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Conserved domains on  [gi|75169981|sp|Q9CAY1|]
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RecName: Full=Putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial; AltName: Full=Mitochondrial RNA editing factor 10; Flags: Precursor

Protein Classification

pentatricopeptide repeat-containing protein( domain architecture ID 1000585)

pentatricopeptide repeat (PPR)-containing protein may form anti-parallel alpha helices and bind single-stranded RNA in a sequence-specific and modular manner

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03077 super family cl33629
Protein ECB2; Provisional
 21-621 1.30e-156

Protein ECB2; Provisional


The actual alignment was detected with superfamily member PLN03077:

Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 471.64  E-value: 1.30e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981   21 WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTALISMYCK 100
Cdd:PLN03077 155 WNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981  101 CGLVADARKVFEENPQSSQLS----------------------------------------------------------- 121
Cdd:PLN03077 235 CGDVVSARLVFDRMPRRDCISwnamisgyfengecleglelfftmrelsvdpdlmtitsvisacellgderlgremhgyv 314

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981  122 ----------------------------------------VCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLG 161
Cdd:PLN03077 315 vktgfavdvsvcnsliqmylslgswgeaekvfsrmetkdaVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS 394

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981  162 LVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDV 241
Cdd:PLN03077 395 VLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEA 474

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981  242 LELYEQMKSSgVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPvK 321
Cdd:PLN03077 475 LIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHE-K 552

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981  322 SLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLV 401
Cdd:PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV 632

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981  402 DLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWR 481
Cdd:PLN03077 633 DLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVAR 712

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981  482 IRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDELETSVMELAGNM-DCDRGEEVSSTTRE----HS 556
Cdd:PLN03077 713 VRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGsESSSMDEIEVSKDDifcgHS 792

                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 75169981  557 ERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKD 621
Cdd:PLN03077 793 ERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857
 
Name Accession Description Interval E-value
PLN03077 PLN03077
Protein ECB2; Provisional
 21-621 1.30e-156

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 471.64  E-value: 1.30e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981   21 WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTALISMYCK 100
Cdd:PLN03077 155 WNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981  101 CGLVADARKVFEENPQSSQLS----------------------------------------------------------- 121
Cdd:PLN03077 235 CGDVVSARLVFDRMPRRDCISwnamisgyfengecleglelfftmrelsvdpdlmtitsvisacellgderlgremhgyv 314

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981  122 ----------------------------------------VCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLG 161
Cdd:PLN03077 315 vktgfavdvsvcnsliqmylslgswgeaekvfsrmetkdaVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS 394

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981  162 LVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDV 241
Cdd:PLN03077 395 VLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEA 474

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981  242 LELYEQMKSSgVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPvK 321
Cdd:PLN03077 475 LIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHE-K 552

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981  322 SLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLV 401
Cdd:PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV 632

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981  402 DLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWR 481
Cdd:PLN03077 633 DLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVAR 712

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981  482 IRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDELETSVMELAGNM-DCDRGEEVSSTTRE----HS 556
Cdd:PLN03077 713 VRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGsESSSMDEIEVSKDDifcgHS 792

                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 75169981  557 ERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKD 621
Cdd:PLN03077 793 ERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857
DYW_deaminase pfam14432
DYW family of nucleic acid deaminases; This is the DYW domain found in nucleic acid deaminases ...
 554-623 1.23e-32

DYW family of nucleic acid deaminases; This is the DYW domain found in nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members containing this domain are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. This domain contains a characteriztic zinc-binding motif (CXXC, HXE) which has been shown to bind zinc ions. This domain is often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems.


Pssm-ID: 464172 [Multi-domain]  Cd Length: 93  Bit Score: 120.60  E-value: 1.23e-32
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981   554 EHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKDYW 623
Cdd:pfam14432  24 GHSEKLALAYGLLTTPDGATIRITKNLRVCGDCHTAFKYISKIRGREIVVRDASRFHHFKNGLCSCGDFW 93
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 324-357 1.64e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 42.06  E-value: 1.64e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 75169981   324 VSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPD 357
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 372-530 2.54e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.18  E-value: 2.54e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981 372 GLTDKGLELFRAMkreYKLEPG-PEHYSCLVDLLGRAGRLDEAMEFIESM-PVEPDGAVWGALLGACKI-HKNVDMAELA 448
Cdd:COG2956  90 GLLDRAEELLEKL---LELDPDdAEALRLLAEIYEQEGDWEKAIEVLERLlKLGPENAHAYCELAELYLeQGDYDEAIEA 166

