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Conserved domains on  [gi|1835513776|gb|QJF15933|]
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stringent starvation protein A [Phytobacter diazotrophicus]

Protein Classification

stringent starvation protein A( domain architecture ID 11484280)

RNA polymerase-associated transcriptional activator stringent starvation protein A

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
sspA PRK09481
stringent starvation protein A; Provisional
1-211 1.16e-163

stringent starvation protein A; Provisional


:

Pssm-ID: 236537 [Multi-domain]  Cd Length: 211  Bit Score: 449.55  E-value: 1.16e-163
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835513776   1 MAVAANKRSVMTLFSGPVDIYSHQVRIVLAEKGVSFEIEHVEKDNPPQDLIDLNPNQSVPTLVDRELTLWESRIIMEYLD 80
Cdd:PRK09481    1 MAVAANKRSVMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835513776  81 ERFPHPPLMPVYPVARGESRLYMHRIEKDWYSLMEVIMSSSGAQADNARRQLREELMQIAPVFGQKPYFLSDEFSLVDCY 160
Cdd:PRK09481   81 ERFPHPPLMPVYPVARGESRLMMHRIEKDWYSLMNKIVNGSASEADAARKQLREELLAIAPVFGEKPYFMSEEFSLVDCY 160
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1835513776 161 LAPLLWRLPILGIELSGAGSKELKGYMTRVFERDSFLASLTEAEREMRLGR 211
Cdd:PRK09481  161 LAPLLWRLPVLGIELSGPGAKELKGYMTRVFERDSFLASLTEAEREMRLGR 211
 
Name Accession Description Interval E-value
sspA PRK09481
stringent starvation protein A; Provisional
1-211 1.16e-163

stringent starvation protein A; Provisional


Pssm-ID: 236537 [Multi-domain]  Cd Length: 211  Bit Score: 449.55  E-value: 1.16e-163
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835513776   1 MAVAANKRSVMTLFSGPVDIYSHQVRIVLAEKGVSFEIEHVEKDNPPQDLIDLNPNQSVPTLVDRELTLWESRIIMEYLD 80
Cdd:PRK09481    1 MAVAANKRSVMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835513776  81 ERFPHPPLMPVYPVARGESRLYMHRIEKDWYSLMEVIMSSSGAQADNARRQLREELMQIAPVFGQKPYFLSDEFSLVDCY 160
Cdd:PRK09481   81 ERFPHPPLMPVYPVARGESRLMMHRIEKDWYSLMNKIVNGSASEADAARKQLREELLAIAPVFGEKPYFMSEEFSLVDCY 160
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1835513776 161 LAPLLWRLPILGIELSGAGSKELKGYMTRVFERDSFLASLTEAEREMRLGR 211
Cdd:PRK09481  161 LAPLLWRLPVLGIELSGPGAKELKGYMTRVFERDSFLASLTEAEREMRLGR 211
GST_C_SspA cd03186
C-terminal, alpha helical domain of Stringent starvation protein A; Glutathione S-transferase ...
93-200 8.38e-56

C-terminal, alpha helical domain of Stringent starvation protein A; Glutathione S-transferase (GST) C-terminal domain family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.


Pssm-ID: 198295 [Multi-domain]  Cd Length: 108  Bit Score: 172.85  E-value: 8.38e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835513776  93 PVARGESRLYMHRIEKDWYSLMEVIM-SSSGAQADNARRQLREELMQIAPVFGQKPYFLSDEFSLVDCYLAPLLWRLPIL 171
Cdd:cd03186     1 PVSRARSRLMMHRIEQDWYPLLDTILnGRDEKEAEKARKELRESLTALAPVFAASPYFLSEEFSLVDCYLAPLLWRLPAL 80
                          90       100
                  ....*....|....*....|....*....
gi 1835513776 172 GIELSGaGSKELKGYMTRVFERDSFLASL 200
Cdd:cd03186    81 GIELPK-QAKAIKDYMERVFARDSFQASL 108
GstA COG0625
Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones];
11-208 1.62e-54

Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440390 [Multi-domain]  Cd Length: 205  Bit Score: 172.77  E-value: 1.62e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835513776  11 MTLFSGPVDIYSHQVRIVLAEKGVSFEIEHV---EKDNPPQDLIDLNPNQSVPTLVDRELTLWESRIIMEYLDERFPHPP 87
Cdd:COG0625     2 MKLYGSPPSPNSRRVRIALEEKGLPYELVPVdlaKGEQKSPEFLALNPLGKVPVLVDDGLVLTESLAILEYLAERYPEPP 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835513776  88 LMPVYPVARGESRLYMHRIEKDWYSLMEVIMS-----SSGAQADNARRQLREELMQIAPVFGQKPYFLSDEFSLVDCYLA 162
Cdd:COG0625    82 LLPADPAARARVRQWLAWADGDLHPALRNLLErlapeKDPAAIARARAELARLLAVLEARLAGGPYLAGDRFSIADIALA 161
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1835513776 163 PLLWRLPILGIELSGAgsKELKGYMTRVFERDSFLASLTEAEREMR 208
Cdd:COG0625   162 PVLRRLDRLGLDLADY--PNLAAWLARLAARPAFQRALAAAEPDLA 205
GST_N pfam02798
Glutathione S-transferase, N-terminal domain; Function: conjugation of reduced glutathione to ...
9-81 3.26e-21

