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Conserved domains on  [gi|1699383860|gb|QDI56757|]
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aliphatic sulfonate ABC transporter permease SsuC [Serratia marcescens]

Protein Classification

ABC transporter permease( domain architecture ID 30)

ABC transporter permease is the transmembrane subunit (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporters which generally bind type 2 PBPs

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TM_PBP2 super family cl00427
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 1-263 1.86e-152

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


The actual alignment was detected with superfamily member PRK11365:

Pssm-ID: 444901  Cd Length: 263  Bit Score: 425.50  E-value: 1.86e-152
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699383860   1 MAKNAQRILYRLAPWALPLALVILWQIAVETGWLSNRILPAPSAVLAAFWSLSQSGELWQHLSISSQRALIGFAIGGSIG 80
Cdd:PRK11365    1 MATPVKKWLLRVAPWFLPVGIVAVWQLASSVGWLSTRILPSPEGVVTAFWTLSASGELWQHLAISSWRALIGFSIGGSLG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699383860  81 LILGFITGLSRWGERLLDSSVQMIRNVPHLALIPLVILWFGIDESAKIFLVALGTLFPIYLNTYHGIKNIDRGLLEMARS 160
Cdd:PRK11365   81 LILGLISGLSRWGERLLDTSIQMLRNVPHLALIPLVILWFGIDESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEMARS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699383860 161 YGLSGFRLFTQVVLPGALPSIMVGVRFALGFMWLTLIVAETISANSGIGYLAMNAREFLQTDVVVVAIVLYALLGKLADV 240
Cdd:PRK11365  161 YGLSGIPLFIHVILPGALPSIMVGVRFALGLMWLTLIVAETISANSGIGYLAMNAREFLQTDVVVVAIILYALLGKLADV 240

                         250       260
                  ....*....|....*....|...
gi 1699383860 241 GAQLLERVWLRWHPAYQLKQGEA 263
Cdd:PRK11365  241 SAQLLERLWLRWNPAYHLKEATV 263
 
Name Accession Description Interval E-value
ssuC PRK11365
aliphatic sulfonate ABC transporter permease SsuC;
1-263 1.86e-152

aliphatic sulfonate ABC transporter permease SsuC;


Pssm-ID: 183100  Cd Length: 263  Bit Score: 425.50  E-value: 1.86e-152
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699383860   1 MAKNAQRILYRLAPWALPLALVILWQIAVETGWLSNRILPAPSAVLAAFWSLSQSGELWQHLSISSQRALIGFAIGGSIG 80
Cdd:PRK11365    1 MATPVKKWLLRVAPWFLPVGIVAVWQLASSVGWLSTRILPSPEGVVTAFWTLSASGELWQHLAISSWRALIGFSIGGSLG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699383860  81 LILGFITGLSRWGERLLDSSVQMIRNVPHLALIPLVILWFGIDESAKIFLVALGTLFPIYLNTYHGIKNIDRGLLEMARS 160
Cdd:PRK11365   81 LILGLISGLSRWGERLLDTSIQMLRNVPHLALIPLVILWFGIDESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEMARS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699383860 161 YGLSGFRLFTQVVLPGALPSIMVGVRFALGFMWLTLIVAETISANSGIGYLAMNAREFLQTDVVVVAIVLYALLGKLADV 240
Cdd:PRK11365  161 YGLSGIPLFIHVILPGALPSIMVGVRFALGLMWLTLIVAETISANSGIGYLAMNAREFLQTDVVVVAIILYALLGKLADV 240

                         250       260
                  ....*....|....*....|...
gi 1699383860 241 GAQLLERVWLRWHPAYQLKQGEA 263
Cdd:PRK11365  241 SAQLLERLWLRWNPAYHLKEATV 263
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 5-253 1.55e-88

