|
Name |
Accession |
Description |
Interval |
E-value |
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
6-500 |
0e+00 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 704.47 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 6 FFSLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDSHRAGIRV 85
Cdd:COG1129 4 LLEMRGISKSFGGVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRFRSPRDAQAAGIAI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 86 IHQEPEIVPNLTVAENIFVGELPRLAGvLLDWRKLEEQTDRVLATFGMqqDMRPRQLCGTLGPAQRQMIEIMRAIRAGGR 165
Cdd:COG1129 84 IHQELNLVPNLSVAENIFLGREPRRGG-LIDWRAMRRRARELLARLGL--DIDPDTPVGDLSVAQQQLVEIARALSRDAR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 166 LIAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSPAAGASEQTIAKLMVGRN 245
Cdd:COG1129 161 VLILDEPTASLTEREVERLFRIIRRLKAQGVAIIYISHRLDEVFEIADRVTVLRDGRLVGTGPVAELTEDELVRLMVGRE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 246 IDDLFTRETWRSGEQLLDVAGLTT-DRVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNS 324
Cdd:COG1129 241 LEDLFPKRAAAPGEVVLEVEGLSVgGVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKPVRIRS 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 325 PHAAIVAGIGFAPEDRKHEALLLFRSILDNAALCVPDKTSSFGFFNRRKAMEIVSPLAAKMSIKAPNLDEQVSKLSGGNQ 404
Cdd:COG1129 321 PRDAIRAGIAYVPEDRKGEGLVLDLSIRENITLASLDRLSRGGLLDRRRERALAEEYIKRLRIKTPSPEQPVGNLSGGNQ 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 405 QKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRITAELARPD 484
Cdd:COG1129 401 QKVVLAKWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAVIVISSELPELLGLSDRILVMREGRIVGELDREE 480
|
490
....*....|....*.
gi 81855249 485 IDEATILKHAMPQSAS 500
Cdd:COG1129 481 ATEEAIMAAATGGAAA 496
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
3-499 |
0e+00 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 524.48 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 3 QSDFFSLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDSHRAG 82
Cdd:PRK11288 1 SSPYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 83 IRVIHQEPEIVPNLTVAENIFVGELPRLAGVLlDWRKLEEQTDRVLATFGMqqDMRPRQLCGTLGPAQRQMIEIMRAIRA 162
Cdd:PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIV-NRRLLNYEAREQLEHLGV--DIDPDTPLKYLSIGQRQMVEIAKALAR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 163 GGRLIAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSPA-AGASEQTIAKLM 241
Cdd:PRK11288 158 NARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDmAQVDRDQLVQAM 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 242 VGRNIDDLFTretWRS---GEQLLDVAGLTTDRV-NDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNG 317
Cdd:PRK11288 238 VGREIGDIYG---YRPrplGEVRLRLDGLKGPGLrEPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDG 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 318 VPVLPNSPHAAIVAGIGFAPEDRKHEALLLFRSILDNAALCVPDKTSSFGFF-NRRKAMEIVSPLAAKMSIKAPNLDEQV 396
Cdd:PRK11288 315 KPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLiNNRWEAENADRFIRSLNIKTPSREQLI 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 397 SKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRI 476
Cdd:PRK11288 395 MNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRI 474
|
490 500
....*....|....*....|...
gi 81855249 477 TAELARPDIDEATILKHAMPQSA 499
Cdd:PRK11288 475 AGELAREQATERQALSLALPRTS 497
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
8-490 |
1.67e-174 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 500.71 E-value: 1.67e-174
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDSHRAGIRVIH 87
Cdd:COG3845 7 ELRGITKRFGGVVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKPVRIRSPRDAIALGIGMVH 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 88 QEPEIVPNLTVAENIFVGeLPRLAGVLLDWRKLEEQTDRVLATFGMQQDmrPRQLCGTLGPAQRQMIEIMRAIRAGGRLI 167
Cdd:COG3845 87 QHFMLVPNLTVAENIVLG-LEPTKGGRLDRKAARARIRELSERYGLDVD--PDAKVEDLSVGEQQRVEILKALYRGARIL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 168 AFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSPAAGASEQTIAKLMVGRNID 247
Cdd:COG3845 164 ILDEPTAVLTPQEADELFEILRRLAAEGKSIIFITHKLREVMAIADRVTVLRRGKVVGTVDTAETSEEELAELMVGREVL 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 248 DLFTRETWRSGEQLLDVAGLT------TDRVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVL 321
Cdd:COG3845 244 LRVEKAPAEPGEVVLEVENLSvrddrgVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDIT 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 322 PNSPHAAIVAGIGFAPEDRKHEALLLFRSILDNAALCVPDKT--SSFGFFNRRKAMEIVSPLAAKMSIKAPNLDEQVSKL 399
Cdd:COG3845 324 GLSPRERRRLGVAYIPEDRLGRGLVPDMSVAENLILGRYRRPpfSRGGFLDRKAIRAFAEELIEEFDVRTPGPDTPARSL 403
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 400 SGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRITAE 479
Cdd:COG3845 404 SGGNQQKVILARELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLELRDAGAAVLLISEDLDEILALSDRIAVMYEGRIVGE 483
|
490
....*....|.
gi 81855249 480 LARPDIDEATI 490
Cdd:COG3845 484 VPAAEATREEI 494
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
8-494 |
3.56e-171 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 492.21 E-value: 3.56e-171
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDSHRAGIRVIH 87
Cdd:PRK10762 6 QLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIH 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 88 QEPEIVPNLTVAENIFVGELPRLAGVLLDWRKLEEQTDRVLATFGMQQdmRPRQLCGTLGPAQRQMIEIMRAIRAGGRLI 167
Cdd:PRK10762 86 QELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRF--SSDKLVGELSIGEQQMVEIAKVLSFESKVI 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 168 AFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSPAAGASEQTIAKLMVGRNID 247
Cdd:PRK10762 164 IMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTEDSLIEMMVGRKLE 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 248 DLFTRETWRSGEQLLDVAGLTTDRVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHA 327
Cdd:PRK10762 244 DQYPRLDKAPGEVRLKVDNLSGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQD 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 328 AIVAGIGFAPEDRKHEALLLFRSILDNAALCVPDKTSSFGFFNRRKA-MEIVSPLAAKMSIKAPNLDEQVSKLSGGNQQK 406
Cdd:PRK10762 324 GLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADeQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQK 403
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 407 VVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRITAELARPDID 486
Cdd:PRK10762 404 VAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQAT 483
|
....*...
gi 81855249 487 EATILKHA 494
Cdd:PRK10762 484 QEKLMAAA 491
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
11-494 |
4.03e-169 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 487.13 E-value: 4.03e-169
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 11 GISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGV--SGPDTGTVRHGSTPIVFGEPRDSHRAGIRVIHQ 88
Cdd:PRK13549 10 NITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVypHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQ 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 89 EPEIVPNLTVAENIFVGELPRLAGVLlDWRKLEEQTDRVLATFGMqqDMRPRQLCGTLGPAQRQMIEIMRAIRAGGRLIA 168
Cdd:PRK13549 90 ELALVKELSVLENIFLGNEITPGGIM-DYDAMYLRAQKLLAQLKL--DINPATPVGNLGLGQQQLVEIAKALNKQARLLI 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 169 FDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSPAAGASEQTIAKLMVGRNIDD 248
Cdd:PRK13549 167 LDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTEDDIITMMVGRELTA 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 249 LFTRETWRSGEQLLDVAGLTT--------DRVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVG-YDRRIAGTIAMNGVP 319
Cdd:PRK13549 247 LYPREPHTIGEVILEVRNLTAwdpvnphiKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGaYPGRWEGEIFIDGKP 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 320 VLPNSPHAAIVAGIGFAPEDRKHEALLLFRSILDNAALCVPDKTSSFGFFNRRKAMEIVSPLAAKMSIKAPNLDEQVSKL 399
Cdd:PRK13549 327 VKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARL 406
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 400 SGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRITAE 479
Cdd:PRK13549 407 SGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGD 486
|
490
....*....|....*
gi 81855249 480 LARPDIDEATILKHA 494
Cdd:PRK13549 487 LINHNLTQEQVMEAA 501
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
11-493 |
1.21e-167 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 483.14 E-value: 1.21e-167
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 11 GISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGpdtgtvrHGS--TPIVF-GEP------RDSHRA 81
Cdd:NF040905 6 GITKTFPGVKALDDVNLSVREGEIHALCGENGAGKSTLMKVLSGVYP-------HGSyeGEILFdGEVcrfkdiRDSEAL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 82 GIRVIHQEPEIVPNLTVAENIFVGELPRLAGVLlDWRKLEEQTDRVLATFGMQQDmrPRQLCGTLGPAQRQMIEIMRAIR 161
Cdd:NF040905 79 GIVIIHQELALIPYLSIAENIFLGNERAKRGVI-DWNETNRRARELLAKVGLDES--PDTLVTDIGVGKQQLVEIAKALS 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 162 AGGRLIAFDEPTSSLTDDEARRLFSVVRRLREKG-TSIIyISHRLNEIIDLADRIVVLRDGRLVD--DSPAAGASEQTIA 238
Cdd:NF040905 156 KDVKLLILDEPTAALNEEDSAALLDLLLELKAQGiTSII-ISHKLNEIRRVADSITVLRDGRTIEtlDCRADEVTEDRII 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 239 KLMVGRNIDDLFTRETWRSGEQLLDVAGLT------TDR--VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVG--YDRR 308
Cdd:NF040905 235 RGMVGRDLEDRYPERTPKIGEVVFEVKNWTvyhplhPERkvVDDVSLNVRRGEIVGIAGLMGAGRTELAMSVFGrsYGRN 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 309 IAGTIAMNGVPVLPNSPHAAIVAGIGFAPEDRKHEALLLFRSILDNAALCVPDKTSSFGFFNRRKAMEIVSPLAAKMSIK 388
Cdd:NF040905 315 ISGTVFKDGKEVDVSTVSDAIDAGLAYVTEDRKGYGLNLIDDIKRNITLANLGKVSRRGVIDENEEIKVAEEYRKKMNIK 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 389 APNLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRV 468
Cdd:NF040905 395 TPSVFQKVGNLSGGNQQKVVLSKWLFTDPDVLILDEPTRGIDVGAKYEIYTIINELAAEGKGVIVISSELPELLGMCDRI 474
|
490 500
....*....|....*....|....*
gi 81855249 469 LVMAGGRITAELARPDIDEATILKH 493
Cdd:NF040905 475 YVMNEGRITGELPREEASQERIMRL 499
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
6-497 |
7.08e-145 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 425.35 E-value: 7.08e-145
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 6 FFSLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDSHRAGIRV 85
Cdd:PRK09700 5 YISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 86 IHQEPEIVPNLTVAENIFVGELP--RLAGV-LLDWRKLEEQTDRVLATFGMQQDmrPRQLCGTLGPAQRQMIEIMRAIRA 162
Cdd:PRK09700 85 IYQELSVIDELTVLENLYIGRHLtkKVCGVnIIDWREMRVRAAMMLLRVGLKVD--LDEKVANLSISHKQMLEIAKTLML 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 163 GGRLIAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSPAAGASEQTIAKLMV 242
Cdd:PRK09700 163 DAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSNDDIVRLMV 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 243 GRNIDDLFT--RETWR--SGEQLLDVAGLTT---DRVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAM 315
Cdd:PRK09700 243 GRELQNRFNamKENVSnlAHETVFEVRNVTSrdrKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRL 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 316 NGVPVLPNSPHAAIVAGIGFAPEDRKHEALLLFRSILDNAALCVPDKTSSF----GFFNRRKAMEIVSPLAAKMSIKAPN 391
Cdd:PRK09700 323 NGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYkgamGLFHEVDEQRTAENQRELLALKCHS 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 392 LDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVM 471
Cdd:PRK09700 403 VNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVF 482
|
490 500
....*....|....*....|....*..