Glutathione S-transferase, N-terminal domain; Function: conjugation of reduced glutathione to a variety of targets. Also included in the alignment, but not GSTs: S-crystallins from squid (similarity to GST previously noted); eukaryotic elongation factors 1-gamma (not known to have GST activity and similarity not previously recognized); HSP26 family of stress-related proteins including auxin-regulated proteins in plants and stringent starvation proteins in E. coli (not known to have GST activity and similarity not previously recognized). The glutathione molecule binds in a cleft between the N- and C-terminal domains - the catalytically important residues are proposed to reside in the N-terminal domain.


Pssm-ID: 460698 [Multi-domain]  Cd Length: 76  Bit Score: 83.12  E-value: 3.26e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1835513776   9 SVMTLFSGPVDIYSHQVRIVLAEKGVSFEIEHVEKDNPPQ---DLIDLNPNQSVPTLVDRELTLWESRIIMEYLDE 81
Cdd:pfam02798   1 MVLTLYGIRGSPRAHRIRWLLAEKGVEYEIVPLDFGAGPEkspELLKLNPLGKVPALEDGGKKLTESRAILEYIAR 76
maiA TIGR01262
maleylacetoacetate isomerase; Maleylacetoacetate isomerase is an enzyme of tyrosine and ...
22-177 4.04e-16

maleylacetoacetate isomerase; Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism. [Energy metabolism, Amino acids and amines]


Pssm-ID: 273527 [Multi-domain]  Cd Length: 210  Bit Score: 73.51  E-value: 4.04e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835513776  22 SHQVRIVLAEKGVSFEIEHV----EKDNPPQDLIDLNPNQSVPTLVDRELTLWESRIIMEYLDERFPHPPLMPVYPVARG 97
Cdd:TIGR01262  11 SYRVRIALALKGIDYEYVPVnllrDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEETYPDPPLLPADPIKRA 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835513776  98 ESRLYMHRIEKDWYSL-----MEVIMSSSGAQADNARRQLR----------EELMQiaPVFGQkpYFLSDEFSLVDCYLA 162
Cdd:TIGR01262  91 RVRALALLIACDIHPLnnlrvLQYLREKLGVEEEARNRWYQhwiskgfaalEALLQ--PHAGR--FCVGDTPTLADLCLV 166
                         170
                  ....*....|....*
gi 1835513776 163 PLLWRLPILGIELSG 177
Cdd:TIGR01262 167 PQVYNAERFGVDLTP 181
 
Name Accession Description Interval E-value
sspA PRK09481
stringent starvation protein A; Provisional
1-211 1.16e-163

stringent starvation protein A; Provisional


Pssm-ID: 236537 [Multi-domain]  Cd Length: 211  Bit Score: 449.55  E-value: 1.16e-163
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835513776   1 MAVAANKRSVMTLFSGPVDIYSHQVRIVLAEKGVSFEIEHVEKDNPPQDLIDLNPNQSVPTLVDRELTLWESRIIMEYLD 80
Cdd:PRK09481    1 MAVAANKRSVMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835513776  81 ERFPHPPLMPVYPVARGESRLYMHRIEKDWYSLMEVIMSSSGAQADNARRQLREELMQIAPVFGQKPYFLSDEFSLVDCY 160
Cdd:PRK09481   81 ERFPHPPLMPVYPVARGESRLMMHRIEKDWYSLMNKIVNGSASEADAARKQLREELLAIAPVFGEKPYFMSEEFSLVDCY 160
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1835513776 161 LAPLLWRLPILGIELSGAGSKELKGYMTRVFERDSFLASLTEAEREMRLGR 211
Cdd:PRK09481  161 LAPLLWRLPVLGIELSGPGAKELKGYMTRVFERDSFLASLTEAEREMRLGR 211
GST_C_SspA cd03186
C-terminal, alpha helical domain of Stringent starvation protein A; Glutathione S-transferase ...
93-200 8.38e-56

C-terminal, alpha helical domain of Stringent starvation protein A; Glutathione S-transferase (GST) C-terminal domain family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.


Pssm-ID: 198295 [Multi-domain]  Cd Length: 108  Bit Score: 172.85  E-value: 8.38e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835513776  93 PVARGESRLYMHRIEKDWYSLMEVIM-SSSGAQADNARRQLREELMQIAPVFGQKPYFLSDEFSLVDCYLAPLLWRLPIL 171
Cdd:cd03186     1 PVSRARSRLMMHRIEQDWYPLLDTILnGRDEKEAEKARKELRESLTALAPVFAASPYFLSEEFSLVDCYLAPLLWRLPAL 80
                          90       100
                  ....*....|....*....|....*....
gi 1835513776 172 GIELSGaGSKELKGYMTRVFERDSFLASL 200
Cdd:cd03186    81 GIELPK-QAKAIKDYMERVFARDSFQASL 108
GstA COG0625
Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones];
11-208 1.62e-54

Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440390 [Multi-domain]  Cd Length: 205  Bit Score: 172.77  E-value: 1.62e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835513776  11 MTLFSGPVDIYSHQVRIVLAEKGVSFEIEHV---EKDNPPQDLIDLNPNQSVPTLVDRELTLWESRIIMEYLDERFPHPP 87
Cdd:COG0625     2 MKLYGSPPSPNSRRVRIALEEKGLPYELVPVdlaKGEQKSPEFLALNPLGKVPVLVDDGLVLTESLAILEYLAERYPEPP 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835513776  88 LMPVYPVARGESRLYMHRIEKDWYSLMEVIMS-----SSGAQADNARRQLREELMQIAPVFGQKPYFLSDEFSLVDCYLA 162
Cdd:COG0625    82 LLPADPAARARVRQWLAWADGDLHPALRNLLErlapeKDPAAIARARAELARLLAVLEARLAGGPYLAGDRFSIADIALA 161
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1835513776 163 PLLWRLPILGIELSGAgsKELKGYMTRVFERDSFLASLTEAEREMR 208
Cdd:COG0625   162 PVLRRLDRLGLDLADY--PNLAAWLARLAARPAFQRALAAAEPDLA 205
GST_N_SspA cd03059
GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP) ...
11-83 4.02e-42

GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.


Pssm-ID: 239357 [Multi-domain]  Cd Length: 73  Bit Score: 136.69  E-value: 4.02e-42
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1835513776  11 MTLFSGPVDIYSHQVRIVLAEKGVSFEIEHVEKDNPPQDLIDLNPNQSVPTLVDRELTLWESRIIMEYLDERF 83
Cdd:cd03059     1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLDERF 73
GST_N pfam02798
Glutathione S-transferase, N-terminal domain; Function: conjugation of reduced glutathione to ...
9-81 3.26e-21

Glutathione S-transferase, N-terminal domain; Function: conjugation of reduced glutathione to a variety of targets. Also included in the alignment, but not GSTs: S-crystallins from squid (similarity to GST previously noted); eukaryotic elongation factors 1-gamma (not known to have GST activity and similarity not previously recognized); HSP26 family of stress-related proteins including auxin-regulated proteins in plants and stringent starvation proteins in E. coli (not known to have GST activity and similarity not previously recognized). The glutathione molecule binds in a cleft between the N- and C-terminal domains - the catalytically important residues are proposed to reside in the N-terminal domain.


Pssm-ID: 460698 [Multi-domain]  Cd Length: 76  Bit Score: 83.12  E-value: 3.26e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1835513776   9 SVMTLFSGPVDIYSHQVRIVLAEKGVSFEIEHVEKDNPPQ---DLIDLNPNQSVPTLVDRELTLWESRIIMEYLDE 81
Cdd:pfam02798   1 MVLTLYGIRGSPRAHRIRWLLAEKGVEYEIVPLDFGAGPEkspELLKLNPLGKVPALEDGGKKLTESRAILEYIAR 76
GST_N_family cd00570
Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic ...
11-80 4.55e-19

Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Based on sequence similarity, different classes of GSTs have been identified, which display varying tissue distribution, substrate specificities and additional specific activities. In humans, GSTs display polymorphisms which may influence individual susceptibility to diseases such as cancer, arthritis, allergy and sclerosis. Some GST family members with non-GST functions include glutaredoxin 2, the CLIC subfamily of anion channels, prion protein Ure2p, crystallins, metaxin 2 and stringent starvation protein A.


Pssm-ID: 238319 [Multi-domain]  Cd Length: 71  Bit Score: 77.61  E-value: 4.55e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1835513776  11 MTLFSGPVDIYSHQVRIVLAEKGVSFEIEHVEKDNPPQ-DLIDLNPNQSVPTLVDRELTLWESRIIMEYLD 80
Cdd:cd00570     1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQeEFLALNPLGKVPVLEDGGLVLTESLAILEYLA 71
GST_C pfam00043
Glutathione S-transferase, C-terminal domain; GST conjugates reduced glutathione to a variety ...
101-194 3.66e-16

Glutathione S-transferase, C-terminal domain; GST conjugates reduced glutathione to a variety of targets including S-crystallin from squid, the eukaryotic elongation factor 1-gamma, the HSP26 family of stress-related proteins and auxin-regulated proteins in plants. Stringent starvation proteins in E. coli are also included in the alignment but are not known to have GST activity. The glutathione molecule binds in a cleft between N and C-terminal domains. The catalytically important residues are proposed to reside in the N-terminal domain. In plants, GSTs are encoded by a large gene family (48 GST genes in Arabidopsis) and can be divided into the phi, tau, theta, zeta, and lambda classes.