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 263.16  E-value: 1.55e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699383860   5 AQRILYRLAPWALPLALVILWQIAVETGWLSNRILPAPSAVLAAFWSLSQSGELWQHLSISSQRALIGFAIGGSIGLILG 84
Cdd:COG0600     6 RRRLRRLLLPLLSLALLLALWELAARLGLVPPFLLPSPSAVLAALVELLASGELWEHLLASLLRVLLGFALAALLGVPLG 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699383860  85 FITGLSRWGERLLDSSVQMIRNVPHLALIPLVILWFGIDESAKIFLVALGTLFPIYLNTYHGIKNIDRGLLEMARSYGLS 164
Cdd:COG0600    86 LLLGLSRLLRRLLDPLLVFLRPIPPLALAPLLILWFGIGEASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGAS 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699383860 165 GFRLFTQVVLPGALPSIMVGVRFALGFMWLTLIVAETISANSGIGYLAMNAREFLQTDVVVVAIVLYALLGKLADVGAQL 244
Cdd:COG0600   166 RWQILRKVVLPAALPYIFTGLRIALGLAWIGLVVAELLGASSGLGYLILDARQLLDTDLVFAAILVIGLLGLLLDLLLRL 245


                  ....*....
gi 1699383860 245 LERVWLRWH 253
Cdd:COG0600   246 LERRLLRWR 254
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 80-247 1.80e-18

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 80.42  E-value: 1.80e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699383860  80 GLILGFITGL--SRWGERLLDSSVQMIRNVPHLALIPLVIL-----WFGIDESAKIFLVALGTLFPIYLNTYHGIKNIDR 152
Cdd:pfam00528   1 GIPLGIIAALrrGRRLDRLLRPLIDLLQALPSFVLAILLVViailsILGHGILPAIILALLGWAGYARLIRRAALRSLPS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699383860 153 GLLEMARSYGLSGFRLFTQVVLPGALPSIMVGVRFALGFMWLTLIVAETISANSGIGYLAMNAREFLQTDV----VVVAI 228
Cdd:pfam00528  81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEiqgpVLAAA 160

                         170
                  ....*....|....*....
gi 1699383860 229 VLYALLGKLADVGAQLLER 247
Cdd:pfam00528 161 LILLLLNLLVDILQRLLDP 179
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 62-237 1.38e-13

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 67.30  E-value: 1.38e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699383860  62 LSISSQRALIGFAIGGSIGLILGFITGLSR-WGERLLDSSVQMIRNVPHLALIPLVILWFGIDESAKIF---------LV 131
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRgKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILpglglpaliLA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699383860 132 ALGTLFPIYLNTYHGIKNIDRGLLEMARSYGLSGFRLFTQVVLPGALPSIMVGVRFALGFMWLTLIVAETISANS----G 207
Cdd:cd06261    81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEapgpG 160

                         170       180       190
                  ....*....|....*....|....*....|
gi 1699383860 208 IGYLAMNAREFLQTDVVVVAIVLYALLGKL 237
Cdd:cd06261   161 TGLLLIFAILFPGDLGVAAAVALILLLLSL 190
 
Name Accession Description Interval E-value
ssuC PRK11365
aliphatic sulfonate ABC transporter permease SsuC;
1-263 1.86e-152

aliphatic sulfonate ABC transporter permease SsuC;


Pssm-ID: 183100  Cd Length: 263  Bit Score: 425.50  E-value: 1.86e-152
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699383860   1 MAKNAQRILYRLAPWALPLALVILWQIAVETGWLSNRILPAPSAVLAAFWSLSQSGELWQHLSISSQRALIGFAIGGSIG 80
Cdd:PRK11365    1 MATPVKKWLLRVAPWFLPVGIVAVWQLASSVGWLSTRILPSPEGVVTAFWTLSASGELWQHLAISSWRALIGFSIGGSLG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699383860  81 LILGFITGLSRWGERLLDSSVQMIRNVPHLALIPLVILWFGIDESAKIFLVALGTLFPIYLNTYHGIKNIDRGLLEMARS 160
Cdd:PRK11365   81 LILGLISGLSRWGERLLDTSIQMLRNVPHLALIPLVILWFGIDESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEMARS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699383860 161 YGLSGFRLFTQVVLPGALPSIMVGVRFALGFMWLTLIVAETISANSGIGYLAMNAREFLQTDVVVVAIVLYALLGKLADV 240
Cdd:PRK11365  161 YGLSGIPLFIHVILPGALPSIMVGVRFALGLMWLTLIVAETISANSGIGYLAMNAREFLQTDVVVVAIILYALLGKLADV 240

