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Conserved domains on  [gi|1607460585|gb|QBU42401|]
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flagellar biosynthesis protein FlhB [Bordetella pertussis]

Protein Classification

EscU/YscU/HrcU family type III secretion system export apparatus switch protein( domain architecture ID 10006226)

EscU/YscU/HrcU family type III secretion system export apparatus switch protein similar to Bacillus subtilis uncharacterized protein YlqH

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YlqH COG2257
Type III secretion system substrate exporter, FlhB-like [Intracellular trafficking, secretion, ...
 18-99 1.30e-39

Type III secretion system substrate exporter, FlhB-like [Intracellular trafficking, secretion, and vesicular transport];


:

Pssm-ID: 441858 [Multi-domain]  Cd Length: 95  Bit Score: 126.84  E-value: 1.30e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607460585  18 RPVAVALSYDGGE-AAPRVVAKGYGQLADTIVRTAREHGLHVHESRELVGLLMQVDLDAHIPPQLYTAVAELLAWLYRLE 96
Cdd:COG2257     8 RKKAVALKYDGEKdNAPKVVAKGKGELAEKIIELAKEHGVPVHEDPELVELLSQLDLGDEIPPELYQAVAEILAFIYRLD 87


                  ...
gi 1607460585  97 ARE 99
Cdd:COG2257    88 GKA 90
 
Name Accession Description Interval E-value
YlqH COG2257
Type III secretion system substrate exporter, FlhB-like [Intracellular trafficking, secretion, ...
 18-99 1.30e-39

Type III secretion system substrate exporter, FlhB-like [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441858 [Multi-domain]  Cd Length: 95  Bit Score: 126.84  E-value: 1.30e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607460585  18 RPVAVALSYDGGE-AAPRVVAKGYGQLADTIVRTAREHGLHVHESRELVGLLMQVDLDAHIPPQLYTAVAELLAWLYRLE 96
Cdd:COG2257     8 RKKAVALKYDGEKdNAPKVVAKGKGELAEKIIELAKEHGVPVHEDPELVELLSQLDLGDEIPPELYQAVAEILAFIYRLD 87


                  ...
gi 1607460585  97 ARE 99
Cdd:COG2257    88 GKA 90
flhB_rel TIGR00789
flhB C-terminus-related protein; This model describes a short protein (80-93 residues) ...
 21-96 9.42e-23

flhB C-terminus-related protein; This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set. [Unknown function, General]


Pssm-ID: 129871 [Multi-domain]  Cd Length: 82  Bit Score: 84.03  E-value: 9.42e-23
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1607460585  21 AVALSYD-GGEAAPRVVAKGYGQLADTIVRTAREHGLHVHESRELVGLLMQVDLDAHIPPQLYTAVAELLAWLYRLE 96
Cdd:TIGR00789   5 AVALSYDtGKDKAPKVVASGVGEVAERIIEIAKKHGIPIVEDPDLVDVLLKLDLDDEIPEELYEVVAEIFAFLYTQD 81
flhB PRK05702
flagellar type III secretion system protein FlhB;
21-98 4.24e-20

flagellar type III secretion system protein FlhB;


Pssm-ID: 235569  Cd Length: 359  Bit Score: 82.89  E-value: 4.24e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607460585  21 AVALSYDGGE-AAPRVVAKGYGQLADTIVRTAREHGLHVHESRELV-GLLMQVDLDAHIPPQLYTAVAELLAWLYRLEAR 98
Cdd:PRK05702  274 AVALKYDRGKmAAPVVVAKGVDEVALKIREIAREHNVPIVENPPLArALYATVEIGQEIPEELYKAVAEVLAYVYQLKRW 353
Bac_export_2 pfam01312
FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, ...
 20-92 2.65e-19

FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.