gi 81855249 472 AGGRITAEL-ARPDIDEATILKHAMPQ 497
Cdd:PRK09700 483 CEGRLTQILtNRDDMSEEEIMAWALPQ 509
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
9-495 |
4.96e-136 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 402.67 E-value: 4.96e-136
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 9 LDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGV--SGPDTGTVRHGSTPIVFGEPRDSHRAGIRVI 86
Cdd:TIGR02633 4 MKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVypHGTWDGEIYWSGSPLKASNIRDTERAGIVII 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 87 HQEPEIVPNLTVAENIFVGELPRLAGVLLDWRKLEEQTDRVLATFGMQQDMRPRQLcGTLGPAQRQMIEIMRAIRAGGRL 166
Cdd:TIGR02633 84 HQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV-GDYGGGQQQLVEIAKALNKQARL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 167 IAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSPAAGASEQTIAKLMVGRNI 246
Cdd:TIGR02633 163 LILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSEDDIITMMVGREI 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 247 DDLFTRETWRSGEQLLDVAGLTT--------DRVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVG-YDRRIAGTIAMNG 317
Cdd:TIGR02633 243 TSLYPHEPHEIGDVILEARNLTCwdvinphrKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGaYPGKFEGNVFING 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 318 VPVLPNSPHAAIVAGIGFAPEDRKHEALLLFRSILDNAALCVPDKTSSFGFFNRRKAMEIVSPLAAKMSIKAPNLDEQVS 397
Cdd:TIGR02633 323 KPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIG 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 398 KLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRIT 477
Cdd:TIGR02633 403 RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLK 482
|
490
....*....|....*...
gi 81855249 478 AELARPDIDEATILKHAM 495
Cdd:TIGR02633 483 GDFVNHALTQEQVLAAAL 500
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
11-477 |
1.16e-130 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 388.32 E-value: 1.16e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 11 GISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDSHRAGIRVIHQEP 90
Cdd:PRK10982 3 NISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQEL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 91 EIVPNLTVAENIFVGELPrLAGVLLDWRKLEEQTDRVLATFGMqqDMRPRQLCGTLGPAQRQMIEIMRAIRAGGRLIAFD 170
Cdd:PRK10982 83 NLVLQRSVMDNMWLGRYP-TKGMFVDQDKMYRDTKAIFDELDI--DIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMD 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 171 EPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSPAAGASEQTIAKLMVGRNIDDLF 250
Cdd:PRK10982 160 EPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMDKIIAMMVGRSLTQRF 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 251 TRETWRSGEQLLDVAGLTTDR---VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHA 327
Cdd:PRK10982 240 PDKENKPGEVILEVRNLTSLRqpsIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANE 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 328 AIVAGIGFAPEDRKHEALLLFRSILDNAALCVPDK-TSSFGFFNRRKAMEIVSPLAAKMSIKAPNLDEQVSKLSGGNQQK 406
Cdd:PRK10982 320 AINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNyKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQK 399
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81855249 407 VVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRIT 477
Cdd:PRK10982 400 VIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVA 470
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1-494 |
5.75e-120 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 361.68 E-value: 5.75e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 1 MTQSDFFSLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDSHR 80
Cdd:PRK15439 6 TTAPPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 81 AGIRVIHQEPEIVPNLTVAENIFVGeLPRLAGvllDWRKLEEqtdrVLATFGMQQDmrPRQLCGTLGPAQRQMIEIMRAI 160
Cdd:PRK15439 86 LGIYLVPQEPLLFPNLSVKENILFG-LPKRQA---SMQKMKQ----LLAALGCQLD--LDSSAGSLEVADRQIVEILRGL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 161 RAGGRLIAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSPAAGASEQTIAKL 240
Cdd:PRK15439 156 MRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDDIIQA 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 241 M--VGRNIDDLFTRETW----------RSGEQLLDVAGLTTDRVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRR 308
Cdd:PRK15439 236 ItpAAREKSLSASQKLWlelpgnrrqqAAGAPVLTVEDLTGEGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPA 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 309 IAGTIAMNGVPVLPNSPHAAIVAGIGFAPEDRKHEALLLFRSILDNA-ALCVPDKtssfGFFNRRKA-MEIVSPLAAKMS 386
Cdd:PRK15439 316 RGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVcALTHNRR----GFWIKPAReNAVLERYRRALN 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 387 IKAPNLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLAD 466
Cdd:PRK15439 392 IKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMAD 471
|
490 500
....*....|....*....|....*...
gi 81855249 467 RVLVMAGGRITAELARPDIDEATILKHA 494
Cdd:PRK15439 472 RVLVMHQGEISGALTGAAINVDTIMRLA 499
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
258-476 |
1.32e-82 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 253.89 E-value: 1.32e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 258 GEQLLDVAGLTT-DRVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHAAIVAGIGFA 336
Cdd:cd03215 1 GEPVLEVRGLSVkGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 337 PEDRKHEALLLFRSILDNAALcvpdktssfgffnrrkameivsplaakmsikaPNLdeqvskLSGGNQQKVVLARWLARQ 416
Cdd:cd03215 81 PEDRKREGLVLDLSVAENIAL--------------------------------SSL------LSGGNQQKVVLARWLARD 122
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 417 PMLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRI 476
Cdd:cd03215 123 PRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
7-226 |
6.01e-74 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 230.78 E-value: 6.01e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 7 FSLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDSHRAGIRVI 86
Cdd:cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 87 HQepeivpnltvaenifvgelprlagvlldwrkleeqtdrvlatfgmqqdmrprqlcgtLGPAQRQMIEIMRAIRAGGRL 166
Cdd:cd03216 81 YQ---------------------------------------------------------LSVGERQMVEIARALARNARL 103
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 167 IAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDD 226
Cdd:cd03216 104 LILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVGT 163
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
8-476 |
1.51e-60 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 207.06 E-value: 1.51e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRF--GVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPD---TGTVRHGSTPIVfGEPRDSHRAG 82
Cdd:COG1123 6 EVRDLSVRYpgGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGgriSGEVLLDGRDLL-ELSEALRGRR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 83 IRVIHQEPEIVPN-LTVAENIfvGELPRLAGVllDWRKLEEQTDRVLATFGMQQ--DMRPRQLCGtlGPAQRQMIEImrA 159
Cdd:COG1123 85 IGMVFQDPMTQLNpVTVGDQI--AEALENLGL--SRAEARARVLELLEAVGLERrlDRYPHQLSG--GQRQRVAIAM--A 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 160 IRAGGRLIAFDEPTSSLTDDEARRLFSVVRRL-REKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSPAAGASEQTIA 238
Cdd:COG1123 157 LALDPDLLIADEPTTALDVTTQAEILDLLRELqRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEILAAPQA 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 239 KLMVGR-NIDDLFTRETWRSGEQLLDVAGLTTDR----------VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDR 307
Cdd:COG1123 237 LAAVPRlGAARGRAAPAAAAAEPLLEVRNLSKRYpvrgkggvraVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLR 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 308 RIAGTIAMNGVPVLPNSPHA--AIVAGIGFAPEDRKHeALLLFRSILDNAALCVpdktSSFGFFNRRKAMEIVSPLAAKM 385
Cdd:COG1123 317 PTSGSILFDGKDLTKLSRRSlrELRRRVQMVFQDPYS-SLNPRMTVGDIIAEPL----RLHGLLSRAERRERVAELLERV 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 386 SIKAPNLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAAS-GIGIILISSEMPELIGL 464
Cdd:COG1123 392 GLPPDLADRYPHELSGGQRQRVAIARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRElGLTYLFISHDLAVVRYI 471
|
490
....*....|..
gi 81855249 465 ADRVLVMAGGRI 476
Cdd:COG1123 472 ADRVAVMYDGRI 483
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
8-230 |
2.28e-48 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 166.84 E-value: 2.28e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDSHRAGIRVIH 87
Cdd:cd03219 2 EVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 88 QEPEIVPNLTVAENIFVGELPRLAGVLLDWR------KLEEQTDRVLATFGMQQDMrpRQLCGTLGPAQRQMIEIMRAIR 161
Cdd:cd03219 82 QIPRLFPELTVLENVMVAAQARTGSGLLLARarreerEARERAEELLERVGLADLA--DRPAGELSYGQQRRLEIARALA 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 162 AGGRLIAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGR-LVDDSPAA 230
Cdd:cd03219 160 TDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRvIAEGTPDE 229
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
8-254 |
5.94e-48 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 165.62 E-value: 5.94e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRhgstpiVFGEPRDSHRAGIR--- 84
Cdd:COG1131 2 EVRGLTKRYGDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVR------VLGEDVARDPAEVRrri 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 85 -VIHQEPEIVPNLTVAENI-FVGelpRLAGvlLDWRKLEEQTDRVLATFGMQQdmRPRQLCGTL--GpaQRQMIEIMRAI 160
Cdd:COG1131 76 gYVPQEPALYPDLTVRENLrFFA---RLYG--LPRKEARERIDELLELFGLTD--AADRKVGTLsgG--MKQRLGLALAL 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 161 RAGGRLIAFDEPTSSLtDDEARRLF-SVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLV-DDSPAAgaseqtia 238
Cdd:COG1131 147 LHDPELLILDEPTSGL-DPEARRELwELLRELAAEGKTVLLSTHYLEEAERLCDRVAIIDKGRIVaDGTPDE-------- 217
|
250
....*....|....*.
gi 81855249 239 klMVGRNIDDLFTRET 254
Cdd:COG1131 218 --LKARLLEDVFLELT 231
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
9-250 |
4.49e-45 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 158.48 E-value: 4.49e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 9 LDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRdsHRAGIRVIHQ 88
Cdd:COG4555 4 VENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPRE--ARRQIGVLPD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 89 EPEIVPNLTVAENI-FVGELPRLAGvlldwRKLEEQTDRVLATFGMQQDMrpRQLCGTLGPAQRQMIEIMRAIRAGGRLI 167
Cdd:COG4555 82 ERGLYDRLTVRENIrYFAELYGLFD-----EELKKRIEELIELLGLEEFL--DRRVGELSTGMKKKVALARALVHDPKVL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 168 AFDEPTSSLtDDEARRLF-SVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSPAAGASEQTiaklmVGRNI 246
Cdd:COG4555 155 LLDEPTNGL-DVMARRLLrEILRALKKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELREEI-----GEENL 228
|
....
