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Conserved domains on  [gi|1761026597|gb|QFO86925|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Eudyptes moseleyi]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-241 8.43e-120

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 344.88  E-value: 8.43e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597   1 AIIPLISKSHHPRAIEATIKYFLVQATASTLMLFSSMTNAWLTGQWDITQLTHPTSCLLLTTAIAMKLGLVPFHFWFPEV 80
Cdd:MTH00112   39 AIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEV 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  81 LQGSPMITALLLTTMMKFPPITILFMTSHTLNPTLLTSMAIASAALGGWMGLNQTQIRKILAFSSISHLGWMTIIIIYSP 160
Cdd:MTH00112  119 LQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSP 198

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 161 KLTLLTFYLYSLTTITTFLMLNTTKTLKLSTMMTSWTKAPMLNATLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTVA 240
Cdd:MTH00112  199 KLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPT 278


                  .
gi 1761026597 241 A 241
Cdd:MTH00112  279 A 279
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-241 8.43e-120

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 344.88  E-value: 8.43e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597   1 AIIPLISKSHHPRAIEATIKYFLVQATASTLMLFSSMTNAWLTGQWDITQLTHPTSCLLLTTAIAMKLGLVPFHFWFPEV 80
Cdd:MTH00112   39 AIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEV 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  81 LQGSPMITALLLTTMMKFPPITILFMTSHTLNPTLLTSMAIASAALGGWMGLNQTQIRKILAFSSISHLGWMTIIIIYSP 160
Cdd:MTH00112  119 LQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSP 198

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 161 KLTLLTFYLYSLTTITTFLMLNTTKTLKLSTMMTSWTKAPMLNATLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTVA 240
Cdd:MTH00112  199 KLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPT 278


                  .
gi 1761026597 241 A 241
Cdd:MTH00112  279 A 279
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 10-241 4.07e-27

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 108.28  E-value: 4.07e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  10 HHPRAIEATIKYFLVQATASTLMLF-SSMTNAwLTGQWDITQLTHPTS------------CLLLTTAIAMKLGLVPFHFW 76
Cdd:COG1007   147 DDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAAALAagganspllllgLVLVLAGLAFKLSAVPFHMW 225

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  77 FPEVLQGSPMITALLLTTMMK---FPPITILFMTS-HTLNP---TLLTSMAIASAALGGWMGLNQTQIRKILAFSSISHL 149
Cdd:COG1007   226 TPDVYEGAPTPVTAFLATAPKiaaFAALLRLLVEAfPGLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHA 305

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 150 GWMTIIIIYSPKLTL--LTFYL--YSLTTITTFLMLNT-TKTLKLSTMMTSW----TKAPMLNATLMLTLLSLAGLPPLT 220
Cdd:COG1007   306 GYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLlSRKGGEAEEIEDLaglaRRSPLLALAMTIFLLSLAGIPPTA 385

                         250       260
                  ....*....|....*....|.
gi 1761026597 221 GFLPKWLIIQELTKQEMTVAA 241
Cdd:COG1007   386 GFFGKFYVFSAAVEAGLYWLA 406
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 12-230 4.01e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 102.78  E-value: 4.01e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  12 PRAIEATIKYFLVQATASTLMLFSSMTNAWLTGQWDITQL-----------THPTSCLLLTTAIAMKLGLVPFHFWFPEV 80
Cdd:pfam00361  29 PRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssGLLLLFLLILVGFLFKSAQVPFHTWLPDA 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  81 LQGSPM-ITALLLTTMMKFPPITILFMTS--HTLNPT---LLTSMAIASAALGGWMGLNQTQIRKILAFSSISHLGWMTI 154
Cdd:pfam00361 109 YEGAPTpVSALLAATLVKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLI 188

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 155 II----IYSPKLTLLTFYLYSLTTITTFLM-----LNTTKTLKLSTMMTSWTKAPMLNATLMLTLLSLAGLPPLTGFLPK 225
Cdd:pfam00361 189 ALgagtIYGIQAAIFHLLTHGLFSAGLFLCagsviYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGK 268


                  ....*
gi 1761026597 226 WLIIQ 230
Cdd:pfam00361 269 FLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 13-237 8.91e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 87.31  E-value: 8.91e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  13 RAIEATIKYFLVQATASTLMLFSSMTNAWLTGQWDITQLTHPTSC------------LLLTTAIAMKLGLVPFHFWFPEV 80
Cdd:TIGR01770 150 FSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDV 229

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  81 LQGSPMITALLLTTMMK---FPPITILFMT-----SHTLNPTLLTsMAIASAALGGWMGLNQTQIRKILAFSSISHLGWM 152
Cdd:TIGR01770 230 YEGAPTPVTAFFSIVPKiaiFAVFLRLFLYilfgfSEAWQIFLAI-IAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYI 308

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 153 -------TIIIIYSPKLTLLTFYLYSLTTITTFLMLNTTK---TLKLSTMMTSWTKAPMLNATLMLTLLSLAGLPPLTGF 222
Cdd:TIGR01770 309 ligllagTLEGIKAVLFYIFIYALMSLGAFGVLSLLRSYKdewIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGF 388

                         250
                  ....*....|....*
gi 1761026597 223 LPKWLIIQELTKQEM 237
Cdd:TIGR01770 389 FGKFYVFFALLKSGL 403
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-241 8.43e-120

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 344.88  E-value: 8.43e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597   1 AIIPLISKSHHPRAIEATIKYFLVQATASTLMLFSSMTNAWLTGQWDITQLTHPTSCLLLTTAIAMKLGLVPFHFWFPEV 80
Cdd:MTH00112   39 AIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEV 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  81 LQGSPMITALLLTTMMKFPPITILFMTSHTLNPTLLTSMAIASAALGGWMGLNQTQIRKILAFSSISHLGWMTIIIIYSP 160
Cdd:MTH00112  119 LQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSP 198

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 161 KLTLLTFYLYSLTTITTFLMLNTTKTLKLSTMMTSWTKAPMLNATLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTVA 240
Cdd:MTH00112  199 KLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPT 278


                  .
gi 1761026597 241 A 241
Cdd:MTH00112  279 A 279
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-241 1.36e-99

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 293.63  E-value: 1.36e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597   1 AIIPLISKSHHPRAIEATIKYFLVQATASTLMLFSSMTNAWLTGQWDITQLTHPTSCLLLTTAIAMKLGLVPFHFWFPEV 80
Cdd:MTH00135   39 AIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEV 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  81 LQGSPMITALLLTTMMKFPPITILFMTSHTlNPTLLTSMAIASAALGGWMGLNQTQIRKILAFSSISHLGWMTIIIIYSP 160
Cdd:MTH00135  119 LQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTSTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSP 197

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 161 KLTLLTFYLYSLTTITTFLMLNTTKTLKLSTMMTSWTKAPMLNATLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTVA 240
Cdd:MTH00135  198 SLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLT 277


                  .
gi 1761026597 241 A 241
Cdd:MTH00135  278 A 278
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-241 3.24e-93

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 277.19  E-value: 3.24e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597   1 AIIPLISKSHHPRAIEATIKYFLVQATASTLMLFSSMTNAWLTGQWDITQLTHPTSCLLLTTAIAMKLGLVPFHFWFPEV 80
Cdd:MTH00070   39 AIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEV 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  81 LQGSPMITALLLTTMMKFPPITILFMTSHTLNPTLLTSMAIASAALGGWMGLNQTQIRKILAFSSISHLGWMTIIIIYSP 160
Cdd:MTH00070  119 LQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSP 198