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981 449 FAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIwrIRVMmrERAFRKKPGYSyvehkgRVHLFLAgdRSHEQTEEVHRMLDE 528
Cdd:COG2956 167 LEKALKLDPDCARALLLLAELYLEQGDYEEA--IAAL--ERALEQDPDYL------PALPRLA--ELYEKLGDPEEALEL 234


                ..
gi 75169981 529 LE 530
Cdd:COG2956 235 LR 236
 
Name Accession Description Interval E-value
PLN03077 PLN03077
Protein ECB2; Provisional
 21-621 1.30e-156

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 471.64  E-value: 1.30e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981   21 WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTALISMYCK 100
Cdd:PLN03077 155 WNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981  101 CGLVADARKVFEENPQSSQLS----------------------------------------------------------- 121
Cdd:PLN03077 235 CGDVVSARLVFDRMPRRDCISwnamisgyfengecleglelfftmrelsvdpdlmtitsvisacellgderlgremhgyv 314

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981  122 ----------------------------------------VCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLG 161
Cdd:PLN03077 315 vktgfavdvsvcnsliqmylslgswgeaekvfsrmetkdaVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS 394

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981  162 LVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDV 241
Cdd:PLN03077 395 VLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEA 474

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981  242 LELYEQMKSSgVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPvK 321
Cdd:PLN03077 475 LIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHE-K 552

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981  322 SLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLV 401
Cdd:PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV 632

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981  402 DLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWR 481
Cdd:PLN03077 633 DLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVAR 712

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981  482 IRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDELETSVMELAGNM-DCDRGEEVSSTTRE----HS 556
Cdd:PLN03077 713 VRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGsESSSMDEIEVSKDDifcgHS 792

                        650       660       670       680       690       700
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 75169981  557 ERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKD 621
Cdd:PLN03077 793 ERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 25-623 3.17e-144

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 434.68  E-value: 3.17e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981   25 LRELAYQSLFSESISLYRsMLRSGSS--PDAFSFPFILKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTALISMYCKCG 102
Cdd:PLN03081  94 IEKLVACGRHREALELFE-ILEAGCPftLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG 172

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981  103 LVADARKVFEENPQSSQLSvcYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQC 182
Cdd:PLN03081 173 MLIDARRLFDEMPERNLAS--WGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCV 250

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981  183 VKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVS 262
Cdd:PLN03081 251 LKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSI 330

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981  263 VLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIG 342
Cdd:PLN03081 331 MIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKA 410

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981  343 LMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPV 422
Cdd:PLN03081 411 VEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPF 490

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981  423 EPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEH 502
Cdd:PLN03081 491 KPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEV 570

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981  503 KGRVHLFLAGDRSHEQTEEVHRMLDELETSVMELA-----GNM--DCDRGEEVSStTREHSERLAIAFGILNSIPGTEIL 575
Cdd:PLN03081 571 KKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGyvaeeNELlpDVDEDEEKVS-GRYHSEKLAIAFGLINTSEWTPLQ 649

                        570       580       590       600
                 ....*....|....*....|....*....|....*....|....*...
gi 75169981  576 VIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKDYW 623
Cdd:PLN03081 650 ITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697
DYW_deaminase pfam14432
DYW family of nucleic acid deaminases; This is the DYW domain found in nucleic acid deaminases ...
 554-623 1.23e-32

DYW family of nucleic acid deaminases; This is the DYW domain found in nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members containing this domain are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. This domain contains a characteriztic zinc-binding motif (CXXC, HXE) which has been shown to bind zinc ions. This domain is often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems.


