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Conserved domains on  [gi|1910803882|gb|QOD97149|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Corvus moneduloides]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 2.71e-162

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 456.98  E-value: 2.71e-162
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882   1 MNPQAKLIFVTSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAVEAATKYFLVQATASTLVLFSSMTNAWY 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  81 TGQWDITQLTHPTSSLILTAAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKFPPITLLYMTSLSLNPTLLTTLAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 161 SVALGGWMGLNQTQTRKIMAFSSISHLGWMAIILIYYPKLTLLNFYLYAMMTAAVFLTLNSMKVLNLSTLMTAWTKAPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 241 STILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAVIISLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1910803882 321 INPSIAILTTLSIMLLPTSPMLTTII 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 2.71e-162

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 456.98  E-value: 2.71e-162
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882   1 MNPQAKLIFVTSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAVEAATKYFLVQATASTLVLFSSMTNAWY 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  81 TGQWDITQLTHPTSSLILTAAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKFPPITLLYMTSLSLNPTLLTTLAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 161 SVALGGWMGLNQTQTRKIMAFSSISHLGWMAIILIYYPKLTLLNFYLYAMMTAAVFLTLNSMKVLNLSTLMTAWTKAPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 241 STILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAVIISLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1910803882 321 INPSIAILTTLSIMLLPTSPMLTTII 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-281 5.01e-28

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 113.67  E-value: 5.01e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  14 LLGTTITISSNHWVMAWTGLEINTLAILPLIS-KSHHPRAVEAATKYFLVQATASTLVLF-SSMTNAwYTGQWDITQL-- 89
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIaa 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  90 ---THPTSSLILTAAISM-------KLGLVPFHFWFPEVLQGSPLITGLLLSTAMK----FPPITLLYMTSLSLNP---T 152
Cdd:COG1007   191 alaAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAAdwqL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 153 LLTTLAILSVALGGWMGLNQTQTRKIMAFSSISHLGWMAIILIYYPKLTL--LNFYL--YAMMTAAVFLTLNSMK----- 223
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSrkgge 350

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1910803882 224 VLNLSTLMTAWTKAPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAVI 281
Cdd:COG1007   351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVI 408
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 2.36e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 106.24  E-value: 2.36e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  23 SNHWVMAWTGLEINTLAILPLI-SKSHHPRAVEAATKYFLVQATASTLVLFSSMTNAWYTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  91 HPTSSLILTAAISMKLGLVPFHFWFPEVLQGSPL-ITGLLLSTAMKFPPITLLYMTSLSLNPT-----LLTTLAILSVAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 165 GGWMGLNQTQTRKIMAFSSISHLGWMAIIL----IYYPKLTLLNFYLYAMMTAAVFLTLNS-----MKVLNLSTLMTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1910803882 236 KAPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-282 3.99e-24

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 102.33  E-value: 3.99e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  14 LLGTTITISSNHWVMAWTGLEINTLAILPLIS-KSHHPRAVEAATKYFLVQATASTLVLFSSMTNAWYTGQWDITQLTH- 91
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLf 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  92 -----PTSSLILTAAISM------KLGLVPFHFWFPEVLQGSPLITGLLLSTAMK---FPPITLLYMTSLS----LNPTL 153
Cdd:TIGR01770 192 lsngmLNISLLLLGIVLIlvgllfKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYILFgfseAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 154 LTTLAILSVALGGWMGLNQTQTRKIMAFSSISHLGW--MAIILIYYPKLTLLNFYL--YAMMTAAVFLTLNSMKVLN--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYilIGLLAGTLEGIKAVLFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1910803882 227 ---LSTLMTAWTKAPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAVII 282
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIA 410
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 2.71e-162

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 456.98  E-value: 2.71e-162
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882   1 MNPQAKLIFVTSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAVEAATKYFLVQATASTLVLFSSMTNAWY 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  81 TGQWDITQLTHPTSSLILTAAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKFPPITLLYMTSLSLNPTLLTTLAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 161 SVALGGWMGLNQTQTRKIMAFSSISHLGWMAIILIYYPKLTLLNFYLYAMMTAAVFLTLNSMKVLNLSTLMTAWTKAPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 241 STILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAVIISLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1910803882 321 INPSIAILTTLSIMLLPTSPMLTTII 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-346 7.03e-129

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 372.22  E-value: 7.03e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882   1 MNPQAKLIFVTSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAVEAATKYFLVQATASTLVLFSSMTNAWY 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  81 TGQWDITQLTHPTSSLILTAAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKFPPITLLYMTSLSlNPTLLTTLAIL 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 161 SVALGGWMGLNQTQTRKIMAFSSISHLGWMAIILIYYPKLTLLNFYLYAMMTAAVFLTLNSMKVLNLSTLMTAWTKAPSL 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 241 STILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAVIISLLSLLGLFFYLRLAYCATITLPPHTTNHMKQW--HTN 318
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWrlPST 319

                         330       340
                  ....*....|....*....|....*...
gi 1910803882 319 KPINPsIAILTTLSIMLLPTSPMLTTII 346
Cdd:MTH00135  320 QLTLP-LAISTTATLMLLPLTPAILALL 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-346 3.79e-128

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 370.41  E-value: 3.79e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882   1 MNPQAKLIFVTSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAVEAATKYFLVQATASTLVLFSSMTNAWY 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  81 TGQWDITQLTHPTSSLILTAAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKFPPITLLYMTSLSLNPTLLTTLAIL 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 161 SVALGGWMGLNQTQTRKIMAFSSISHLGWMAIILIYYPKLTLLNFYLYAMMTAAVFLTLNSMKVLNLSTLMTAWTKAPSL 240
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 241 STILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAVIISLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                         330       340
                  ....*....|....*....|....*.
gi 1910803882 321 INPSIAILTTLSIMLLPTSPMLTTII 346
Cdd:MTH00070  321 TNNLLSLTIILSLMLLPITPTILNLF 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-345 2.30e-115