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 161 KLTLLTFYLYSLTTITTFLMLNTTKTLKLSTMMTSWTKAPMLNATLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTVA 240
Cdd:MTH00070  199 HLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTL 278


                  .
gi 1761026597 241 A 241
Cdd:MTH00070  279 A 279
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-241 1.15e-85

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 258.24  E-value: 1.15e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597   1 AIIPLISKSHHPRAIEATIKYFLVQATASTLMLFSSMTNAWLTGQWDITQLTHPTSCLLLTTAIAMKLGLVPFHFWFPEV 80
Cdd:MTH00105   39 AIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEV 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  81 LQGSPMITALLLTTMMKFPPITILFMTSHTLNPTLLTSMAIASAALGGWMGLNQTQIRKILAFSSISHLGWMTIIIIYSP 160
Cdd:MTH00105  119 TQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNP 198

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 161 KLTLLTFYLYSLTTITTFLMLNTTKTLKLSTMMTSWTKAPMLNATLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTVA 240
Cdd:MTH00105  199 TLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIIL 278


                  .
gi 1761026597 241 A 241
Cdd:MTH00105  279 P 279
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-241 4.24e-69

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 215.99  E-value: 4.24e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597   1 AIIPLISKSHHPRAIEATIKYFLVQATASTLMLFSSMTNAWLTGQWDITQLTHPTSCLLLTTAIAMKLGLVPFHFWFPEV 80
Cdd:MTH00200   39 AIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDV 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  81 LQGSPMITALLLTTMMKFPPITILFMTSHTLNPTLLTSMAIASAALGGWMGLNQTQIRKILAFSSISHLGWMTIIIIYSP 160
Cdd:MTH00200  119 LQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSP 198

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 161 KLTLLTFYLYSLTTITTFLMLNTTKTLKLSTMMTSWTKAPMLNATLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTVA 240
Cdd:MTH00200  199 NLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIY 278


                  .
gi 1761026597 241 A 241
Cdd:MTH00200  279 A 279
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-229 4.61e-69

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 215.95  E-value: 4.61e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597   1 AIIPLISKSHHPRAIEATIKYFLVQATASTLMLFSSMTNAWLTGQWDITQLTHPTSCLLLTTAIAMKLGLVPFHFWFPEV 80
Cdd:MTH00041   39 SIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDV 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  81 LQGSPMITALLLTTMMKFPPITILFMTSHTLNPTLLTSMAIASAALGGWMGLNQTQIRKILAFSSISHLGWMTIIIIYSP 160
Cdd:MTH00041  119 LQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSP 198

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1761026597 161 KLTLLTFYLYSLTTITTFLMLNTTKTLKLSTMMTSWTKAPMLNATLMLTLLSLAGLPPLTGFLPKWLII 229
Cdd:MTH00041  199 NASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLGGLPPLTGFLNKFISL 267
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 2-238 4.62e-45

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 153.44  E-value: 4.62e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597   2 IIPLISKSHHPRAIEATIKYFLVQATASTLMLFSSMTNAWLTGqwditqLTHPTSCLLLTTAIAMKLGLVPFHFWFPEVL 81
Cdd:MTH00160   41 FIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLM------LFNNISSMLINSSLLLKLGAAPFHFWFPEVM 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  82 QGSPMITALLLTTMMKFPPITILfmtSHTLNPTLLTSMAIASAALGGWMGLNQTQIRKILAFSSISHLGWMTIIIIYSPK 161
Cdd:MTH00160  115 EGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIILSAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISEN 191

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1761026597 162 LTLLTFYLYSLTTITTFLMLNTTKTLKLSTMMTSWTKAPMLNATLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMT 238
Cdd:MTH00160  192 LWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMF 268
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-240 5.85e-40

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 140.02  E-value: 5.85e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597   1 AIIPLISKSHHPRAIEATIKYFLVQATASTLMLFSSMTNAWLTGQWDITqlthptscLLLTTAIAMKLGLVPFHFWFPEV 80
Cdd:MTH00144   39 GFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM--------SLLLLGLCLKLGLFPFHFWVPSV 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  81 LQGSPMITALLLTTMMKFPPItiLFMTSHTLNPTLLTS---MAIASAALGGWMGLNQTQIRKILAFSSISHLGWMTIIII 157
Cdd:MTH00144  111 MAGLSWLSCFLLLTWQKVAPL--FLLSNFLDLYWLAYLlcvISVLSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAIL 188

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 158 YSPKLTLLTFYLYSLTTITTFLMLNtTKTLKLSTMMTSWTKAPMLNATLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEM 237
Cdd:MTH00144  189 HGSWLMWMYFLIYIVSSGFLFFSLW-SGDSGSMKDLGSLKPSYKTGLSIISLLLSLGGLPPFLGFCSKLLVLISSMESSP 267


                  ...
gi 1761026597 238 TVA 240
Cdd:MTH00144  268 LLL 270
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 3-237 1.41e-35

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 128.74  E-value: 1.41e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597   3 IPLISKSHHPRAIEATIKYFLVQATASTLMLFSSmtnawlTGQWDITQLTHPTSCLLLTTAIAMKLGLVPFHFWFPEVLQ 82
Cdd:MTH00011   43 VPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSFPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMS 116

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  83 GSPMITALLLTTMMKFPPITILFMTSHTLNPTLLTSMAIASAALGGWMGLNQTQIRKILAFSSISHLGWMTIIIIYSPKL 162
Cdd:MTH00011  117 SISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSM 196

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1761026597 163 TLLTFYLYSLTTITTFLMLNTTKTLKLSTMMTSWTKAPMLNATLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEM 237
Cdd:MTH00011  197 AILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGLPPFTGFMPKLMAIETLTSNSM 271
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 3-232 1.23e-30

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 115.54  E-value: 1.23e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597   3 IPLISKSHHPRAIEATIKYFLVQATASTLMLFSSMTNAwltgqwdITQLTHPTSCLLLTTAIAMKLGLVPFHFWFPEVLQ 82
Cdd:MTH00197   35 IPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSF-------SNLYLSLLSVVLVILGLLLKLGAFPFHFWVPSVME 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  83 GSPMITALLLTTMMKFPPITILFMTSHtlNPTLLTSMAIASAALGGWMGLNQTQIRKILAFSSISHLGWMTIIIIYSPKL 162
Cdd:MTH00197  108 SLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGIGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSI 185

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 163 TLLTFYLYSLTTITTFLMLNTTKTLKLSTMMTSWTKAPMLNATLMLTLLSLAGLPPLTGFLPKWLIIQEL 232
Cdd:MTH00197  186 FMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLGGLPPLSGFFLKWLILTSL 255
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 10-241 4.07e-27

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 108.28  E-value: 4.07e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  10 HHPRAIEATIKYFLVQATASTLMLF-SSMTNAwLTGQWDITQLTHPTS------------CLLLTTAIAMKLGLVPFHFW 76
Cdd:COG1007   147 DDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAAALAagganspllllgLVLVLAGLAFKLSAVPFHMW 225