gi 81855249 247 DDLF 250
Cdd:COG4555 229 EDAF 232
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
8-230 |
1.22e-43 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 154.81 E-value: 1.22e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDSHRAGIRVIH 87
Cdd:COG0411 6 EVRGLTKRFGGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITGLPPHRIARLGIARTF 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 88 QEPEIVPNLTVAENI-----------FVGELPRLAGVLLDWRKLEEQTDRVLATFGMQQdmRPRQLCGTLGPAQRQMIEI 156
Cdd:COG0411 86 QNPRLFPELTVLENVlvaaharlgrgLLAALLRLPRARREEREARERAEELLERVGLAD--RADEPAGNLSYGQQRRLEI 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 81855249 157 MRAIRAGGRLIAFDEPTSSLTDDEARRLFSVVRRLR-EKGTSIIYISHRLNEIIDLADRIVVLRDGR-LVDDSPAA 230
Cdd:COG0411 164 ARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRdERGITILLIEHDMDLVMGLADRIVVLDFGRvIAEGTPAE 239
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
8-228 |
4.46e-40 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 144.42 E-value: 4.46e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFGV----VQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIvfGEPRDSHRAGI 83
Cdd:COG1136 6 ELRNLTKSYGTgegeVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDI--SSLSERELARL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 84 R-----VIHQEPEIVPNLTVAENIfvgELP-RLAGVllDWRKLEEQTDRVLATFGM--QQDMRPRQLCGtlGpaQRQMIE 155
Cdd:COG1136 84 RrrhigFVFQFFNLLPELTALENV---ALPlLLAGV--SRKERRERARELLERVGLgdRLDHRPSQLSG--G--QQQRVA 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 81855249 156 IMRAIRAGGRLIAFDEPTSSLTDDEARRLFSVVRRL-REKGTSIIYISHRLnEIIDLADRIVVLRDGRLVDDSP 228
Cdd:COG1136 155 IARALVNRPKLILADEPTGNLDSKTGEEVLELLRELnRELGTTIVMVTHDP-ELAARADRVIRLRDGRIVSDER 227
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
8-223 |
3.24e-39 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 140.23 E-value: 3.24e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRhgstpiVFGEPRDSHRAGIR--- 84
Cdd:cd03230 2 EVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK------VLGKDIKKEPEEVKrri 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 85 -VIHQEPEIVPNLTVAENIfvgelpRLAGvlldwrkleeqtdrvlatfGMqqdmrprqlcgtlgpaqRQMIEIMRAIRAG 163
Cdd:cd03230 76 gYLPEEPSLYENLTVRENL------KLSG-------------------GM-----------------KQRLALAQALLHD 113
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81855249 164 GRLIAFDEPTSSLtDDEARRLF-SVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRL 223
Cdd:cd03230 114 PELLILDEPTSGL-DPESRREFwELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
9-240 |
6.32e-39 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 141.94 E-value: 6.32e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 9 LDGISKRFG-VVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRD--SHRAGIRV 85
Cdd:cd03256 3 VENLSKTYPnGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKAlrQLRRQIGM 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 86 IHQEPEIVPNLTVAENIFVGELPRLA--GVLLDWRKLEEQTD--RVLATFGMQQDMRPRqlCGTLGPAQRQMIEIMRAIR 161
Cdd:cd03256 83 IFQQFNLIERLSVLENVLSGRLGRRStwRSLFGLFPKEEKQRalAALERVGLLDKAYQR--ADQLSGGQQQRVAIARALM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 162 AGGRLIAFDEPTSSLTDDEARRLFSVVRRL-REKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSPAAGASEQTIAKL 240
Cdd:cd03256 161 QQPKLILADEPVASLDPASSRQVMDLLKRInREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELTDEVLDEI 240
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
8-230 |
2.48e-37 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 136.80 E-value: 2.48e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDSHRAGIRVIH 87
Cdd:cd03224 2 EVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 88 QEPEIVPNLTVAENIfvgelpRLAGVLLDWRKLEEQTDRVLATFGMQQDMRpRQLCGTLGPAQRQMIEIMRAIRAGGRLI 167
Cdd:cd03224 82 EGRRIFPELTVEENL------LLGAYARRRAKRKARLERVYELFPRLKERR-KQLAGTLSGGEQQMLAIARALMSRPKLL 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 81855249 168 AFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSPAA 230
Cdd:cd03224 155 LLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAA 217
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
8-230 |
8.56e-36 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 139.65 E-value: 8.56e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFGV-----VQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPI--VFGEPRDSHR 80
Cdd:COG1123 262 EVRNLSKRYPVrgkggVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLtkLSRRSLRELR 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 81 AGIRVIHQEPE--IVPNLTVAENIfvGELPRLAGVlLDWRKLEEQTDRVLATFGMQQDMR---PRQLCGtlGpaQRQMIE 155
Cdd:COG1123 342 RRVQMVFQDPYssLNPRMTVGDII--AEPLRLHGL-LSRAERRERVAELLERVGLPPDLAdryPHELSG--G--QRQRVA 414
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 81855249 156 IMRAIRAGGRLIAFDEPTSSLtdDE--ARRLFSVVRRLREK-GTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSPAA 230
Cdd:COG1123 415 IARALALEPKLLILDEPTSAL--DVsvQAQILNLLRDLQRElGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPTE 490
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
8-223 |
1.43e-35 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 131.84 E-value: 1.43e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFG----VVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIvfGEPRDSHRAGI 83
Cdd:cd03255 2 ELKNLSKTYGgggeKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDI--SKLSEKELAAF 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 84 R-----VIHQEPEIVPNLTVAENIfvgELP-RLAGVLldWRKLEEQTDRVLATFGMQQDM--RPRQLCGtlgpAQRQMIE 155
Cdd:cd03255 80 RrrhigFVFQSFNLLPDLTALENV---ELPlLLAGVP--KKERRERAEELLERVGLGDRLnhYPSELSG----GQQQRVA 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 81855249 156 IMRAIRAGGRLIAFDEPTSSLTDDEARRLFSVVRRL-REKGTSIIYISHRlNEIIDLADRIVVLRDGRL 223
Cdd:cd03255 151 IARALANDPKIILADEPTGNLDSETGKEVMELLRELnKEAGTTIVVVTHD-PELAEYADRIIELRDGKI 218
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
9-224 |
1.73e-35 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 131.49 E-value: 1.73e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 9 LDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPrdsHRAGIRVIHQ 88
Cdd:cd03259 3 LKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP---ERRNIGMVFQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 89 EPEIVPNLTVAENIFVGelPRLAGVLLDwrKLEEQTDRVLATFGMQQDM--RPRQLCGtlgpAQRQMIEIMRAIRAGGRL 166
Cdd:cd03259 80 DYALFPHLTVAENIAFG--LKLRGVPKA--EIRARVRELLELVGLEGLLnrYPHELSG----GQQQRVALARALAREPSL 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 167 IAFDEPTSSLtDDEAR-RLFSVVRRL-REKGTSIIYISHRLNEIIDLADRIVVLRDGRLV 224
Cdd:cd03259 152 LLLDEPLSAL-DAKLReELREELKELqRELGITTIYVTHDQEEALALADRIAVMNEGRIV 210
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
19-230 |
2.49e-35 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 131.69 E-value: 2.49e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 19 VQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRhgstpiVFGEP-RDSHRAGIR----VIHQEPE-- 91
Cdd:COG1122 14 TPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVL------VDGKDiTKKNLRELRrkvgLVFQNPDdq 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 92 IVpNLTVAENIFVGelPRLAGvlLDWRKLEEQTDRVLATFGMQQ--DMRPRQLCGtlGpaQRQMIEIMRAIRAGGRLIAF 169
Cdd:COG1122 88 LF-APTVEEDVAFG--PENLG--LPREEIRERVEEALELVGLEHlaDRPPHELSG--G--QKQRVAIAGVLAMEPEVLVL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81855249 170 DEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSPAA 230
Cdd:COG1122 159 DEPTAGLDPRGRRELLELLKRLNKEGKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPR 219
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
8-226 |
7.72e-35 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 129.90 E-value: 7.72e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFG----VVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRhgstpiVFGEPRDSHRAGI 83
Cdd:cd03293 2 EVRNVSKTYGggggAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVL------VDGEPVTGPGPDR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 84 RVIHQEPEIVPNLTVAENIFVGelPRLAGVllDWRKLEEQTDRVLATFGMQ--QDMRPRQLCGtlgpAQRQMIEIMRAIR 161
Cdd:cd03293 76 GYVFQQDALLPWLTVLDNVALG--LELQGV--PKAEARERAEELLELVGLSgfENAYPHQLSG----GMRQRVALARALA 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 162 AGGRLIAFDEPTSSL---TDDEARRLfsVVRRLREKGTSIIYISHRLNEIIDLADRIVVL--RDGRLVDD 226
Cdd:cd03293 148 VDPDVLLLDEPFSALdalTREQLQEE--LLDIWRETGKTVLLVTHDIDEAVFLADRVVVLsaRPGRIVAE 215
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
8-222 |
3.84e-33 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 124.89 E-value: 3.84e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRF--GVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDsHRAGIRV 85
Cdd:cd03225 1 ELKNLSFSYpdGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKE-LRRKVGL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 86 IHQEPE--IVpNLTVAENIFVGelPRLAGvlLDWRKLEEQTDRVLATFGMQ--QDMRPRQLCGtlgpAQRQMIEIMRAIR 161
Cdd:cd03225 80 VFQNPDdqFF-GPTVEEEVAFG--LENLG--LPEEEIEERVEEALELVGLEglRDRSPFTLSG----GQKQRVAIAGVLA 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 81855249 162 AGGRLIAFDEPTSSLtDDEARR-LFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGR 222
Cdd:cd03225 151 MDPDILLLDEPTAGL-DPAGRReLLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
8-224 |
5.53e-33 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 127.15 E-value: 5.53e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRhgstpiVFGEPRDshRAGIRVIH 87
Cdd:COG4152 3 ELKGLTKRFGDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVL------WDGEPLD--PEDRRRIG 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 88 QEPE---IVPNLTVAENI-FVGelpRLAGvlLDWRKLEEQTDRVLATFGMQ--QDMRPRQLcgTLGPAQR-QMI------ 154
Cdd:COG4152 75 YLPEergLYPKMKVGEQLvYLA---RLKG--LSKAEAKRRADEWLERLGLGdrANKKVEEL--SKGNQQKvQLIaallhd 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 81855249 155 -EImrairaggrLIaFDEPTSSLtDDEARRLFS-VVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLV 224
Cdd:COG4152 148 pEL---------LI-LDEPFSGL-DPVNVELLKdVIRELAAKGTTVIFSSHQMELVEELCDRIVIINKGRKV 208
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
8-230 |
5.68e-33 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 125.48 E-value: 5.68e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDSHRAGIRVIH 87
Cdd:COG0410 5 EVENLHAGYGGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPPHRIARLGIGYVP 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 88 QEPEIVPNLTVAENIFVGELPRLAGVLLDWRKleeqtDRVLATFGMQQDMRpRQLCGTLGPAQRQMIEIMRAIRAGGRLI 167
Cdd:COG0410 85 EGRRIFPSLTVEENLLLGAYARRDRAEVRADL-----ERVYELFPRLKERR-RQRAGTLSGGEQQMLAIGRALMSRPKLL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 81855249 168 AFDEPTSSLtddeA----RRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSPAA 230
Cdd:COG0410 159 LLDEPSLGL----AplivEEIFEIIRRLNREGVTILLVEQNARFALEIADRAYVLERGRIVLEGTAA 221
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
272-479 |
6.00e-33 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 125.18 E-value: 6.00e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSphAAIVAGIGFAPEDRkheALLLFRSI 351
Cdd:COG1131 16 LDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDP--AEVRRRIGYVPQEP---ALYPDLTV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 352 LDNAALCvpdktSSFGFFNRRKAMEIVSPLAAKMSIkAPNLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDI 431
Cdd:COG1131 91 RENLRFF-----ARLYGLPRKEARERIDELLELFGL-TDAADRKVGTLSGGMKQRLGLALALLHDPELLILDEPTSGLDP 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 81855249 432 GAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRITAE 479
Cdd:COG1131 165 EARRELWELLRELAAEGKTVLLSTHYLEEAERLCDRVAIIDKGRIVAD 212
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
8-226 |
1.37e-32 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 124.16 E-value: 1.37e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRF----GVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPI--VFGEPRDSHRA 81
Cdd:cd03257 3 EVKNLSVSFptggGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLlkLSRRLRKIRRK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 82 GIRVIHQEPEIV--PNLTVAENIfvGELPRLAGVLLDWRKLEEQTDRVLATFGM---QQDMRPRQLCGtlGpaQRQMIEI 156
Cdd:cd03257 83 EIQMVFQDPMSSlnPRMTIGEQI--AEPLRIHGKLSKKEARKEAVLLLLVGVGLpeeVLNRYPHELSG--G--QRQRVAI 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81855249 157 MRAIRAGGRLIAFDEPTSSLTDDEARRLFSVVRRLR-EKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDD 226
Cdd:cd03257 157 ARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQeELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEE 227
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-240 |
3.83e-32 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 123.28 E-value: 3.83e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 1 MTQSDFFSLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRhgstpiVFGEPRDSHR 80
Cdd:COG1121 1 MMMMPAIELENLTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVR------LFGKPPRRAR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 81 AGIRVIHQEPEIVPN--LTVAENIFVGELPRLAGVLLDWRKLEEQTDRVLATFGMqQDMRPRQLcGTL--GpaQRQMIEI 156
Cdd:COG1121 75 RRIGYVPQRAEVDWDfpITVRDVVLMGRYGRRGLFRRPSRADREAVDEALERVGL-EDLADRPI-GELsgG--QQQRVLL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 157 MRAIRAGGRLIAFDEPTSSLtdDEA--RRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSPAAGASE 234
Cdd:COG1121 151 ARALAQDPDLLLLDEPFAGV--DAAteEALYELLRELRREGKTILVVTHDLGAVREYFDRVLLLNRGLVAHGPPEEVLTP 228
|
....*.