Pssm-ID: 464172 [Multi-domain]  Cd Length: 93  Bit Score: 120.60  E-value: 1.23e-32
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981   554 EHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKDYW 623
Cdd:pfam14432  24 GHSEKLALAYGLLTTPDGATIRITKNLRVCGDCHTAFKYISKIRGREIVVRDASRFHHFKNGLCSCGDFW 93
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 186-466 3.04e-14

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 76.45  E-value: 3.04e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981   186 GLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKG----LITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLV 261
Cdd:PLN03218  467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGveanVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFN 546

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981   262 SVLSSCAHLGAKKIGHEV--GKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMP---VK-SLVSWTAMIGCYGM 335
Cdd:PLN03218  547 ALISACGQSGAVDRAFDVlaEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHeynIKgTPEVYTIAVNSCSQ 626

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981   336 HGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREyKLEPGPEHYSCLVDLLGRAGRLDEAME 415
Cdd:PLN03218  627 KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ-GIKLGTVSYSSLMGACSNAKNWKKALE 705

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 75169981   416 F---IESMPVEPDGAVWGALLGACKIHKNVD--MAELAFAKVIEFEPNNIGYYVLM 466
Cdd:PLN03218  706 LyedIKSIKLRPTVSTMNALITALCEGNQLPkaLEVLSEMKRLGLCPNTITYSILL 761
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 196-441 1.37e-13

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 74.14  E-value: 1.37e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981   196 SFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVIS--GYSQN--GlAYDVLELyeqMKSSGVCPDPFTLVSVLSSCAHLG 271
Cdd:PLN03218  411 KFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSvcASSQDidG-ALRVLRL---VQEAGLKADCKLYTTLISTCAKSG 486

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981   272 AKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSL----VSWTAMIGCYGMHGMGEIGLMLFD 347
Cdd:PLN03218  487 KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVkpdrVVFNALISACGQSGAVDRAFDVLA 566

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981   348 DMIKRG--IRPDGAVFVMVLSACSHSGLTDKGLELFRaMKREYKLEPGPEHY---------------------------- 397
Cdd:PLN03218  567 EMKAEThpIDPDHITVGALMKACANAGQVDRAKEVYQ-MIHEYNIKGTPEVYtiavnscsqkgdwdfalsiyddmkkkgv 645

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 75169981   398 -------SCLVDLLGRAGRLDEAMEFIESMPVE--PDGAV-WGALLGACKIHKN 441
Cdd:PLN03218  646 kpdevffSALVDVAGHAGDLDKAFEILQDARKQgiKLGTVsYSSLMGACSNAKN 699
E_motif pfam20431
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ...
 439-501 1.01e-11

E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.


Pssm-ID: 466580 [Multi-domain]  Cd Length: 63  Bit Score: 60.25  E-value: 1.01e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 75169981   439 HKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVE 501
Cdd:pfam20431   1 YSNVELAEKAANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKKRPGCSWIE 63
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 223-269 3.25e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 46.97  E-value: 3.25e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 75169981   223 ITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAH 269
Cdd:pfam13041   4 VTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 321-370 3.48e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 46.97  E-value: 3.48e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 75169981   321 KSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSH 370
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 223-253 1.27e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 42.07  E-value: 1.27e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 75169981   223 ITWNAVISGYSQNGLAYDVLELYEQMKSSGV 253
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 324-357 1.64e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 42.06  E-value: 1.64e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 75169981   324 VSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPD 357
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 121-158 2.51e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 41.97  E-value: 2.51e-05
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 75169981   121 SVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVT 158
Cdd:pfam13041   3 VVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYT 40
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 223-256 3.07e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 41.29  E-value: 3.07e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 75169981   223 ITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPD 256
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 324-354 4.95e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 40.53  E-value: 4.95e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 75169981   324 VSWTAMIGCYGMHGMGEIGLMLFDDMIKRGI 354
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 122-403 5.56e-05

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 46.41  E-value: 5.56e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981   122 VCYNALISGYTANSKVTDAAYMFRRMK--ETGVSVDSVTMLGLVPLCT----VPEYLWLGRSLHGQCVKGGLDSEVAVLN 195
Cdd:PLN03218  543 VVFNALISACGQSGAVDRAFDVLAEMKaeTHPIDPDHITVGALMKACAnagqVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981   196 SfitmYMKCGSVEAGRRLFDEMPVKGL----ITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLG 271
Cdd:PLN03218  623 S----CSQKGDWDFALSIYDDMKKKGVkpdeVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981   272 AKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKAravfdimpvkslvswtamigcygmhgmgeigLMLFDDMIK 351
Cdd:PLN03218  699 NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKA-------------------------------LEVLSEMKR 747