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 337.97  E-value: 2.30e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882   1 MNPQAKLIFVTSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAVEAATKYFLVQATASTLVLFSSMTNAWY 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  81 TGQWDITQLTHPTSSLILTAAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKFPPITLLYMTSLSLNPTLLTTLAIL 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 161 SVALGGWMGLNQTQTRKIMAFSSISHLGWMAIILIYYPKLTLLNFYLYAMMTAAVFLTLNSMKVLNLSTLMTAWTKAPSL 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 241 STILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAVIISLLSLLGLFFYLRLAYCATITLPPhTTNHMK-QWH-TN 318
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQfEN 319

                         330       340
                  ....*....|....*....|....*..
gi 1910803882 319 KPINPSIAILTTLSIMLLPTSPMLTTI 345
Cdd:MTH00105  320 TKPMTLLPTLIILSTMLLPLTPMLSIL 346
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 1.59e-94

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 284.94  E-value: 1.59e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882   1 MNPQAKLIFVTSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAVEAATKYFLVQATASTLVLFSSMTNAWY 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  81 TGQWDITQLTHPTSSLILTAAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKFPPITLLYMTSLSLNPTLLTTLAIL 160
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 161 SVALGGWMGLNQTQTRKIMAFSSISHLGWMAIILIYYPKLTLLNFYLYAMMTAAVFLTLNSMKVLNLSTLMTAWTKAPSL 240
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 241 STILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAVIISLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                         330       340
                  ....*....|....*....|....*.
gi 1910803882 321 INPSIAILTTLSIMLLPTSPMLTTII 346
Cdd:MTH00200  321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-336 2.16e-81

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 251.39  E-value: 2.16e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882   1 MNPQAKLIFVTSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAVEAATKYFLVQATASTLVLFSSMTNAWY 80
Cdd:MTH00041    1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  81 TGQWDITQLTHPTSSLILTAAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKFPPITLLYMTSLSLNPTLLTTLAIL 160
Cdd:MTH00041   81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 161 SVALGGWMGLNQTQTRKIMAFSSISHLGWMAIILIYYPKLTLLNFYLYAMMTAAVFLTLNSMKVLNLSTLMTAWTKAPSL 240
Cdd:MTH00041  161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 241 STILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAVIISLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHTNKP 320
Cdd:MTH00041  241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320

                         330
                  ....*....|....*.
gi 1910803882 321 INPSIAILTTLSIMLL 336
Cdd:MTH00041  321 ITVYGVILSILSSISI 336
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-345 3.04e-56

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 186.18  E-value: 3.04e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882   1 MNPQAKLIFVTSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAVEAATKYFLVQATASTLVLFSSMTNAWy 80
Cdd:MTH00160    2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  81 tgqwdITQLTHPTSSLILTAAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKFPPITLLYMTslsLNPTLLTTLAIL 160
Cdd:MTH00160   81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 161 SVALGGWMGLNQTQTRKIMAFSSISHLGWMAIILIYYPKLTLLNFYLYAMMTAAVFLTLNSMKVLNLSTLMTAWTKAPSL 240
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 241 STILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAVIISLLSLLGLFFYLRLAYCATITLPPHTTNHMKQwhTNKP 320
Cdd:MTH00160  233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKK--KKNK 310

                         330       340
                  ....*....|....*....|....*
gi 1910803882 321 INPSIAILTTLSIMLLPTSPMLTTI 345
Cdd:MTH00160  311 FSLILNFLSFISLFGLILSSLLFLL 335
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-275 5.35e-46

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 159.28  E-value: 5.35e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882   5 AKLIFVTSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAVEAATKYFLVQATASTLVLFSSMTNAWYTGQW 84
Cdd:MTH00144    5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  85 DitqlthptSSLILTAAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKFPPITLlyMTSLSLNPTLLTTL---AILS 161
Cdd:MTH00144   85 F--------SMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFL--LSNFLDLYWLAYLLcviSVLS 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 162 VALGGWMGLNQTQTRKIMAFSSISHLGWMAIILIYYPKLTLLNFYLYAMMTAAVFLTLNSMKVLNLSTlMTAWTKAPSLS 241
Cdd:MTH00144  155 ALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKD-LGSLKPSYKTG 233

                         250       260       270
                  ....*....|....*....|....*....|....
gi 1910803882 242 TILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDM 275
Cdd:MTH00144  234 LSIISLLLSLGGLPPFLGFCSKLLVLISSMESSP 267
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-275 2.40e-43

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 152.24  E-value: 2.40e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882   7 LIFVTSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAVEAATKYFLVQATASTLVLFSSmtnawyTGQWDI 86
Cdd:MTH00011    9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  87 TQLTHPTSSLILTAAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKFPPITLLYMTSLSLNPTLLTTLAILSVALGG 166
Cdd:MTH00011   83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 167 WMGLNQTQTRKIMAFSSISHLGWMAIILIYYPKLTLLNFYLYAMMTAAVFLTLNSMKVLNLSTLMTAWTKAPSLSTILLL 246
Cdd:MTH00011  163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                         250       260
                  ....*....|....*....|....*....
gi 1910803882 247 TLLSLAGLPPLTGFLPKWLIIQELTKQDM 275
Cdd:MTH00011  243 MLLSLGGLPPFTGFMPKLMAIETLTSNSM 271
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-270 2.64e-36

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 133.64  E-value: 2.64e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882   8 IFVTSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAVEAATKYFLVQATASTLVLFSSMTNAwytgqwdIT 87
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSF-------SN 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  88 QLTHPTSSLILTAAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKFPPITLLymTSLSLNPTLLTTLAILSVALGGW 167
Cdd:MTH00197   75 LYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGGI 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 168 MGLNQTQTRKIMAFSSISHLGWMAIILIYYPKLTLLNFYLYAMMTAAVFLTLNSMKVLNLSTLMTAWTKAPSLSTILLLT 247
Cdd:MTH00197  153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232

