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Conserved domains on  [gi|75170265|sp|Q9FFN1|]
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RecName: Full=Pentatricopeptide repeat-containing protein At5g03800; AltName: Full=Protein EMBRYO DEFECTIVE 175

Protein Classification

pentatricopeptide repeat-containing protein( domain architecture ID 1000585)

pentatricopeptide repeat (PPR)-containing protein may form anti-parallel alpha helices and bind single-stranded RNA in a sequence-specific and modular manner

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03077 super family cl33629
Protein ECB2; Provisional
 81-894 8.79e-131

Protein ECB2; Provisional


The actual alignment was detected with superfamily member PLN03077:

Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 413.48  E-value: 8.79e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265   81 DGFFYLLRLSAQYHDVEVTKAVHASFLK-LREEKTRLGNALISTYLKLGFPREAILVFVSLSSPTVVSYTALISGFSRLN 159
Cdd:PLN03077  87 DAYVALFRLCEWKRAVEEGSRVCSRALSsHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAG 166

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  160 LEIEALKVFFRMRKAGlVQPNEYTFVAILTACVRVSRFSLGIQIHGLIVKSGFLNSVFVSNSLMSLYDKdsgssCDDVL- 238
Cdd:PLN03077 167 YFDEALCLYHRMLWAG-VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK-----CGDVVs 240

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  239 --KLFDEIPQRDVASWNTVVSSLVKEGKSHKAFDLFYEMnrvEGFGVDS--FTLSTLLSSCTDSSVLLRGRELHGRAIRI 314
Cdd:PLN03077 241 arLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTM---RELSVDPdlMTITSVISACELLGDERLGREMHGYVVKT 317

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  315 GLMQELSVNNALIGFYSKFWDMKKVESLYEMMMAQDAVTFTEMITAYMSFGMVDSAVEIFANvtekntitynalmagfcr 394
Cdd:PLN03077 318 GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYAL------------------ 379

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  395 nghglkalklftdMLQRGVELTDFSLTSAVDACGLVSEKKVSEQIHGFCIKFGTAFNPCIQTALLDMCTRCERMADAEEM 474
Cdd:PLN03077 380 -------------MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV 446

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  475 FDQWPSNldSSKATTSIIGGYARNGLPDKAVSLFHRTLCEQKLflDEVSLTLILAVCGTLGFREMGYQIHCYALKAGYFS 554
Cdd:PLN03077 447 FHNIPEK--DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKP--NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF 522

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  555 DISLGNSLISMYAKCCDSDDAIKIFNTmREHDVISWNSLISCYILQRNGDEALALWSRMNEKEIKPDIITLTLVISAFry 634
Cdd:PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFNS-HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC-- 599

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  635 TESNKLSSCRDLFLSMKTIYDIEPTTEHYTAFVRVLGHWGLLEEAEDTINSMPVQPEVSVLRALLDSCRIHSNTSVAKRV 714
Cdd:PLN03077 600 SRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELA 679

                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  715 AKLILSTKPETPSEYILKSNIYSASGFWHRSEMIREEMRERGYRKHPAKSWIIHENKIHSFHARDTSHPQEKDIYRGLEI 794
Cdd:PLN03077 680 AQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEG 759

                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  795 LIMECLKVGYEPNTEYVLQEvDEFMKKSFLFHHSAKLAVTYGILSSnTRGKPVRVMKNVMLCGDCHEFFKYISVVVKREI 874
Cdd:PLN03077 760 FYEKMKASGLAGSESSSMDE-IEVSKDDIFCGHSERLAIAFGLINT-VPGMPIWVTKNLYMCENCHNTVKFISKIVRREI 837

                        810       820
                 ....*....|....*....|
gi 75170265  875 VLRDSSGFHHFVNGKCSCRD 894
Cdd:PLN03077 838 SVRDTEQFHHFKDGECSCGD 857
 
Name Accession Description Interval E-value
PLN03077 PLN03077
Protein ECB2; Provisional
 81-894 8.79e-131

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 413.48  E-value: 8.79e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265   81 DGFFYLLRLSAQYHDVEVTKAVHASFLK-LREEKTRLGNALISTYLKLGFPREAILVFVSLSSPTVVSYTALISGFSRLN 159
Cdd:PLN03077  87 DAYVALFRLCEWKRAVEEGSRVCSRALSsHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAG 166

