|
Name |
Accession |
Description |
Interval |
E-value |
| PRK09409 |
PRK09409 |
IS2 transposase TnpB; Reviewed |
126-423 |
0e+00 |
|
IS2 transposase TnpB; Reviewed
Pssm-ID: 181829 [Multi-domain] Cd Length: 301 Bit Score: 605.17 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 126 AHAPLLPGMGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDG 205
Cdd:PRK09409 4 ARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 206 MPAINAKRVYRIMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVT 285
Cdd:PRK09409 84 MPAINAKRVYRIMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVT 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 286 TGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRD 365
Cdd:PRK09409 164 TGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRD 243
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1586113019 366 YISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI 423
Cdd:PRK09409 244 YISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI 301
|
|
| transpos_IS3 |
NF033516 |
IS3 family transposase; |
31-406 |
1.95e-96 |
|
IS3 family transposase;
Pssm-ID: 468052 [Multi-domain] Cd Length: 369 Bit Score: 293.32 E-value: 1.95e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 31 QEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAaGEQVVPaseLAAAMKQIKELQRLLGKKTMENE 110
Cdd:NF033516 1 EFKLEAVREVLEGGKSVAEVARELGISPSTLYRWRKKYRGGGEAADA-GRLKEL---LTPEEEENRRLKRELAELRLENE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 111 LLKEAVEYGRAKKWIAH-APLLPGMGVSLVSRCLRVSRAQLHVILRRTddwmdgRRSRHTDDTDVLLRIHHVIGELP-TY 188
Cdd:NF033516 77 ILKKARKLLRPAVKYALiDALRGEYSVRRACRVLGVSRSTYYYWRKRP------PSRRAPDDAELRARIREIFEESRgRY 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 189 GYRRVWALLRRQaeldGMPaINAKRVYRIMRQNALLLERKPAVPP--SKRAHTGRVA---------VKESNQRWCSDGFE 257
Cdd:NF033516 151 GYRRITALLRRE----GIR-VNHKRVYRLMRELGLLARRRRKRRPytTDSGHVHPVApnllnrqftATRPNQVWVTDITY 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 258 FCCDNGeRLRVTFALDCCDREALHWAVTTGgFNSETVQDVMLGAVERRFGndlpSSPVEWLTDNGSCYRANETRQFARML 337
Cdd:NF033516 226 IRTAEG-WLYLAVVLDLFSREIVGWSVSTS-MSAELVLDALEMAIEWRGK----PEGLILHSDNGSQYTSKAYREWLKEH 299
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1586113019 338 GLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREY 406
Cdd:NF033516 300 GITQSMSRPGNCWDNAVAESFFGTLKRECLYRRRFRTLEEARQAIEEYIEFYNHERPHSSLGYLTPAEF 368
|
|
| PRK09413 |
PRK09413 |
IS2 repressor TnpA; Reviewed |
16-135 |
1.42e-77 |
|
IS2 repressor TnpA; Reviewed
Pssm-ID: 181833 Cd Length: 121 Bit Score: 236.24 E-value: 1.42e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 16 MIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQI 95
Cdd:PRK09413 1 MIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQI 80
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1586113019 96 KELQRLLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGMG 135
Cdd:PRK09413 81 KELQRLLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGDG 120
|
|
| Tra5 |
COG2801 |
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons]; |
89-413 |
7.54e-56 |
|
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
Pssm-ID: 442053 [Multi-domain] Cd Length: 309 Bit Score: 186.90 E-value: 7.54e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 89 AAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKWIAHAPLLpgmgvslVSRCLRVSRAQLHVILRRTddwmdgRRSRH 168
Cdd:COG2801 1 ELAEEEELRKEEELLRRLLLLLRLLLLRRRVLRRVSRRRRRLL-------RLLRRRRARSRRRRRLRRP------RSYRA 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 169 TDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAEldgmpAINAKRVYRIMRQNALLLE-RKPAVPPSKRAHTGRVA---- 243
Cdd:COG2801 68 DEDAELLERIKEIFAESPRYGYRRITAELRREGI-----AVNRKRVRRLMRELGLQARrRRKKKYTTYSGHGGPIApnll 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 244 --VKESNQRWCSDGFEFCCDNGeRLRVTFALDCCDREALHWAVTTGgFNSETVQDVMLGAVERRFgndlPSSPVEWLTDN 321
Cdd:COG2801 143 ftATAPNQVWVTDITYIPTAEG-WLYLAAVIDLFSREIVGWSVSDS-MDAELVVDALEMAIERRG----PPKPLILHSDN 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 322 GSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYR 401
Cdd:COG2801 217 GSQYTSKAYQELLKKLGITQSMSRPGNPQDNAFIESFFGTLKYELLYRRRFESLEEAREAIEEYIEFYNHERPHSSLGYL 296
|
330
....*....|..
