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Conserved domains on  [gi|81905677|sp|Q9D8P7|]
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RecName: Full=General transcription factor 3C polypeptide 6; AltName: Full=Transcription factor IIIC 35 kDa subunit; Short=TFIIIC 35 kDa subunit; Short=TFIIIC35; AltName: Full=Transcription factor IIIC subunit 6

Protein Classification

TFIIIC subunit 6 family protein( domain architecture ID 10564324)

TFIIIC subunit 6 family protein similar to human transcription factor IIIC subunit 6, also called general transcription factor 3C polypeptide 6 (GTF3C6), and Schizosaccharomyces pombe transcription factor tau subunit sfc7, which are components of the TFIIIC complex

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TFIIIC_sub6 pfam10419
TFIIIC subunit triple barrel domain; This is a family of proteins subunits of TFIIIC. TFIIIC ...
 30-119 4.62e-25

TFIIIC subunit triple barrel domain; This is a family of proteins subunits of TFIIIC. TFIIIC in yeast and humans is required for transcription of tRNA and 5 S RNA genes by RNA polymerase III. Yeast members of this family are fused to phosphoglycerate mutase domain.


:

Pssm-ID: 463085  Cd Length: 91  Bit Score: 94.18  E-value: 4.62e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905677    30 FVLVELSGIIDSDFLSKCENK-CKILGIDTERPIMQVDSYVFAGEYEDTLGTCVIFEEgvervdPEGTDKTVLKYKCHTM 108
Cdd:pfam10419   7 YVTLDLSGPLYSERLPDEEDAtIQILGLDTENPLLQIGGQVYEGEWEETIGTELLFEE------DDDANKKSLELLGKSS 80

                          90
                  ....*....|.
gi 81905677   109 KKLSMTRTLLT 119
Cdd:pfam10419  81 KRLVLTRVFLK 91
 
Name Accession Description Interval E-value
TFIIIC_sub6 pfam10419
TFIIIC subunit triple barrel domain; This is a family of proteins subunits of TFIIIC. TFIIIC ...
 30-119 4.62e-25

TFIIIC subunit triple barrel domain; This is a family of proteins subunits of TFIIIC. TFIIIC in yeast and humans is required for transcription of tRNA and 5 S RNA genes by RNA polymerase III. Yeast members of this family are fused to phosphoglycerate mutase domain.


Pssm-ID: 463085  Cd Length: 91  Bit Score: 94.18  E-value: 4.62e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905677    30 FVLVELSGIIDSDFLSKCENK-CKILGIDTERPIMQVDSYVFAGEYEDTLGTCVIFEEgvervdPEGTDKTVLKYKCHTM 108
Cdd:pfam10419   7 YVTLDLSGPLYSERLPDEEDAtIQILGLDTENPLLQIGGQVYEGEWEETIGTELLFEE------DDDANKKSLELLGKSS 80

                          90
                  ....*....|.
gi 81905677   109 KKLSMTRTLLT 119
Cdd:pfam10419  81 KRLVLTRVFLK 91
 
Name Accession Description Interval E-value
TFIIIC_sub6 pfam10419
TFIIIC subunit triple barrel domain; This is a family of proteins subunits of TFIIIC. TFIIIC ...
 30-119 4.62e-25

TFIIIC subunit triple barrel domain; This is a family of proteins subunits of TFIIIC. TFIIIC in yeast and humans is required for transcription of tRNA and 5 S RNA genes by RNA polymerase III. Yeast members of this family are fused to phosphoglycerate mutase domain.


Pssm-ID: 463085  Cd Length: 91  Bit Score: 94.18  E-value: 4.62e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905677    30 FVLVELSGIIDSDFLSKCENK-CKILGIDTERPIMQVDSYVFAGEYEDTLGTCVIFEEgvervdPEGTDKTVLKYKCHTM 108
Cdd:pfam10419   7 YVTLDLSGPLYSERLPDEEDAtIQILGLDTENPLLQIGGQVYEGEWEETIGTELLFEE------DDDANKKSLELLGKSS 80

                          90
                  ....*....|.
gi 81905677   109 KKLSMTRTLLT 119
Cdd:pfam10419  81 KRLVLTRVFLK 91
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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