                         250       260
                  ....*....|....*....|...
gi 1910803882 248 LLSLAGLPPLTGFLPKWLIIQEL 270
Cdd:MTH00197  233 FLSLGGLPPLSGFFLKWLILTSL 255
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-281 5.01e-28

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 113.67  E-value: 5.01e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  14 LLGTTITISSNHWVMAWTGLEINTLAILPLIS-KSHHPRAVEAATKYFLVQATASTLVLF-SSMTNAwYTGQWDITQL-- 89
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIaa 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  90 ---THPTSSLILTAAISM-------KLGLVPFHFWFPEVLQGSPLITGLLLSTAMK----FPPITLLYMTSLSLNP---T 152
Cdd:COG1007   191 alaAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAAdwqL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 153 LLTTLAILSVALGGWMGLNQTQTRKIMAFSSISHLGWMAIILIYYPKLTL--LNFYL--YAMMTAAVFLTLNSMK----- 223
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSrkgge 350

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1910803882 224 VLNLSTLMTAWTKAPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAVI 281
Cdd:COG1007   351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVI 408
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 2.36e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 106.24  E-value: 2.36e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  23 SNHWVMAWTGLEINTLAILPLI-SKSHHPRAVEAATKYFLVQATASTLVLFSSMTNAWYTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  91 HPTSSLILTAAISMKLGLVPFHFWFPEVLQGSPL-ITGLLLSTAMKFPPITLLYMTSLSLNPT-----LLTTLAILSVAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 165 GGWMGLNQTQTRKIMAFSSISHLGWMAIIL----IYYPKLTLLNFYLYAMMTAAVFLTLNS-----MKVLNLSTLMTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1910803882 236 KAPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-267 1.30e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 102.80  E-value: 1.30e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  13 LLLGTTITISSNHWVMAWTGLEINTLAILPLI-SKSHHPRAVEAATKYFLVQATASTLVLFS-------------SMTNA 78
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  79 WYTGQWDITQLTHPTSSLILTAAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKFPPITLLYmtSLSLNPTLLTTLA 158
Cdd:MTH00196   82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 159 ILSVALGGWMGLNQTQTRKIMAFSSISHLGW----MAIILIYYPKLTLLNFYLYAMMTAAVF---LTLNSMKVLnLSTLM 231
Cdd:MTH00196  160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFvlwgIEIGSFESIQASLVYLFIYIIMSICVFsiiLALNVYKNL-IIEFS 238

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1910803882 232 TAWTKAPSLSTILLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00196  239 GLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-281 1.80e-24

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 103.75  E-value: 1.80e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  14 LLGTTITISSNHWVMAWTGLEINTLAILPLIS-KSHHPRAVEAATKYFLVQATASTLVLFSSMTNAWYTGQWDITQL--- 89
Cdd:PRK05777  113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIaka 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  90 --THPTSSLILTAAISM-------KLGLVPFHFWFPEVLQGSPLITGLLLSTAMK---FPPIT-LLYMTSLSLNPT---L 153
Cdd:PRK05777  193 laDGSGNSLLLLFGLVFllvglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAVLLrLLVVAFGGLSEDwqqV 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 154 LTTLAILSVALGGWMGLNQTQTRKIMAFSSISHLGWM--AIILIYYPKLTLLNFYL--YAMMTAAVFLTLNSMK-----V 224
Cdd:PRK05777  273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLlvGLAAGTAEGYSAVLFYLlaYLFMTLGAFGVISLLRrkggeA 352

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1910803882 225 LNLSTLMTAWTKAPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAVI 281
Cdd:PRK05777  353 ESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVI 409
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-282 3.99e-24

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 102.33  E-value: 3.99e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  14 LLGTTITISSNHWVMAWTGLEINTLAILPLIS-KSHHPRAVEAATKYFLVQATASTLVLFSSMTNAWYTGQWDITQLTH- 91
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLf 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  92 -----PTSSLILTAAISM------KLGLVPFHFWFPEVLQGSPLITGLLLSTAMK---FPPITLLYMTSLS----LNPTL 153
Cdd:TIGR01770 192 lsngmLNISLLLLGIVLIlvgllfKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYILFgfseAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 154 LTTLAILSVALGGWMGLNQTQTRKIMAFSSISHLGW--MAIILIYYPKLTLLNFYL--YAMMTAAVFLTLNSMKVLN--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYilIGLLAGTLEGIKAVLFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1910803882 227 ---LSTLMTAWTKAPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAVII 282
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIA 410
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 8-267 3.14e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 97.01  E-value: 3.14e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882   8 IFVTSLLLGTTITISSNHWVMAWTGLEINTLAILPLIS-KSHHPRAVEAATKYFLVQATASTLVLFSSMTNAWYTGQWDI 86
Cdd:MTH00199  101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  87 ----TQLTHPTSSLILTAAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKFPPITLLYMTSLSLNPTLLTtlAILSV 162
Cdd:MTH00199  181 qginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSI 258

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 163 ALGGWMGLNQTQTRKIMAFSSISHLGW----MAIILIYYPKLTLLNFYLYAMMTAAVF---LTLNSMKVLnLSTLMTAWT 235
Cdd:MTH00199  259 IYGAIGALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFsiiLSLKLTKGL-IVEVSGLSR 337

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1910803882 236 KAPSLSTILLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199  338 KNPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-282 2.51e-18

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 85.20  E-value: 2.51e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  13 LLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAVEAATKYFLVQATASTLVLFSSMTNAWYTGQWDITQLTHP 92
Cdd:COG0651   116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAR 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  93 TSSL----------ILTAAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKFPPITLLYMTSLSLNP--------TLL 154
Cdd:COG0651   196 LAELdpglllaafaLLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLTKVGVYAILRVLTLLFGadpalflgTLL 275