gi 1586113019 402 SPREYLRQRACN 413
Cdd:COG2801 297 TPAEYEKQLAAA 308
|
|
| InsE |
COG2963 |
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; |
22-118 |
9.21e-22 |
|
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];
Pssm-ID: 442203 [Multi-domain] Cd Length: 93 Bit Score: 88.83 E-value: 9.21e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 22 PEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASElaaamkQIKELQRL 101
Cdd:COG2963 2 SKKRRRYSPEFKAEAVRLVLEGGASVAEVARELGISPSTLYRWVRQYREGGLGGFPGDGRTTPEQA------EIRRLRKE 75
|
90
....*....|....*..
gi 1586113019 102 LGKKTMENELLKEAVEY 118
Cdd:COG2963 76 LRRLEMENDILKKAAAL 92
|
|
| transpos_IS481 |
NF033577 |
IS481 family transposase; null |
125-403 |
4.40e-20 |
|
IS481 family transposase; null
Pssm-ID: 468094 [Multi-domain] Cd Length: 283 Bit Score: 89.57 E-value: 4.40e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 125 IAHAPLLPGMGVSLVSRCLRVSRAQLHVILRRTDDW-MDG--------RRSRHTDDTDVLLRIHHVIGELpTYGYRRVWA 195
Cdd:NF033577 5 LVRLVLEDGWSVREAARRFGISRKTVYKWLKRYRAGgEEGlidrsrrpHRSPRRTSPETEARILALRREL-RLGPRRIAY 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 196 LLRRQAeldgmPAINAKRVYRIMRQNALllERKPAVPPsKRAHTGRVAVKESNQRWCSDGFEFC--CDNGeRLRVTFALD 273
Cdd:NF033577 84 ELERQG-----PGVSRSTVHRILRRHGL--SRLRALDR-KTGKVKRYERAHPGELWHIDIKKLGriPDVG-RLYLHTAID 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 274 CCDREALHWAVTTggFNSETVQDVMLGAVERRfgnDLPSSPVewLTDNGSCYRANET--RQFARMLGLEPKNTAVRSPES 351
Cdd:NF033577 155 DHSRFAYAELYPD--ETAETAADFLRRAFAEH---GIPIRRV--LTDNGSEFRSRAHgfELALAELGIEHRRTRPYHPQT 227
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1586113019 352 NGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSP 403
Cdd:NF033577 228 NGKVERFHRTLKDEFAYARPYESLAELQAALDEWLHHYNHHRPHSALGGKTP 279
|
|
| rve_3 |
pfam13683 |
Integrase core domain; |
337-403 |
8.50e-20 |
|
Integrase core domain;
Pssm-ID: 433402 [Multi-domain] Cd Length: 67 Bit Score: 82.65 E-value: 8.50e-20
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1586113019 337 LGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSP 403
Cdd:pfam13683 1 LGIEISYIAPGKPMQNGLVESFNGTLRDECLNEHLFSSLAEARALLAAWREDYNTERPHSSLGYRTP 67
|
|
| HTH_Tnp_1 |
pfam01527 |
Transposase; Transposase proteins are necessary for efficient DNA transposition. This family ... |
23-102 |
3.20e-16 |
|
Transposase; Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.