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  77 FPEVLQGSPMITALLLTTMMK---FPPITILFMTS-HTLNP---TLLTSMAIASAALGGWMGLNQTQIRKILAFSSISHL 149
Cdd:COG1007   226 TPDVYEGAPTPVTAFLATAPKiaaFAALLRLLVEAfPGLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHA 305

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 150 GWMTIIIIYSPKLTL--LTFYL--YSLTTITTFLMLNT-TKTLKLSTMMTSW----TKAPMLNATLMLTLLSLAGLPPLT 220
Cdd:COG1007   306 GYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLlSRKGGEAEEIEDLaglaRRSPLLALAMTIFLLSLAGIPPTA 385

                         250       260
                  ....*....|....*....|.
gi 1761026597 221 GFLPKWLIIQELTKQEMTVAA 241
Cdd:COG1007   386 GFFGKFYVFSAAVEAGLYWLA 406
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 16-229 2.89e-26

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 104.34  E-value: 2.89e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  16 EATIKYFLVQATASTLMLFS-------------SMTNAWLTGQWDITQLTHPTSCLLLTTAIAMKLGLVPFHFWFPEVLQ 82
Cdd:MTH00196   44 EAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINLVLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYE 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  83 GSPMITALLLTTMMKFPPITILFmtSHTLNPTLLTSMAIASAALGGWMGLNQTQIRKILAFSSISHLGWMTIII----IY 158
Cdd:MTH00196  124 GAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGGLFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFE 201

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1761026597 159 SPKLTLLTFYLYSLTTITTF---LMLNTTKTLKLSTMMTSwTKAPMLNATLMLTLLSLAGLPPLTGFLPKWLII 229
Cdd:MTH00196  202 SIQASLVYLFIYIIMSICVFsiiLALNVYKNLIIEFSGLS-RRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 12-230 4.01e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 102.78  E-value: 4.01e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  12 PRAIEATIKYFLVQATASTLMLFSSMTNAWLTGQWDITQL-----------THPTSCLLLTTAIAMKLGLVPFHFWFPEV 80
Cdd:pfam00361  29 PRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssGLLLLFLLILVGFLFKSAQVPFHTWLPDA 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  81 LQGSPM-ITALLLTTMMKFPPITILFMTS--HTLNPT---LLTSMAIASAALGGWMGLNQTQIRKILAFSSISHLGWMTI 154
Cdd:pfam00361 109 YEGAPTpVSALLAATLVKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLI 188

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 155 II----IYSPKLTLLTFYLYSLTTITTFLM-----LNTTKTLKLSTMMTSWTKAPMLNATLMLTLLSLAGLPPLTGFLPK 225
Cdd:pfam00361 189 ALgagtIYGIQAAIFHLLTHGLFSAGLFLCagsviYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGK 268


                  ....*
gi 1761026597 226 WLIIQ 230
Cdd:pfam00361 269 FLILA 273
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 13-229 2.97e-25

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 102.79  E-value: 2.97e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  13 RAIEATIKYFLVQATASTLMLFSSMTNAWLTGQWDI----TQLTHPTSCLLLTTAIAMKLGLVPFHFWFPEVLQGSPMIT 88
Cdd:MTH00199  145 YSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTIT 224

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  89 ALLLTTMMKFPPITILFMTSHTLNPTLLTsmAIASAALGGWMGLNQTQIRKILAFSSISHLGW----MTIIIIYSPKLTL 164
Cdd:MTH00199  225 TALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYGAIGALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASL 302

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1761026597 165 LTFYLYSLTTITTF---LMLNTTKTLKLSTMMTSwTKAPMLNATLMLTLLSLAGLPPLTGFLPKWLII 229
Cdd:MTH00199  303 IYMIIYVIMSICSFsiiLSLKLTKGLIVEVSGLS-RKNPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
13-241 6.50e-24

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 99.12  E-value: 6.50e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  13 RAIEATIKYFLVQATASTLMLFSSMTNAWLTGQWDITQLTHPTS------------CLLLTTAIAMKLGLVPFHFWFPEV 80
Cdd:PRK05777  151 RSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKALAdgsgnsllllfgLVFLLVGLAFKLSAVPFHMWTPDV 230

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  81 LQGSPMITALLLTTMMK---FPPIT----ILFMTSHTLNPTLLTSMAIASAALGGWMGLNQTQIRKILAFSSISHLGWMT 153
Cdd:PRK05777  231 YEGAPTPVTAFLATAPKiaaFAVLLrllvVAFGGLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLL 310

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 154 IIIIYSPKLTL--LTFYL--YSLTTITTFLMLNTTKT-LKLSTMMTSWT----KAPMLNATLMLTLLSLAGLPPLTGFLP 224
Cdd:PRK05777  311 VGLAAGTAEGYsaVLFYLlaYLFMTLGAFGVISLLRRkGGEAESISDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWG 390

                         250
                  ....*....|....*..
gi 1761026597 225 KWLIIQELTKQEMTVAA 241
Cdd:PRK05777  391 KFYVFEAAVEAGLWWLA 407
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 4-241 3.99e-20

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 88.28  E-value: 3.99e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597   4 PLISKSHHPRAIEATIKYFLVQATASTLMLFSSMTNAWLTGQWDITQLTH----------PTSCLLLTTAIAMKLGLVPF 73
Cdd:COG0651   145 GLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAArlaeldpgllLAAFALLLVGFGIKAALFPL 224

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  74 HFWFPEVLQGSPM-ITALLLTTMMKFPPITIL--------FMTSHTLNPTLLTsMAIASAALGGWMGLNQTQIRKILAFS 144
Cdd:COG0651   225 HFWLPDAYPAAPSpVSALLSGLLTKVGVYAILrvltllfgADPALFLGTLLLV-LGLLTMLVGALGALAQRDLKRLLAYS 303

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 145 SISHLGWMTIII-IYSPK-LTLLTFYL--YSLTTITTFL----MLNTTKTLKLSTMMTSWTKAPMLNATLMLTLLSLAGL 216
Cdd:COG0651   304 SVSQIGYILLGLgLGTPLgLAGALFHLlnHALAKALLFLaagaIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGL 383

                         250       260
                  ....*....|....*....|....*
gi 1761026597 217 PPLTGFLPKWLIIQELTKQEMTVAA 241
Cdd:COG0651   384 PPLSGFVSKWLLLQAALEAGAWLLA 408
ndhB CHL00049
NADH dehydrogenase subunit 2
 13-225 5.08e-20

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 88.14  E-value: 5.08e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  13 RAIEATIKYFLVQATASTLML--FSsmtnaWLTGQ-------WDI------TQLTHPTSCLL----LTTAIAMKLGLVPF 73
Cdd:CHL00049  159 RSNEATMKYLLMGGASSSILVygFS-----WLYGLsggeielQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPF 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  74 HFWFPEVLQGSPM-----------ITALLLTTMMkfppITILFMTSHTLNPTLLTSMAIASAALGGWMGLNQTQIRKILA 142
Cdd:CHL00049  234 HQWTPDVYEGSPTpvvaflsvtskVAASALATRI----FDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLA 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 143 FSSISHLGWMTIIII-------YSPKLTLLTFYLY----SLTTITTFLMlnTTKTLKLSTMMTSWTKAPMLNATLMLTLL 211
Cdd:CHL00049  310 YSSIGQIGYVIIGIIvgdsndgYASMITYMLFYIFmnlgTFACIVLFGL--RTGTDNIRDYAGLYTKDPFLALSLALCLL 387