Pssm-ID: 459647 [Multi-domain]  Cd Length: 93  Bit Score: 70.78  E-value: 3.66e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835513776 101 LYMHRIEKDWYSLMEVImSSSGAQADNARRQLREELMQIAPVFGQKPYFLSDEFSLVDCYLAPLLWRLPILGIELSGAGS 180
Cdd:pfam00043   1 LMDLRMQIALLPYVPPE-EKKEPEVDEALEKVARVLSALEEVLKGQTYLVGDKLTLADIALAPALLWLYELDPACLREKF 79
                          90
                  ....*....|....
gi 1835513776 181 KELKGYMTRVFERD 194
Cdd:pfam00043  80 PNLKAWFERVAARP 93
maiA TIGR01262
maleylacetoacetate isomerase; Maleylacetoacetate isomerase is an enzyme of tyrosine and ...
22-177 4.04e-16

maleylacetoacetate isomerase; Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism. [Energy metabolism, Amino acids and amines]


Pssm-ID: 273527 [Multi-domain]  Cd Length: 210  Bit Score: 73.51  E-value: 4.04e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835513776  22 SHQVRIVLAEKGVSFEIEHV----EKDNPPQDLIDLNPNQSVPTLVDRELTLWESRIIMEYLDERFPHPPLMPVYPVARG 97
Cdd:TIGR01262  11 SYRVRIALALKGIDYEYVPVnllrDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEETYPDPPLLPADPIKRA 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835513776  98 ESRLYMHRIEKDWYSL-----MEVIMSSSGAQADNARRQLR----------EELMQiaPVFGQkpYFLSDEFSLVDCYLA 162
Cdd:TIGR01262  91 RVRALALLIACDIHPLnnlrvLQYLREKLGVEEEARNRWYQhwiskgfaalEALLQ--PHAGR--FCVGDTPTLADLCLV 166
                         170
                  ....*....|....*
gi 1835513776 163 PLLWRLPILGIELSG 177
Cdd:TIGR01262 167 PQVYNAERFGVDLTP 181
GST_N_2 pfam13409
Glutathione S-transferase, N-terminal domain; This family is closely related to pfam02798.
21-82 2.60e-15

Glutathione S-transferase, N-terminal domain; This family is closely related to pfam02798.


Pssm-ID: 433184 [Multi-domain]  Cd Length: 68  Bit Score: 67.66  E-value: 2.60e-15
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1835513776  21 YSHQVRIVLAEKGVSFEIEHVEKD--NPPQDLIDLNPNQSVPTLVDRE-LTLWESRIIMEYLDER 82
Cdd:pfam13409   4 FSHRVRLALEEKGLPYEIELVDLDpkDKPPELLALNPLGTVPVLVLPDgTVLTDSLVILEYLEEL 68
GST_N_3 pfam13417
Glutathione S-transferase, N-terminal domain;
13-87 1.99e-13

Glutathione S-transferase, N-terminal domain;


Pssm-ID: 433190 [Multi-domain]  Cd Length: 75  Bit Score: 63.02  E-value: 1.99e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1835513776  13 LFSGPVDIYSHQVRIVLAEKGVSFEIEHVEKDNPPQDLIDLNPNQSVPTLVDRELTLWESRIIMEYLDERFPHPP 87
Cdd:pfam13417   1 LYGFPGSPYARRVRIALNEKGLPYEFVPIPPGDHPPELLAKNPLGKVPVLEDDGGILCESLAIIDYLEELYPGPP 75
GST_N_Phi cd03053
GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related ...
10-82 4.66e-13

GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including transport of flavonoid pigments to the vacuole, shoot regeneration and GSH peroxidase activity.


Pssm-ID: 239351 [Multi-domain]  Cd Length: 76  Bit Score: 61.90  E-value: 4.66e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1835513776  10 VMTLFSGPVDIYSHQVRIVLAEKGVSFEIEHVE---KDNPPQDLIDLNPNQSVPTLVDRELTLWESRIIMEYLDER 82
Cdd:cd03053     1 VLKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDltkGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLAEK 76
PRK15113 PRK15113
glutathione transferase;
21-195 7.06e-13

glutathione transferase;


Pssm-ID: 185068 [Multi-domain]  Cd Length: 214  Bit Score: 64.98  E-value: 7.06e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835513776  21 YSHQVRIVLAEKGVSFEIEHV---EKDNPPQDLIDLNPNQSVPTLVDRELTLWESRIIMEYLDERFPHPPLMPVYPV--- 94
Cdd:PRK15113   18 YVMSAFVALQEKGLPFELKTVdldAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLEERFAPPAWERIYPAdlq 97
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835513776  95 ARGESRLYMHRIEKDwysLM--------EVIMS-------SSGAQADNARrqlreeLMQIAP-VFGQKPYFLSDEFSLVD 158
Cdd:PRK15113   98 ARARARQIQAWLRSD---LMplreerptDVVFAgakkaplSEAGKAAAEK------LFAVAErLLAPGQPNLFGEWCIAD 168
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1835513776 159 CYLAPLLWRLPILGIELSGAgskeLKGYMTRVFERDS 195
Cdd:PRK15113  169 TDLALMLNRLVLHGDEVPER----LADYATFQWQRAS 201
PLN02817 PLN02817
glutathione dehydrogenase (ascorbate)
21-204 1.98e-10

glutathione dehydrogenase (ascorbate)