Pssm-ID: 426308 [Multi-domain] Cd Length: 75 Bit Score: 73.16 E-value: 3.20e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 23 EKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAageqvvpASELAAAMKQIKELQRLL 102
Cdd:pfam01527 2 KKRRRFSEEFKLRAVKEVLEPGRTVKEVARRHGVSPNTLYQWRRQYEGGMGASPA-------RPRLTALEEENRRLKREL 74
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK09409 |
PRK09409 |
IS2 transposase TnpB; Reviewed |
126-423 |
0e+00 |
|
IS2 transposase TnpB; Reviewed
Pssm-ID: 181829 [Multi-domain] Cd Length: 301 Bit Score: 605.17 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 126 AHAPLLPGMGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDG 205
Cdd:PRK09409 4 ARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 206 MPAINAKRVYRIMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVT 285
Cdd:PRK09409 84 MPAINAKRVYRIMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVT 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 286 TGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRD 365
Cdd:PRK09409 164 TGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRD 243
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1586113019 366 YISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI 423
Cdd:PRK09409 244 YISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI 301
|
|
| PRK14702 |
PRK14702 |
insertion element IS2 transposase InsD; Provisional |
162-423 |
0e+00 |
|
insertion element IS2 transposase InsD; Provisional
Pssm-ID: 237792 [Multi-domain] Cd Length: 262 Bit Score: 548.18 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 162 DGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALLLERKPAVPPSKRAHTGR 241
Cdd:PRK14702 1 DGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALLLERKPAVPPSKRAHTGR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 242 VAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDN 321
Cdd:PRK14702 81 VAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 322 GSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYR 401
Cdd:PRK14702 161 GSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYR 240
|
250 260
....*....|....*....|..
gi 1586113019 402 SPREYLRQRACNGLSDNRCLEI 423
Cdd:PRK14702 241 SPREYLRQRACNGLSDNRCLEI 262
|
|
| transpos_IS3 |
NF033516 |
IS3 family transposase; |
31-406 |
1.95e-96 |
|
IS3 family transposase;
Pssm-ID: 468052 [Multi-domain] Cd Length: 369 Bit Score: 293.32 E-value: 1.95e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 31 QEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAaGEQVVPaseLAAAMKQIKELQRLLGKKTMENE 110
Cdd:NF033516 1 EFKLEAVREVLEGGKSVAEVARELGISPSTLYRWRKKYRGGGEAADA-GRLKEL---LTPEEEENRRLKRELAELRLENE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 111 LLKEAVEYGRAKKWIAH-APLLPGMGVSLVSRCLRVSRAQLHVILRRTddwmdgRRSRHTDDTDVLLRIHHVIGELP-TY 188
Cdd:NF033516 77 ILKKARKLLRPAVKYALiDALRGEYSVRRACRVLGVSRSTYYYWRKRP------PSRRAPDDAELRARIREIFEESRgRY 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 189 GYRRVWALLRRQaeldGMPaINAKRVYRIMRQNALLLERKPAVPP--SKRAHTGRVA---------VKESNQRWCSDGFE 257
Cdd:NF033516 151 GYRRITALLRRE----GIR-VNHKRVYRLMRELGLLARRRRKRRPytTDSGHVHPVApnllnrqftATRPNQVWVTDITY 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 258 FCCDNGeRLRVTFALDCCDREALHWAVTTGgFNSETVQDVMLGAVERRFGndlpSSPVEWLTDNGSCYRANETRQFARML 337
Cdd:NF033516 226 IRTAEG-WLYLAVVLDLFSREIVGWSVSTS-MSAELVLDALEMAIEWRGK----PEGLILHSDNGSQYTSKAYREWLKEH 299
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1586113019 338 GLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREY 406
Cdd:NF033516 300 GITQSMSRPGNCWDNAVAESFFGTLKRECLYRRRFRTLEEARQAIEEYIEFYNHERPHSSLGYLTPAEF 368
|
|
| PRK09413 |
PRK09413 |
IS2 repressor TnpA; Reviewed |
16-135 |
1.42e-77 |
|
IS2 repressor TnpA; Reviewed
Pssm-ID: 181833 Cd Length: 121 Bit Score: 236.24 E-value: 1.42e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 16 MIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQI 95