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 155 TTLAILSVALGGWMGLNQTQTRKIMAFSSISHLGWMAIiliyypkltLLNFYLYAMMTAAVFLTLNSM------------ 222
Cdd:COG0651   276 LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILL---------GLGLGTPLGLAGALFHLLNHAlakallflaaga 346

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1910803882 223 -----KVLNLSTLMTAWTKAPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAVII 282
Cdd:COG0651   347 ieratGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVL 411
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-267 1.49e-17

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 83.75  E-value: 1.49e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882   3 PQAKLIFVTSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAV---------EAATKYFLVQATASTLVLFS 73
Cdd:MTH00198  187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  74 SMTNAWYTGQ----WDITQLTHPTSS----------LILTAAISMKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKFPPI 139
Cdd:MTH00198  267 CALYFGFTGNegmlGTILSATLETTNielrqgslgyLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVY 346

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 140 TLLymTSLSLNPTLLTTLAILSVALGGWMGLNQTQTRKIMAFSSISHLGWMAIILIYYPKLTLLNFYLYAMM----TAAV 215
Cdd:MTH00198  347 ILL--TSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAVTylvsALAS 424

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1910803882 216 FLTL---------------------NSMKVLNLSTLMTAWTKAPSLSTILLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00198  425 FTVIctleefgtrtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
ndhB CHL00049
NADH dehydrogenase subunit 2
 7-263 3.93e-13

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 70.03  E-value: 3.93e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882   7 LIFVTSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHP-RAVEAATKYFLVQATASTLVL--FSsmtnaWYTGQ 83
Cdd:CHL00049  114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFS-----WLYGL 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  84 -------WDI------TQLTHPTSSLI----LTAAISMKLGLVPFHFWFPEVLQGSPL-----------ITGLLLSTAMk 135
Cdd:CHL00049  189 sggeielQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTpvvaflsvtskVAASALATRI- 267

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 136 fppITLLYMTSLSLNPTLLTTLAILSVALGGWMGLNQTQTRKIMAFSSISHLGWMAIILI-------YYPKLTLLNFYLY 208
Cdd:CHL00049  268 ---FDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIvgdsndgYASMITYMLFYIF 344

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1910803882 209 AMMTAAVFLTLNSMKV--LNLSTLMTAWTKAPSLSTILLLTLLSLAGLPPLTGFLPK 263
Cdd:CHL00049  345 MNLGTFACIVLFGLRTgtDNIRDYAGLYTKDPFLALSLALCLLSLGGIPPLAGFFGK 401
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 1.64e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 65.12  E-value: 1.64e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  33 LEINTLAILPLIS-KSHHPRAVEAATKYFLVQATASTLVLFS---------SMTNAWYTGQWDITQLTHPTSSL-ILTAA 101
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMSENPTVVAKIALaLFIAG 229

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 102 ISMKLGLVPFHFWFPEVLQGSPL-ITGLLLSTAMK-----FPPITLLYMTSLSLN--PTLLTTLAILSVALGGWMGLNQT 173
Cdd:PRK08376  230 LAMKSGAVPVHMWLPDAYPAAPSsISAMLLVIKQAglyalARVLFSIYGPAINLAtvGWVIIILGCLTMFVGVAMAVVQK 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 174 QTRKIMAFSSISHLGWM------AIILIYYPKLT----------LLNFYLYAMMTAAVFLT----LNSMKVLNLSTLMTA 233
Cdd:PRK08376  310 DVKRLLAYHSVSQIGYMllglgvGLAALGDPAMAsygeialaggIYHIVNHALYKALLFLTagavIYETGTRNLNELGGL 389

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1910803882 234 WTKAPSLSTILLLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376  390 ARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 1.99e-11

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 64.69  E-value: 1.99e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  50 PRAVEAATKYFLVQATASTLVLF-SSMTNAWYTGQwdiTQLTHPTSSLI-------------LTAAISMKLGLVPFHFWF 115
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLSAIALALItspslglalalvfVIAGIAFKISAVPFHQWT 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 116 PEVLQGSPLITGLLLSTAMKFPPITL---LYMTSLSLNPT----LLTTLAILSVALGGWMGLNQTQTRKIMAFSSISHLG 188
Cdd:PRK02504  234 PDVYEGSPTPVVAFLSVGSKAAGFALairLLVTAFPSFDEqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 189 WMAIILIYYPKLTLLNFYLYamMTAAVFLTLNSMKVLNLSTLMTA----------WTKAPSLSTILLLTLLSLAGLPPLT 258
Cdd:PRK02504  314 FVMIGLVAGTEAGYASMVFY--LLAYLFMNLGAFACVILFSLRTGtdqisdyaglYQKDPLLTLGLSLCLLSLGGIPPLA 391


                  ....*
gi 1910803882 259 GFLPK 263
Cdd:PRK02504  392 GFFGK 396
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-282 7.35e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 59.89  E-value: 7.35e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  33 LEINTLAILPLISKSHHPRAVEAATKYFLVQATASTLVLFS-SMTNAwYTGQWDITQLTH--PTSSLILTA------AIS 103
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLAGalAENPTVVTAfgfvllALA 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 104 MKLGLVPFHFWFPEVLQG-SPLITGLLLSTAMK----------FPPITLLYMTSLSLNpTLLTTLAILSVALGGWMGLNQ 172
Cdd:PRK08375  214 LKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKvavyaliriyFTVFGGDFRFALGLG-WLLAVLALLSMLVGSLAALGQ 292

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 173 TQTRKIMAFSSISHLGWMAIILIYYPKLTLLN--FYL--YAMMTAAVFLTLNSMKVL----NLSTLMTAWTKAPSLSTIL 244
Cdd:PRK08375  293 DDVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAAGAIEVTygtrRLSELSGLGRRMPLTAAAF 372

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1910803882 245 LLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAVII 282
Cdd:PRK08375  373 AVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVL 410
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-192 4.12e-09