Pssm-ID: 166458 [Multi-domain]  Cd Length: 265  Bit Score: 58.85  E-value: 1.98e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835513776  21 YSHQVRIVLAEKGVSFEIEHVEKDNPPQDLIDLNPNQSVPTLVDRELTLWESRIIMEYLDERFPHPPLMPVYPVARGESR 100
Cdd:PLN02817   75 FCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPEGKVPVVKLDEKWVADSDVITQALEEKYPDPPLATPPEKASVGSK 154
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835513776 101 LYMHRIEkdwyslmeviMSSSGAQADNARRQLREELMQIAPVFGQK-PYFLSDEFSLVDCYLAPLLWRLPI-LGIELSGA 178
Cdd:PLN02817  155 IFSTFIG----------FLKSKDPGDGTEQALLDELTSFDDYIKENgPFINGEKISAADLSLGPKLYHLEIaLGHYKNWS 224
                         170       180
                  ....*....|....*....|....*....
gi 1835513776 179 GSKEL---KGYMTRVFERDSFLASLTEAE 204
Cdd:PLN02817  225 VPDSLpfvKSYMKNIFSMESFVKTRALPE 253
GST_N_3 cd03049
GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with ...
11-80 2.07e-10

GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.


Pssm-ID: 239347 [Multi-domain]  Cd Length: 73  Bit Score: 54.96  E-value: 2.07e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1835513776  11 MTLFSGPVDIYSHQVRIVLAEKG--VSFEIEHVEKDNPPQDLIDLNPNQSVPTLV-DRELTLWESRIIMEYLD 80
Cdd:cd03049     1 MKLLYSPTSPYVRKVRVAAHETGlgDDVELVLVNPWSDDESLLAVNPLGKIPALVlDDGEALFDSRVICEYLD 73
PRK10542 PRK10542
glutathionine S-transferase; Provisional
11-200 2.18e-10

glutathionine S-transferase; Provisional


Pssm-ID: 182533 [Multi-domain]  Cd Length: 201  Bit Score: 57.77  E-value: 2.18e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835513776  11 MTLF--SGPVDIYSHqvrIVLAEKGVSFEIEHVE----KDNPPQDLIDLNPNQSVPTLV-DRELTLWESRIIMEYLDERF 83
Cdd:PRK10542    1 MKLFykPGACSLASH---ITLRESGLDFTLVSVDlakkRLENGDDYLAINPKGQVPALLlDDGTLLTEGVAIMQYLADSV 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835513776  84 PHPPLM-PVYPVARgesrlyMHRIEkdW--YSLMEVIMSSS----GAQADN----ARRQLREELMQIAPVFGQKPYFLSD 152
Cdd:PRK10542   78 PDRQLLaPVGSLSR------YHTIE--WlnYIATELHKGFTplfrPDTPEEykptVRAQLEKKFQYVDEALADEQWICGQ 149
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1835513776 153 EFSLVDCYLAPLLWRLPILGIELSGAGskELKGYMTRVFERDSFLASL 200
Cdd:PRK10542  150 RFTIADAYLFTVLRWAYAVKLNLEGLE--HIAAYMQRVAERPAVAAAL 195
GST_N_Ure2p_like cd03048
GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related ...
17-84 1.71e-09

GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and Schizosaccharomyces pombe GST-I. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes.


Pssm-ID: 239346 [Multi-domain]  Cd Length: 81  Bit Score: 52.55  E-value: 1.71e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835513776  17 PVDIYSHQ------VRIVLAEKGVSFEIEHV---EKDNPPQDLIDLNPNQSVPTLVDRE---LTLWESRIIMEYLDERFP 84
Cdd:cd03048     1 MITLYTHGtpngfkVSIMLEELGLPYEIHPVdisKGEQKKPEFLKINPNGRIPAIVDHNgtpLTVFESGAILLYLAEKYD 80
GST_N_GTT1_like cd03046
GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly ...
22-84 3.60e-09

GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pombe GST-III is implicated in the detoxification of various metals.


Pssm-ID: 239344 [Multi-domain]  Cd Length: 76  Bit Score: 51.73  E-value: 3.60e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1835513776  22 SHQVRIVLAEKGVSFEIEHVEKDNP---PQDLIDLNPNQSVPTLVDRELTLWESRIIMEYLDERFP 84
Cdd:cd03046    11 SFRILWLLEELGLPYELVLYDRGPGeqaPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLAEKYG 76
PLN02378 PLN02378
glutathione S-transferase DHAR1
21-202 5.58e-09

glutathione S-transferase DHAR1


Pssm-ID: 166019 [Multi-domain]  Cd Length: 213  Bit Score: 53.95  E-value: 5.58e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835513776  21 YSHQVRIVLAEKGVSFEIEHVEKDNPPQDLIDLNPNQSVPTLVDRELTLWESRIIMEYLDERFPHPPLMPVYPVARGESR 100
Cdd:PLN02378   22 FSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDPPLKTPAEFASVGSN 101
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835513776 101 LymhriekdwYSLMEVIMSSSGAQaDNARRQLREELMQIAPVFGQK--PYFLSDEFSLVDCYLAPLLWRLPILGIELSGA 178
Cdd:PLN02378  102 I---------FGTFGTFLKSKDSN-DGSEHALLVELEALENHLKSHdgPFIAGERVSAVDLSLAPKLYHLQVALGHFKSW 171
                         170       180
                  ....*....|....*....|....*...
gi 1835513776 179 GSKE----LKGYMTRVFERDSFLASLTE 202
Cdd:PLN02378  172 SVPEsfphVHNYMKTLFSLDSFEKTKTE 199
GST_N_Zeta cd03042
GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular ...
22-80 2.44e-08

GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.