                         250       260
                  ....*....|....*....|...
gi 1699383860 241 GAQLLERVWLRWHPAYQLKQGEA 263
Cdd:PRK11365  241 SAQLLERLWLRWNPAYHLKEATV 263
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 5-253 1.55e-88

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 263.16  E-value: 1.55e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699383860   5 AQRILYRLAPWALPLALVILWQIAVETGWLSNRILPAPSAVLAAFWSLSQSGELWQHLSISSQRALIGFAIGGSIGLILG 84
Cdd:COG0600     6 RRRLRRLLLPLLSLALLLALWELAARLGLVPPFLLPSPSAVLAALVELLASGELWEHLLASLLRVLLGFALAALLGVPLG 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699383860  85 FITGLSRWGERLLDSSVQMIRNVPHLALIPLVILWFGIDESAKIFLVALGTLFPIYLNTYHGIKNIDRGLLEMARSYGLS 164
Cdd:COG0600    86 LLLGLSRLLRRLLDPLLVFLRPIPPLALAPLLILWFGIGEASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGAS 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699383860 165 GFRLFTQVVLPGALPSIMVGVRFALGFMWLTLIVAETISANSGIGYLAMNAREFLQTDVVVVAIVLYALLGKLADVGAQL 244
Cdd:COG0600   166 RWQILRKVVLPAALPYIFTGLRIALGLAWIGLVVAELLGASSGLGYLILDARQLLDTDLVFAAILVIGLLGLLLDLLLRL 245


                  ....*....
gi 1699383860 245 LERVWLRWH 253
Cdd:COG0600   246 LERRLLRWR 254
PRK10160 PRK10160
taurine ABC transporter permease TauC;
19-257 5.83e-42

taurine ABC transporter permease TauC;


Pssm-ID: 182276  Cd Length: 275  Bit Score: 144.54  E-value: 5.83e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699383860  19 LALVILWQIAVETGWLSNRILPAPSAVLAAFWSLSQS-----GELWQHLSISSQRALIGFAIGGSIGLILGFITGLSRWG 93
Cdd:PRK10160   32 AVLLAVWWAVAALQLISPLFLPPPQQVLAKLLTIAGPqgfmdATLWQHLAASLTRIVLALLAAVVIGIPVGIAMGLSPTV 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699383860  94 ERLLDSSVQMIRNVPHLALIPLVILWFGIDESAKIFLVALGTLFPIYLNTYHGIKNIDRGLLEMARSYGLSGFRLFTQVV 173
Cdd:PRK10160  112 RGILDPLIELYRPVPPLAYLPLMVIWFGIGETSKILLIYLAIFAPVAMSALAGVKSAQQVRIRAAQSLGASRAQVLWFVI 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699383860 174 LPGALPSIMVGVRFALGFMWLTLIVAETISANSGIGYLAMNAREFLQTDVVVVAIVLYALLGKLADVGAQLLERVWLRWH 253
Cdd:PRK10160  192 LPGALPEILTGLRIGLGVGWSTLVAAELIAATRGLGFMVQSAGEFLATDVVLAGIAVIAIIAFLLELGLRALQRRLTPWH 271


                  ....
gi 1699383860 254 PAYQ 257
Cdd:PRK10160  272 GEVQ 275
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 58-252 1.95e-20

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 86.26  E-value: 1.95e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699383860  58 LWQHLSISsqraLIGFAIGGSIGLILGFITGLSRWGERLLDSSVQMIRNVPHLALIPLVILWFGIDESAKIFLVALGTLF 137
Cdd:COG1174    20 LLEHLLLV----LLALLIALLIAVPLGILITRRRRLAGLVLGVANILQTIPSLALLALLIPLLGIGPAPAIIALVLYALL 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699383860 138 PIYLNTYHGIKNIDRGLLEMARSYGLSGFRLFTQVVLPGALPSIMVGVRFALGFMWLTLIVAETISAnSGIGYLAMNARE 217
Cdd:COG1174    96 PILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAGIRTAAVQNIGTATLAALIGA-GGLGDLIFDGLQ 174