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 57.78  E-value: 4.12e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  49 HPRAVEAATKYFLVQATASTLVLFSSMTNAWYTGQW--DITQLTHPTSS--------LILTAAISMKLGLVPFHFWFPEV 118
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAAPLPltaqlllfLAFFIAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 119 LQ-----GSPLITGLLLSTA----MKFPpITLLYMTSLSLNPTLLTtLAILSVALGGWMGLNQTQTRKIMAFSSISHLGW 189
Cdd:COG1008   236 HVeaptaGSVLLAGVLLKMGgyglLRFA-LPLFPEASAYFAPLLAA-LGVIGIIYGALVALAQTDLKRLIAYSSVSHMGF 313


                  ...
gi 1910803882 190 MAI 192
Cdd:COG1008   314 VLL 316
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-268 4.43e-09

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 57.64  E-value: 4.43e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  50 PRAVEAATKYFLVQATASTLVLFSSMTNAWYTG------QWDITQLTHPTSSLILTA---AISMKLGLVPFHFWFPEV-- 118
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGgtfdllELLNLPLPFGVQTWLFLAffiAFAVKVPLFPLHTWLPDAhv 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 119 ---LQGSPLITGLLLSTA----MKFpPITLLYMTSLSLNPtLLTTLAILSVALGGWMGLNQTQTRKIMAFSSISHLGWMa 191
Cdd:TIGR01972 232 eapTAGSVILAGVLLKMGtygfLRF-NLPLFPDASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFV- 308

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 192 IILIYYPKLTLLNFYLYAMM-----TAAVFLTL----NSMKVLNLSTLMTAWTKAPSLSTILLLTLLSLAGLPPLTGFLP 262
Cdd:TIGR01972 309 LLGIFSFNELGISGAVFQMIshgliTAALFLLVgvlyERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVG 388


                  ....*.
gi 1910803882 263 KWLIIQ 268
Cdd:TIGR01972 389 EFLILL 394
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-275 5.63e-08

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 54.23  E-value: 5.63e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882   2 NPQAKLIFVTSLLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHpRAVEAATKYFLVQATASTLVLFSSMTNAWYT 81
Cdd:PRK08668   96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  82 GQWDIT-------QLTHPTSSLI----LTAAISMKLGLVPFHFWFPEVLQGSPL--------------ITGLLLSTAMkF 136
Cdd:PRK08668  175 GTFDFAdisqgliNDTSTGFALIvflfLLAFGVAKAGIFPLHVWAPDAYSEAPQsfsavlsgqlsklgAYGFLLVLYV-L 253

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 137 PPITLLY----MTSLSLNPTLLTTLAILSVALGGWMGLNQTQTRKIMAFSSISHLGWmaiILIYYPKLTLLNF------- 205
Cdd:PRK08668  254 PGTKLFSefgtYRGVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGY---ILVGLGLGTSLGFagglfhv 330

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1910803882 206 YLYAMMTAAVFLTLNSM----KVLNLSTLMTAWTKAPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDM 275
Cdd:PRK08668  331 FNHALFKGLFFLIFAAViyrtGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGM 404
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-263 5.81e-08

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 54.54  E-value: 5.81e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  96 LILTAAISmKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKFPPITLL------YMTSLSLNPTLLTtLAILSVALGGWMG 169
Cdd:PRK12644  208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVarlapgFADVPVWRPTVLV-LGLATMLLGGWRA 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 170 LNQTQTRKIMAFSSISHLGWMaIILIYYPK-------LTLLnfYLYAMMTAAVFLTL----NSMKVLNLSTLMTAWTKAP 238
Cdd:PRK12644  286 LRQHDLKLILAYGTVSQLGFL-TVLVGIGTrdaalagLAML--LAHALFKAALFLVVgiidHSTGTRDIRKLSGLGRRQP 362

                         170       180
                  ....*....|....*....|....*
gi 1910803882 239 SLSTILLLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644  363 VLAVVAALAAASMAGLPPLLGFVAK 387
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-192 3.60e-07

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 51.68  E-value: 3.60e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  13 LLLGTTITISSNHWVMAWTGLEINTLAILPLISKSHHPRAVEAATKYFLVQATA------STLVLFSSMTNAWYTGQWDI 86
Cdd:PRK08676  111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  87 TQLTHPTSSL---ILTAAISM-------KLGLVPFHFWFPEVLQGSPLITGLLLSTAMKFPPIT-LLYMTSL-------S 148
Cdd:PRK08676  191 TELAAHASLLspsVLGASFLFifigflaKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYgILRLSALlrqsgaaE 270

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1910803882 149 LNPTLLTTLAILSVALGGWMGLNQTQTRKIMAFSSISHLGWMAI 192
Cdd:PRK08676  271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLL 314
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-192 9.37e-06

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 47.12  E-value: 9.37e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  50 PRAVEAATKYFLVQATASTLVLFSSMTNAWY----TGQWDITQLTHPTSS--------LILTAAISMKLGLVPFHFWFPE 117
Cdd:PRK05846  157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLLNLPLPpgvqywlfLAFFIAFAVKMPMFPLHTWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 118 VLQ-----GSPLITGLLLSTA----MKFppitllymtSLSLNP-------TLLTTLAILSVALGGWMGLNQTQTRKIMAF 181
Cdd:PRK05846  237 AHVqaptaGSVLLAGILLKMGayglLRF---------SLPLFPdashefaPIIITLGVIAIIYGALVALAQTDIKKLIAY 307

                         170
                  ....*....|.
gi 1910803882 182 SSISHLGWMAI 192
Cdd:PRK05846  308 SSISHMGFVTL 318
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 295-340 9.96e-06

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 42.24  E-value: 9.96e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1910803882 295 RLAYCATITLPPHTTNHMKQWHTNKP-INPSIAILTTLSIMLLPTSP 340
Cdd:pfam06444   5 RLSYSTTLTLFPNTNNSKMKWRFNSTkNTLLLPTLTTLSILLLPLTP 51
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 7-194 2.18e-05