Pssm-ID: 460157  Cd Length: 338  Bit Score: 80.56  E-value: 2.65e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1607460585  20 VAVALSYDGGEA-APRVVAKGYGQLADTIVRTAREHGLHVHESRELV-GLLMQVDLDAHIPPQLYTAVAELLAWL 92
Cdd:pfam01312 264 YAVALKYDPGKMpAPVVVAKGADELALRIREIAREHGVPIVENPPLArALYATVEVGQEIPEELYQAVAEVLAYV 338
 
Name Accession Description Interval E-value
YlqH COG2257
Type III secretion system substrate exporter, FlhB-like [Intracellular trafficking, secretion, ...
 18-99 1.30e-39

Type III secretion system substrate exporter, FlhB-like [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441858 [Multi-domain]  Cd Length: 95  Bit Score: 126.84  E-value: 1.30e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607460585  18 RPVAVALSYDGGE-AAPRVVAKGYGQLADTIVRTAREHGLHVHESRELVGLLMQVDLDAHIPPQLYTAVAELLAWLYRLE 96
Cdd:COG2257     8 RKKAVALKYDGEKdNAPKVVAKGKGELAEKIIELAKEHGVPVHEDPELVELLSQLDLGDEIPPELYQAVAEILAFIYRLD 87


                  ...
gi 1607460585  97 ARE 99
Cdd:COG2257    88 GKA 90
flhB_rel TIGR00789
flhB C-terminus-related protein; This model describes a short protein (80-93 residues) ...
 21-96 9.42e-23

flhB C-terminus-related protein; This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set. [Unknown function, General]


Pssm-ID: 129871 [Multi-domain]  Cd Length: 82  Bit Score: 84.03  E-value: 9.42e-23
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1607460585  21 AVALSYD-GGEAAPRVVAKGYGQLADTIVRTAREHGLHVHESRELVGLLMQVDLDAHIPPQLYTAVAELLAWLYRLE 96
Cdd:TIGR00789   5 AVALSYDtGKDKAPKVVASGVGEVAERIIEIAKKHGIPIVEDPDLVDVLLKLDLDDEIPEELYEVVAEIFAFLYTQD 81
FlhB COG1377
Flagellar biosynthesis protein FlhB [Cell motility];
20-97 3.99e-22

Flagellar biosynthesis protein FlhB [Cell motility];


Pssm-ID: 440987  Cd Length: 352  Bit Score: 88.25  E-value: 3.99e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607460585  20 VAVALSYDGGE-AAPRVVAKGYGQLADTIVRTAREHGLHVHESRELV-GLLMQVDLDAHIPPQLYTAVAELLAWLYRLEA 97
Cdd:COG1377   273 YAVALKYDPGKmGAPVVVAKGADEVALRIREIAREHGVPIVENPPLArALYATVEVGQEIPEELYQAVAEVLAYVYQLKR 352
flhB PRK05702
flagellar type III secretion system protein FlhB;
21-98 4.24e-20

flagellar type III secretion system protein FlhB;


Pssm-ID: 235569  Cd Length: 359  Bit Score: 82.89  E-value: 4.24e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607460585  21 AVALSYDGGE-AAPRVVAKGYGQLADTIVRTAREHGLHVHESRELV-GLLMQVDLDAHIPPQLYTAVAELLAWLYRLEAR 98
Cdd:PRK05702  274 AVALKYDRGKmAAPVVVAKGVDEVALKIREIAREHNVPIVENPPLArALYATVEIGQEIPEELYKAVAEVLAYVYQLKRW 353
Bac_export_2 pfam01312
FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, ...
 20-92 2.65e-19

FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.


