLLDALDRVRSGRPPSVLLTGEAGTGKTTLLRELLRALERDggyFLRGKCDENLpYSPLLEALTREGLLRQL 82
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1913122545 265 QEQLLSKVLNHDGIRI--------NHLGAIPERLCD-------------QKVLIILDDVD-----DLQQLEALANETN 316
Cdd:pfam13191 83 LDELESSLLEAWRAALlealapvpELPGDLAERLLDlllrlldllargeRPLVLVLDDLQwadeaSLQLLAALLRLLE 160
|
|
| LRR_3 |
pfam07725 |
Leucine Rich Repeat; This Pfam entry includes some LRRs that fail to be detected by the ... |
604-623 |
1.12e-04 |
|
Leucine Rich Repeat; This Pfam entry includes some LRRs that fail to be detected by the pfam00560 model.
Pssm-ID: 429621 [Multi-domain] Cd Length: 20 Bit Score: 40.01 E-value: 1.12e-04
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
215-335 |
1.63e-04 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 42.90 E-value: 1.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 215 IYGPAGIGKTTIARALHsRLSSSFQLTCFMENIRGSYNSGLDEYGLKLRLQEQLLSKVLNHdgirinhlgaiperlcdQK 294
Cdd:cd00009 24 LYGPPGTGKTTLARAIA-NELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKA-----------------KP 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1913122545 295 VLIILDDVDD---------LQQLEALANETNWFGPGSRIIVTTEDQELLE 335
Cdd:cd00009 86 GVLFIDEIDSlsrgaqnalLRVLETLNDLRIDRENVRVIGATNRPLLGDL 135
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
608-795 |
7.29e-04 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 42.08 E-value: 7.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 608 LNMQESQLEHLwSGTQSLRNLKNMDLRGStNLKELPDLTNATNLEDLNL--NSCESLveipSSFSHLHKLKNLWMSY-CI 684
Cdd:cd21340 7 LYLNDKNITKI-DNLSLCKNLKVLYLYDN-KITKIENLEFLTNLTHLYLqnNQIEKI----ENLENLVNLKKLYLGGnRI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 685 nlqvipahmnlvslERVT-LTGCSRLRNIpvistHISYLDISKTTELEYVSASI-ALWCRLGSLDMSYN--ENFMGLTHL 760
Cdd:cd21340 81 --------------SVVEgLENLTNLEEL-----HIENQRLPPGEKLTFDPRSLaALSNSLRVLNISGNniDSLEPLAPL 141
|
170 180 190
....*....|....*....|....*....|....*...
gi 1913122545 761 PmSLTQLILRY---SDIERIPDCIKALHQLFSLDLTGC 795
Cdd:cd21340 142 R-NLEQLDASNnqiSDLEELLDLLSSWPSLRELDLTGN 178
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
212-314 |
1.55e-03 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 40.05 E-value: 1.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 212 IVGIYGPAGIGKTTIARALHSRLSSSfqltcfmeNIRGSYNSGLDEYGLKLRLQEQLLSKVLNHDGIRINHLGAIPERLC 291
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPP--------GGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALAR 75
|
90 100
....*....|....*....|....
gi 1913122545 292 DQKV-LIILDDVDDLQQLEALANE 314
Cdd:smart00382 76 KLKPdVLILDEITSLLDAEQEALL 99
|
|
| ExeA |
COG3267 |
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, ... |
201-316 |
1.80e-03 |
|
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442498 [Multi-domain] Cd Length: 261 Bit Score: 41.31 E-value: 1.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 201 LLHLDY--EDGAMIVGIYGPAGIGKTTIARALHSRLSSSFQLTCFmenirgsYNSGLDEyglklrlqEQLLSKVLNHDGI 278
Cdd:COG3267 32 LARLEYalAQGGGFVVLTGEVGTGKTTLLRRLLERLPDDVKVAYI-------PNPQLSP--------AELLRAIADELGL 96
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1913122545 279 RINH------LGAIPERLCDQ-----KVLIILDD-----VDDLQQLEALAN-ETN 316
Cdd:COG3267 97 EPKGaskadlLRQLQEFLLELaaagrRVVLIIDEaqnlpPETLEELRLLSNlETD 151
|
|
| ATPase_2 |
pfam01637 |
ATPase domain predominantly from Archaea; This family contain a conserved P-loop motif that is ... |
199-308 |
1.85e-03 |
|
ATPase domain predominantly from Archaea; This family contain a conserved P-loop motif that is involved in binding ATP. There are eukaryote members as well as archaeal members in this family.