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 46.30  E-value: 2.18e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882   7 LIFVTSLLLgttITISSNHWVMaWTGLEINTLAILPLISKSHH-PRAVEAATKYFLVQATASTLVLFSSMTNAWYTGQWD 85
Cdd:COG1009   118 LLFMAAMLG---LVLSDNLLLL-FVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLN 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  86 ITQL-----THPTSSLILTAAISM------KLGLVPFHFWFPEVLQGSPLITGLLLSTAM---------KFPPItllymt 145
Cdd:COG1009   194 FSELlaaapTILSSPLLTLILLLLllgafgKSAQFPLHFWLPDAMEGPTPVSALLHAATMvkagvyllaRLSPL------ 267

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1910803882 146 sLSLNPTLLTTLAILSVA---LGGWMGLNQTQTRKIMAFSSISHLGWMAIIL 194
Cdd:COG1009   268 -FALSPVWLTVVAIIGAItalFAALIALAQTDIKRVLAYSTVSQLGYMFLAL 318
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 8-192 2.60e-05

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 45.69  E-value: 2.60e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882   8 IFVTSLLLgttiTISSNHWVMAWTGLEINTLAILPLISKSHHPRAVEAATKYFLV------QATASTLVLFSS----MTN 77
Cdd:PRK06458  116 LFLFTMLL----ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIIcsvgvaFALFGTILVYANaatvMGD 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  78 AWYTGQWD--ITQLTHPTSSLILTAAISM------KLGLVPFHFWFPEVLQGSP-----LITGLLLSTA----MKFPPIT 140
Cdd:PRK06458  192 GEMAILWTelLKHASLLDPTLMKLAFVFLligfgtKVGLFPMHAWLPDAHSEAPspvsaLLSGVLLNVAlyavLRYYILI 271

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1910803882 141 LLYMTSLSLNPtLLTTLAILSVALGGWMGLNQTQTRKIMAFSSISHLGWMAI 192
Cdd:PRK06458  272 DAAIGSDFPGR-LLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-190 2.74e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 45.85  E-value: 2.74e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  55 AATKYFLVQATASTLVLFSSMTNAWYTG--QWDITQLTHPT----SSLILTAAISMKLG----LVPFHFWFPEV-LQGSP 123
Cdd:PRK06473  158 AATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLRSHTlplsTQLLLLAPILVGFGikipLVPFHTWLPDAhVEAST 237

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1910803882 124 LITGLLLSTAMKFPPITLL------YMTSLSLNPTLLTTLAILSVALGGWMGLNQTQTRKIMAFSSISHLGWM 190
Cdd:PRK06473  238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYI 310
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-192 3.43e-05

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 45.41  E-value: 3.43e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  55 AATKYFLVQATASTLVLFSSMTNAWYTGQ--WDITQLT--HPTSSLILTA------AISMKLGLVPFHFWFPEV-----L 119
Cdd:PRK12561  138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGakSYPLALELLLyagfliAFGVKLPIFPLHTWLPDAhgeasA 217

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1910803882 120 QGSPLITGLLLSTA----MKFPpITLLYMTSLSLNPtLLTTLAILSVALGGWMGLNQTQTRKIMAFSSISHLGWMAI 192
Cdd:PRK12561  218 PVSMILAGVLLKMGgyalIRFN-VQMLPDAHVYFAP-ALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLL 292
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-267 3.68e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 45.50  E-value: 3.68e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  33 LEINTLAILPLISKSHHPRAVEAATKYFLVQATASTLVLFS-----SMTNAWYTGqwDITQLTHP--------TSSLILT 99
Cdd:PRK12662  139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyAITGTLNMG--DMFLIIQDlptnraiqIGVLFIM 216

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 100 AAISMKLGLVPFHFWFPEVLQGSPLITGLLLS----TAMKFPPITLLY--------MTSLSLNpTLLTTLAILSVALGGW 167
Cdd:PRK12662  217 VGLFIKAALFPFHKWLIQAYSEAPSFISVFFSgtstKVMIYLIIRIVYdvfkanfvFTTLPFN-NVFMILAALAIVFGSV 295

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 168 MGLNQTQTRKIMAFSSISHLGWMAIILIYYPKLTLLNFYLY----AMMTAAVFLTLNSMK----VLNLSTLMTAWTKAPS 239
Cdd:PRK12662  296 LAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfgTTKLEDCLNLWKSMPK 375

                         250       260
                  ....*....|....*....|....*...
gi 1910803882 240 LSTILLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662  376 ITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-271 1.09e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 43.79  E-value: 1.09e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  33 LEINTLAILPLISKSHHPRAVEAATKYFLVQATASTLVLFSSMTNAWYTGQWDITQLTH--PTSSLILTAAISMKLGLVP 110
Cdd:PRK07234  123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 111 FHFWFPEVLQGSPLITGLLLSTAMKFPPITLLYMTSLSLNPT--LLTTLAILSVALGGWMGLNQTQTRKIMAFSSISHLG 188
Cdd:PRK07234  203 SGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLdlIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLG 282

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 189 WMAIILIYYPKLTLLnfylYAMMTAAVFLTLNSMKVLNL----STLMTAWTKAPSLSTILLLtllslAGLPPLTGFLPKW 264
Cdd:PRK07234  283 FILAAPLVGGLYALA----HGLVKSTLFLCAGALPSRNFteliSQMLGIGKWIPLTMASFSI-----AGFPLLAGFVSKV 353


                  ....*..
gi 1910803882 265 LIIQELT 271
Cdd:PRK07234  354 LTLKNLL 360
PRK12650 PRK12650
DUF4040 family protein;
87-263 1.31e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 43.88  E-value: 1.31e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  87 TQLTHPTSSLILTAAISmKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKFPPITLLYMTS--LSLNPT---LLTTLAILS 161
Cdd:PRK12650  204 PGLTTVVAVLIAVAAFT-KSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSpvFHDVAVwnwLLIIVGMIT 282

