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Conserved domains on  [gi|1776245477|gb|QGK56011|]
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hypothetical protein GJE00_05100 [Listeria monocytogenes]

Protein Classification

HesB/YadR/YfhF family protein( domain architecture ID 10008874)

HesB/YadR/YfhF family protein similar to Bacillus subtilis protein YneR

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YneR COG4841
Uncharacterized conserved protein YneR, related to HesB/YadR/YfhF family [Function unknown];
1-96 1.05e-43

Uncharacterized conserved protein YneR, related to HesB/YadR/YfhF family [Function unknown];


:

Pssm-ID: 443869  Cd Length: 95  Bit Score: 136.89  E-value: 1.05e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1776245477   1 MNIEVTDQANKWFHDEFDVANGNGIRLFAKYGGSnSSLHPGFSIGLTAEKPQEAAVAEKKEDLIFFIEDHDYWYFKDHDW 80
Cdd:COG4841     1 MKITITDQALKWFKEELDLESGDGIRFFVRYGGS-SPVQEGFSLGVTVEEPDEPAVETEVDGITFFVEEDDLWFFDGHDL 79

                          90
                  ....*....|....*.
gi 1776245477  81 KIDYEPKTEEVLFSFK 96
Cdd:COG4841    80 TVDYDEKTDEPVFEYK 95
 
Name Accession Description Interval E-value
YneR COG4841
Uncharacterized conserved protein YneR, related to HesB/YadR/YfhF family [Function unknown];
1-96 1.05e-43

Uncharacterized conserved protein YneR, related to HesB/YadR/YfhF family [Function unknown];


Pssm-ID: 443869  Cd Length: 95  Bit Score: 136.89  E-value: 1.05e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1776245477   1 MNIEVTDQANKWFHDEFDVANGNGIRLFAKYGGSnSSLHPGFSIGLTAEKPQEAAVAEKKEDLIFFIEDHDYWYFKDHDW 80
Cdd:COG4841     1 MKITITDQALKWFKEELDLESGDGIRFFVRYGGS-SPVQEGFSLGVTVEEPDEPAVETEVDGITFFVEEDDLWFFDGHDL 79

                          90
                  ....*....|....*.
gi 1776245477  81 KIDYEPKTEEVLFSFK 96
Cdd:COG4841    80 TVDYDEKTDEPVFEYK 95
 
Name Accession Description Interval E-value
YneR COG4841
Uncharacterized conserved protein YneR, related to HesB/YadR/YfhF family [Function unknown];
1-96 1.05e-43

Uncharacterized conserved protein YneR, related to HesB/YadR/YfhF family [Function unknown];


Pssm-ID: 443869  Cd Length: 95  Bit Score: 136.89  E-value: 1.05e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1776245477   1 MNIEVTDQANKWFHDEFDVANGNGIRLFAKYGGSnSSLHPGFSIGLTAEKPQEAAVAEKKEDLIFFIEDHDYWYFKDHDW 80
Cdd:COG4841     1 MKITITDQALKWFKEELDLESGDGIRFFVRYGGS-SPVQEGFSLGVTVEEPDEPAVETEVDGITFFVEEDDLWFFDGHDL 79

                          90
                  ....*....|....*.
gi 1776245477  81 KIDYEPKTEEVLFSFK 96
Cdd:COG4841    80 TVDYDEKTDEPVFEYK 95
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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