Pssm-ID: 376582 [Multi-domain] Cd Length: 222 Bit Score: 41.15 E-value: 1.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 199 QSLLHLDYEDGAMIVGIYGPAGIGKTTIARALHSRLSSSFQLTCFMENIRGSYNSGLDEYGLKLRLQEQLLSKVLNHDGI 278
Cdd:pfam01637 9 KELEEWAERGPNLIYVIYGPEGCGKTALLRESIENLLDLGYYVIYYDPLRRYFISKLDRFEEVRRLAEALGIAVPKAELE 88
|
90 100 110
....*....|....*....|....*....|....*...
gi 1913122545 279 RINH--------LGAIPERLcdQKVLIIlddVDDLQQL 308
Cdd:pfam01637 89 ESKLaflaiellLEALKRRG--KKIAII---IDEVQQA 121
|
|
| AAA_18 |
pfam13238 |
AAA domain; |
213-335 |
2.01e-03 |
|
AAA domain;
Pssm-ID: 433052 [Multi-domain] Cd Length: 128 Bit Score: 39.33 E-value: 2.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 213 VGIYGPAGIGKTTIARALHSRLSSSFQLTCFMENiRGSYNSGLDEYGLKLRLQEQLLSKVLNhdgiriNHLGAIPERLCD 292
Cdd:pfam13238 1 ILITGTPGVGKTTLAKELSKRLGFGDNVRDLALE-NGLVLGDDPETRESKRLDEDKLDRLLD------LLEENAALEEGG 73
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1913122545 293 qkvLIILDDVDDLQQLEalanetnWFGPGSRIIVTTEDQELLE 335
Cdd:pfam13238 74 ---NLIIDGHLAELEPE-------RAKDLVGIVLRASPEELLE 106
|
|
| NACHT |
pfam05729 |
NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in ... |
215-336 |
2.21e-03 |
|
NACHT domain; This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Pssm-ID: 428606 [Multi-domain] Cd Length: 166 Bit Score: 39.98 E-value: 2.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 215 IYGPAGIGKTTIARALHS-----RLSSSFQLTCFMEnirgsyNSGLDEYGLKLRLQEQLLSKVLNHDG-IR--INHLGAI 286
Cdd:pfam05729 5 LQGEAGSGKTTLLQKLALlwaqgKLPQGFDFVFFLP------CRELSRSGNARSLADLLFSQWPEPAApVSevWAVILEL 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1913122545 287 PERlcdqkVLIILDDVD----DLQQLEALANETNWFG--------PGSRIIVTT------EDQELLEQ 336
Cdd:pfam05729 79 PER-----LLLILDGLDelvsDLGQLDGPCPVLTLLSsllrkkllPGASLLLTVrpdalrDLRRGLEE 141
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
624-804 |
3.53e-03 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 41.37 E-value: 3.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 624 SLRNLKNMDLRGSTNLKELP-DLTNATNLEDLNLNSCESLVEIPSSFSHLHKLKNLWMSYCiNLQ-VIPAHM-NLVSLER 700
Cdd:PLN00113 162 SFSSLKVLDLGGNVLVGKIPnSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN-NLSgEIPYEIgGLTSLNH 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 701 VTLTGCSRLRNIPVI---STHISYLDISKTTELEYVSASIALWCRLGSLDMSYNEnfmglthLPMSLTQLILRYSDIEri 777
Cdd:PLN00113 241 LDLVYNNLTGPIPSSlgnLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS-------LSGEIPELVIQLQNLE-- 311
|
170 180
....*....|....*....|....*....