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 162 VALGGWMGLNQTQTRKIMAFSSISHLGWM-AIILIYYPkltllnfylyAMMTAAVFLTL------NSMKVL--------- 225
Cdd:PRK12650  283 ALMGAVFAVQKTDLKKLTAYSTVSQLGWIvATIGVGTP----------FALTAAVVHTLahalfkSSLFMLigvvdhqag 352

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1910803882 226 --NLSTLMTAWTKAPSLSTILLLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12650  353 trDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSK 392
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-281 1.37e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 43.48  E-value: 1.37e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  34 EINTLAILPLISKSHHPRAVEAATKYFLVQATASTLVLFSSMTNAWYTGQWDITQ-----LTHPTSSLILTAAISMKLGL 108
Cdd:PRK06277  130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGL 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 109 V------PFHFWFPEVLQGSPLITGLLLSTAMKFPPITLL--------YMTSLSLNPTLLTTLAILSVALGGWMGLNQTQ 174
Cdd:PRK06277  210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMlvifklfgGLSYFPSAQGVLIALSVLAMVFGVVMALLQTD 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 175 TRKIMAFSSISHLGWMAIILIYYPKLTLLNFYLYA----MMTAAVFL----TLNSMKVLNLSTLMTAWTKAPSLSTILLL 246
Cdd:PRK06277  290 YKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAinhvIYKSALFLgagiVSYRTKTSNLRKLGGLLPVMPVVAFMVLC 369

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1910803882 247 TLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAVI 281
Cdd:PRK06277  370 AKLAISGVPPFNGFQSKLMLAQAAMQANMPELAII 404
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
92-268 2.00e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 43.01  E-value: 2.00e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  92 PTSSLILTAAISMKLGLVPFhFWFPEVLQGSPLITGLLLSTAMK-------FPPITLLYMTSLSLNPTLLTTLAILSVAL 164
Cdd:PRK12663  207 TTIALLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVI 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 165 GGWMGLNQTQTRKIMAFSSISHLGWM--AIILIYYPKLTLLNFYLYAMMT--AAVFLTLNSMKVL----NLSTLMTAWTK 236
Cdd:PRK12663  286 GALGALAYKDIRRIAGYQVISSIGFIllGLALGTPAGINGAIFYLVHDMVvkTALFLIAGSLVRLtgyrSLQYLGGLYRK 365

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1910803882 237 APSLSTILLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12663  366 EPLFGALFLILIFAIGGLPPFSGFWGKVLLVQ 397
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 82-268 1.14e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 40.90  E-value: 1.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  82 GQWDITQLTHPTSSLILTAAISM----KLGLVPFHFWFPEVLQGSPLITGLLLSTAMKFPPITLL-----YMTSLSLNPT 152
Cdd:MTH00207  165 GHWSITNMWQTDMNNYIALSIMIaamtKSAQMPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLirfypFLSSTYWFNP 244

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 153 LLTTLAILSVALGGWMGLNQTQTRKIMAFSSISHLG-WMAIILIYYPKLTLLNFYLYAMMTAAVFLTLNSMKVL-----N 226
Cdd:MTH00207  245 ALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGvMMASLGLGMPKLALFHLITHALFKALLFVCAGSLIHShhhsqD 324

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1910803882 227 LSTLMTAWTKAPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00207  325 LRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILE 366
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 103-268 1.26e-03

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 40.45  E-value: 1.26e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 103 SMKLGLvpfHFWFPEVLQGSPLITGLLLSTAMKFPPITLLYMTS--LSLNPTLL---TTLAILSVALGGWMGLNQTQTRK 177
Cdd:MTH00020  224 SAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSplFEQAPLALiivTIVGSLTVFFAATVGLVQNDLKK 300

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 178 IMAFSSISHLGWMAIIL-IYYPKLTLLNFYLYAMMTAAVFLTLNSM-----------KVLNLSTLMtawtkaPSLSTILL 245
Cdd:MTH00020  301 VIAYSTCSQLGYMVVACgLSHYSISLFHLMNHAFFKALLFLSAGSVihalsdeqdmrKMGGLISFL------PLTYIFFL 374

                         170       180
                  ....*....|....*....|...
gi 1910803882 246 LTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00020  375 IGSLSLMGFPYLTGFYSKDLILE 397
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 1.52e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 40.58  E-value: 1.52e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  48 HHPRAVEAATKYFLVQATASTLVLFSSMTNAWYTGQWDITQLTHPTSS---------------LILTAAISmKLGLVPFH 112
Cdd:PRK12649  156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELienikghplflitliLIFIGAAA-KSAQGPFY 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 113 FWFPEVLQGSPLITGLLLSTAMKFPPITLLYMTSLSLNPT-----LLTTLAILSVALGGWMGLNQTQTRKIMAFSSISHL 187
Cdd:PRK12649  235 IWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQL 314

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 188 GWMAIILIY----YPKLTLL--NFYL--YAMMTAAVFLTL----NSMKVLNLSTLMTAWTKAPSLSTILLLTLLSLAGLP 255
Cdd:PRK12649  315 AYLMTMYGYttyhEPGLGVAaaTFHLlnHATFKACLFLVAgivaHEAATRDIRKLGGLRKEMPITFIVASIAALAMAGIP 394


                  ....*...
gi 1910803882 256 PLTGFLPK 263
Cdd:PRK12649  395 PLNGFLSK 402
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-282 1.81e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 40.29  E-value: 1.81e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  96 LILTAAISmKLGLVPFHFWFPEVLQGSPLITGLLLSTAMKFPPITLLymtsLSLNP---------TLLTTLAILSVALGG 166
Cdd:PRK12647  200 LVLGGAFT-KSAQFPFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLL----ARLNPvlggtplwqTILPLFGGLTMLTGA 274