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1699383860 218 FLQTDVVVVAIVLYALLGKLADVGAQLLERVWLRW 252
Cdd:COG1174   175 LNNTALILAGAILVALLALLVDLLLALLERLLTPR 209
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 80-247 1.80e-18

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 80.42  E-value: 1.80e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699383860  80 GLILGFITGL--SRWGERLLDSSVQMIRNVPHLALIPLVIL-----WFGIDESAKIFLVALGTLFPIYLNTYHGIKNIDR 152
Cdd:pfam00528   1 GIPLGIIAALrrGRRLDRLLRPLIDLLQALPSFVLAILLVViailsILGHGILPAIILALLGWAGYARLIRRAALRSLPS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699383860 153 GLLEMARSYGLSGFRLFTQVVLPGALPSIMVGVRFALGFMWLTLIVAETISANSGIGYLAMNAREFLQTDV----VVVAI 228
Cdd:pfam00528  81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEiqgpVLAAA 160

                         170
                  ....*....|....*....
gi 1699383860 229 VLYALLGKLADVGAQLLER 247
Cdd:pfam00528 161 LILLLLNLLVDILQRLLDP 179
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 62-237 1.38e-13

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 67.30  E-value: 1.38e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699383860  62 LSISSQRALIGFAIGGSIGLILGFITGLSR-WGERLLDSSVQMIRNVPHLALIPLVILWFGIDESAKIF---------LV 131
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRgKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILpglglpaliLA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699383860 132 ALGTLFPIYLNTYHGIKNIDRGLLEMARSYGLSGFRLFTQVVLPGALPSIMVGVRFALGFMWLTLIVAETISANS----G 207
Cdd:cd06261    81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEapgpG 160

                         170       180       190
                  ....*....|....*....|....*....|
gi 1699383860 208 IGYLAMNAREFLQTDVVVVAIVLYALLGKL 237
Cdd:cd06261   161 TGLLLIFAILFPGDLGVAAAVALILLLLSL 190
COG4986 COG4986
ABC-type anion transport system, duplicated permease component [Inorganic ion transport and ...
 19-203 8.42e-07

ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism];


Pssm-ID: 444010 [Multi-domain]  Cd Length: 576  Bit Score: 49.46  E-value: 8.42e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699383860  19 LALVILWQIAVETGWLSNRILpapsAVLAAFWSLSQSGELWQHLSISSQRALIGFAIGGSIGLILGFITGLSRWGERLLD 98
Cdd:COG4986   332 LDRLWLALLALLVLYGLWRLL----LFLLTEVGLSEVLHVFLLGLLTLLRVVVLIALASLIWVPVGVWIGLRPRLARRLQ 407

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699383860  99 SSVQMIRNVPHLALIPLVILW---FGID-ESAKIFLVALGTLFPIYLNTYHGIKNIDRGLLEMARSYGLSGFRLFTQVVL 174
Cdd:COG4986   408 PVAQFLASFPANLLFPVAVLLivrFGLNpNIWLSPLMILGTQWYILFNVIAGASAIPNDLREAARNFGLRGWLWWRRLIL 487

                         170       180
                  ....*....|....*....|....*....
gi 1699383860 175 PGALPSIMVGVRFALGFMWLTLIVAETIS 203
Cdd:COG4986   488 PGIFPYYVTGAITASGGAWNASIVAEYVS 516
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
112-230 3.54e-06

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 47.39  E-value: 3.54e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699383860 112 LIPLVILwFGIDESAKIFLVALGTLFPIYLNTYHGIKNIDRGLLEMARSYGLSGFRLFTQVVLPGALPSIMVGVRFALGF 191
Cdd:PRK10952  197 LVPIVML-FGIGNVPGVVVTIIFALPPIVRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLML 275