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  160 LEIEALKVFFRMRKAGlVQPNEYTFVAILTACVRVSRFSLGIQIHGLIVKSGFLNSVFVSNSLMSLYDKdsgssCDDVL- 238
Cdd:PLN03077 167 YFDEALCLYHRMLWAG-VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK-----CGDVVs 240

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  239 --KLFDEIPQRDVASWNTVVSSLVKEGKSHKAFDLFYEMnrvEGFGVDS--FTLSTLLSSCTDSSVLLRGRELHGRAIRI 314
Cdd:PLN03077 241 arLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTM---RELSVDPdlMTITSVISACELLGDERLGREMHGYVVKT 317

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  315 GLMQELSVNNALIGFYSKFWDMKKVESLYEMMMAQDAVTFTEMITAYMSFGMVDSAVEIFANvtekntitynalmagfcr 394
Cdd:PLN03077 318 GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYAL------------------ 379

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  395 nghglkalklftdMLQRGVELTDFSLTSAVDACGLVSEKKVSEQIHGFCIKFGTAFNPCIQTALLDMCTRCERMADAEEM 474
Cdd:PLN03077 380 -------------MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV 446

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  475 FDQWPSNldSSKATTSIIGGYARNGLPDKAVSLFHRTLCEQKLflDEVSLTLILAVCGTLGFREMGYQIHCYALKAGYFS 554
Cdd:PLN03077 447 FHNIPEK--DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKP--NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF 522

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  555 DISLGNSLISMYAKCCDSDDAIKIFNTmREHDVISWNSLISCYILQRNGDEALALWSRMNEKEIKPDIITLTLVISAFry 634
Cdd:PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFNS-HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC-- 599

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  635 TESNKLSSCRDLFLSMKTIYDIEPTTEHYTAFVRVLGHWGLLEEAEDTINSMPVQPEVSVLRALLDSCRIHSNTSVAKRV 714
Cdd:PLN03077 600 SRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELA 679

                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  715 AKLILSTKPETPSEYILKSNIYSASGFWHRSEMIREEMRERGYRKHPAKSWIIHENKIHSFHARDTSHPQEKDIYRGLEI 794
Cdd:PLN03077 680 AQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEG 759

                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  795 LIMECLKVGYEPNTEYVLQEvDEFMKKSFLFHHSAKLAVTYGILSSnTRGKPVRVMKNVMLCGDCHEFFKYISVVVKREI 874
Cdd:PLN03077 760 FYEKMKASGLAGSESSSMDE-IEVSKDDIFCGHSERLAIAFGLINT-VPGMPIWVTKNLYMCENCHNTVKFISKIVRREI 837

                        810       820
                 ....*....|....*....|
gi 75170265  875 VLRDSSGFHHFVNGKCSCRD 894
Cdd:PLN03077 838 SVRDTEQFHHFKDGECSCGD 857
DYW_deaminase pfam14432
DYW family of nucleic acid deaminases; This is the DYW domain found in nucleic acid deaminases ...
 803-896 8.77e-35

DYW family of nucleic acid deaminases; This is the DYW domain found in nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members containing this domain are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. This domain contains a characteriztic zinc-binding motif (CXXC, HXE) which has been shown to bind zinc ions. This domain is often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems.


Pssm-ID: 464172 [Multi-domain]  Cd Length: 93  Bit Score: 127.54  E-value: 8.77e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265   803 GYEPNTEYVLQEVDEFMKKSFLFHHSAKLAVTYGILSSNtRGKPVRVMKNVMLCGDCHEFFKYISVVVKREIVLRDSSGF 882
Cdd:pfam14432   1 GYVPDLRFVLHDVDDEEKKQLLCGHSEKLALAYGLLTTP-DGATIRITKNLRVCGDCHTAFKYISKIRGREIVVRDASRF 79

                          90
                  ....*....|....
gi 75170265   883 HHFVNGKCSCRDLW 896
Cdd:pfam14432  80 HHFKNGLCSCGDFW 93
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 383-417 9.33e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 43.21  E-value: 9.33e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 75170265   383 ITYNALMAGFCRNGHGLKALKLFTDMLQRGVELTD 417
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
 