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 75169981   352 RGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREyKLEPGPEHYSCLVDL 403
Cdd:PLN03218  748 LGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGL 798
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 122-156 1.10e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 39.75  E-value: 1.10e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 75169981   122 VCYNALISGYTANSKVTDAAYMFRRMKETGVSVDS 156
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 372-530 2.54e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.18  E-value: 2.54e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981 372 GLTDKGLELFRAMkreYKLEPG-PEHYSCLVDLLGRAGRLDEAMEFIESM-PVEPDGAVWGALLGACKI-HKNVDMAELA 448
Cdd:COG2956  90 GLLDRAEELLEKL---LELDPDdAEALRLLAEIYEQEGDWEKAIEVLERLlKLGPENAHAYCELAELYLeQGDYDEAIEA 166

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981 449 FAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIwrIRVMmrERAFRKKPGYSyvehkgRVHLFLAgdRSHEQTEEVHRMLDE 528
Cdd:COG2956 167 LEKALKLDPDCARALLLLAELYLEQGDYEEA--IAAL--ERALEQDPDYL------PALPRLA--ELYEKLGDPEEALEL 234


                ..
gi 75169981 529 LE 530
Cdd:COG2956 235 LR 236
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 195-232 8.75e-04

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 37.34  E-value: 8.75e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 75169981   195 NSFITMYMKCGSVEAGRRLFDEMPVKGL----ITWNAVISGY 232
Cdd:pfam13041   7 NTLINGYCKKGKVEEAFKLFNEMKKRGVkpnvYTYTILINGL 48
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 394-500 1.69e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 41.52  E-value: 1.69e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981 394 PEHYSCLVDLLGRAGRLDEAME-FIESMPVEPDGAVWGALLG-ACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYS 471
Cdd:COG3914 112 AEALFNLGNLLLALGRLEEALAaLRRALALNPDFAEAYLNLGeALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQ 191

                        90       100       110
                ....*....|....*....|....*....|
gi 75169981 472 DSKN-QEGIWRIRvmmreRAFRKKPGYSYV 500
Cdd:COG3914 192 DLGRlEEAIAAYR-----RALELDPDNADA 216
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 371-497 2.26e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 38.63  E-value: 2.26e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981 371 SGLTDKGLELFRAMkreYKLEPG-PEHYSCLVDLLGRAGRLDEAMEFI-ESMPVEPDGAVWGALLGACKIH-KNVDMAEL 447
Cdd:COG4783  17 AGDYDEAEALLEKA---LELDPDnPEAFALLGEILLQLGDLDEAIVLLhEALELDPDEPEARLNLGLALLKaGDYDEALA 93

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|
gi 75169981 448 AFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIrvmmRERAFRKKPGY 497
Cdd:COG4783  94 LLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAA----LEKALELDPDD 139
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 83-113 3.17e-03

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 35.40  E-value: 3.17e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 75169981    83 GCETEPFVLTALISMYCKCGLVADARKVFEE 113
Cdd:pfam12854   2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDE 32
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 390-420 4.93e-03

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 35.01  E-value: 4.93e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 75169981   390 LEPGPEHYSCLVDLLGRAGRLDEAMEFIESM 420
Cdd:pfam12854   3 LKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 122-152 5.17e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 34.75  E-value: 5.17e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 75169981   122 VCYNALISGYTANSKVTDAAYMFRRMKETGV 152
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 345-405 6.99e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 35.41  E-value: 6.99e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 75169981   345 LFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREyKLEPGPEHYSCLVDLLG 405
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKK-GIKPTLDTYNAILGVIG 61
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 370-459 7.82e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 37.09  E-value: 7.82e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75169981 370 HSGLTDKGLELFRamkREYKLEPG-PEHYSCLVDLLGRAGRLDEAMEFIE-SMPVEPDGAVWGALLGACKIH-KNVDMAE 446
Cdd:COG4783  50 QLGDLDEAIVLLH---EALELDPDePEARLNLGLALLKAGDYDEALALLEkALKLDPEHPEAYLRLARAYRAlGRPDEAI 126

                        90
                ....*....|...
gi 75169981 447 LAFAKVIEFEPNN 459
Cdd:COG4783 127 AALEKALELDPDD 139
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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