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1699383860 192 MWLTLIVAETISANS-------GIGYLAMNAREFLQTDVVVVAIVL 230
Cdd:PRK10952  276 ALSMVVIASMIAVGGlgqmvlrGIGRLDMGLATVGGVGIVILAIIL 321
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 150-184 4.12e-04

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 40.76  E-value: 4.12e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1699383860 150 IDRGLLEMARSYGLSGFRLFTQVVLPGALPSIMVG 184
Cdd:PRK15050  187 LDARQLEAAASLGASPWRVARRVILPEAWPALAAG 221
COG4986 COG4986
ABC-type anion transport system, duplicated permease component [Inorganic ion transport and ...
 68-213 7.26e-04

ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism];


Pssm-ID: 444010 [Multi-domain]  Cd Length: 576  Bit Score: 40.60  E-value: 7.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699383860  68 RALIGFAIGGSIGLILGFITGLSRWGERLLDSSVQMIRNVPHLALIPLVILWF---------GIdESAKIFLVALGTLFP 138
Cdd:COG4986    69 RMFAALAASLLFTFVYATLAAKSRRAEKILIPLLDILQSVPVLGFLSFTVTFFialfpgsllGV-ELAAIFAIFTSQAWN 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699383860 139 IYLNTYHGIKNIDRGLLEMARSYGLSGFRLFTQVVLPGALPSI----MVGvrFALGfmWLTLIVAETISANS------GI 208
Cdd:COG4986   148 MAFSFYQSLRTVPRDLDEAARIFRLSGWQRFWRLELPFAMPGLvwnsMMS--MSGG--WFFLVASEAISVGNqdirlpGI 223


                  ....*.
gi 1699383860 209 G-YLAM 213
Cdd:COG4986   224 GsYLAL 229
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 69-182 8.76e-04

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 39.67  E-value: 8.76e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699383860  69 ALIGFAIGGSIGLILGFI-TGLSRWGERLLDSSVQMIRNVPhlALIPLVILWF-----GIDESAkiFLVALGTLFpIYLN 142
Cdd:COG0765    26 TVLAIVLGLVLGLLLALArLSPNPVLRWLATAYVEFFRGTP--LLVQLFFIYFglpllGIDLSP--FVAAVIALT-LNSA 100

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1699383860 143 TYH------GIKNIDRGLLEMARSYGLSGFRLFTQVVLPGALPSIM 182
Cdd:COG0765   101 AYLaeivraGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIIL 146
PRK15069 PRK15069
histidine ABC transporter permease HisM;
147-178 1.12e-03

histidine ABC transporter permease HisM;


Pssm-ID: 185029 [Multi-domain]  Cd Length: 234  Bit Score: 39.26  E-value: 1.12e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1699383860 147 IKNIDRGLLEMARSYGLSGFRLFTQVVLPGAL 178
Cdd:PRK15069  125 IRSVPHGEIEAARAYGMSTFKLYRRIILPSAL 156
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
15-192 5.51e-03

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 37.83  E-value: 5.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699383860  15 WALPLALVILWQIAVETGWLSNRILPApSAVLAAFWSLSQSGELWQHLSISSQRALIGFAIGGSIGLILGFITGLSR-WG 93
Cdd:COG1178   294 CLLLVLLGLLLPLLALLLWSLTKALDD-NLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRgRL 372

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699383860  94 ERLLDSSVQMIRNVPH----LALIPLVILWFGIDESAKIFLVALGTL---FPI-YLNTYHGIKNIDRGLLEMARSYGLSG 165
Cdd:COG1178   373 ARLLDRLAMLPYAVPGivlgLGLLLLFNRPLPLLLYGTLAILVLAYVvrfLPFaLRSLEAALAQIDPSLEEAARSLGASP 452

                         170       180
                  ....*....|....*....|....*..
gi 1699383860 166 FRLFTQVVLPGALPSIMVGvrFALGFM 192
Cdd:COG1178   453 LRTLRRVTLPLLRPGLLAA--ALLVFV 477
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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