Cdd:PRK09413 1 MIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQI 80
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1586113019 96 KELQRLLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGMG 135
Cdd:PRK09413 81 KELQRLLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGDG 120
|
|
| Tra5 |
COG2801 |
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons]; |
89-413 |
7.54e-56 |
|
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
Pssm-ID: 442053 [Multi-domain] Cd Length: 309 Bit Score: 186.90 E-value: 7.54e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 89 AAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKWIAHAPLLpgmgvslVSRCLRVSRAQLHVILRRTddwmdgRRSRH 168
Cdd:COG2801 1 ELAEEEELRKEEELLRRLLLLLRLLLLRRRVLRRVSRRRRRLL-------RLLRRRRARSRRRRRLRRP------RSYRA 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 169 TDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAEldgmpAINAKRVYRIMRQNALLLE-RKPAVPPSKRAHTGRVA---- 243
Cdd:COG2801 68 DEDAELLERIKEIFAESPRYGYRRITAELRREGI-----AVNRKRVRRLMRELGLQARrRRKKKYTTYSGHGGPIApnll 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 244 --VKESNQRWCSDGFEFCCDNGeRLRVTFALDCCDREALHWAVTTGgFNSETVQDVMLGAVERRFgndlPSSPVEWLTDN 321
Cdd:COG2801 143 ftATAPNQVWVTDITYIPTAEG-WLYLAAVIDLFSREIVGWSVSDS-MDAELVVDALEMAIERRG----PPKPLILHSDN 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 322 GSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYR 401
Cdd:COG2801 217 GSQYTSKAYQELLKKLGITQSMSRPGNPQDNAFIESFFGTLKYELLYRRRFESLEEAREAIEEYIEFYNHERPHSSLGYL 296
|
330
....*....|..
gi 1586113019 402 SPREYLRQRACN 413
Cdd:COG2801 297 TPAEYEKQLAAA 308
|
|
| InsE |
COG2963 |
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; |
22-118 |
9.21e-22 |
|
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];
Pssm-ID: 442203 [Multi-domain] Cd Length: 93 Bit Score: 88.83 E-value: 9.21e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 22 PEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASElaaamkQIKELQRL 101
Cdd:COG2963 2 SKKRRRYSPEFKAEAVRLVLEGGASVAEVARELGISPSTLYRWVRQYREGGLGGFPGDGRTTPEQA------EIRRLRKE 75
|
90
....*....|....*..
gi 1586113019 102 LGKKTMENELLKEAVEY 118
Cdd:COG2963 76 LRRLEMENDILKKAAAL 92
|
|
| transpos_IS481 |
NF033577 |
IS481 family transposase; null |
125-403 |
4.40e-20 |
|
IS481 family transposase; null
Pssm-ID: 468094 [Multi-domain] Cd Length: 283 Bit Score: 89.57 E-value: 4.40e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 125 IAHAPLLPGMGVSLVSRCLRVSRAQLHVILRRTDDW-MDG--------RRSRHTDDTDVLLRIHHVIGELpTYGYRRVWA 195
Cdd:NF033577 5 LVRLVLEDGWSVREAARRFGISRKTVYKWLKRYRAGgEEGlidrsrrpHRSPRRTSPETEARILALRREL-RLGPRRIAY 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 196 LLRRQAeldgmPAINAKRVYRIMRQNALllERKPAVPPsKRAHTGRVAVKESNQRWCSDGFEFC--CDNGeRLRVTFALD 273
Cdd:NF033577 84 ELERQG-----PGVSRSTVHRILRRHGL--SRLRALDR-KTGKVKRYERAHPGELWHIDIKKLGriPDVG-RLYLHTAID 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 274 CCDREALHWAVTTggFNSETVQDVMLGAVERRfgnDLPSSPVewLTDNGSCYRANET--RQFARMLGLEPKNTAVRSPES 351
Cdd:NF033577 155 DHSRFAYAELYPD--ETAETAADFLRRAFAEH---GIPIRRV--LTDNGSEFRSRAHgfELALAELGIEHRRTRPYHPQT 227
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1586113019 352 NGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSP 403
Cdd:NF033577 228 NGKVERFHRTLKDEFAYARPYESLAELQAALDEWLHHYNHHRPHSALGGKTP 279
|
|
| rve_3 |
pfam13683 |
Integrase core domain; |
337-403 |
8.50e-20 |
|
Integrase core domain;
Pssm-ID: 433402 [Multi-domain] Cd Length: 67 Bit Score: 82.65 E-value: 8.50e-20
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1586113019 337 LGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSP 403
Cdd:pfam13683 1 LGIEISYIAPGKPMQNGLVESFNGTLRDECLNEHLFSSLAEARALLAAWREDYNTERPHSSLGYRTP 67
|
|
| rve |
pfam00665 |
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into ... |
247-349 |
6.40e-19 |
|
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.