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 167 WMGLNQTQTRKIMAFSSISHLGWMAIILIYYPKLTLLNFYLY----AMMTAAVFLTLNSMK-------VLNLSTLmtaWT 235
Cdd:PRK12647  275 LLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIIDhetgtrdITKLGGL---RR 351

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1910803882 236 KAPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAVII 282
Cdd:PRK12647  352 AMPITAAAALLAALSMAGLPPLFGFLAKELIYEALLEAPLWSLILTV 398
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 59-270 2.05e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 40.10  E-value: 2.05e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  59 YFLVQATASTLVLFSSMTNAWY-TGQWDITQLTHPTSSLILT-----AAISMKLGLVPFHFWFPEVLQGSP-----LITG 127
Cdd:PRK08667  166 FYFVMTQLSTVFLMLGIIVLFIqTGSFELSPLGASAGILSLVflllfLGFGIKAGIIPFHKWLPYAHPASPsnvsaLMSG 245

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 128 LLLSTAMkfppITLLYMTSLSLNP-----TLLTTLAILSVALGGWMGLNQTQTRKIMAFSSISHLGWMAIILIYYPKLTL 202
Cdd:PRK08667  246 VMLKVAV----YGLVRFLMDVLSPelwwgVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGIGLYVIFGV 321

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 203 LNFYLYAMMT--AAVFLTLNSMKVLNL------STLMTAWTK-----------APSLSTILLLTLLSLAGLPPLTGFLPK 263
Cdd:PRK08667  322 YGLDTLALLAlgGALFHSLNHALFKSLlfltagSVVHATGTRniekmgglvklMPYTSALFLVGAVSIAALPPFNGFASE 401


                  ....*..
gi 1910803882 264 WLIIQEL 270
Cdd:PRK08667  402 LLLYESF 408
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-195 3.87e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 39.13  E-value: 3.87e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 101 AISMKLGLVPFHFWFPEV-----LQGSPLITGLLLSTA------MKFPpitLLYMTSLSLNPTLLtTLAILSVALGGWMG 169
Cdd:MTH00226  239 AMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILLKLGgyglvrLSWP---ILPLGAQNLAPAVI-AMGIVGIVYGSFAT 314

                          90       100
                  ....*....|....*....|....*.
gi 1910803882 170 LNQTQTRKIMAFSSISHLGWMAIILI 195
Cdd:MTH00226  315 CRQIDVKRLVAYSSVAHMGLVSITLV 340
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 103-268 4.71e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 38.79  E-value: 4.71e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 103 SMKLGLvpfHFWFPEVLQGSPLITGLLLSTAMKFPPITLLYMT-----SLSLNPTLLTTLAILSVALGGWMGLNQTQTRK 177
Cdd:MTH00032  239 SAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSfplfeKAPLTLLIITIFGALTAFFAATVGLVQNDLKK 315

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 178 IMAFSSISHLGWMAIILIYYPKLTLLNFYL--YAMMTAAVFLT----LNSMKV--LNLSTLMTAWTKAPSLSTILLLTLL 249
Cdd:MTH00032  316 VIAYSTCSQLGYMVLIIGIEGSHNVGLFHLvnHAFFKALLFLSagsvIHSTTVdeQDMRKMGGLIHSIPFTYTMMLIGSF 395

                         170
                  ....*....|....*....
gi 1910803882 250 SLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00032  396 SIMGLPYLTGFYSKDLILE 414
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-268 5.86e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 38.54  E-value: 5.86e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  55 AATKYFLVQATASTLVLFSSMTNAWYTGQWD------ITQLTHPTSSLILTAAI----SMKLGLVPFHFWFPEV-LQGSP 123
Cdd:PRK07363  158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQNLSLNTQLILLTGLllgfGIKIPLVPLHTWLPDAyTEASP 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 124 LITGLLLSTAMKFPPITL------LYMTSLSLNPTLLTTLAILSVALGGWMGLNQTQTRKIMAFSSISHLGWMAIILIYY 197
Cdd:PRK07363  238 AVAILLGGVLAKLGTYGLlrfglqLFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAG 317

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 198 PKLTLLN---------------FYLYAMMTAAVflTLNSMKVLNlsTLMTAWTKAPSLSTILLLTLLSLAGLPPLTGFLP 262
Cdd:PRK07363  318 TQLSLLGavaqmishglilallFHLVGIVERKV--GTRDLDVLN--GLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVA 393


                  ....*.
gi 1910803882 263 KWLIIQ 268
Cdd:PRK07363  394 EFIVFQ 399
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
52-190 7.72e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 38.08  E-value: 7.72e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882  52 AVEAATKYFLVQATASTLVLFSSMTNAWYTGQWDITQLTHPTSSLILTAAISMKLGLV----------------PFHFWF 115
Cdd:PRK07376  171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 116 PEVLQGSPLITGLLLSTAMKFPPITLL-YMTSL-SLNPTLLTTLAI---LSVALGGWMGLNQTQTRKIMAFSSISHLGWM 190
Cdd:PRK07376  251 PDAMEGPTPISALIHAATMVAAGVFLVaRMYPVfEQFPAVMTVIAWtgaITAFLGASIALTQNDIKKGLAYSTISQLGYM 330
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 101-188 9.78e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 37.74  E-value: 9.78e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910803882 101 AISMKLGLVPFHFWFPEV-----LQGSPLITGLLLSTA----MKFpPITLLYMTSLSLNPtLLTTLAILSVALGGWMGLN 171
Cdd:MTH00204  218 SLAVKIPQIPFHIWLPQAhveapVAGSVILAGILLKLGgygfLRF-SWPLFPAASEYFAP-LIVMLSVIAVIYGSLTTCR 295

                          90
                  ....*....|....*..
gi 1910803882 172 QTQTRKIMAFSSISHLG 188
Cdd:MTH00204  296 QVDFKRLIAYSSVAHMG 312
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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