                         250
                  ....*....|....
gi 1761026597 212 SLAGLPPLTGFLPK 225
Cdd:CHL00049  388 SLGGIPPLAGFFGK 401
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 13-237 8.91e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 87.31  E-value: 8.91e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  13 RAIEATIKYFLVQATASTLMLFSSMTNAWLTGQWDITQLTHPTSC------------LLLTTAIAMKLGLVPFHFWFPEV 80
Cdd:TIGR01770 150 FSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDV 229

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  81 LQGSPMITALLLTTMMK---FPPITILFMT-----SHTLNPTLLTsMAIASAALGGWMGLNQTQIRKILAFSSISHLGWM 152
Cdd:TIGR01770 230 YEGAPTPVTAFFSIVPKiaiFAVFLRLFLYilfgfSEAWQIFLAI-IAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYI 308

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 153 -------TIIIIYSPKLTLLTFYLYSLTTITTFLMLNTTK---TLKLSTMMTSWTKAPMLNATLMLTLLSLAGLPPLTGF 222
Cdd:TIGR01770 309 ligllagTLEGIKAVLFYIFIYALMSLGAFGVLSLLRSYKdewIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGF 388

                         250
                  ....*....|....*
gi 1761026597 223 LPKWLIIQELTKQEM 237
Cdd:TIGR01770 389 FGKFYVFFALLKSGL 403
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 58-229 1.34e-17

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 81.44  E-value: 1.34e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  58 LLLTTAIAMKLGLVPFHFWFPEVLQGSPMITALLLTTMMKFppITILFMTSHTLNPTLLTSMAIASAALGGWMGLNQTQI 137
Cdd:MTH00198  303 LFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITSKLLLSVAIISLVVGAFGALNQTRI 380

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 138 RKILAFSSISHLGWMTIII----------IYSPKLTLLTFYLYSLTTITTFLMLNTTKTL---------------KLSTM 192
Cdd:MTH00198  381 KRLLAYSGIGHIGFILIGVsagtyeslqaSWTYAVTYLVSALASFTVICTLEEFGTRTPTsrqrdgsfgnynlvrRLVDL 460

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1761026597 193 MTSWTKAPMLNATLMLTLLSLAGLPPLTGFLPKWLII 229
Cdd:MTH00198  461 TILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
12-225 4.24e-14

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 70.85  E-value: 4.24e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  12 PRAIEATIKYFLVQATASTLMLF---------------SSMTNAWLTGQWDITQLthptSCLLLTTAIAMKLGLVPFHFW 76
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgssllyglsggstqlSAIALALITSPSLGLAL----ALVFVIAGIAFKISAVPFHQW 232

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  77 FPEVLQGSPMITALLLTTMMKFP--PITILFMTSHTLNPT-----LLTSMAIASAALGGWMGLNQTQIRKILAFSSISHL 149
Cdd:PRK02504  233 TPDVYEGSPTPVVAFLSVGSKAAgfALAIRLLVTAFPSFDeqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQA 312

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 150 GWMTIIII------YSPKLTLLTFYLY----SLTTITTFLMlnTTKTLKLSTMMTSWTKAPMLNATLMLTLLSLAGLPPL 219
Cdd:PRK02504  313 GFVMIGLVagteagYASMVFYLLAYLFmnlgAFACVILFSL--RTGTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPL 390


                  ....*.
gi 1761026597 220 TGFLPK 225
Cdd:PRK02504  391 AGFFGK 396
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 12-230 1.30e-13

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 69.58  E-value: 1.30e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  12 PRAIEATIKYFLVQATASTLMLFSSMTNAWLTGQW----DITQLTHPTSC-----LLLTTAIAMKLGLVPFHFWFPEV-- 80
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhv 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  81 ---LQGSPMITALLLTT----MMKFppITILFMTSHTLNPTLLTSMAIASAALGGWMGLNQTQIRKILAFSSISHLGWMT 153
Cdd:TIGR01972 232 eapTAGSVILAGVLLKMgtygFLRF--NLPLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 154 IIIIYSPKLTLL--TFYLYSLTTITTFLML------NTTKTLKLSTMMTSWTKAPMLNATLMLTLLSLAGLPPLTGFLPK 225
Cdd:TIGR01972 310 LGIFSFNELGISgaVFQMISHGLITAALFLlvgvlyERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGE 389


                  ....*
gi 1761026597 226 WLIIQ 230
Cdd:TIGR01972 390 FLILL 394
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 11-229 1.85e-13

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 68.95  E-value: 1.85e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  11 HPRAIEATIKYFLVQATASTLMLFSSMTNAWLTGQW--DITQLTH---PTS-----CLLLTTAIAMKLGLVPFHFWFPEV 80
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplPLTaqlllFLAFFIAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  81 LQGSPM-ITALLLTTMMKFP-------PITILFMTSHTLNPTLLTsMAIASAALGGWMGLNQTQIRKILAFSSISHLGWM 152
Cdd:COG1008   236 HVEAPTaGSVLLAGVLLKMGgygllrfALPLFPEASAYFAPLLAA-LGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 153 TIIIiyspkltlltfylYSLTTI----TTFLMLN-----------------TTKTLKLSTMMTSWTKAPMLNATLMLTLL 211
Cdd:COG1008   315 LLGI-------------FALNPLglqgAVLQMVShglitaalfllvgvlydRTHTRDIADLGGLAKRMPVLAALFLLAAL 381

                         250
                  ....*....|....*...
gi 1761026597 212 SLAGLPPLTGFLPKWLII 229
Cdd:COG1008   382 ASLGLPGTSGFVGEFLVL 399
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 16-241 3.76e-10

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 59.24  E-value: 3.76e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  16 EATIKYFLVQATASTLMLFSSMTNAWLTGQWDIT-------QLTHPTSC----LLLTTAIAMKLGLVPFHFWFPE----- 79
Cdd:PRK08668  147 KASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFAdisqgliNDTSTGFAlivfLFLLAFGVAKAGIFPLHVWAPDaysea 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  80 ------VLQG--SPMITALLLTTMMKFPPITIL-----FMTSHTLNPTLLTSMAIaSAALGGWMGLNQTQIRKILAFSSI 146
Cdd:PRK08668  227 pqsfsaVLSGqlSKLGAYGFLLVLYVLPGTKLFsefgtYRGVPLFNYILAWLGNI-SIIVGTLMAILQEDIKKLIAYSSV 305

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 147 SHLGW--MTIIIIYSPKLTLLTFYLYSLTTITTFLMLNT------TKTLKLSTMMTSWTKAPMLNATLMLTLLSLAGLPP 218
Cdd:PRK08668  306 ANGGYilVGLGLGTSLGFAGGLFHVFNHALFKGLFFLIFaaviyrTGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPP 385

                         250       260
                  ....*....|....*....|...
gi 1761026597 219 LTGFLPKWLIIQELTKQEMTVAA 241
Cdd:PRK08668  386 MSGFASKWLIFEALISKGMPITA 408
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 12-228 8.46e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 58.18  E-value: 8.46e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  12 PRAIEATIKYFLVQATASTLMLFSSmtnAWLTGQWDI-------------TQLTHPTSCLLLTTAIAMKLGLVPFHFWFP 78
Cdd:PRK08376  168 WEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTlnmaylavkmsenPTVVAKIALALFIAGLAMKSGAVPVHMWLP 244