Name Accession Description Interval E-value
PLN03077 PLN03077
Protein ECB2; Provisional
 81-894 8.79e-131

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 413.48  E-value: 8.79e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265   81 DGFFYLLRLSAQYHDVEVTKAVHASFLK-LREEKTRLGNALISTYLKLGFPREAILVFVSLSSPTVVSYTALISGFSRLN 159
Cdd:PLN03077  87 DAYVALFRLCEWKRAVEEGSRVCSRALSsHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAG 166

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  160 LEIEALKVFFRMRKAGlVQPNEYTFVAILTACVRVSRFSLGIQIHGLIVKSGFLNSVFVSNSLMSLYDKdsgssCDDVL- 238
Cdd:PLN03077 167 YFDEALCLYHRMLWAG-VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK-----CGDVVs 240

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  239 --KLFDEIPQRDVASWNTVVSSLVKEGKSHKAFDLFYEMnrvEGFGVDS--FTLSTLLSSCTDSSVLLRGRELHGRAIRI 314
Cdd:PLN03077 241 arLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTM---RELSVDPdlMTITSVISACELLGDERLGREMHGYVVKT 317

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  315 GLMQELSVNNALIGFYSKFWDMKKVESLYEMMMAQDAVTFTEMITAYMSFGMVDSAVEIFANvtekntitynalmagfcr 394
Cdd:PLN03077 318 GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYAL------------------ 379

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  395 nghglkalklftdMLQRGVELTDFSLTSAVDACGLVSEKKVSEQIHGFCIKFGTAFNPCIQTALLDMCTRCERMADAEEM 474
Cdd:PLN03077 380 -------------MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV 446

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  475 FDQWPSNldSSKATTSIIGGYARNGLPDKAVSLFHRTLCEQKLflDEVSLTLILAVCGTLGFREMGYQIHCYALKAGYFS 554
Cdd:PLN03077 447 FHNIPEK--DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKP--NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF 522

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  555 DISLGNSLISMYAKCCDSDDAIKIFNTmREHDVISWNSLISCYILQRNGDEALALWSRMNEKEIKPDIITLTLVISAFry 634
Cdd:PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFNS-HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC-- 599

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  635 TESNKLSSCRDLFLSMKTIYDIEPTTEHYTAFVRVLGHWGLLEEAEDTINSMPVQPEVSVLRALLDSCRIHSNTSVAKRV 714
Cdd:PLN03077 600 SRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELA 679

                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  715 AKLILSTKPETPSEYILKSNIYSASGFWHRSEMIREEMRERGYRKHPAKSWIIHENKIHSFHARDTSHPQEKDIYRGLEI 794
Cdd:PLN03077 680 AQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEG 759

                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  795 LIMECLKVGYEPNTEYVLQEvDEFMKKSFLFHHSAKLAVTYGILSSnTRGKPVRVMKNVMLCGDCHEFFKYISVVVKREI 874
Cdd:PLN03077 760 FYEKMKASGLAGSESSSMDE-IEVSKDDIFCGHSERLAIAFGLINT-VPGMPIWVTKNLYMCENCHNTVKFISKIVRREI 837

                        810       820
                 ....*....|....*....|
gi 75170265  875 VLRDSSGFHHFVNGKCSCRD 894
Cdd:PLN03077 838 SVRDTEQFHHFKDGECSCGD 857
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 254-896 1.96e-107

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 347.24  E-value: 1.96e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  254 TVVSSLVKEGKSHKAFDLFyEMNRVEG-FGVDSFTLSTLLSSCtdssvlLRGRELHGRAIRIGLMqelsVNNaliGFYSK 332
Cdd:PLN03081  92 SQIEKLVACGRHREALELF-EILEAGCpFTLPASTYDALVEAC------IALKSIRCVKAVYWHV----ESS---GFEPD 157

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  333 FWDMKKVeslyeMMMaqdavtftemitaYMSFGMVDSAVEIFANVTEKNTITYNALMAGFCRNGHGLKALKLFTDMLQRG 412
Cdd:PLN03081 158 QYMMNRV-----LLM-------------HVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDG 219