Pssm-ID: 239340 [Multi-domain]  Cd Length: 73  Bit Score: 49.11  E-value: 2.44e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1835513776  22 SHQVRIVLAEKGVSFEIEhvekdnpPQDLID----------LNPNQSVPTLVDRELTLWESRIIMEYLD 80
Cdd:cd03042    12 SYRVRIALNLKGLDYEYV-------PVNLLKgeqlspayraLNPQGLVPTLVIDGLVLTQSLAIIEYLD 73
GST_N_Delta_Epsilon cd03045
GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved ...
11-79 4.02e-08

GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.


Pssm-ID: 239343 [Multi-domain]  Cd Length: 74  Bit Score: 48.76  E-value: 4.02e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1835513776  11 MTLFSGPVDIYSHQVRIVLAEKGVSFEIEHV---EKDNPPQDLIDLNPNQSVPTLVDRELTLWESRIIMEYL 79
Cdd:cd03045     1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVnlmKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYL 72
GST_N_4 cd03056
GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with ...
11-79 5.80e-08

GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.


Pssm-ID: 239354 [Multi-domain]  Cd Length: 73  Bit Score: 48.34  E-value: 5.80e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1835513776  11 MTLFSGPVDIYSHQVRIVLAEKGVSFEIEHVEKDN---PPQDLIDLNPNQSVPTLVDRELTLWESRIIMEYL 79
Cdd:cd03056     1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKgetRTPEFLALNPNGEVPVLELDGRVLAESNAILVYL 72
GST_N_Tau cd03058
GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular ...
21-83 6.64e-08

GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin, responses to soil stresses and responses to auxin and cytokinin hormones.


Pssm-ID: 239356 [Multi-domain]  Cd Length: 74  Bit Score: 48.04  E-value: 6.64e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1835513776  21 YSHQVRIVLAEKGVSFeiEHVEKD--NPPQDLIDLNP-NQSVPTLVDRELTLWESRIIMEYLDERF 83
Cdd:cd03058    11 FVLRVRIALALKGVPY--EYVEEDlgNKSELLLASNPvHKKIPVLLHNGKPICESLIIVEYIDEAW 74
PRK10357 PRK10357
putative glutathione S-transferase; Provisional
21-138 9.74e-08

putative glutathione S-transferase; Provisional


Pssm-ID: 182405 [Multi-domain]  Cd Length: 202  Bit Score: 50.49  E-value: 9.74e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835513776  21 YSHQVRIVLAEKGVSFEIEHVEKDNPPQDLIDLNPNQSVPTLVDRELTLW-ESRIIMEYLDERFPHPPLMPVYPVArges 99
Cdd:PRK10357   11 FVRKISILLLEKGITFEFVNELPYNADNGVAQYNPLGKVPALVTEEGECWfDSPIIAEYIELLNVAPAMLPRDPLA---- 86
                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1835513776 100 RLYMHRIEKDWYSLMEVIMSSSGAQADNARRQLREELMQ 138
Cdd:PRK10357   87 ALRVRQLEALADGIMDAALVSVREQARPAAQQSEDELLR 125
GST_C_family cd00299
C-terminal, alpha helical domain of the Glutathione S-transferase family; Glutathione ...
110-190 5.91e-07

C-terminal, alpha helical domain of the Glutathione S-transferase family; Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Based on sequence similarity, different classes of GSTs have been identified, which display varying tissue distribution, substrate specificities and additional specific activities. In humans, GSTs display polymorphisms which may influence individual susceptibility to diseases such as cancer, arthritis, allergy and sclerosis. Some GST family members with non-GST functions include glutaredoxin 2, the CLIC subfamily of anion channels, prion protein Ure2p, crystallins, metaxins, stringent starvation protein A, and aminoacyl-tRNA synthetases.


Pssm-ID: 198286 [Multi-domain]  Cd Length: 100  Bit Score: 46.34  E-value: 5.91e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835513776 110 WYSLMEVIMSSSGAQADNARRQLREELMQIAPVFGQKPYFLSDEFSLVDCYLAPLLWRLPILG-IELSGAGSKELKGYMT 188
Cdd:cd00299    19 LLYLEKVPLPKDEAAVEAAREELPALLAALEQLLAGRPYLAGDQFSLADVALAPVLARLEALGpYYDLLDEYPRLKAWYD 98

                  ..
gi 1835513776 189 RV 190
Cdd:cd00299    99 RL 100
GST_N_Beta cd03057
GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular ...
25-84 1.04e-06

GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.