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  79 EVLQGSPM-ITALLLTtmMKFPPITILFMTSHTL-NPTLLTS--------MAIASAALGGWMGLNQTQIRKILAFSSISH 148
Cdd:PRK08376  245 DAYPAAPSsISAMLLV--IKQAGLYALARVLFSIyGPAINLAtvgwviiiLGCLTMFVGVAMAVVQKDVKRLLAYHSVSQ 322

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 149 LGWM------TIIIIYSPKLT-------------LLTFYLY-SLTTITTFLMLNTTKTLKLSTMMTSWTKAPMLNATLML 208
Cdd:PRK08376  323 IGYMllglgvGLAALGDPAMAsygeialaggiyhIVNHALYkALLFLTAGAVIYETGTRNLNELGGLARTMPKTTIAFLI 402

                         250       260
                  ....*....|....*....|
gi 1761026597 209 TLLSLAGLPPLTGFLPKWLI 228
Cdd:PRK08376  403 GAAAIVGLPPFNGFASKWLI 422
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 4-232 6.24e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 55.66  E-value: 6.24e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597   4 PLISKSHHPRAIEATIKYFLVQATASTLMLFS-SMTNAwLTGQWDITQLTH--PTSCLLLT------TAIAMKLGLVPFH 74
Cdd:PRK08375  144 ALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLAGalAENPTVVTafgfvlLALALKAAVFPLH 222

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  75 FWFPEVLQG-SPMITALLLTTMMK----------FPPITILFMTSHTLNpTLLTSMAIASAALGGWMGLNQTQIRKILAF 143
Cdd:PRK08375  223 TWLPRAYPAaPPVVTALLSGLVTKvavyaliriyFTVFGGDFRFALGLG-WLLAVLALLSMLVGSLAALGQDDVKRVLAY 301

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 144 SSISHLGWMTIIIIYSPKLTLL--TFYL--YSLTTITTFL----MLNTTKTLKLSTMMTSWTKAPMLNATLMLTLLSLAG 215
Cdd:PRK08375  302 STVSQMGYILLGLALLTPLALAagLLHLlhHALMKGALFLaagaIEVTYGTRRLSELSGLGRRMPLTAAAFAVASLSLIG 381

                         250
                  ....*....|....*..
gi 1761026597 216 LPPLTGFLPKWLIIQEL 232
Cdd:PRK08375  382 VPPTSGFVSKWYLVVGA 398
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 43-225 1.65e-08

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 54.54  E-value: 1.65e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  43 TGQWDITQL-THPTSCLLLTTAIAM-------KLGLVPFHFWFPEVLQGSPMITALLLTTMM---------KFPPItilF 105
Cdd:PRK12644  184 AGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG---F 260

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 106 MTSHTLNPTLLTsMAIASAALGGWMGLNQTQIRKILAFSSISHLGWMTIII-IYSPKLTL--LTFYL-YSLTTITTFLML 181
Cdd:PRK12644  261 ADVPVWRPTVLV-LGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVgIGTRDAALagLAMLLaHALFKAALFLVV 339

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1761026597 182 ----NTTKTLKLSTMMTSWTKAPMLNATLMLTLLSLAGLPPLTGFLPK 225
Cdd:PRK12644  340 giidHSTGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 10-232 2.39e-08

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 54.00  E-value: 2.39e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  10 HHPRAIEATIKYFLVQATASTLMLFSSMTNAWLTGQWDITQL----THPTSCLLLTTAIAM-------KLGLVPFHFWFP 78
Cdd:COG1009   156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELlaaaPTILSSPLLTLILLLlllgafgKSAQFPLHFWLP 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  79 EVLQGsPM-ITALL-LTTMMK---------FPpitILFMTSHTLnpTLLTSMAIASAALGGWMGLNQTQIRKILAFSSIS 147
Cdd:COG1009   236 DAMEG-PTpVSALLhAATMVKagvyllarlSP---LFALSPVWL--TVVAIIGAITALFAALIALAQTDIKRVLAYSTVS 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 148 HLGWMTIiiiyspkLTLLTFYLYSLTTITT--------FLM----LNTTKTLKLSTMMTSWTKAPMLNATLMLTLLSLAG 215
Cdd:COG1009   310 QLGYMFL-------ALGVGAYVAALFHLLThaffkallFLGagsvIHATGTRDIRKMGGLRKKMPITAITFLIGALSLAG 382

                         250
                  ....*....|....*..
gi 1761026597 216 LPPLTGFLPKWLIIQEL 232
Cdd:COG1009   383 IPPFAGFFSKEAILEAA 399
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 12-229 3.28e-08

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 53.28  E-value: 3.28e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  12 PRAIEATIKYFLVQATASTLMLFSSMTNAWL----TGQWDITQLTHPTSCLLLTT--------AIAMKLGLVPFHFWFPE 79
Cdd:PRK05846  157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLLNLPLPPGVQYwlflaffiAFAVKMPMFPLHTWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  80 VLQ-----GSPMITALLLTT----MMKFPpITILFMTSHTLNPTLLTsMAIASAALGGWMGLNQTQIRKILAFSSISHLG 150
Cdd:PRK05846  237 AHVqaptaGSVLLAGILLKMgaygLLRFS-LPLFPDASHEFAPIIIT-LGVIAIIYGALVALAQTDIKKLIAYSSISHMG 314

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 151 WMTIIIIYSPKLTL--LTFYLYSLTTITTFLML------NTTKTLKLSTMMTSWTKAPMLNATLMLTLLSLAGLPPLTGF 222
Cdd:PRK05846  315 FVTLGIFAGNQLGIqgAIFQMISHGLSSAALFLlvgvlyDRLHTRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGF 394


                  ....*..
gi 1761026597 223 LPKWLII 229
Cdd:PRK05846  395 VGEFLIL 401
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
15-230 3.88e-08

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 53.03  E-value: 3.88e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  15 IEATIKYFLVQATASTLML---------FSSMTNAWLTGQWDITQLTHP--TSCLLLTTAIAMKLGLVPFhFWFPEVLQG 83
Cdd:PRK12663  157 LRGAIKYVVLNLIGSWLFLlgigllygtFGTLNMAHIAMRLNDMGDTATltTIALLFLLAFGMKAALFPF-MWLPAAYHT 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  84 SPMITALLLTTMMK-------FPPITILFMTSHTLNPTLLTSMAIASAALGGWMGLNQTQIRKILAFSSISHLGWMTI-I 155
Cdd:PRK12663  236 PNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLgL 315

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 156 IIYSPK-LTLLTFYLYSLTTITTFLMLNT------TKTLKLSTMMTSWTKAPMLNATLMLTLLSLAGLPPLTGFLPKWLI 228
Cdd:PRK12663  316 ALGTPAgINGAIFYLVHDMVVKTALFLIAgslvrlTGYRSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLL 395


                  ..
gi 1761026597 229 IQ 230
Cdd:PRK12663  396 VQ 397
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 71-228 1.02e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 52.23  E-value: 1.02e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  71 VPFHFWFPEVLQG-SPMITALLLTTMMKfPPITILFMTSHTLNPTLL--TSMAIASAA---LGGWMGLNQTQIRKILAFS 144
Cdd:PRK12647  212 FPFHFWLPNAMEApTPVSAYLHSATMVK-AGIYLLARLNPVLGGTPLwqTILPLFGGLtmlTGALLAVRQTDLKLILAYS 290