Pssm-ID: 460157  Cd Length: 338  Bit Score: 80.56  E-value: 2.65e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1607460585  20 VAVALSYDGGEA-APRVVAKGYGQLADTIVRTAREHGLHVHESRELV-GLLMQVDLDAHIPPQLYTAVAELLAWL 92
Cdd:pfam01312 264 YAVALKYDPGKMpAPVVVAKGADELALRIREIAREHGVPIVENPPLArALYATVEVGQEIPEELYQAVAEVLAYV 338
PRK12772 PRK12772
fused FliR family export protein/FlhB family type III secretion system protein;
20-98 2.84e-13

fused FliR family export protein/FlhB family type III secretion system protein;


Pssm-ID: 237199 [Multi-domain]  Cd Length: 609  Bit Score: 63.93  E-value: 2.84e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607460585  20 VAVALSY-DGGEAAPRVVAKGYGQLADTIVRTAREHGLHVHESRELVGLLM-QVDLDAHIPPQLYTAVAELLAWLYRLEA 97
Cdd:PRK12772  529 IAVALKYeEGKDEAPKVVAKGADYVALKIKEIAKENDVPIIENKPLARLIYkKVEIDQEIPQDMYQAVAEILAIVYKLKK 608


                  .
gi 1607460585  98 R 98
Cdd:PRK12772  609 K 609
flhB PRK12468
flagellar biosynthesis protein FlhB; Reviewed
 21-107 2.17e-11

flagellar biosynthesis protein FlhB; Reviewed


Pssm-ID: 171522  Cd Length: 386  Bit Score: 58.89  E-value: 2.17e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1607460585  21 AVALSY-DGGEAAPRVVAKGYGQLADTIVRTAREHGLHVHESRELV-GLLMQVDLDAHIPPQLYTAVAELLAWLYRLEAR 98
Cdd:PRK12468  274 AVALQYnESKMSAPKVLAKGAGAVALRIRELGAEHRIPLLEAPPLArALFRHSEVGQHIPATLYAAVAEVLAWVYQLKRW 353


                  ....*....
gi 1607460585  99 ELPEALAPR 107
Cdd:PRK12468  354 KREGGLIPK 362
flhB PRK12773
flagellar biosynthesis protein FlhB; Reviewed
 21-97 5.72e-10

flagellar biosynthesis protein FlhB; Reviewed


Pssm-ID: 183737  Cd Length: 646  Bit Score: 54.68  E-value: 5.72e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1607460585  21 AVALSYDGG-EAAPRVVAKGYGQLADTIVRTAREHGLHVHESR-ELVGLLMQVDLDAHIPPQLYTAVAELLAwlyRLEA 97
Cdd:PRK12773  566 AVALEYKPGiHKAPIVIAKGVDDFALLIIRIARENGVPTVEDRlQARGLYEEVELGAEVPQQFYRAIATILS---RLES 641
flhB PRK13109
flagellar biosynthesis protein FlhB; Reviewed
 21-93 3.70e-07

flagellar biosynthesis protein FlhB; Reviewed


Pssm-ID: 183864  Cd Length: 358  Bit Score: 46.72  E-value: 3.70e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1607460585  21 AVALSYDGGE-AAPRVVAKGYGQLADTIVRTAREHGLHVHESRELV-GLLMQVDLDAHIPPQLYTAVAELLAWLY 93
Cdd:PRK13109  276 AIALRYERSEnPAPLVVAKGQDLIALKIREIAEENGIPVIEDKPLArSLYDAVQVDQVIPAEFYRPVAQILYFLF 350
PRK12721 PRK12721
EscU/YscU/HrcU family type III secretion system export apparatus switch protein;
20-89 7.37e-06

EscU/YscU/HrcU family type III secretion system export apparatus switch protein;


Pssm-ID: 183700  Cd Length: 349  Bit Score: 42.74  E-value: 7.37e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1607460585  20 VAVALSYDGGEAA-PRVVAKGYGQLADTIVRTAREHGLHVHESRELV-GLLMQVDLDAHIPPQLYTAVAELL 89
Cdd:PRK12721  266 IAVCLYYHPGETPlPRVLEKGKDAQALHIVKLAERNGIPVVENIPLArALFKEVECGDYIPETLFEPVAALL 337
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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