Pssm-ID: 239355 [Multi-domain]  Cd Length: 77  Bit Score: 44.84  E-value: 1.04e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1835513776  25 VRIVLAEKGVSFEIEHVEKDNPPQ---DLIDLNPNQSVPTLV-DRELTLWESRIIMEYLDERFP 84
Cdd:cd03057    14 PHIALEELGLPFELVRVDLRTKTQkgaDYLAINPKGQVPALVlDDGEVLTESAAILQYLADLHP 77
GST_N_Omega cd03055
GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular ...
21-80 1.94e-06

GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega GST genes may be associated with the development of some types of cancer and the age-at-onset of both Alzheimer's and Parkinson's diseases.


Pssm-ID: 239353 [Multi-domain]  Cd Length: 89  Bit Score: 44.65  E-value: 1.94e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1835513776  21 YSHQVRIVLAEKGVSFEIEHVEKDNPPQDLIDLNPNQSVPTL-VDRELTLWESRIIMEYLD 80
Cdd:cd03055    29 YAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQGKVPALeIDEGKVVYESLIICEYLD 89
PLN02395 PLN02395
glutathione S-transferase
16-83 2.59e-06

glutathione S-transferase


Pssm-ID: 166036 [Multi-domain]  Cd Length: 215  Bit Score: 46.40  E-value: 2.59e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1835513776  16 GPVDIYSHQVRIVLAEKGVSFE---IEHVEKDNPPQDLIDLNPNQSVPTLVDRELTLWESRIIMEYLDERF 83
Cdd:PLN02395    7 GPAFASPKRALVTLIEKGVEFEtvpVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYAEKY 77
GST_N_2 cd03047
GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with ...
22-79 3.52e-06

GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.


Pssm-ID: 239345 [Multi-domain]  Cd Length: 73  Bit Score: 43.46  E-value: 3.52e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1835513776  22 SHQVRIVL---AEKGVSFEIEHVEKD---NPPQDLIDLNPNQSVPTLVDRELTLWESRIIMEYL 79
Cdd:cd03047     9 SINVQKVLwllDELGLPYERIDAGGQfggLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRYL 72
GST_N_GTT2_like cd03051
GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly ...
11-80 8.57e-06

GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.


Pssm-ID: 239349 [Multi-domain]  Cd Length: 74  Bit Score: 42.28  E-value: 8.57e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1835513776  11 MTLFSGPVDIYSHQVRIVLAEKGVSFEIEHV---EKDNPPQDLIDLNPNQSVPTLV-DRELTLWESRIIMEYLD 80
Cdd:cd03051     1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVdlaAGEQRSPEFLAKNPAGTVPVLElDDGTVITESVAICRYLE 74
GST_C_2 pfam13410
Glutathione S-transferase, C-terminal domain; This domain is closely related to pfam00043.
124-168 1.02e-05

Glutathione S-transferase, C-terminal domain; This domain is closely related to pfam00043.


Pssm-ID: 433185 [Multi-domain]  Cd Length: 67  Bit Score: 41.92  E-value: 1.02e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1835513776 124 QADNARRQLREELMQIAPVFGQKPYFLSDEFSLVDCYLAPLLWRL 168
Cdd:pfam13410   1 ALERAREQLRAALDALEARLADGPGLLGDRPTLADIALAPVLARL 45
GST_C_Beta cd03188
C-terminal, alpha helical domain of Class Beta Glutathione S-transferases; Glutathione ...
122-200 8.54e-05

C-terminal, alpha helical domain of Class Beta Glutathione S-transferases; Glutathione S-transferase (GST) C-terminal domain family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they are involved in the protection against oxidative stress and are able to bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs, contributing to antibiotic resistance. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH. One member of this subfamily is a GST from Burkholderia xenovorans LB400 that is encoded by the bphK gene and is part of the biphenyl catabolic pathway.


Pssm-ID: 198297 [Multi-domain]  Cd Length: 113  Bit Score: 40.69  E-value: 8.54e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1835513776 122 GAQADNARRQLREELM----QIAPVFGQKPYFLSDEFSLVDCYLAPLL-WrLPILGIELSGAGSkeLKGYMTRVFERDSF 196
Cdd:cd03188    33 DALAEEVKAAARERLErrlaYLDAQLAGGPYLLGDQFSVADAYLFVVLrW-ARAVGLDLSDWPH--LAAYLARVAARPAV 109

                  ....
gi 1835513776 197 LASL 200
Cdd:cd03188   110 QAAL 113
GST_N_1 cd03043
GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from ...
27-79 1.18e-04

GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.