gi 81855249 235 QTIAKL 240
Cdd:COG1121 229 ENLSRA 234
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
8-224 |
4.04e-32 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 122.39 E-value: 4.04e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVrhgstpIVFGEPRD-SHRAGIRVI 86
Cdd:cd03269 2 EVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEV------LFDGKPLDiAARNRIGYL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 87 HQEPEIVPNLTVAENIFVgeLPRLAGvlLDWRKLEEQTDRVLATFGM--QQDMRPRQLCGtlgpAQRQMIEIMRAIRAGG 164
Cdd:cd03269 76 PEERGLYPKMKVIDQLVY--LAQLKG--LKKEEARRRIDEWLERLELseYANKRVEELSK----GNQQKVQFIAAVIHDP 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 165 RLIAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLV 224
Cdd:cd03269 148 ELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAV 207
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
11-226 |
6.06e-32 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 121.56 E-value: 6.06e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 11 GISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRhgstpiVFG-EPRDSHRAGIRV--IH 87
Cdd:cd03268 5 DLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT------FDGkSYQKNIEALRRIgaLI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 88 QEPEIVPNLTVAENIfvgelpRLAGVLLDWRKleEQTDRVLATFGMQQdmRPRQLCGTLGPAQRQMIEIMRAIRAGGRLI 167
Cdd:cd03268 79 EAPGFYPNLTARENL------RLLARLLGIRK--KRIDEVLDVVGLKD--SAKKKVKGFSLGMKQRLGIALALLGNPDLL 148
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 81855249 168 AFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDD 226
Cdd:cd03268 149 ILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEE 207
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
272-479 |
6.37e-32 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 122.16 E-value: 6.37e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHAAIVAGIGFAPEDRKheallLFR-- 349
Cdd:cd03224 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRR-----IFPel 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 350 SILDNAALcvpdktssfGFFNRRKAmeivsplAAKMSIKA-----PNLDE----QVSKLSGGNQQKVVLARWLARQPMLL 420
Cdd:cd03224 91 TVEENLLL---------GAYARRRA-------KRKARLERvyelfPRLKErrkqLAGTLSGGEQQMLAIARALMSRPKLL 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 81855249 421 ILDEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRITAE 479
Cdd:cd03224 155 LLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLE 213
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
272-476 |
7.36e-32 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 120.20 E-value: 7.36e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPvlPNSPHAAIVAGIGFAPEDrkhealllfrsi 351
Cdd:cd03230 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKD--IKKEPEEVKRRIGYLPEE------------ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 352 ldnaalcvpdktssFGFFNRRKAMEivsplaakmsikapNLdeqvsKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDI 431
Cdd:cd03230 82 --------------PSLYENLTVRE--------------NL-----KLSGGMKQRLALAQALLHDPELLILDEPTSGLDP 128
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 81855249 432 GAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRI 476
Cdd:cd03230 129 ESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
9-226 |
1.18e-31 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 121.32 E-value: 1.18e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 9 LDGISKRF----GVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVfGEPRDShRAGIR 84
Cdd:cd03266 4 ADALTKRFrdvkKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVV-KEPAEA-RRRLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 85 VIHQEPEIVPNLTVAENI-FVGELPRLAGvlldwRKLEEQTDRVLATFGMQQDMRPRqlCGTLGPAQRQMIEIMRAIRAG 163
Cdd:cd03266 82 FVSDSTGLYDRLTARENLeYFAGLYGLKG-----DELTARLEELADRLGMEELLDRR--VGGFSTGMRQKVAIARALVHD 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 81855249 164 GRLIAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDD 226
Cdd:cd03266 155 PPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYE 217
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
7-237 |
1.70e-31 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 121.69 E-value: 1.70e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 7 FSLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIvfGEPRDSHRAGIR-V 85
Cdd:COG1120 2 LEAENLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDL--ASLSRRELARRIaY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 86 IHQEPEIVPNLTVAENIFVGELPRLAGVLLDWRKLEEQTDRVLATFGMqQDMRPRqLCGTL--GpaQRQMIEIMRAIRAG 163
Cdd:COG1120 80 VPQEPPAPFGLTVRELVALGRYPHLGLFGRPSAEDREAVEEALERTGL-EHLADR-PVDELsgG--ERQRVLIARALAQE 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 81855249 164 GRLIAFDEPTSSLtdDEAR--RLFSVVRRL-REKGTSIIYISHRLNEIIDLADRIVVLRDGRLVddspAAGASEQTI 237
Cdd:COG1120 156 PPLLLLDEPTSHL--DLAHqlEVLELLRRLaRERGRTVVMVLHDLNLAARYADRLVLLKDGRIV----AQGPPEEVL 226
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
272-474 |
3.36e-31 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 119.95 E-value: 3.36e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVlpnsphAAIVAGIGFAPEdrKHEALLLFR-S 350
Cdd:cd03235 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPL------EKERKRIGYVPQ--RRSIDRDFPiS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 351 ILDNAALcVPDKTSSFGFFNRRKAMEIVSPLAAKMSIKApNLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGID 430
Cdd:cd03235 87 VRDVVLM-GLYGHKGLFRRLSKADKAKVDEALERVGLSE-LADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVD 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 81855249 431 IGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGG 474
Cdd:cd03235 165 PKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT 208
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
8-224 |
4.10e-31 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 123.26 E-value: 4.10e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDshRaGIRVIH 87
Cdd:COG3839 5 ELENVSKSYGGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVTDLPPKD--R-NIAMVF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 88 QEPEIVPNLTVAENIfvgELP-RLAGVllDWRKLEEQTDRVLATFGMQQ--DMRPRQLCGtlgpAQRQMIEIMRAIRAGG 164
Cdd:COG3839 82 QSYALYPHMTVYENI---AFPlKLRKV--PKAEIDRRVREAAELLGLEDllDRKPKQLSG----GQRQRVALGRALVREP 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 81855249 165 RLIAFDEPTSSLtD----DEARRLFsvvRRL-REKGTSIIYISHRLNEIIDLADRIVVLRDGRLV 224
Cdd:COG3839 153 KVFLLDEPLSNL-DaklrVEMRAEI---KRLhRRLGTTTIYVTHDQVEAMTLADRIAVMNDGRIQ 213
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
272-479 |
4.68e-31 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 120.23 E-value: 4.68e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHAAIVAGIGfapedRKHEALLLFR-- 349
Cdd:cd03219 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG-----RTFQIPRLFPel 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 350 SILDNAALCVPDKTSSFGFFNRRKAMEIVSPLAAKMSIK----APNLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEP 425
Cdd:cd03219 91 TVLENVMVAAQARTGSGLLLARARREEREARERAEELLErvglADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEP 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 81855249 426 TRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRITAE 479
Cdd:cd03219 171 AAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAE 224
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
273-475 |
5.47e-31 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 119.11 E-value: 5.47e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 273 NDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHAaIVAGIGFA---PEDRkhealLLFR 349
Cdd:cd03225 18 DDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKE-LRRKVGLVfqnPDDQ-----FFGP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 350 SILDNAAlcvpdktssFGFFNR---RKAM-EIVSPLAAKMSIKAPnLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEP 425
Cdd:cd03225 92 TVEEEVA---------FGLENLglpEEEIeERVEEALELVGLEGL-RDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEP 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 81855249 426 TRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGR 475
Cdd:cd03225 162 TAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
9-222 |
7.82e-31 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 117.67 E-value: 7.82e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 9 LDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRD-SHRAGIRVIH 87
Cdd:cd03229 3 LKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELpPLRRRIGMVF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 88 QEPEIVPNLTVAENIfvgelprlagvlldwrkleeqtdrvlaTFGmqqdmrprqlcgtLGPAQRQMIEIMRAIRAGGRLI 167
Cdd:cd03229 83 QDFALFPHLTVLENI---------------------------ALG-------------LSGGQQQRVALARALAMDPDVL 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 81855249 168 AFDEPTSSLtDDEARR-LFSVVRRLREK-GTSIIYISHRLNEIIDLADRIVVLRDGR 222
Cdd:cd03229 123 LLDEPTSAL-DPITRReVRALLKSLQAQlGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
272-489 |
4.11e-30 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 117.88 E-value: 4.11e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHaaivagIGFAPEdrKHEALLLFR-S 350
Cdd:COG1121 22 LEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPRRARRR------IGYVPQ--RAEVDWDFPiT 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 351 ILDNAALCVPDKTSSFGFFNR------RKAMEIV--SPLAakmsikapnlDEQVSKLSGGNQQKVVLARWLARQPMLLIL 422
Cdd:COG1121 94 VRDVVLMGRYGRRGLFRRPSRadreavDEALERVglEDLA----------DRPIGELSGGQQQRVLLARALAQDPDLLLL 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81855249 423 DEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRI----TAELARPDIDEAT 489
Cdd:COG1121 164 DEPFAGVDAATEEALYELLRELRREGKTILVVTHDLGAVREYFDRVLLLNRGLVahgpPEEVLTPENLSRA 234
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
9-477 |
4.54e-30 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 123.25 E-value: 4.54e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 9 LDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVrhgstpivfgeprdSHRAGIRV--I 86
Cdd:COG0488 1 LENLSKSFGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEV--------------SIPKGLRIgyL 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 87 HQEPEIVPNLTVAENIFVGeLPRLAGVLLDWRKLEEQTD-----------------------------RVLATFGMQQDM 137
Cdd:COG0488 67 PQEPPLDDDLTVLDTVLDG-DAELRALEAELEELEAKLAepdedlerlaelqeefealggweaearaeEILSGLGFPEED 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 138 rPRQLCGTLGPAQRQMIEIMRAIRAGGRLIAFDEPTSSLtDDEArrlfsvVRRLRE-----KGTsIIYISH-R--LNEIi 209
Cdd:COG0488 146 -LDRPVSELSGGWRRRVALARALLSEPDLLLLDEPTNHL-DLES------IEWLEEflknyPGT-VLVVSHdRyfLDRV- 215
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 210 dlADRIVVLRDGRLVD-------------------------------------DSPAAGASEQTIAKLMVGR-----NID 247
Cdd:COG0488 216 --ATRILELDRGKLTLypgnysayleqraerleqeaaayakqqkkiakeeefiRRFRAKARKAKQAQSRIKAlekleREE 293
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 248 --------DLFTRETWRSGEQLLDVAGLT---TDRV--NDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIA 314
Cdd:COG0488 294 pprrdktvEIRFPPPERLGKKVLELEGLSksyGDKTllDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVK 373
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 315 MnGVPVLpnsphaaivagIGFAPEDrkHEALLLFRSILDNAALCVPDKTSSFgffnrrkameiVSPLAAKMSIKAPNLDE 394
Cdd:COG0488 374 L-GETVK-----------IGYFDQH--QEELDPDKTVLDELRDGAPGGTEQE-----------VRGYLGRFLFSGDDAFK 428
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 395 QVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAasgiGIILISSEMPELI-GLADRVLVMAG 473
Cdd:COG0488 429 PVGVLSGGEKARLALAKLLLSPPNVLLLDEPTNHLDIETLEALEEALDDFP----GTVLLVSHDRYFLdRVATRILEFED 504
|
....