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  413 VELTDFSLTSAVDACGLVSEKKVSEQIHGFCIKFGTAFNPCIQTALLDMCTRCERMADAEEMFDQWPSNldSSKATTSII 492
Cdd:PLN03081 220 SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK--TTVAWNSML 297

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  493 GGYARNGLPDKAVSLFHrTLCEQKLFLDEVSLTLILAVCGTLGFREMGYQIHCYALKAGYFSDISLGNSLISMYAKCCDS 572
Cdd:PLN03081 298 AGYALHGYSEEALCLYY-EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRM 376

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  573 DDAIKIFNTMREHDVISWNSLISCYILQRNGDEALALWSRMNEKEIKPDIITLTLVISAFRYteSNKLSSCRDLFLSMKT 652
Cdd:PLN03081 377 EDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY--SGLSEQGWEIFQSMSE 454

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  653 IYDIEPTTEHYTAFVRVLGHWGLLEEAEDTINSMPVQPEVSVLRALLDSCRIHSNTSVAKRVAKLILSTKPETPSEYILK 732
Cdd:PLN03081 455 NHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVL 534

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  733 SNIYSASGFWHRSEMIREEMRERGYRKHPAKSWIIHENKIHSFHARDTSHPQEKDIYRGLEILIMECLKVGYEPNTEYVL 812
Cdd:PLN03081 535 LNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELL 614

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  813 QEVDEFMKKSFLFHHSAKLAVTYGILSSnTRGKPVRVMKNVMLCGDCHEFFKYISVVVKREIVLRDSSGFHHFVNGKCSC 892
Cdd:PLN03081 615 PDVDEDEEKVSGRYHSEKLAIAFGLINT-SEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSC 693


                 ....
gi 75170265  893 RDLW 896
Cdd:PLN03081 694 GDYW 697
DYW_deaminase pfam14432
DYW family of nucleic acid deaminases; This is the DYW domain found in nucleic acid deaminases ...
 803-896 8.77e-35

DYW family of nucleic acid deaminases; This is the DYW domain found in nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members containing this domain are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. This domain contains a characteriztic zinc-binding motif (CXXC, HXE) which has been shown to bind zinc ions. This domain is often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems.


Pssm-ID: 464172 [Multi-domain]  Cd Length: 93  Bit Score: 127.54  E-value: 8.77e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265   803 GYEPNTEYVLQEVDEFMKKSFLFHHSAKLAVTYGILSSNtRGKPVRVMKNVMLCGDCHEFFKYISVVVKREIVLRDSSGF 882
Cdd:pfam14432   1 GYVPDLRFVLHDVDDEEKKQLLCGHSEKLALAYGLLTTP-DGATIRITKNLRVCGDCHTAFKYISKIRGREIVVRDASRF 79

                          90
                  ....*....|....
gi 75170265   883 HHFVNGKCSCRDLW 896
Cdd:pfam14432  80 HHFKNGLCSCGDFW 93
PLN03077 PLN03077
Protein ECB2; Provisional
 375-693 3.85e-27

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 118.80  E-value: 3.85e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  375 ANVTEKNTITYNALMAGFCRNGHGLKALKLFTDMLQRGVELTDFSLTSAVDACGLVSEKKVSEQIHGFCIKFGTAFNPCI 454
Cdd:PLN03077  44 AASSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRL 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  455 QTALLDMCTRCERMADAEEMFDQWPS-NLDSSKAttsIIGGYARNGLPDKAVSLFHRTLCeQKLFLDEVSLTLILAVCGT 533
Cdd:PLN03077 124 GNAMLSMFVRFGELVHAWYVFGKMPErDLFSWNV---LVGGYAKAGYFDEALCLYHRMLW-AGVRPDVYTFPCVLRTCGG 199

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  534 LGFREMGYQIHCYALKAGYFSDISLGNSLISMYAKCCDSDDAIKIFNTMREHDVISWNSLISCYILQRNGDEALALWSRM 613
Cdd:PLN03077 200 IPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTM 279

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  614 NEKEIKPDIITLTLVISAFRYTESNKLSscRDLF-LSMKTIYDIEPT-----TEHYTAfvrvLGHWGlleEAEDTINSMP 687
Cdd:PLN03077 280 RELSVDPDLMTITSVISACELLGDERLG--REMHgYVVKTGFAVDVSvcnslIQMYLS----LGSWG---EAEKVFSRME 350