Pssm-ID: 239341 [Multi-domain]  Cd Length: 73  Bit Score: 39.12  E-value: 1.18e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1835513776  27 IVLAEKGVSFEIEHVEKDNP--PQDLIDLNPNQSVPTLVDRELTLWESRIIMEYL 79
Cdd:cd03043    18 LLLKAAGIPFEEILVPLYTPdtRARILEFSPTGKVPVLVDGGIVVWDSLAICEYL 72
PRK11752 PRK11752
putative S-transferase; Provisional
49-98 3.33e-04

putative S-transferase; Provisional


Pssm-ID: 183298 [Multi-domain]  Cd Length: 264  Bit Score: 40.30  E-value: 3.33e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1835513776  49 DLIDLNPNQSVPTLVDR----ELTLWESRIIMEYLDERFPHppLMPVYPVARGE 98
Cdd:PRK11752   91 GFVEINPNSKIPALLDRsgnpPIRVFESGAILLYLAEKFGA--FLPKDLAARTE 142
PLN02473 PLN02473
glutathione S-transferase
23-83 4.39e-04

glutathione S-transferase


Pssm-ID: 166114 [Multi-domain]  Cd Length: 214  Bit Score: 39.97  E-value: 4.39e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1835513776  23 HQVRIVLAEKGVSFEIEHVEKDN----PPQDLIDlNPNQSVPTLVDRELTLWESRIIMEYLDERF 83
Cdd:PLN02473   15 QRVLLCFLEKGIEFEVIHVDLDKleqkKPEHLLR-QPFGQVPAIEDGDLKLFESRAIARYYATKY 78
GST_N_etherase_LigE cd03038
GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas ...
25-84 7.18e-04

GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.


Pssm-ID: 239336 [Multi-domain]  Cd Length: 84  Bit Score: 37.33  E-value: 7.18e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1835513776  25 VRIVLAEKGVSFEIEHVE-KDNPP-QDLIDLNPNQSVPTLVDR-ELTLWESRIIMEYLDERFP 84
Cdd:cd03038    22 TRLALNHKGLEYKTVPVEfPDIPPiLGELTSGGFYTVPVIVDGsGEVIGDSFAIAEYLEEAYP 84
GST_N_Theta cd03050
GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial ...
13-83 9.24e-04

GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DCM as sole carbon and energy sources. The presence of polymorphisms in human GSTT1-1 and its relationship to the onset of diseases including cancer is subject of many studies. Human GSTT2-2 exhibits a highly specific sulfatase activity, catalyzing the cleavage of sulfate ions from aralkyl sufate esters, but not from aryl or alkyl sulfate esters.


Pssm-ID: 239348 [Multi-domain]  Cd Length: 76  Bit Score: 36.84  E-value: 9.24e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1835513776  13 LFSGPvdiySHQVRIVLAEKGVSFEIEHV---EKDNPPQDLIDLNPNQSVPTLVDRELTLWESRIIMEYLDERF 83
Cdd:cd03050     7 LMSQP----SRAVYIFLKLNKIPFEECPIdlrKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLARKF 76
NrdH cd02976
NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active ...
12-63 1.43e-03

NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, could be a mechanism for regulating the oxidation state of the protein.


Pssm-ID: 239274 [Multi-domain]  Cd Length: 73  Bit Score: 36.05  E-value: 1.43e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1835513776  12 TLFSGPVDIYSHQVRIVLAEKGVSFEIEHVEKDnpPQ---DLIDLNPNQSVPTLV 63
Cdd:cd02976     3 TVYTKPDCPYCKATKRFLDERGIPFEEVDVDED--PEaleELKKLNGYRSVPVVV 55
TRX_superfamily cd01659
Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many ...
11-64 1.55e-03

Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.


Pssm-ID: 238829 [Multi-domain]  Cd Length: 69  Bit Score: 36.14  E-value: 1.55e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1835513776  11 MTLFSGPVDIYSHQVRIVLAE-----KGVSFEIEHVEKDNPPQDLIDLNPNQSVPTLVD 64
Cdd:cd01659     1 LVLFYAPWCPFCQALRPVLAElallnKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVV 59
GST_C_GDAP1 cd10303
C-terminal, alpha helical domain of Ganglioside-induced differentiation-associated protein 1; ...
141-196 2.16e-03

C-terminal, alpha helical domain of Ganglioside-induced differentiation-associated protein 1; Glutathione S-transferase (GST) C-terminal domain family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.


Pssm-ID: 198336 [Multi-domain]  Cd Length: 111  Bit Score: 36.53  E-value: 2.16e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1835513776 141 PVFGQKPYFLSDEFSLVDCYLAPLLWRLPILGIELS--GAGSK-ELKGYMTRVFERDSF 196
Cdd:cd10303    53 PEEGQQPWLCGEFFSLADVSLAVTLHRLKFLGLARRnwGNGKRpNLETYYERVLKRKTF 111
GST_C_GDAP1_like cd03204
C-terminal, alpha helical domain of Ganglioside-induced differentiation-associated protein ...
131-196 7.46e-03

C-terminal, alpha helical domain of Ganglioside-induced differentiation-associated protein 1-like proteins; Glutathione S-transferase (GST) C-terminal domain family, Ganglioside-induced differentiation-associated protein 1 (GDAP1)-like subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.


Pssm-ID: 198313  Cd Length: 111  Bit Score: 35.12  E-value: 7.46e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1835513776 131 QLREELMQIA---PVFGQKPYFLSDEFSLVDCYLAPLLWRLPILGIELSGAGS---KELKGYMTRVFERDSF 196
Cdd:cd03204    40 QVEKELGERKretDESGQQQWLCGESFTAADISLSVLLHRLKFLGLSRRFWGNgkrPNIESYFERVRQRESF 111
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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