gi 81855249 474 GRIT 477
Cdd:COG0488 505 GGVR 508
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1-476 |
5.55e-30 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 122.87 E-value: 5.55e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 1 MTQSDFFSLDGISKRFG----VVQALDNVSIAFRPGEVLALVGENGAGKS----TMMRILEGVSGPDTGTVRHGSTPIV- 71
Cdd:COG4172 1 MMSMPLLSVEDLSVAFGqgggTVEAVKGVSFDIAAGETLALVGESGSGKSvtalSILRLLPDPAAHPSGSILFDGQDLLg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 72 FGEPRdshRAGIR-----VIHQEP--EIVPNLTVAENIfvGELPRLAGVLlDWRKLEEQTDRVLATFGMQQDMR-----P 139
Cdd:COG4172 81 LSERE---LRRIRgnriaMIFQEPmtSLNPLHTIGKQI--AEVLRLHRGL-SGAAARARALELLERVGIPDPERrldayP 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 140 RQLCGtlGPAQRQMIEImrAIRAGGR-LIAfDEPTSSLtdD---EARRLfSVVRRL-REKGTSIIYISHRLNEIIDLADR 214
Cdd:COG4172 155 HQLSG--GQRQRVMIAM--ALANEPDlLIA-DEPTTAL--DvtvQAQIL-DLLKDLqRELGMALLLITHDLGVVRRFADR 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 215 IVVLRDGRLVD--------DSPAAGASEQTIAKLMVGRniddlfTRETWRSGEQLLDVAGL-------------TTDR-- 271
Cdd:COG4172 227 VAVMRQGEIVEqgptaelfAAPQHPYTRKLLAAEPRGD------PRPVPPDAPPLLEARDLkvwfpikrglfrrTVGHvk 300
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 -VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRiAGTIAMNGVPVLpnsphaaivagigfapeDRKHEALLLFRS 350
Cdd:COG4172 301 aVDGVSLTLRRGETLGLVGESGSGKSTLGLALLRLIPS-EGEIRFDGQDLD-----------------GLSRRALRPLRR 362
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 351 IL-----DnaalcvPdktssFGFFN-RRKAMEIVS-PLAA-KMSIKAPNLDEQVSKL------------------SGGNQ 404
Cdd:COG4172 363 RMqvvfqD------P-----FGSLSpRMTVGQIIAeGLRVhGPGLSAAERRARVAEAleevgldpaarhryphefSGGQR 431
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 81855249 405 QKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAAS-GIGIILISSEMPELIGLADRVLVMAGGRI 476
Cdd:COG4172 432 QRIAIARALILEPKLLVLDEPTSALDVSVQAQILDLLRDLQREhGLAYLFISHDLAVVRALAHRVMVMKDGKV 504
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-229 |
6.87e-30 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 119.82 E-value: 6.87e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 1 MTQSdFFSLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPrdsHR 80
Cdd:COG3842 1 MAMP-ALELENVSKRYGDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVTGLPP---EK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 81 AGIRVIHQEPEIVPNLTVAENIFVGelPRLAGVllDWRKLEEQTDRVLATFGMQQ--DMRPRQLCGtlGpaQRQMIEIMR 158
Cdd:COG3842 77 RNVGMVFQDYALFPHLTVAENVAFG--LRMRGV--PKAEIRARVAELLELVGLEGlaDRYPHQLSG--G--QQQRVALAR 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 81855249 159 AIRAGGRLIAFDEPTSSLtdDEARRL---FSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLV-DDSPA 229
Cdd:COG3842 149 ALAPEPRVLLLDEPLSAL--DAKLREemrEELRRLQRELGITFIYVTHDQEEALALADRIAVMNDGRIEqVGTPE 221
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
8-224 |
1.77e-29 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 115.29 E-value: 1.77e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFGVVQ--ALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVfgEPRDSHRAGIRV 85
Cdd:cd03263 2 QIRNLTKTYKKGTkpAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIR--TDRKAARQSLGY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 86 IHQEPEIVPNLTVAENI-FVGelpRLAGvlLDWRKLEEQTDRVLATFGMQQDMrpRQLCGTLGPAQRQMIEIMRAIRAGG 164
Cdd:cd03263 80 CPQFDALFDELTVREHLrFYA---RLKG--LPKSEIKEEVELLLRVLGLTDKA--NKRARTLSGGMKRKLSLAIALIGGP 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81855249 165 RLIAFDEPTSSLtDDEARR-LFSVVRRLReKGTSIIYISHRLNEIIDLADRIVVLRDGRLV 224
Cdd:cd03263 153 SVLLLDEPTSGL-DPASRRaIWDLILEVR-KGRSIILTTHSMDEAEALCDRIAIMSDGKLR 211
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
7-222 |
2.59e-29 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 114.50 E-value: 2.59e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 7 FSLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIvfGEPRDSHRAGIRVI 86
Cdd:COG4133 3 LEAENLSCRRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPI--RDAREDYRRRLAYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 87 HQEPEIVPNLTVAENI-FVGelpRLAGVLLDwrklEEQTDRVLATFGMQ--QDMRPRQLcgTLGpaQRQMIEIMRAIRAG 163
Cdd:COG4133 81 GHADGLKPELTVRENLrFWA---ALYGLRAD----REAIDEALEAVGLAglADLPVRQL--SAG--QKRRVALARLLLSP 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 164 GRLIAFDEPTSSLtDDEARRLF-SVVRRLREKGTSIIYISHRLNEIidLADRIVVLRDGR 222
Cdd:COG4133 150 APLWLLDEPFTAL-DAAGVALLaELIAAHLARGGAVLLTTHQPLEL--AAARVLDLGDFK 206
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
261-488 |
3.72e-29 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 114.69 E-value: 3.72e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 261 LLDVAGLTTDR-----VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHAAIVAGIGF 335
Cdd:COG0410 3 MLEVENLHAGYggihvLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPPHRIARLGIGY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 336 APEDRKheallLFR--SILDN---AALCVPDKTSsfgffnRRKAMEIV----SPLAAKMSIKApnldeqvSKLSGGNQQK 406
Cdd:COG0410 83 VPEGRR-----IFPslTVEENlllGAYARRDRAE------VRADLERVyelfPRLKERRRQRA-------GTLSGGEQQM 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 407 VVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRITAE------L 480
Cdd:COG0410 145 LAIGRALMSRPKLLLLDEPSLGLAPLIVEEIFEIIRRLNREGVTILLVEQNARFALEIADRAYVLERGRIVLEgtaaelL 224
|
....*...
gi 81855249 481 ARPDIDEA 488
Cdd:COG0410 225 ADPEVREA 232
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
7-228 |
8.76e-29 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 120.32 E-value: 8.76e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 7 FSLDGISKRFG--VVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIvfGE-PRDSHRAGI 83
Cdd:COG2274 474 IELENVSFRYPgdSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDL--RQiDPASLRRQI 551
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 84 RVIHQEPEIVpNLTVAENIFVGELP----------RLAGVLLDWRKLEEQTDRVLATFGmqqdmrpRQLCGTlgpaQRQM 153
Cdd:COG2274 552 GVVLQDVFLF-SGTIRENITLGDPDatdeeiieaaRLAGLHDFIEALPMGYDTVVGEGG-------SNLSGG----QRQR 619
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 81855249 154 IEIMRAIRAGGRLIAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIyISHRLnEIIDLADRIVVLRDGRLVDDSP 228
Cdd:COG2274 620 LAIARALLRNPRILILDEATSALDAETEAIILENLRRLLKGRTVII-IAHRL-STIRLADRIIVLDKGRIVEDGT 692
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
272-492 |
9.85e-29 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 113.80 E-value: 9.85e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHAaiVAGIGFAPEDRkheALLLFRSI 351
Cdd:COG4555 17 LKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREA--RRQIGVLPDER---GLYDRLTV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 352 LDNAALCVPDKtSSFGFFNRRKAMEIVSplAAKMSikaPNLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDI 431
Cdd:COG4555 92 RENIRYFAELY-GLFDEELKKRIEELIE--LLGLE---EFLDRRVGELSTGMKKKVALARALVHDPKVLLLDEPTNGLDV 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81855249 432 GAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRITAELARPDIDEATILK 492
Cdd:COG4555 166 MARRLLREILRALKKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELREEIGEE 226
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
272-476 |
9.93e-29 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 113.37 E-value: 9.93e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHAAIVAG--IGFAPED---------- 339
Cdd:cd03257 21 LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRkeIQMVFQDpmsslnprmt 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 340 -RKH--EALLLFRSILDNAALcvpdktssfgffNRRKAMEIVS-PLAAKMSIKAPNldeqvsKLSGGNQQKVVLARWLAR 415
Cdd:cd03257 101 iGEQiaEPLRIHGKLSKKEAR------------KEAVLLLLVGvGLPEEVLNRYPH------ELSGGQRQRVAIARALAL 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 81855249 416 QPMLLILDEPTRGIDIGAKAEIYRLIDELAAS-GIGIILISSEMPELIGLADRVLVMAGGRI 476
Cdd:cd03257 163 NPKLLIADEPTSALDVSVQAQILDLLKKLQEElGLTLLFITHDLGVVAKIADRVAVMYAGKI 224
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
10-235 |
1.02e-28 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 113.23 E-value: 1.02e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 10 DGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVrhgstpIVFG-----EPRDShRAGIR 84
Cdd:cd03265 4 ENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRA------TVAGhdvvrEPREV-RRRIG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 85 VIHQEPEIVPNLTVAENIFVgeLPRLAGVllDWRKLEEQTDRVLATFGMqQDMRPRQLCGTLGPAQRQMiEIMRAIRAGG 164
Cdd:cd03265 77 IVFQDLSVDDELTGWENLYI--HARLYGV--PGAERRERIDELLDFVGL-LEAADRLVKTYSGGMRRRL-EIARSLVHRP 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 81855249 165 RLIAFDEPTSSLtDDEARR-LFSVVRRL-REKGTSIIYISHRLNEIIDLADRIVVLRDGRLVddspAAGASEQ 235
Cdd:cd03265 151 EVLFLDEPTIGL-DPQTRAhVWEYIEKLkEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRII----AEGTPEE 218
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
8-222 |
1.08e-28 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 111.18 E-value: 1.08e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDsHRAGIRVIH 87
Cdd:cd00267 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEE-LRRRIGYVP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 88 QepeivpnltvaenifvgelprlagvlldwrkleeqtdrvlatfgmqqdmrprqlcgtLGPAQRQMIEIMRAIRAGGRLI 167
Cdd:cd00267 80 Q---------------------------------------------------------LSGGQRQRVALARALLLNPDLL 102
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 81855249 168 AFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGR 222
Cdd:cd00267 103 LLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
9-476 |
1.72e-28 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 118.37 E-value: 1.72e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 9 LDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSG--PDTGTVRH--------------------- 65
Cdd:TIGR03269 3 VKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQyePTSGRIIYhvalcekcgyverpskvgepc 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 66 ---GST----PIVFGEPRDSHRAGIR-----VIHQEPEIVPNLTVAENIfVGELPRLAgvlldwRKLEEQTDRVLATFGM 133
Cdd:TIGR03269 83 pvcGGTlepeEVDFWNLSDKLRRRIRkriaiMLQRTFALYGDDTVLDNV-LEALEEIG------YEGKEAVGRAVDLIEM 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 134 -QQDMRPRQLCGTLGPAQRQMIEIMRAIRAGGRLIAFDEPTSSLTDDEARRLFSVVRRL-REKGTSIIYISHRLNEIIDL 211