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 145 SISHLGWMTIIIIYSPKLTLLTFYLY----SLTTITTFLMLNT----TKTLKLSTMMTSWTKAPMLNATLMLTLLSLAGL 216
Cdd:PRK12647  291 TVSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIidheTGTRDITKLGGLRRAMPITAAAALLAALSMAGL 370

                         170
                  ....*....|..
gi 1761026597 217 PPLTGFLPKWLI 228
Cdd:PRK12647  371 PPLFGFLAKELI 382
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 58-230 1.08e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 51.89  E-value: 1.08e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  58 LLLTTAIAMKLGLVPFHFWFPEVLQGSPM-ITAL---LLTTMMKFPPI---TILFmTSHTLNpTLLTSMAIASAALGGWM 130
Cdd:PRK12665  213 AVLLVAFGIKAAVFPLSFWLPDSYPTAPApVTAVfagLLTKVGVYAIIrthTLLF-PGGGLD-TLLMVVALLTMVVGILG 290

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 131 GLNQTQIRKILAFSSISHLGWMTIIIIYSPKLTL--LTFYLYSLTTITTFLML------NTTKTLKLSTMMTSWTKAPML 202
Cdd:PRK12665  291 AIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLsgAIYYVAHHITVQTTLFLvvglieRQAGSSSLRRLGGLAKASPLL 370

                         170       180
                  ....*....|....*....|....*...
gi 1761026597 203 NATLMLTLLSLAGLPPLTGFLPKWLIIQ 230
Cdd:PRK12665  371 AVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
17-230 4.30e-07

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 50.10  E-value: 4.30e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  17 ATIKYFLVQATASTLMLFSSMTNAWLTGQWD------ITQ-LTHPTSCLLLTTAI---AMKLGLVPFHFWFPEV-LQGSP 85
Cdd:PRK07363  158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQnLSLNTQLILLTGLLlgfGIKIPLVPLHTWLPDAyTEASP 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  86 MITALLLTTMMKFPPITILFM-------TSHTLNPTLLTSMAIaSAALGGWMGLNQTQIRKILAFSSISHLGWMTIIIIY 158
Cdd:PRK07363  238 AVAILLGGVLAKLGTYGLLRFglqlfpqTWSLVAPGLAIIGTI-SVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAA 316

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 159 SPKLTLL--TFYLYSLTTITTFLM---------LNTTKTLKLSTMMTSWTKAPMLNATLMLTLLSLAGLPPLTGFLPKWL 227
Cdd:PRK07363  317 GTQLSLLgaVAQMISHGLILALLFhlvgiverkVGTRDLDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVAEFI 396


                  ...
gi 1761026597 228 IIQ 230
Cdd:PRK07363  397 VFQ 399
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 21-232 1.16e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 48.96  E-value: 1.16e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  21 YFLVQATASTLMLFSSMTNAWL-TGQWDITQLTHPT-----SCLLLTTAIAMKLGLVPFHFWFPEVLQGSPM-ITALLLT 93
Cdd:PRK08667  166 FYFVMTQLSTVFLMLGIIVLFIqTGSFELSPLGASAgilslVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSnVSALMSG 245

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  94 TMMKFPPITILFMTSHTLNPTLLTSMAI-----ASAALGGWMGLNQTQIRKILAFSSISHLG--------WMTIIIIYSP 160
Cdd:PRK08667  246 VMLKVAVYGLVRFLMDVLSPELWWGVLIllagsISALLGVIYALKEHDLKGLLAYSSIENIGiilmgiglYVIFGVYGLD 325

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 161 KLTLLTF-----------YLYSLTTITTFLMLNTTKTLKLSTMMTSWTKAPMLNATLMLTLLSLAGLPPLTGFLPKWLII 229
Cdd:PRK08667  326 TLALLALggalfhslnhaLFKSLLFLTAGSVVHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLY 405


                  ...
gi 1761026597 230 QEL 232
Cdd:PRK08667  406 ESF 408
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 10-225 1.40e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 48.67  E-value: 1.40e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  10 HHPRAIEATIKYFLVQATASTLMLFSSMTNAWLTGQWDITQLTHPTSCL--------------LLTTAIAMKLGLVPFHF 75
Cdd:PRK12649  156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELIenikghplflitliLIFIGAAAKSAQGPFYI 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  76 WFPEVLQGSPMITALLLTTMMKFPPITILFMTSHTLNPT-----LLTSMAIASAALGGWMGLNQTQIRKILAFSSISHLG 150
Cdd:PRK12649  236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 151 WMTIIIIYSPK------LTLLTFYLYSLTTITTFLML------NTTKTLKLSTMMTSWTKAPMLNATLMLTLLSLAGLPP 218
Cdd:PRK12649  316 YLMTMYGYTTYhepglgVAAATFHLLNHATFKACLFLvagivaHEAATRDIRKLGGLRKEMPITFIVASIAALAMAGIPP 395


                  ....*..
gi 1761026597 219 LTGFLPK 225
Cdd:PRK12649  396 LNGFLSK 402
PRK12650 PRK12650
DUF4040 family protein;
60-225 6.29e-06

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 46.96  E-value: 6.29e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  60 LTTAIAM--------KLGLVPFHFWFPEVLQGSPMITALLLTTMMKFPPITILFMTSHTL--NPT---LLTSMAIASAAL 126
Cdd:PRK12650  206 LTTVVAVliavaaftKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFhdVAVwnwLLIIVGMITALM 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 127 GGWMGLNQTQIRKILAFSSISHLGWMTIIIIYSPKLTLLTFYLYSLTTI---TTFLML-----NTTKTLKLSTMMTSWTK 198
Cdd:PRK12650  286 GAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAHAlfkSSLFMLigvvdHQAGTRDIRRLGSLWRR 365

                         170       180
                  ....*....|....*....|....*..
gi 1761026597 199 APMLNATLMLTLLSLAGLPPLTGFLPK 225
Cdd:PRK12650  366 MPFTFVSVTIAALSMAAVPPLFGFVSK 392
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-233 1.06e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 45.71  E-value: 1.06e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597   1 AIIPLISKSHHPRAIEATIKYFLVQATASTLMLFSSMTNAWLTGQWDITQLTH--PTSCLLLTTAIAMKLGLVPFHFWFP 78
Cdd:PRK07234  129 ATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFVSGLWLP 208

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  79 EVLQGS-PMITALLLTTMMK---FPPITILFMTSHTLNPtlLTSMAIASAALGGWMGLNQTQIRKILAFSSISHLGWmti 154
Cdd:PRK07234  209 LTHSEAePPVSALLSGVVVKagvFPLVRCALDVPGLDLI--VRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLGF--- 283

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 155 iIIYSPkltlLTFYLYSLT----TITTFLMLNT----TKTLKLSTMMTSWTKAPmlnatLMLTLLSLAGLPPLTGFLPKW 226
Cdd:PRK07234  284 -ILAAP----LVGGLYALAhglvKSTLFLCAGAlpsrNFTELISQMLGIGKWIP-----LTMASFSIAGFPLLAGFVSKV 353


