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Conserved domains on  [gi|1787228420|gb|QGZ82514|]
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protein DsrB [Klebsiella pneumoniae]

Protein Classification

protein DsrB( domain architecture ID 10013609)

protein DsrB is essential for the low temperature expression of RpoS during exponential growth

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10708 PRK10708
protein DsrB;
3-64 1.01e-42

protein DsrB;


:

Pssm-ID: 182664  Cd Length: 62  Bit Score: 132.13  E-value: 1.01e-42
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1787228420  3 MQVNDRVTVKTDGGPRRSGVVLAIESFSEGTMYLVSLEDYPLGIWFFNEIGHPDGIFVEKEV 64
Cdd:PRK10708   1 MKVNDRVTVKTDGGPRRPGVVLAVEEFSEGTMYLVSLEDYPLGIWFFNEAGHQDGIFVEKAE 62
 
Name Accession Description Interval E-value
PRK10708 PRK10708
protein DsrB;
3-64 1.01e-42

protein DsrB;


Pssm-ID: 182664  Cd Length: 62  Bit Score: 132.13  E-value: 1.01e-42
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1787228420  3 MQVNDRVTVKTDGGPRRSGVVLAIESFSEGTMYLVSLEDYPLGIWFFNEIGHPDGIFVEKEV 64
Cdd:PRK10708   1 MKVNDRVTVKTDGGPRRPGVVLAVEEFSEGTMYLVSLEDYPLGIWFFNEAGHQDGIFVEKAE 62
DSRB pfam10781
Dextransucrase DSRB; DSRB is a novel dextransucrase which produces a dextran different from ...
 3-61 1.72e-30

Dextransucrase DSRB; DSRB is a novel dextransucrase which produces a dextran different from the typical dextran, as it contains (1-6) and (1-2) linkages, when this strain is grown in the presence of sucrose.


Pssm-ID: 431492  Cd Length: 61  Bit Score: 101.06  E-value: 1.72e-30
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 1787228420  3 MQVNDRVTVKTDGGPRRSGVVLAIESFSEGTMYLVSLEDYPLGIWFFNEIGHPDGIFVE 61
Cdd:pfam10781  1 MKVNDTVTVKTDGDERREGVILAVEPFSEGVMYLVALEDYPEGIWFFNEVDSGDGVFVE 59
 
Name Accession Description Interval E-value
PRK10708 PRK10708
protein DsrB;
3-64 1.01e-42

protein DsrB;


Pssm-ID: 182664  Cd Length: 62  Bit Score: 132.13  E-value: 1.01e-42
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1787228420  3 MQVNDRVTVKTDGGPRRSGVVLAIESFSEGTMYLVSLEDYPLGIWFFNEIGHPDGIFVEKEV 64
Cdd:PRK10708   1 MKVNDRVTVKTDGGPRRPGVVLAVEEFSEGTMYLVSLEDYPLGIWFFNEAGHQDGIFVEKAE 62
DSRB pfam10781
Dextransucrase DSRB; DSRB is a novel dextransucrase which produces a dextran different from ...
 3-61 1.72e-30

Dextransucrase DSRB; DSRB is a novel dextransucrase which produces a dextran different from the typical dextran, as it contains (1-6) and (1-2) linkages, when this strain is grown in the presence of sucrose.


Pssm-ID: 431492  Cd Length: 61  Bit Score: 101.06  E-value: 1.72e-30
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 1787228420  3 MQVNDRVTVKTDGGPRRSGVVLAIESFSEGTMYLVSLEDYPLGIWFFNEIGHPDGIFVE 61
Cdd:pfam10781  1 MKVNDTVTVKTDGDERREGVILAVEPFSEGVMYLVALEDYPEGIWFFNEVDSGDGVFVE 59
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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