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Conserved domains on  [gi|1880065603|gb|QLW04557|]
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Mediator of plasmid stability (plasmid) [Enterobacter hormaechei]

Protein Classification

plasmid partitioning/stability family protein( domain architecture ID 10566709)

plasmid partitioning/stability family protein similar to Escherichia coli StbB that is involved in the control of plasmid partition

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Plasmid_stab_B pfam10784
Plasmid stability protein; This family is conserved in the Enterobacteriales. It is a putative ...
 4-74 1.23e-23

Plasmid stability protein; This family is conserved in the Enterobacteriales. It is a putative plasmid stability protein in that it is expressed from the operon involved in stability, but its actual function has not yet been characterized.


:

Pssm-ID: 119304  Cd Length: 72  Bit Score: 89.71  E-value: 1.23e-23
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1880065603   4 GQYSFYLHSDD-RTDITAMATISTISQPLRGDFIRTAATAGAVMYQTDARLPALIPVFFDGHLSAIRLCAVM 74
Cdd:pfam10784   1 RKISFYLHPDAvRADKRACATIDSLPQKERGRLQRAALIAGLALHQLDPRLPYLLAELLTEETSADDLVALI 72
Plasmid_stab_B super family cl11376
Plasmid stability protein; This family is conserved in the Enterobacteriales. It is a putative ...
 109-178 9.93e-18

Plasmid stability protein; This family is conserved in the Enterobacteriales. It is a putative plasmid stability protein in that it is expressed from the operon involved in stability, but its actual function has not yet been characterized.


The actual alignment was detected with superfamily member pfam10784:

Pssm-ID: 119304  Cd Length: 72  Bit Score: 74.30  E-value: 9.93e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1880065603 109 RRYTLTLQDD--RSSERVERVLTGVSSRLRGELLRNLIITGLALHTTAPELPRLLASMPVPPGTVSELQVLV 178
Cdd:pfam10784   1 RKISFYLHPDavRADKRACATIDSLPQKERGRLQRAALIAGLALHQLDPRLPYLLAELLTEETSADDLVALI 72
 
Name Accession Description Interval E-value
Plasmid_stab_B pfam10784
Plasmid stability protein; This family is conserved in the Enterobacteriales. It is a putative ...
 4-74 1.23e-23

Plasmid stability protein; This family is conserved in the Enterobacteriales. It is a putative plasmid stability protein in that it is expressed from the operon involved in stability, but its actual function has not yet been characterized.


Pssm-ID: 119304  Cd Length: 72  Bit Score: 89.71  E-value: 1.23e-23
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1880065603   4 GQYSFYLHSDD-RTDITAMATISTISQPLRGDFIRTAATAGAVMYQTDARLPALIPVFFDGHLSAIRLCAVM 74
Cdd:pfam10784   1 RKISFYLHPDAvRADKRACATIDSLPQKERGRLQRAALIAGLALHQLDPRLPYLLAELLTEETSADDLVALI 72
Plasmid_stab_B pfam10784
Plasmid stability protein; This family is conserved in the Enterobacteriales. It is a putative ...
 109-178 9.93e-18

Plasmid stability protein; This family is conserved in the Enterobacteriales. It is a putative plasmid stability protein in that it is expressed from the operon involved in stability, but its actual function has not yet been characterized.


Pssm-ID: 119304  Cd Length: 72  Bit Score: 74.30  E-value: 9.93e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1880065603 109 RRYTLTLQDD--RSSERVERVLTGVSSRLRGELLRNLIITGLALHTTAPELPRLLASMPVPPGTVSELQVLV 178
Cdd:pfam10784   1 RKISFYLHPDavRADKRACATIDSLPQKERGRLQRAALIAGLALHQLDPRLPYLLAELLTEETSADDLVALI 72
 
Name Accession Description Interval E-value
Plasmid_stab_B pfam10784
Plasmid stability protein; This family is conserved in the Enterobacteriales. It is a putative ...
 4-74 1.23e-23

Plasmid stability protein; This family is conserved in the Enterobacteriales. It is a putative plasmid stability protein in that it is expressed from the operon involved in stability, but its actual function has not yet been characterized.


Pssm-ID: 119304  Cd Length: 72  Bit Score: 89.71  E-value: 1.23e-23
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1880065603   4 GQYSFYLHSDD-RTDITAMATISTISQPLRGDFIRTAATAGAVMYQTDARLPALIPVFFDGHLSAIRLCAVM 74
Cdd:pfam10784   1 RKISFYLHPDAvRADKRACATIDSLPQKERGRLQRAALIAGLALHQLDPRLPYLLAELLTEETSADDLVALI 72
Plasmid_stab_B pfam10784
Plasmid stability protein; This family is conserved in the Enterobacteriales. It is a putative ...
 109-178 9.93e-18

Plasmid stability protein; This family is conserved in the Enterobacteriales. It is a putative plasmid stability protein in that it is expressed from the operon involved in stability, but its actual function has not yet been characterized.


Pssm-ID: 119304  Cd Length: 72  Bit Score: 74.30  E-value: 9.93e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1880065603 109 RRYTLTLQDD--RSSERVERVLTGVSSRLRGELLRNLIITGLALHTTAPELPRLLASMPVPPGTVSELQVLV 178
Cdd:pfam10784   1 RKISFYLHPDavRADKRACATIDSLPQKERGRLQRAALIAGLALHQLDPRLPYLLAELLTEETSADDLVALI 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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