Pssm-ID: 459897 [Multi-domain] Cd Length: 98 Bit Score: 81.21 E-value: 6.40e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 247 SNQRWCSDGFEFCCDNGE-RLRVTFALDCCDREALHWAVTTGGfNSETVQDVMLGAVERRFGndlpsSPVEWLTDNGSCY 325
Cdd:pfam00665 1 PNQLWQGDFTYIRIPGGGgKLYLLVIVDDFSREILAWALSSEM-DAELVLDALERAIAFRGG-----VPLIIHSDNGSEY 74
|
90 100
....*....|....*....|....
gi 1586113019 326 RANETRQFARMLGLEPKNTAVRSP 349
Cdd:pfam00665 75 TSKAFREFLKDLGIKPSFSRPGNP 98
|
|
| HTH_Tnp_1 |
pfam01527 |
Transposase; Transposase proteins are necessary for efficient DNA transposition. This family ... |
23-102 |
3.20e-16 |
|
Transposase; Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.
Pssm-ID: 426308 [Multi-domain] Cd Length: 75 Bit Score: 73.16 E-value: 3.20e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 23 EKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAageqvvpASELAAAMKQIKELQRLL 102
Cdd:pfam01527 2 KKRRRFSEEFKLRAVKEVLEPGRTVKEVARRHGVSPNTLYQWRRQYEGGMGASPA-------RPRLTALEEENRRLKREL 74
|
|
| PHA02517 |
PHA02517 |
putative transposase OrfB; Reviewed |
143-416 |
1.72e-14 |
|
putative transposase OrfB; Reviewed
Pssm-ID: 222853 [Multi-domain] Cd Length: 277 Bit Score: 73.36 E-value: 1.72e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 143 LRVSRAQLHVILRRTDDwMDGRRSRHTDDTDVLLRIHHVIGE-LPTYGYRRVWallrRQAELDGMpAINAKRVYRIMRQN 221
Cdd:PHA02517 1 LGIAPSTYYRCQQQRHH-PDKRRARAQHDDWLKSEILRVYDEnHQVYGVRKVW----RQLNREGI-RVARCTVGRLMKEL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 222 ALlleRKPAVPPSKRAHTGRVAVK------------ESNQRWCSDgFEFCCDNGERLRVTFALDCCDREALHWAVTtggF 289
Cdd:PHA02517 75 GL---AGVLRGKKVRTTISRKAVAapdrvnrqfvatRPNQLWVAD-FTYVSTWQGWVYVAFIIDVFARRIVGWRVS---S 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586113019 290 NSETvqDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISI 369
Cdd:PHA02517 148 SMDT--DFVLDALEQALWARGRPGGLIHHSDKGSQYVSLAYTQRLKEAGIRASTGSRGDSYDNAPAESINGLYKAEVIHR 225
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1586113019 370 MPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPRE----YLRQRACNGLS 416
Cdd:PHA02517 226 VSWKNREEVELATLEWVAWYNNRRLHERLGYTPPAEaekaYYASIGNNDVA 276
|
|
| HTH_21 |
pfam13276 |
HTH-like domain; This domain contains a predicted helix-turn-helix suggesting a DNA-binding ... |
186-224 |
1.69e-07 |
|
HTH-like domain; This domain contains a predicted helix-turn-helix suggesting a DNA-binding function.
Pssm-ID: 463824 [Multi-domain] Cd Length: 60 Bit Score: 47.95 E-value: 1.69e-07
10 20 30
....*....|....*....|....*....|....*....
gi 1586113019 186 PTYGYRRVWALLRRQAELdgmpAINAKRVYRIMRQNALL 224
Cdd:pfam13276 19 GTYGYRRITAELRREGGI----RVNRKRVARLMRELGLR 53
|
|
| |