gi 1913122545 778 pdcikALHqLFSLDLTGC--RRLASLPEL 804
Cdd:PLN00113 312 -----ILH-LFSNNFTGKipVALTSLPRL 334
|
|
| C-JID |
pfam20160 |
C-JID domain; C-terminal jelly roll/Ig-like domain (C-JID) was defined in cryogenic electron ... |
862-985 |
3.93e-03 |
|
C-JID domain; C-terminal jelly roll/Ig-like domain (C-JID) was defined in cryogenic electron microscopy (cryoEM) structures of plant intracellular immune receptors containing Toll/interleukin-1 receptor (TIR, PF01582), nucleotide-binding (NB-ARC, PF00931) and leucine-rich repeat (LRR) domains (TIR-NLRs). Structurally, the C-JID core is represented by a beta-sandwich made up of 8 to 9 beta-strands. C-JID matches the so-called post LRR domain originally detected via a set of MEME motifs. The domain showed a strong distribution bias towards TIR-NLRs of dicotyledonous plant species despite broader taxonomic distribution of TIR-NLR in plant groups. Structure-function analyses of cryoEM structures suggest that C-JID domains play a role in substrate-recognition, such as binding to effector proteins from pathogens, and thus are involved in the initiation of signaling by TIR-NLR receptors. Presence of C-JID (or post-LRR) and its importance for the function of Arabidopsis TIR-NLR RPS4 that partners with RRS1 for effector recognition suggest that C-JID has additional functions.
Pssm-ID: 466313 Cd Length: 108 Bit Score: 38.20 E-value: 3.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 862 LPGREVPAEFDHRAKGNSLTIILngnrPSYDYTQYM----VCVVIStnqeitkirnFSSTLLCHInGYIFPDYKKVYIIG 937
Cdd:pfam20160 1 LPGSQIPEWFNHQSTGSSISIKL----PENWYNDNFlgfaVCAVGS----------LIPSLHNFL-GYIHFFLIPLVSLW 65
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1913122545 938 DVSKCRrehlFIFHTSYHLhidpsgasreIVFEFRSKFKDFDIIECGV 985
Cdd:pfam20160 66 DTSKAN----GKTPNDYGR----------IEASFEFPSDLHEIKQCGV 99
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
597-812 |
5.34e-03 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 40.99 E-value: 5.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 597 PPTFNPEFLVELNMQESQL-----EHLWSGTQSLR--NLKNMDLRGSTNLKELPdltnatNLEDLNLNSCESLVEIPSSF 669
Cdd:PLN00113 87 SAIFRLPYIQTINLSNNQLsgpipDDIFTTSSSLRylNLSNNNFTGSIPRGSIP------NLETLDLSNNMLSGEIPNDI 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 670 SHLHKLKNLWMSYCINLQVIPAHM-NLVSLERVTL-----TG-----CSRLRNIPVIstHISYLDISKTTELEyvsasIA 738
Cdd:PLN00113 161 GSFSSLKVLDLGGNVLVGKIPNSLtNLTSLEFLTLasnqlVGqipreLGQMKSLKWI--YLGYNNLSGEIPYE-----IG 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 739 LWCRLGSLDMSYNeNFMGltHLPMSLTQLilrySDIE-----------RIPDCIKALHQLFSLDLTGCRRLASLPELPGS 807
Cdd:PLN00113 234 GLTSLNHLDLVYN-NLTG--PIPSSLGNL----KNLQylflyqnklsgPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ 306
|
....*
gi 1913122545 808 LLDLE 812
Cdd:PLN00113 307 LQNLE 311
|
|
| NACHT |
COG5635 |
Predicted NTPase, NACHT family domain [Signal transduction mechanisms]; |
215-328 |
9.99e-03 |
|
Predicted NTPase, NACHT family domain [Signal transduction mechanisms];
Pssm-ID: 444362 [Multi-domain] Cd Length: 935 Bit Score: 39.79 E-value: 9.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1913122545 215 IYGPAGIGKTT----IARALHSRLSSSFQLTCFMenIRgsynsgLDEYGLKLRLQEQLLSKVLNHDGIRINHLGAIperL 290
Cdd:COG5635 185 ILGEPGSGKTTllryLALELAERYLDAEDPIPIL--IE------LRDLAEEASLEDLLAEALEKRGGEPEDALERL---L 253
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1913122545 291 CDQKVLIILDDVDDLQQLEALANETNWFG------PGSRIIVTT 328
Cdd:COG5635 254 RNGRLLLLLDGLDEVPDEADRDEVLNQLRrfleryPKARVIITS 297
|
|
| |