Cdd:TIGR03269 156 vQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAvKASGISMVLTSHWPEVIEDL 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 212 ADRIVVLRDGRLVDDspaaGASEQTIAKLMVGrnIDDLFTRETWRSGEQLLDVAGL-----TTDR-----VNDVSLRVRR 281
Cdd:TIGR03269 236 SDKAIWLENGEIKEE----GTPDEVVAVFMEG--VSEVEKECEVEVGEPIIKVRNVskryiSVDRgvvkaVDNVSLEVKE 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 282 GEVLGIAGLMGAGRSELAKAIVGYDRRIAGT---------IAMNGvPVLPNSPHAAIVAGIGFapedrKHEALLLFRSIL 352
Cdd:TIGR03269 310 GEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEvnvrvgdewVDMTK-PGPDGRGRAKRYIGILH-----QEYDLYPHRTVL 383
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 353 DN----AALCVPDKtssfgfFNRRKAMeIVSPLAAKMSIKAPN-LDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTR 427
Cdd:TIGR03269 384 DNlteaIGLELPDE------LARMKAV-ITLKMVGFDEEKAEEiLDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTG 456
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 81855249 428 GID----IGAKAEIYRLIDELAASgigIILISSEMPELIGLADRVLVMAGGRI 476
Cdd:TIGR03269 457 TMDpitkVDVTHSILKAREEMEQT---FIIVSHDMDFVLDVCDRAALMRDGKI 506
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
8-222 |
1.74e-28 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 110.94 E-value: 1.74e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFG--VVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDSHRAgIRV 85
Cdd:cd03228 2 EFKNVSFSYPgrPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKN-IAY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 86 IHQEPEIVpNLTVAENIFVGelprlaGvlldwrkleeqtdrvlatfgmqqdmrprqlcgtlgpaQRQMIEIMRAIRAGGR 165
Cdd:cd03228 81 VPQDPFLF-SGTIRENILSG------G-------------------------------------QRQRIAIARALLRDPP 116
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 81855249 166 LIAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIyISHRLnEIIDLADRIVVLRDGR 222
Cdd:cd03228 117 ILILDEATSALDPETEALILEALRALAKGKTVIV-IAHRL-STIRDADRIIVLDDGR 171
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
22-174 |
3.22e-28 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 109.66 E-value: 3.22e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 22 LDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEpRDSHRAGIRVIHQEPEIVPNLTVAEN 101
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDE-RKSLRKEIGYVFQDPQLFPRLTVREN 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 81855249 102 IFVGELPRlagvLLDWRKLEEQTDRVLATFGM--QQDMRPRQLCGTLGPAQRQMIEIMRAIRAGGRLIAFDEPTS 174
Cdd:pfam00005 80 LRLGLLLK----GLSKREKDARAEEALEKLGLgdLADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
272-479 |
4.07e-28 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 109.83 E-value: 4.07e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHAAIVAGIGFapedrkhealllfrsi 351
Cdd:cd03216 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAM---------------- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 352 ldnaalcvpdktssfgffnrrkameivsplaakmsikapnldeqVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDI 431
Cdd:cd03216 80 --------------------------------------------VYQLSVGERQMVEIARALARNARLLILDEPTAALTP 115
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 81855249 432 GAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRITAE 479
Cdd:cd03216 116 AEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVGT 163
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
272-479 |
4.16e-28 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 111.66 E-value: 4.16e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPhAAIVAGIGFA---PEDRkhealLLF 348
Cdd:COG1122 17 LDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKNL-RELRRKVGLVfqnPDDQ-----LFA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 349 RSILDNAAlcvpdktssFGFFN----RRKAMEIVSPLAAKMSIKAPnLDEQVSKLSGGNQQKVVLARWLARQPMLLILDE 424
Cdd:COG1122 91 PTVEEDVA---------FGPENlglpREEIRERVEEALELVGLEHL-ADRPPHELSGGQKQRVAIAGVLAMEPEVLVLDE 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 81855249 425 PTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRITAE 479
Cdd:COG1122 161 PTAGLDPRGRRELLELLKRLNKEGKTVIIVTHDLDLVAELADRVIVLDDGRIVAD 215
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
259-504 |
5.07e-28 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 116.93 E-value: 5.07e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 259 EQLLDVAGLT-------TDRVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGY---DRRIAGTIAMNGVPVLPNSPhAA 328
Cdd:COG1123 2 TPLLEVRDLSvrypggdVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLlphGGRISGEVLLDGRDLLELSE-AL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 329 IVAGIGFAPEDrkHEALLLFRSILDNAALCVPDKTSSfgffnRRKAMEIVSPLAAKMSIKAPnLDEQVSKLSGGNQQKVV 408
Cdd:COG1123 81 RGRRIGMVFQD--PMTQLNPVTVGDQIAEALENLGLS-----RAEARARVLELLEAVGLERR-LDRYPHQLSGGQRQRVA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 409 LARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAA-SGIGIILISSEMPELIGLADRVLVMAGGRITAELARPDIDE 487
Cdd:COG1123 153 IAMALALDPDLLIADEPTTALDVTTQAEILDLLRELQReRGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEILA 232
|
250
....*....|....*..
gi 81855249 488 ATILKHAMPQSASSPGD 504
Cdd:COG1123 233 APQALAAVPRLGAARGR 249
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
8-224 |
9.37e-28 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 110.79 E-value: 9.37e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVfgePRDSHRAGIRVIH 87
Cdd:cd03300 2 ELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDIT---NLPPHKRPVNTVF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 88 QEPEIVPNLTVAENIFVGElpRLAGvlLDWRKLEEQTDRVLATFGM--QQDMRPRQLCGtlgpAQRQMIEIMRAIRAGGR 165
Cdd:cd03300 79 QNYALFPHLTVFENIAFGL--RLKK--LPKAEIKERVAEALDLVQLegYANRKPSQLSG----GQQQRVAIARALVNEPK 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81855249 166 LIAFDEPTSSLtDDEARRLFSV-VRRL-REKGTSIIYISHRLNEIIDLADRIVVLRDGRLV 224
Cdd:cd03300 151 VLLLDEPLGAL-DLKLRKDMQLeLKRLqKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQ 210
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
8-224 |
1.10e-27 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 109.93 E-value: 1.10e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRhgstpiVFGEPRDSHRAGIRVIH 87
Cdd:cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIR------VFGKPLEKERKRIGYVP 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 88 QEPEIVPN--LTVAENIFVGELPRLAGVL----LDWRKLEEQTDRVlatfGMqQDMRPRQLcGTLGPAQRQMIEIMRAIR 161
Cdd:cd03235 75 QRRSIDRDfpISVRDVVLMGLYGHKGLFRrlskADKAKVDEALERV----GL-SELADRQI-GELSGGQQQRVLLARALV 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 81855249 162 AGGRLIAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLrDGRLV 224
Cdd:cd03235 149 QDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLL-NRTVV 210
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
9-231 |
2.19e-27 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 109.37 E-value: 2.19e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 9 LDGISKRF-GVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRhgstpiVFGEP----RDSHRAGI 83
Cdd:COG2884 4 FENVSKRYpGGREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVL------VNGQDlsrlKRREIPYL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 84 R----VIHQEPEIVPNLTVAENIfvgELP-RLAGVllDWRKLEEQTDRVLATFGMQQ--DMRPRQLCGtlGPAQRqmIEI 156
Cdd:COG2884 78 RrrigVVFQDFRLLPDRTVYENV---ALPlRVTGK--SRKEIRRRVREVLDLVGLSDkaKALPHELSG--GEQQR--VAI 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 81855249 157 MRAIRAGGRLIAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSPAAG 231
Cdd:COG2884 149 ARALVNRPELLLADEPTGNLDPETSWEIMELLEEINRRGTTVLIATHDLELVDRMPKRVLELEDGRLVRDEARGV 223
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
7-228 |
2.38e-27 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 109.58 E-value: 2.38e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 7 FSLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSG-----PDTGTVR-HGSTPIVFGEPRDSHR 80
Cdd:cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDlipgaPDEGEVLlDGKDIYDLDVDVLELR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 81 AGIRVIHQEPEIVPnLTVAENIFVGelPRLAGVLLDwRKLEEQTDRVLATFGMQQDMRPRQLCGTLGPAQRQMIEIMRAI 160
Cdd:cd03260 81 RRVGMVFQKPNPFP-GSIYDNVAYG--LRLHGIKLK-EELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARAL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 81855249 161 RAGGRLIAFDEPTSSLTDDEARRLFSVVRRLREKgTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSP 228
Cdd:cd03260 157 ANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGP 223
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
8-238 |
7.54e-27 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 108.36 E-value: 7.54e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRhgstpiVFGEPRDS--------H 79
Cdd:cd03261 2 ELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL------IDGEDISGlseaelyrL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 80 RAGIRVIHQEPEIVPNLTVAENIfvgELPrlagvLLDWRKL--EEQTDRVLATFGM-----QQDMRPRQLCGtlGPAQRq 152
Cdd:cd03261 76 RRRMGMLFQSGALFDSLTVFENV---AFP-----LREHTRLseEEIREIVLEKLEAvglrgAEDLYPAELSG--GMKKR- 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 153 mIEIMRAIRAGGRLIAFDEPTSSLTDDEARRLFSVVRRL-REKGTSIIYISHRLNEIIDLADRIVVLRDGRLVddspAAG 231
Cdd:cd03261 145 -VALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLkKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIV----AEG 219
|
....*..
gi 81855249 232 ASEQTIA 238
Cdd:cd03261 220 TPEELRA 226
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
19-243 |
8.52e-27 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 113.20 E-value: 8.52e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 19 VQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDSHRAGIRVIHQEPE---IVPN 95
Cdd:COG3845 271 VPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSPRERRRLGVAYIPEDRLgrgLVPD 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 96 LTVAENIFVGEL---PRLAGVLLDWRKLEEQTDRVLATFgmqqDMR---PRQLCGTL--GPAQRQMI--EIMRAIRAggr 165
Cdd:COG3845 351 MSVAENLILGRYrrpPFSRGGFLDRKAIRAFAEELIEEF----DVRtpgPDTPARSLsgGNQQKVILarELSRDPKL--- 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 166 LIAfDEPTSSLtdDEA------RRLfsvvRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSPAAGASEQTIAK 239
Cdd:COG3845 424 LIA-AQPTRGL--DVGaiefihQRL----LELRDAGAAVLLISEDLDEILALSDRIAVMYEGRIVGEVPAAEATREEIGL 496
|
....