                 ....*.
gi 75170265  688 VQPEVS 693
Cdd:PLN03077 351 TKDAVS 356
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 83-320 1.48e-19

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 94.17  E-value: 1.48e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265   83 FFYLLRLSAQYHDVEVTKAVHASFLKLRE-EKTRLGNALISTYLKLGFPREAILVFVSLSSPTVVSYTALISGFSRLNLE 161
Cdd:PLN03081 227 FVVMLRASAGLGSARAGQQLHCCVLKTGVvGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYS 306

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  162 IEALKVFFRMRKAGlVQPNEYTFVAILTACVRVSRFSLGIQIHGLIVKSGFLNSVFVSNSLMSLYDKdsGSSCDDVLKLF 241
Cdd:PLN03081 307 EEALCLYYEMRDSG-VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK--WGRMEDARNVF 383

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265  242 DEIPQRDVASWNTVVSSLVKEGKSHKAFDLFYEMnRVEGFGVDSFTLSTLLSSCTDSSVLLRGREL-------HG---RA 311
Cdd:PLN03081 384 DRMPRKNLISWNALIAGYGNHGRGTKAVEMFERM-IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIfqsmsenHRikpRA 462


                 ....*....
gi 75170265  312 IRIGLMQEL 320
Cdd:PLN03081 463 MHYACMIEL 471
E_motif pfam20431
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ...
 705-766 2.53e-11

E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.


Pssm-ID: 466580 [Multi-domain]  Cd Length: 63  Bit Score: 59.86  E-value: 2.53e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 75170265   705 HSNTSVAKRVAKLILSTKPETPSEYILKSNIYSASGFWHRSEMIREEMRERGYRKHPAKSWI 766
Cdd:pfam20431   1 YSNVELAEKAANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKKRPGCSWI 62
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 380-427 4.02e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 55.83  E-value: 4.02e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 75170265   380 KNTITYNALMAGFCRNGHGLKALKLFTDMLQRGVELTDFSLTSAVDAC 427
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 148-408 3.86e-09

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 60.66  E-value: 3.86e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265   148 YTALISGFSRLNlEIEAL-KVFFRMRKAGlVQPNEYTFVAILTACVRvsrfslgiqihglivkSGFLNSVFVSNSLMSly 226
Cdd:PLN03218  475 YTTLISTCAKSG-KVDAMfEVFHEMVNAG-VEANVHTFGALIDGCAR----------------AGQVAKAFGAYGIMR-- 534

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265   227 DKDsgsscddvLKlfdeiPQRDVasWNTVVSSLVKEGKSHKAFDLFYEMnRVEGFGV--DSFTLSTLLSSCTDSSVLLRG 304
Cdd:PLN03218  535 SKN--------VK-----PDRVV--FNALISACGQSGAVDRAFDVLAEM-KAETHPIdpDHITVGALMKACANAGQVDRA 598

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265   305 RELHGRAIRIGLMQELSVNNALIGFYSKFWDMKKVESLYEMM----MAQDAVTFTEMITAYMSFGMVDSAVEIFANVTEK 380
Cdd:PLN03218  599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMkkkgVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678

                         250       260       270
                  ....*....|....*....|....*....|..
gi 75170265   381 N----TITYNALMAGFCRNGHGLKALKLFTDM 408
Cdd:PLN03218  679 GiklgTVSYSSLMGACSNAKNWKKALELYEDI 710
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 586-632 1.11e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 48.90  E-value: 1.11e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 75170265   586 DVISWNSLISCYILQRNGDEALALWSRMNEKEIKPDIITLTLVISAF 632
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 143-193 2.25e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 48.13  E-value: 2.25e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 75170265   143 PTVVSYTALISGFSRLN-LEiEALKVFFRMRKAGlVQPNEYTFVAILTACVR 193
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGkVE-EAFKLFNEMKKRG-VKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 247-295 1.23e-06

