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Conserved domains on  [gi|317373455|sp|Q9H5V8|]
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RecName: Full=CUB domain-containing protein 1; AltName: Full=Membrane glycoprotein gp140; AltName: Full=Subtractive immunization M plus HEp3-associated 135 kDa protein; Short=SIMA135; AltName: Full=Transmembrane and associated with src kinases; AltName: CD_antigen=CD318; Flags: Precursor

Protein Classification

CUB domain-containing protein( domain architecture ID 1781)

CUB (complement C1r/C1s, Uegf, Bmp1) domain-containing protein

PubMed:  8510165

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CUB super family cl00049
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 225-297 1.41e-03

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


The actual alignment was detected with superfamily member cd00041:

Pssm-ID: 412131 [Multi-domain]  Cd Length: 113  Bit Score: 39.32  E-value: 1.41e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 317373455 225 SVFEGEGSATLMSANYPEGFPEDELMTWQFVVPAHLRASVSFLNFNL---SNCERkeERVEYYIPGSTTNPEVFKL 297
Cdd:cd00041    3 GTLTASTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLessPNCSY--DYLEIYDGPSTSSPLLGRF 76
 
Name Accession Description Interval E-value
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 225-297 1.41e-03

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 39.32  E-value: 1.41e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 317373455 225 SVFEGEGSATLMSANYPEGFPEDELMTWQFVVPAHLRASVSFLNFNL---SNCERkeERVEYYIPGSTTNPEVFKL 297
Cdd:cd00041    3 GTLTASTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLessPNCSY--DYLEIYDGPSTSSPLLGRF 76
 
Name Accession Description Interval E-value
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 225-297 1.41e-03

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 39.32  E-value: 1.41e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 317373455 225 SVFEGEGSATLMSANYPEGFPEDELMTWQFVVPAHLRASVSFLNFNL---SNCERkeERVEYYIPGSTTNPEVFKL 297
Cdd:cd00041    3 GTLTASTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLessPNCSY--DYLEIYDGPSTSSPLLGRF 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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