gi 81855249 240 LMVG 243
Cdd:COG3845 497 LMAG 500
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
21-226 |
2.28e-26 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 106.52 E-value: 2.28e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 21 ALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDShRAGIRVIHQEPEIVpNLTVAE 100
Cdd:cd03245 19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADL-RRNIGYVPQDVTLF-YGTLRD 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 101 NIFVGELP----------RLAGVlldwrklEEQTDRVLATFGMQQDMRPRQLCGtlgpAQRQMIEIMRAIRAGGRLIAFD 170
Cdd:cd03245 97 NITLGAPLadderilraaELAGV-------TDFVNKHPNGLDLQIGERGRGLSG----GQRQAVALARALLNDPPILLLD 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 81855249 171 EPTSSLTDDEARRLFSVVRRLREKGTSIIyISHRLNeIIDLADRIVVLRDGRLVDD 226
Cdd:cd03245 166 EPTSAMDMNSEERLKERLRQLLGDKTLII-ITHRPS-LLDLVDRIIVMDSGRIVAD 219
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
7-230 |
3.02e-26 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 106.89 E-value: 3.02e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 7 FSLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILegvsgpdTGTVRHGSTPIVFGEPRDSHRAGIRVI 86
Cdd:PRK11614 6 LSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTL-------CGDPRATSGRIVFDGKDITDWQTAKIM 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 87 HQEPEIVPN-------LTVAENIFVGelprlaGVLLDWRKLEEQTDRVLATFGMQQDMRpRQLCGTLGPAQRQMIEIMRA 159
Cdd:PRK11614 79 REAVAIVPEgrrvfsrMTVEENLAMG------GFFAERDQFQERIKWVYELFPRLHERR-IQRAGTMSGGEQQMLAIGRA 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 81855249 160 IRAGGRLIAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLV-DDSPAA 230
Cdd:PRK11614 152 LMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVlEDTGDA 223
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
269-477 |
3.26e-26 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 105.80 E-value: 3.26e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 269 TDRVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGvpvlPNSPHAAIVAGIGFAPEDRKHEalLLF 348
Cdd:cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG----KPIKAKERRKSIGYVMQDVDYQ--LFT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 349 RSILDNAALCVPDKTssfgffnrrKAMEIVSPLAAKMSIKAPNLDEQVSkLSGGNQQKVVLARWLARQPMLLILDEPTRG 428
Cdd:cd03226 87 DSVREELLLGLKELD---------AGNEQAETVLKDLDLYALKERHPLS-LSGGQKQRLAIAAALLSGKDLLIFDEPTSG 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 81855249 429 IDIGAKAEIYRLIDELAASGIGIILISSEmPELIGL-ADRVLVMAGGRIT 477
Cdd:cd03226 157 LDYKNMERVGELIRELAAQGKAVIVITHD-YEFLAKvCDRVLLLANGAIV 205
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
7-242 |
4.16e-26 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 106.09 E-value: 4.16e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 7 FSLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDSHRAGIRVI 86
Cdd:cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 87 HQEPEIVPNLTVAENIfvgeLPRLAGVLLDWRKLEEQTDRVLATFGMQQdMRpRQLCGTLGPAQRQMIEIMRAIRAGGRL 166
Cdd:cd03218 81 PQEASIFRKLTVEENI----LAVLEIRGLSKKEREEKLEELLEEFHITH-LR-KSKASSLSGGERRRVEIARALATNPKF 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 81855249 167 IAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVddspAAGASEQTIAKLMV 242
Cdd:cd03218 155 LLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVL----AEGTPEEIAANELV 226
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
9-224 |
6.39e-26 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 105.03 E-value: 6.39e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 9 LDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDShraGIRVIHQ 88
Cdd:cd03301 3 LENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDR---DIAMVFQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 89 EPEIVPNLTVAENIFVGelPRLAGVllDWRKLEEQTDRVLATFGMQQ--DMRPRQLCGtlgpAQRQMIEIMRAIRAGGRL 166
Cdd:cd03301 80 NYALYPHMTVYDNIAFG--LKLRKV--PKDEIDERVREVAELLQIEHllDRKPKQLSG----GQRQRVALGRAIVREPKV 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 81855249 167 IAFDEPTSSLTDDEARRLFSVVRRL-REKGTSIIYISHRLNEIIDLADRIVVLRDGRLV 224
Cdd:cd03301 152 FLMDEPLSNLDAKLRVQMRAELKRLqQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
11-223 |
7.48e-26 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 105.88 E-value: 7.48e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 11 GISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTvrhgstpIVFGEPRDSHRA----GIRVI 86
Cdd:cd03296 7 NVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGT-------ILFGGEDATDVPvqerNVGFV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 87 HQEPEIVPNLTVAENIFVGELPRLAGVLLDWRKLEEQTDRVLATFGMQ--QDMRPRQLCGtlgpAQRQMIEIMRAIRAGG 164
Cdd:cd03296 80 FQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDwlADRYPAQLSG----GQRQRVALARALAVEP 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81855249 165 RLIAFDEPTSSLtDDEARR-LFSVVRRLREK-GTSIIYISHRLNEIIDLADRIVVLRDGRL 223
Cdd:cd03296 156 KVLLLDEPFGAL-DAKVRKeLRRWLRRLHDElHVTTVFVTHDQEEALEVADRVVVMNKGRI 215
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
10-237 |
9.28e-26 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 105.97 E-value: 9.28e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 10 DGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRhgstpiVFGEPRDSH----RAGIR- 84
Cdd:COG4559 5 ENLSVRLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVR------LNGRPLAAWspweLARRRa 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 85 VIHQEPEIVPNLTVAEnifVGELPRLAGVLLDwRKLEEQTDRVLATFGMqQDMRPR---QLCGtlGPAQR-Q----MIEI 156
Cdd:COG4559 79 VLPQHSSLAFPFTVEE---VVALGRAPHGSSA-AQDRQIVREALALVGL-AHLAGRsyqTLSG--GEQQRvQlarvLAQL 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 157 MRAIRAGGRLIAFDEPTSSLtdDEA--RRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVddspAAGASE 234
Cdd:COG4559 152 WEPVDGGPRWLFLDEPTSAL--DLAhqHAVLRLARQLARRGGGVVAVLHDLNLAAQYADRILLLHQGRLV----AQGTPE 225
|
...
gi 81855249 235 QTI 237
Cdd:COG4559 226 EVL 228
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
8-224 |
1.05e-25 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 104.97 E-value: 1.05e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFG----VVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRD--SHRA 81
Cdd:cd03258 3 ELKNVSKVFGdtggKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKElrKARR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 82 GIRVIHQEPEIVPNLTVAENIfvgELP-RLAGVllDWRKLEEQTDRVLATFGMQQ--DMRPRQLCGtlgpAQRQMIEIMR 158
Cdd:cd03258 83 RIGMIFQHFNLLSSRTVFENV---ALPlEIAGV--PKAEIEERVLELLELVGLEDkaDAYPAQLSG----GQKQRVGIAR 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 159 AIRAGGRLIAFDEPTSSLtDDEARRlfSVVRRL----REKGTSIIYISHRLNEIIDLADRIVVLRDGRLV 224
Cdd:cd03258 154 ALANNPKVLLCDEATSAL-DPETTQ--SILALLrdinRELGLTIVLITHEMEVVKRICDRVAVMEKGEVV 220
|
|
| COG4674 |
COG4674 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
8-223 |
1.85e-25 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 104.81 E-value: 1.85e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVfgePRDSH---RAGIR 84
Cdd:COG4674 12 YVEDLTVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTLMDVITGKTRPDSGSVLFGGTDLT---GLDEHeiaRLGIG 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 85 VIHQEPEIVPNLTVAENIFVGeLPRLAGVL--LDWRKLEEQTDR---VLATFGMQQDMrpRQLCGTLGPAQRQMIEImra 159
Cdd:COG4674 89 RKFQKPTVFEELTVFENLELA-LKGDRGVFasLFARLTAEERDRieeVLETIGLTDKA--DRLAGLLSHGQKQWLEI--- 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81855249 160 iragGRLIA-------FDEPTSSLTDDEARRLFSVVRRLREKgTSIIYISHRLNEIIDLADRIVVLRDGRL 223
Cdd:COG4674 163 ----GMLLAqdpklllLDEPVAGMTDAETERTAELLKSLAGK-HSVVVVEHDMEFVRQIARKVTVLHQGSV 228
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
20-225 |
2.11e-25 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 109.46 E-value: 2.11e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 20 QALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVfGEPRDSHRAGIRVIHQEPEIvPNLTVA 99
Cdd:COG4988 351 PALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLS-DLDPASWRRQIAWVPQNPYL-FAGTIR 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 100 ENIfvgelpRLAGVLLDWRKLEEQTDRV-LATFGMQQdmrPRQLCGTLGPA-------QRQMIEIMRAIRAGGRLIAFDE 171
Cdd:COG4988 429 ENL------RLGRPDASDEELEAALEAAgLDEFVAAL---PDGLDTPLGEGgrglsggQAQRLALARALLRDAPLLLLDE 499
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 81855249 172 PTSSLTDDEARRLFSVVRRLReKGTSIIYISHRLnEIIDLADRIVVLRDGRLVD 225
Cdd:COG4988 500 PTAHLDAETEAEILQALRRLA-KGRTVILITHRL-ALLAQADRILVLDDGRIVE 551
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
7-223 |
2.28e-25 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 103.76 E-value: 2.28e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 7 FSLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVrhgstpIVFGEPRDSHRAGIRVI 86
Cdd:cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI------IIDGLKLTDDKKNINEL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 87 HQEPEIV-------PNLTVAENIFVGelPRLagVL-LDWRKLEEQTDRVLATFGM--QQDMRPRQLCGtlgpAQRQMIEI 156
Cdd:cd03262 75 RQKVGMVfqqfnlfPHLTVLENITLA--PIK--VKgMSKAEAEERALELLEKVGLadKADAYPAQLSG----GQQQRVAI 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 81855249 157 MRAIRAGGRLIAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRL 223
Cdd:cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
269-479 |
3.12e-25 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 102.13 E-value: 3.12e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 269 TDRVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHaaivagigfapEDRKHEALLLf 348
Cdd:cd03214 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPK-----------ELARKIAYVP- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 349 rsildnaalcvpdktssfgffnrrKAMEIV--SPLAakmsikapnlDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPT 426
Cdd:cd03214 80 ------------------------QALELLglAHLA----------DRPFNELSGGERQRVLLARALAQEPPILLLDEPT 125
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 81855249 427 RGIDIGAKAEIYRLIDELAAS-GIGIILISSEmpelIGLA----DRVLVMAGGRITAE 479
Cdd:cd03214 126 SHLDIAHQIELLELLRRLARErGKTVVMVLHD----LNLAaryaDRVILLKDGRIVAQ 179
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
272-476 |
4.14e-25 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 102.98 E-value: 4.14e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHAAivaGIGFAPEDRkheALLLFRSI 351
Cdd:cd03259 16 LDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERR---NIGMVFQDY---ALFPHLTV 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 352 LDNAAlcvpdktssFGFFNR---RKAMEIVSPLAAKMSIKAPNLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRG 428
Cdd:cd03259 90 AENIA---------FGLKLRgvpKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSA 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 81855249 429 IDIGAKAEIYRLIDEL-AASGIGIILISSEMPELIGLADRVLVMAGGRI 476
Cdd:cd03259 161 LDAKLREELREELKELqRELGITTIYVTHDQEEALALADRIAVMNEGRI 209
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
273-476 |
4.35e-25 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 102.59 E-value: 4.35e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 273 NDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPhaaivagigfaPEDRKH------EALL 346
Cdd:COG4619 17 SPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAMPP-----------PEWRRQvayvpqEPAL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 347 LFRSILDNAALcvpdktsSFGFFNRRKAMEIVSPLAAKMSIKAPNLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPT 426
Cdd:COG4619 86 WGGTVRDNLPF-------PFQLRERKFDRERALELLERLGLPPDILDKPVERLSGGERQRLALIRALLLQPDVLLLDEPT 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 81855249 427 RGIDIGAKAEIYRLIDELAAS-GIGIILISSEmPELIG-LADRVLVMAGGRI 476
Cdd:COG4619 159 SALDPENTRRVEELLREYLAEeGRAVLWVSHD-PEQIErVADRVLTLEAGRL 209
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
8-224 |
4.45e-25 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 103.53 E-value: 4.45e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFGVVQ-ALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDSHRAGIRVI 86
Cdd:cd03295 2 EFENVTKRYGGGKkAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 87 hQEPEIVPNLTVAENIfvGELPRLAGvlldW--RKLEEQTDRVLATFGMQ----QDMRPRQLCGtlgpAQRQMIEIMRAI 160