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 45.82  E-value: 1.23e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 75170265   247 RDVASWNTVVSSLVKEGKSHKAFDLFYEMNRvEGFGVDSFTLSTLLSSC 295
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKK-RGVKPNVYTYTILINGL 48
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 383-417 9.33e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 43.21  E-value: 9.33e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 75170265   383 ITYNALMAGFCRNGHGLKALKLFTDMLQRGVELTD 417
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 350-394 1.33e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 43.12  E-value: 1.33e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 75170265   350 DAVTFTEMITAYMSFGMVDSAVEIFANVTEK----NTITYNALMAGFCR 394
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRgvkpNVYTYTILINGLCK 50
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 383-413 1.35e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 42.45  E-value: 1.35e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 75170265   383 ITYNALMAGFCRNGHGLKALKLFTDMLQRGV 413
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 381-408 7.17e-05

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 40.41  E-value: 7.17e-05
                          10        20
                  ....*....|....*....|....*...
gi 75170265   381 NTITYNALMAGFCRNGHGLKALKLFTDM 408
Cdd:pfam12854   6 DVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 146-176 1.42e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 39.76  E-value: 1.42e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 75170265   146 VSYTALISGFSRLNLEIEALKVFFRMRKAGL 176
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 588-622 2.22e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 39.36  E-value: 2.22e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 75170265   588 ISWNSLISCYILQRNGDEALALWSRMNEKEIKPDI 622
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 248-427 3.23e-04

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 44.48  E-value: 3.23e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265   248 DVASWNTVVSSLVKEGKSHKAFDLFYEMNrVEGFGVDSFTLSTLLSSCtdssvllrgrelhGRAIRI-------GLMQEl 320
Cdd:PLN03218  471 DCKLYTTLISTCAKSGKVDAMFEVFHEMV-NAGVEANVHTFGALIDGC-------------ARAGQVakafgayGIMRS- 535

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75170265   321 svnnaligfyskfwdmKKVESlyemmmaqDAVTFTEMITAYMSFGMVDSAVEIFANVTEKNT------ITYNALMAGFCR 394
Cdd:PLN03218  536 ----------------KNVKP--------DRVVFNALISACGQSGAVDRAFDVLAEMKAETHpidpdhITVGALMKACAN 591

                         170       180       190
                  ....*....|....*....|....*....|...
gi 75170265   395 NGHGLKALKLFTDMLQRGVELTDFSLTSAVDAC 427
Cdd:PLN03218  592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSC 624
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 560-597 6.93e-04

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 38.11  E-value: 6.93e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 75170265   560 NSLISMYAKCCDSDDAIKIFNTMREH----DVISWNSLISCY 597
Cdd:pfam13041   7 NTLINGYCKKGKVEEAFKLFNEMKKRgvkpNVYTYTILINGL 48
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 143-192 9.93e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 38.11  E-value: 9.93e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 75170265   143 PTVVSYTALISGFSRLNLEIEALKVFFRMRKAGlVQPNEYTFVAILTACV 192
Cdd:pfam13812  13 LNVNTYTHLLHAYANVGNLKLALEIFERMKKKG-IKPTLDTYNAILGVIG 61
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 584-632 9.93e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 38.11  E-value: 9.93e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 75170265   584 EHDVISWNSLISCYILQRNGDEALALWSRMNEKEIKPDIITLTLVISAF 632
Cdd:pfam13812  12 QLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 251-275 2.74e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 35.90  E-value: 2.74e-03
                          10        20
                  ....*....|....*....|....*
gi 75170265   251 SWNTVVSSLVKEGKSHKAFDLFYEM 275
Cdd:pfam01535   2 TYNSLISGYCKNGKLEEALELFKEM 26
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 146-177 4.60e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 35.51  E-value: 4.60e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 75170265   146 VSYTALISGFSRLNLEIEALKVFFRMRKAGLV 177
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIE 32
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 251-285 5.77e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 35.12  E-value: 5.77e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 75170265   251 SWNTVVSSLVKEGKSHKAFDLFYEMnRVEGFGVDS 285
Cdd:TIGR00756   2 TYNTLIDGLCKAGRVEEALELFKEM-KERGIEPDV 35
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 588-618 6.78e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 34.75  E-value: 6.78e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 75170265   588 ISWNSLISCYILQRNGDEALALWSRMNEKEI 618
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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