                  ....*..
gi 1761026597 227 LIIQELT 233
Cdd:PRK07234  354 LTLKNLL 360
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
17-228 1.75e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 45.08  E-value: 1.75e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  17 ATIKYFLVQATASTLMLFSSMTNAWLTG-------QWDITQLTHPTSCLLLT---TAIAMKLGLVPFHFWFPEV-LQGSP 85
Cdd:PRK06473  158 AATKFLLYTAISGILILVSFLGLVWLSGassfdyePLRSHTLPLSTQLLLLApilVGFGIKIPLVPFHTWLPDAhVEAST 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  86 MITALLLTTMMKFPP-------ITILFMTSHTLNPTLLTsMAIASAALGGWMGLNQTQIRKILAFSSISHLGWMTIIIIY 158
Cdd:PRK06473  238 PVSVLLAGVLLKLGTygllrfgVGLFPEAWVYLAPWLAT-WAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAA 316

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 159 SPKLTLL--TFYLYSLTTITTFLML---------NTTKTLKLSTMMTSWTKAPMLNATLMLTLLSLAGLPPLTGFLPKWL 227
Cdd:PRK06473  317 ATPLSILaaVFQMISHGLISALLFLlvgvvykktGSRDVDVLRGLLNPERGLPITGSLMILGVMASAGIPGMVGFIAEFL 396


                  .
gi 1761026597 228 I 228
Cdd:PRK06473  397 V 397
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 73-230 2.80e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 44.56  E-value: 2.80e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  73 FHFWFPEVLQGSPMITALLLTTMMKFPPITILFMTSHTLNPTLLTSMAIA-----SAALGGWMGLNQTQIRKILAFSSIS 147
Cdd:MTH00032  244 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIITifgalTAFFAATVGLVQNDLKKVIAYSTCS 323

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 148 HLGWMTIIIIYSPKLTLLTFYLYSLTTITTFLMLN--------TTKTLKLSTMMTSWTKAPMLNATLMLTLLSLAGLPPL 219
Cdd:MTH00032  324 QLGYMVLIIGIEGSHNVGLFHLVNHAFFKALLFLSagsvihstTVDEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPYL 403

                         170
                  ....*....|.
gi 1761026597 220 TGFLPKWLIIQ 230
Cdd:MTH00032  404 TGFYSKDLILE 414
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 58-229 2.88e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 44.72  E-value: 2.88e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  58 LLLTTAIAMKLGLVPFHFWFPEVLQGSPMITALLL----TTMMKFPPITI--------LFMTSHTLNpTLLTSMAIASAA 125
Cdd:PRK12662  213 LFIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFsgtsTKVMIYLIIRIvydvfkanFVFTTLPFN-NVFMILAALAIV 291

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 126 LGGWMGLNQTQIRKILAFSSISHLGWMTIIIIYSPKLTLLTFYLY----SLTTITTFLMLNTTK----TLKLSTMMTSWT 197
Cdd:PRK12662  292 FGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfgTTKLEDCLNLWK 371

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1761026597 198 KAPMLNATLMLTLLSLAGLPPLTGFLPKWLII 229
Cdd:PRK12662  372 SMPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
13-230 9.11e-05

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 43.10  E-value: 9.11e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  13 RAIEATIKYFLVQATASTLMLFSSMTNAWLTGQWDITQ-----LTHPTS------CLLLTTAIAMKLGLVPFHFWFPEVL 81
Cdd:PRK06277  147 EAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSpviyggLLLLIFGLLYGSGLPPFHTIKSDIY 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  82 QGSPMITALLLTTMMKFPPITILFMTSHTLNP--------TLLTSMAIASAALGGWMGLNQTQIRKILAFSSISHLGWMT 153
Cdd:PRK06277  227 AKAKPFGSALLQTFSKFVLVALMLVIFKLFGGlsyfpsaqGVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVA 306

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 154 IIIIYSPKLTLLT--FYLYSLTTITTFLML------NTTKTLKLSTMMTSWTKAPMLNATLMLTLLSLAGLPPLTGFLPK 225
Cdd:PRK06277  307 AGLALGTPLGIVAgiFHAINHVIYKSALFLgagivsYRTKTSNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSK 386


                  ....*
gi 1761026597 226 WLIIQ 230
Cdd:PRK06277  387 LMLAQ 391
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 15-156 1.16e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 42.82  E-value: 1.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  15 IEATIKYFLVQATA------STLMLFSSMTNAWLTGQWDITQLTHPT----------SCLLLTTAIAMKLGLVPFHFWFP 78
Cdd:PRK08676  151 IDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNWTELAAHAsllspsvlgaSFLFIFIGFLAKSGLVPFHTWLP 230

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  79 EVLQGSP-MITALLLTTMMKFPPITILFMTS-------HTLNPTLLTSMAIASAALGGWMGLNQTQIRKILAFSSISHLG 150
Cdd:PRK08676  231 AAYAKAPsVVSALLSGTVLNIGIYGILRLSAllrqsgaAEQFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMG 310


                  ....*.
gi 1761026597 151 WMTIII 156
Cdd:PRK08676  311 LMLLGI 316
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 67-236 1.16e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 42.88  E-value: 1.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  67 KLGLVPFHFWFPEVLQGSPMITALLLTTMM----KFPPITILFMTSHTLNPTLLTSM-------AIASAALGGWMGLNQT 135
Cdd:PRK06589  223 KTAIFPVHSWLPAAMVAHYPVSALLHAVIVvktgLFCIYKILLYIFGLSYLQRIFAEfnwlifiPIVSIFYSSLKALKTD 302

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 136 QIRKILAFSSISHLGW--MTIIIIYSPKLTLLTFYL--YSLTTITTFLMLNTTKTLK----LSTMMTSWTKAPMLNATLM 207
Cdd:PRK06589  303 NIKKILAYSTISQLSLalLSAFILTPKALGAAILHLvsHSFAKICLFYSMGSIYSLKkedqVDKLHGTSKSFPLISFIIS 382

                         170       180
                  ....*....|....*....|....*....
gi 1761026597 208 LTLLSLAGLPPLTGFLPKWLIIQELTKQE 236
Cdd:PRK06589  383 ISSLSLIGIPIFSGFISKFLILLAASEQN 411
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 18-230 2.08e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 41.86  E-value: 2.08e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  18 TIKYFLVQATASTLMLfssMTNAWL---TGQWD-------ITQLTHPTSCLLLTTAI------AMKLGLVPFHFWFPEVL 81
Cdd:PRK07691  160 SIKYVLINVVSSAFFV---VAVAILysvVGTLNmadisvkIAELSAGQTGLITVVAIlflfvfATKAGLFPLYFWLPGSY 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  82 QGSPM-ITAL---LLTTMMKFPPI---TILFMTSHTLNPTLLTSMAIASAALGGWMGLNQTQIRKILAFSSISHLGWMTI 154
Cdd:PRK07691  237 YAPPIaIAALfgaLLTKVGVYAIArtfTLFFSHDTSFTHYLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILV 316

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 155 -IIIYSPK-LTLLTFYLYSLTTITTFL------MLNTTKTLKLSTMMTSWTKAPMLNATLMLTLLSLAGLPPLTGFLPKW 226
Cdd:PRK07691  317 gVAMMTESgMIGAIYYLIHDMIVKAALflligiMIKITGTTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKF 396


