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Conserved domains on  [gi|24212261|sp|Q99N90|]
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RecName: Full=Large ribosomal subunit protein bL36m; AltName: Full=39S ribosomal protein L36, mitochondrial; Short=L36mt; Short=MRP-L36; Flags: Precursor

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L36 pfam00444
Ribosomal protein L36;
65-102 4.57e-15

Ribosomal protein L36;


:

Pssm-ID: 459811  Cd Length: 38  Bit Score: 62.91  E-value: 4.57e-15
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 24212261    65 FKTKGVIKKRCKDCYKVKRRGRWFILCKTNPKHKQRQM 102
Cdd:pfam00444   1 MKVRSSLKKRCEDCKVVRRKGRVYVICKKNPRHKQRQG 38
 
Name Accession Description Interval E-value
Ribosomal_L36 pfam00444
Ribosomal protein L36;
65-102 4.57e-15

Ribosomal protein L36;


Pssm-ID: 459811  Cd Length: 38  Bit Score: 62.91  E-value: 4.57e-15
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 24212261    65 FKTKGVIKKRCKDCYKVKRRGRWFILCKTNPKHKQRQM 102
Cdd:pfam00444   1 MKVRSSLKKRCEDCKVVRRKGRVYVICKKNPRHKQRQG 38
RpmJ COG0257
Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 ...
 66-101 6.40e-11

Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440027  Cd Length: 38  Bit Score: 52.43  E-value: 6.40e-11
                        10        20        30
                ....*....|....*....|....*....|....*.
gi 24212261  66 KTKGVIKKRCKDCYKVKRRGRWFILCKTNPKHKQRQ 101
Cdd:COG0257   2 KVRASVKKICRDCKVVRRKGRVYVICKKNPRHKQRQ 37
rpmJ PRK00831
50S ribosomal protein L36; Validated
 71-101 3.88e-07

50S ribosomal protein L36; Validated


Pssm-ID: 179138  Cd Length: 41  Bit Score: 43.06  E-value: 3.88e-07
                         10        20        30
                 ....*....|....*....|....*....|.
gi 24212261   71 IKKRCKDCYKVKRRGRWFILCKTNPKHKQRQ 101
Cdd:PRK00831  10 LKNRHRDCQVVRRKGRVYVINKKNPRFKARQ 40
rpmJ_bact TIGR01022
ribosomal protein L36, bacterial type; Proteins found by this model occur exclusively in ...
 66-101 3.77e-04

ribosomal protein L36, bacterial type; Proteins found by this model occur exclusively in bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130094  Cd Length: 37  Bit Score: 35.15  E-value: 3.77e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 24212261    66 KTKGVIKKRCKDCYKVKRRGRWFILCKtNPKHKQRQ 101
Cdd:TIGR01022   2 KVRASVKKICEKCKIIKRKGVVRVICK-NPKHKQRQ 36
 
Name Accession Description Interval E-value
Ribosomal_L36 pfam00444
Ribosomal protein L36;
65-102 4.57e-15

Ribosomal protein L36;


Pssm-ID: 459811  Cd Length: 38  Bit Score: 62.91  E-value: 4.57e-15
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 24212261    65 FKTKGVIKKRCKDCYKVKRRGRWFILCKTNPKHKQRQM 102
Cdd:pfam00444   1 MKVRSSLKKRCEDCKVVRRKGRVYVICKKNPRHKQRQG 38
RpmJ COG0257
Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 ...
 66-101 6.40e-11

Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440027  Cd Length: 38  Bit Score: 52.43  E-value: 6.40e-11
                        10        20        30
                ....*....|....*....|....*....|....*.
gi 24212261  66 KTKGVIKKRCKDCYKVKRRGRWFILCKTNPKHKQRQ 101
Cdd:COG0257   2 KVRASVKKICRDCKVVRRKGRVYVICKKNPRHKQRQ 37
rpmJ PRK00831
50S ribosomal protein L36; Validated
 71-101 3.88e-07

50S ribosomal protein L36; Validated


Pssm-ID: 179138  Cd Length: 41  Bit Score: 43.06  E-value: 3.88e-07
                         10        20        30
                 ....*....|....*....|....*....|.
gi 24212261   71 IKKRCKDCYKVKRRGRWFILCKTNPKHKQRQ 101
Cdd:PRK00831  10 LKNRHRDCQVVRRKGRVYVINKKNPRFKARQ 40
rpmJ PRK00465
50S ribosomal protein L36; Reviewed
 66-101 9.59e-07

50S ribosomal protein L36; Reviewed


Pssm-ID: 179039  Cd Length: 37  Bit Score: 41.86  E-value: 9.59e-07
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 24212261   66 KTKGVIKKRCKDCYKVKRRGRWFILCkTNPKHKQRQ 101
Cdd:PRK00465   2 KVRASVKKICEKCKVIKRKGVVRVIC-ENPKHKQRQ 36
rpmJ_bact TIGR01022
ribosomal protein L36, bacterial type; Proteins found by this model occur exclusively in ...
 66-101 3.77e-04

ribosomal protein L36, bacterial type; Proteins found by this model occur exclusively in bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130094  Cd Length: 37  Bit Score: 35.15  E-value: 3.77e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 24212261    66 KTKGVIKKRCKDCYKVKRRGRWFILCKtNPKHKQRQ 101
Cdd:TIGR01022   2 KVRASVKKICEKCKIIKRKGVVRVICK-NPKHKQRQ 36
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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