                  ....
gi 1761026597 227 LIIQ 230
Cdd:PRK07691  397 FIVE 400
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 58-234 3.00e-04

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 41.35  E-value: 3.00e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  58 LLLTTAIAMKLGLVPFHFWFPEV-LQGSPMITALLLTTMMKFPPITILFMTSHTLNPTL-----LTSMAIASAALGGWMG 131
Cdd:PRK08042  184 LLGVIGFGLLAGIIPLHGWVPQAhANASAPAAALFSTVVMKIGLLGILTLSLLGGNAPLwwgvaLLVLGMITAFVGGLYA 263

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 132 LNQTQIRKILAFSSISHLG--------WMTIIIIYSPKLTLLTFY--LY-----SLTTITTFL----MLNTTKTLKLSTM 192
Cdd:PRK08042  264 LMEHNIQRLLAYHTLENIGiillglgaGVTGIALEQPALIALGLVggLYhllnhSLFKSVLFLgagsVWFRTGHRDIEKL 343

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1761026597 193 MTSWTKAPMLNATLMLTLLSLAGLPPLTGFLPKWLIIQELTK 234
Cdd:PRK08042  344 GGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQSFFK 385
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 67-230 1.24e-03

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 39.53  E-value: 1.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  67 KLGLVPFHFWFPEVLQGSP-----MITALLLTT----MMKFPPITILFMTSHTLNPtLLTSMAIASAALGGWMGLNQTQI 137
Cdd:PRK06458  227 KVGLFPMHAWLPDAHSEAPspvsaLLSGVLLNValyaVLRYYILIDAAIGSDFPGR-LLLIFGLLSVLVAAFFLLRQRDI 305

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 138 RKILAFSSISHLGWMTIII-IYSPKLT---LLTFYLYSLTTITTFL----MLNTTKTLKLSTMMTSWTKAPMLNATLMLT 209
Cdd:PRK06458  306 KRLFAYSSIEHMGLIAFALgIGGPLGIfaaLLHMLNHSLTKSAIFFasgnVLQKYGTRDINVIRGLLKVSPLTGWGLMLG 385

                         170       180
                  ....*....|....*....|.
gi 1761026597 210 LLSLAGLPPLTGFLPKWLIIQ 230
Cdd:PRK06458  386 ALAIAGMPPFGVFISEFLILT 406
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 63-229 1.26e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 39.52  E-value: 1.26e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  63 AIAMKLGLVPFHFWFPEVLQGSPMITALLLTTM-----------MKFPpitILFMTSHTLNPTLLtSMAIASAALGGWMG 131
Cdd:MTH00226  239 AMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGIllklggyglvrLSWP---ILPLGAQNLAPAVI-AMGIVGIVYGSFAT 314

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 132 LNQTQIRKILAFSSISHLGWMTIIIIYSP--KLTLLTFYLYSLTTITTFL-MLNTTKTLKLSTMMTSWTKA-----PMLN 203
Cdd:MTH00226  315 CRQIDVKRLVAYSSVAHMGLVSITLVTHDiiGLTGSIFIMLAHGIVSSLLfILVTILYDRHHTRLIKYYRGlsitmPIWG 394

                         170       180
                  ....*....|....*....|....*.
gi 1761026597 204 ATLMLTLLSLAGLPPLTGFLPKWLII 229
Cdd:MTH00226  395 TIMIVTSLANVAVPPSGNFIGEYLSI 420
PRK12646 PRK12646
DUF4040 family protein;
72-234 2.30e-03

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 38.97  E-value: 2.30e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  72 PFHFWFPEVLQGSPMITALLLTTMMKFPPITILFMTSHTLNPT-----LLTSMAIASAALGGWMGLNQTQIRKILAFSSI 146
Cdd:PRK12646  228 PFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLFRFTPLLGLSnmyiyIVTFVGLITMLFGSITALKQWDLKGILAYSTI 307

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 147 SHLGW-MTII-----IIYSPKLTLLTFYLYSLTTITTFLM-------------------LNTTKTLKLSTMMTSWtkaPM 201
Cdd:PRK12646  308 SQLGMiMAMVgigggYAQHQQDAIASIYVFVLFAALFHLMnhaifkcalfmgvgiidheAGTRDIRILSGMRQLF---PK 384

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1761026597 202 LNATLMLTLLSLAGLPPLTGFLPKWLIIQELTK 234
Cdd:PRK12646  385 MNLVMTIAALSMAGVPFLNGFLSKEMFLDALTQ 417
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 57-230 2.61e-03

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 38.52  E-value: 2.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  57 CLLLTTAIAMKLGLVPFHFWFPEVLQGSPMITALLLTTMMKFPPITILFMTSHTLNPTLLTSMAIA-----SAALGGWMG 131
Cdd:MTH00020  213 CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLFEQAPLALIIVTivgslTVFFAATVG 292

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 132 LNQTQIRKILAFSSISHLGWMTIIIIYSPKLTLLtFYLYSLTTITTFLMLNTTKTLKLSTMMTSWTKAPMLNATLMLTL- 210
Cdd:MTH00020  293 LVQNDLKKVIAYSTCSQLGYMVVACGLSHYSISL-FHLMNHAFFKALLFLSAGSVIHALSDEQDMRKMGGLISFLPLTYi 371

                         170       180
                  ....*....|....*....|....*.
gi 1761026597 211 ------LSLAGLPPLTGFLPKWLIIQ 230
Cdd:MTH00020  372 ffligsLSLMGFPYLTGFYSKDLILE 397
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 5-229 7.06e-03

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 37.26  E-value: 7.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597   5 LISKSHHPRAIEATIKYFLVQATAS------TLMLFSSMTNAWLTGQWDITQLTHPTSCLLLTTAIAMKLGLVPFHFWFP 78
Cdd:PRK06525  152 LISYYQSPKALRSALKALLITHIGSlglylaAATLFLQTGTFALSALSGLHGSLKYLVFLGILFAAWGKSAQLPFYSWLP 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  79 EVLQGSPMITALLLTTMMKFPPITILFMTSHTLNP------TLLTSMAIASAALGGWMGLNQTQIRKILAFSSISHLGWM 152
Cdd:PRK06525  232 DAMEAPTPASAYLHAASMVKVGVYIFARAIQSMGPiphvigYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYM 311

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597 153 TIII---IYSPKLTLL--TFYLY------SLTTITTFLMLNTTKTLKLSTMMTSWTKAPMLNATLMLTLLSLAGLPPLTG 221
Cdd:PRK06525  312 FFGLslaILGSRLALEgsIAYIFnhafakSLFFLVAGALSYSCGTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNG 391


                  ....*...
gi 1761026597 222 FLPKWLII 229
Cdd:PRK06525  392 FFSKFPIF 399
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
72-152 7.63e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 37.31  E-value: 7.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1761026597  72 PFHFWFPEVLQGSPMITALLLTTMM---------KFPPITILFmtshtlnPTLLTSMAIA---SAALGGWMGLNQTQIRK 139
Cdd:PRK07376  245 PLHVWLPDAMEGPTPISALIHAATMvaagvflvaRMYPVFEQF-------PAVMTVIAWTgaiTAFLGASIALTQNDIKK 317

                          90
                  ....*....|...
gi 1761026597 140 ILAFSSISHLGWM 152
Cdd:PRK07376  318 GLAYSTISQLGYM 330
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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