Cdd:cd03295 82 -QQIGLFPHMTVEENI--ALVPKLLK----WpkEKIRERADELLALVGLDpaefADRYPHELSG----GQQQRVGVARAL 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 81855249 161 RAGGRLIAFDEPTSSLTDDEARRLFSVVRRL-REKGTSIIYISHRLNEIIDLADRIVVLRDGRLV 224
Cdd:cd03295 151 AADPPLLLMDEPFGALDPITRDQLQEEFKRLqQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIV 215
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
31-224 |
6.58e-25 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 102.37 E-value: 6.58e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 31 PGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPR---DSHRAGIRVIHQEPEIVPNLTVAENIFVGeL 107
Cdd:cd03297 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKinlPPQQRKIGLVFQQYALFPHLNVRENLAFG-L 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 108 PRLAGvlldwRKLEEQTDRVLATFGMQQ--DMRPRQLCGtlgpAQRQMIEIMRAIRAGGRLIAFDEPTSSLTDDEARRLF 185
Cdd:cd03297 101 KRKRN-----REDRISVDELLDLLGLDHllNRYPAQLSG----GEKQRVALARALAAQPELLLLDEPFSALDRALRLQLL 171
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 81855249 186 SVVRRLREK-GTSIIYISHRLNEIIDLADRIVVLRDGRLV 224
Cdd:cd03297 172 PELKQIKKNlNIPVIFVTHDLSEAEYLADRIVVMEDGRLQ 211
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
1-224 |
9.64e-25 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 103.08 E-value: 9.64e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 1 MTQSDFFSLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTV----RHGSTPIVFGEPR 76
Cdd:PRK11701 1 MMDQPLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVhyrmRDGQLRDLYALSE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 77 DSHRAGIR----VIHQEPEIVPNLTVAENIFVGElpRLAGV-----------LLDW-RKLEEQTDRVlatfgmqqDMRPR 140
Cdd:PRK11701 81 AERRRLLRtewgFVHQHPRDGLRMQVSAGGNIGE--RLMAVgarhygdiratAGDWlERVEIDAARI--------DDLPT 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 141 QLCGTLgpaqRQMIEIMRAIRAGGRLIAFDEPTSSLTDDEARRLFSVVRRL-REKGTSIIYISHRLNEIIDLADRIVVLR 219
Cdd:PRK11701 151 TFSGGM----QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLvRELGLAVVIVTHDLAVARLLAHRLLVMK 226
|
....*
gi 81855249 220 DGRLV 224
Cdd:PRK11701 227 QGRVV 231
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
20-224 |
1.70e-24 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 101.53 E-value: 1.70e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 20 QALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVfGEPRDSHRAGIRVIHQEPEIVPNlTVA 99
Cdd:cd03254 17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIR-DISRKSLRSMIGVVLQDTFLFSG-TIM 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 100 ENIFVG----------ELPRLAGVLLDWRKLEEQTDRVLATFGmqqdmrprqlcGTLGPAQRQMIEIMRAIRAGGRLIAF 169
Cdd:cd03254 95 ENIRLGrpnatdeeviEAAKEAGAHDFIMKLPNGYDTVLGENG-----------GNLSQGERQLLAIARAMLRDPKILIL 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 81855249 170 DEPTSSLTDDEARRLFSVVRRLREKGTSIIyISHRLNEIIDlADRIVVLRDGRLV 224
Cdd:cd03254 164 DEATSNIDTETEKLIQEALEKLMKGRTSII-IAHRLSTIKN-ADKILVLDDGKII 216
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
7-223 |
1.70e-24 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 99.98 E-value: 1.70e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 7 FSLDGISKRFGVVQA--LDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIvFGEPRDSHRAGIR 84
Cdd:cd03246 1 LEVENVSFRYPGAEPpvLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADI-SQWDPNELGDHVG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 85 VIHQEPEIVPNlTVAENIFVGelprlagvlldwrkleeqtdrvlatfgmqqdmrprqlcgtlgpAQRQMIEIMRAIRAGG 164
Cdd:cd03246 80 YLPQDDELFSG-SIAENILSG-------------------------------------------GQRQRLGLARALYGNP 115
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 81855249 165 RLIAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLnEIIDLADRIVVLRDGRL 223
Cdd:cd03246 116 RILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP-ETLASADRILVLEDGRV 173
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
273-479 |
2.55e-24 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 101.42 E-value: 2.55e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 273 NDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHAAIvagigfapEDRKHEALL-----L 347
Cdd:cd03261 17 KGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELY--------RLRRRMGMLfqsgaL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 348 FRS--ILDNAALCVPDKTSsfgfFNRRKAMEIVsplaaKMSIKAPNLDEQVSK----LSGGNQQKVVLARWLARQPMLLI 421
Cdd:cd03261 89 FDSltVFENVAFPLREHTR----LSEEEIREIV-----LEKLEAVGLRGAEDLypaeLSGGMKKRVALARALALDPELLL 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 81855249 422 LDEPTRGIDIGAKAEIYRLIDELAAS-GIGIILISSEMPELIGLADRVLVMAGGRITAE 479
Cdd:cd03261 160 YDEPTAGLDPIASGVIDDLIRSLKKElGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAE 218
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
272-487 |
3.04e-24 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 103.37 E-value: 3.04e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVlPNSPHAAiVAGIGFAPEdrkhealllfrsi 351
Cdd:PRK13536 57 VNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPV-PARARLA-RARIGVVPQ------------- 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 352 LDNAAL--CVPDKTSSFGFFNRRKAMEI---VSPLA--AKMSIKApnlDEQVSKLSGGNQQKVVLARWLARQPMLLILDE 424
Cdd:PRK13536 122 FDNLDLefTVRENLLVFGRYFGMSTREIeavIPSLLefARLESKA---DARVSDLSGGMKRRLTLARALINDPQLLILDE 198
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 81855249 425 PTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRITAElARPD--IDE 487
Cdd:PRK13536 199 PTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAE-GRPHalIDE 262
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
8-230 |
3.49e-24 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 100.84 E-value: 3.49e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRhgstpiVFGEPRDSHRAGIRVIH 87
Cdd:COG1126 3 EIENLHKSFGDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIT------VDGEDLTDSKKDINKLR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 88 QEPEIV-------PNLTVAENIFVGelPRLagVL-LDWRKLEEQTDRVLATFGM--QQDMRPRQLCGtlGPAQRqmIEIM 157
Cdd:COG1126 77 RKVGMVfqqfnlfPHLTVLENVTLA--PIK--VKkMSKAEAEERAMELLERVGLadKADAYPAQLSG--GQQQR--VAIA 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 81855249 158 RAIRAGGRLIAFDEPTSSLtDDE-ARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSPAA 230
Cdd:COG1126 149 RALAMEPKVMLFDEPTSAL-DPElVGEVLDVMRDLAKEGMTMVVVTHEMGFAREVADRVVFMDGGRIVEEGPPE 221
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
12-228 |
3.88e-24 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 100.94 E-value: 3.88e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 12 ISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMR---ILEGVSGPDTgtvrhgstpIVFGEPRDSHRAGIRVIHQ 88
Cdd:PRK09493 7 VSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRcinKLEEITSGDL---------IVDGLKVNDPKVDERLIRQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 89 EPEIV-------PNLTVAENIFVGELpRLAGvlLDWRKLEEQTDRVLATFGMQQDMR--PRQLCGtlgpAQRQMIEIMRA 159
Cdd:PRK09493 78 EAGMVfqqfylfPHLTALENVMFGPL-RVRG--ASKEEAEKQARELLAKVGLAERAHhyPSELSG----GQQQRVAIARA 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 160 IRAGGRLIAFDEPTSSLtDDEARR-LFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSP 228
Cdd:PRK09493 151 LAVKPKLMLFDEPTSAL-DPELRHeVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGD 219
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
8-224 |
4.29e-24 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 99.96 E-value: 4.29e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFGVVQALDNVSIAFRPGeVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVfgEPRDSHRAGIRVIH 87
Cdd:cd03264 2 QLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVL--KQPQKLRRRIGYLP 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 88 QEPEIVPNLTVAEniFVGELPRLAGVllDWRKLEEQTDRVLATFGMQQdmRPRQLCGTLGPAQRQMIEIMRAIRAGGRLI 167
Cdd:cd03264 79 QEFGVYPNFTVRE--FLDYIAWLKGI--PSKEVKARVDEVLELVNLGD--RAKKKIGSLSGGMRRRVGIAQALVGDPSIL 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 81855249 168 AFDEPTSSLTDDEARRLFSVVRRLREkGTSIIYISHRLNEIIDLADRIVVLRDGRLV 224
Cdd:cd03264 153 IVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVEDVESLCNQVAVLNKGKLV 208
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
272-485 |
4.34e-24 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 101.03 E-value: 4.34e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVlPNSPHAAIVAGIGFAPED-------RK--- 341
Cdd:COG1124 21 LKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPV-TRRRRKAFRRRVQMVFQDpyaslhpRHtvd 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 342 ---HEALLLFRsildnaalcvpdktssfgffnRRKAMEIVSPLAAKMSIKAPNLDEQVSKLSGGNQQKVVLARWLARQPM 418
Cdd:COG1124 100 rilAEPLRIHG---------------------LPDREERIAELLEQVGLPPSFLDRYPHQLSGGQRQRVAIARALILEPE 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 81855249 419 LLILDEPTRGIDIGAKAEIYRLIDEL-AASGIGIILISSEMPELIGLADRVLVMAGGRITAELARPDI 485
Cdd:COG1124 159 LLLLDEPTSALDVSVQAEILNLLKDLrEERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADL 226
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
8-224 |
5.72e-24 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 100.44 E-value: 5.72e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRhgstpiVFGEP--------RDSH 79
Cdd:COG1127 7 EVRNLTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEIL------VDGQDitglsekeLYEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 80 RAGIRVIHQEPEIVPNLTVAENIfvgELPRLAGVLLDWRKLEEQTDRVLATFGMQQ--DMRPRQLCGtlGPAQRqmIEIM 157
Cdd:COG1127 81 RRRIGMLFQGGALFDSLTVFENV---AFPLREHTDLSEAEIRELVLEKLELVGLPGaaDKMPSELSG--GMRKR--VALA 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 81855249 158 RAIRAGGRLIAFDEPTSSLTDDEARRLFSVVRRLREK-GTSIIYISHRLNEIIDLADRIVVLRDGRLV 224
Cdd:COG1127 154 RALALDPEILLYDEPTAGLDPITSAVIDELIRELRDElGLTSVVVTHDLDSAFAIADRVAVLADGKII 221
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
269-478 |
6.09e-24 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 99.97 E-value: 6.09e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 269 TDRVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPhAAIVAGIGFAPEDrkheALLLF 348
Cdd:cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDP-ADLRRNIGYVPQD----VTLFY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 349 RSILDNAALCVPDKTSsfgffnRR--KAMEI--VSPLAAKMsikaPN-LDEQVSK----LSGGNQQKVVLARWLARQPML 419
Cdd:cd03245 92 GTLRDNITLGAPLADD------ERilRAAELagVTDFVNKH----PNgLDLQIGErgrgLSGGQRQAVALARALLNDPPI 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 420 LILDEPTRGIDIGAKAeiyRLIDELAASGIG-IILISSEMPELIGLADRVLVMAGGRITA 478
Cdd:cd03245 162 LLLDEPTSAMDMNSEE---RLKERLRQLLGDkTLIIITHRPSLLDLVDRIIVMDSGRIVA 218
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
20-224 |
6.32e-24 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 105.25 E-value: 6.32e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 20 QALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPI--VfgePRDSHRAGIRVIHQEPEIVpNLT 97
Cdd:COG1132 354 PVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIrdL---TLESLRRQIGVVPQDTFLF-SGT 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 98 VAENIFVGELP----------RLAGvLLDW-RKLEEQTDRVLATFGMqqdmrprqlcgTLGPAQRQMIEIMRAIRAGGRL 166
Cdd:COG1132 430 IRENIRYGRPDatdeeveeaaKAAQ-AHEFiEALPDGYDTVVGERGV-----------NLSGGQRQRIAIARALLKDPPI 497
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 81855249 167 IAFDEPTSSLtDDEA-RRLFSVVRRLREKGTSIIyISHRLNEIIDlADRIVVLRDGRLV 224
Cdd:COG1132 498 LILDEATSAL-DTETeALIQEALERLMKGRTTIV-IAHRLSTIRN-ADRILVLDDGRIV 553
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
272-478 |
1.04e-23 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 98.89 E-value: 1.04e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHAaivagIGFAPEDRkheALLLFRSI 351
Cdd:cd03269 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNR-----IGYLPEER---GLYPKMKV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 352 LDNAAlcvpdktssfgFFNRRKAMeivSPLAAKMSIK--------APNLDEQVSKLSGGNQQKVVLARWLARQPMLLILD 423
Cdd:cd03269 88 IDQLV-----------YLAQLKGL---KKEEARRRIDewlerlelSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILD 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 81855249 424 EPTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRITA 478
Cdd:cd03269 154 EPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVL 208
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
272-475 |
1.09e-23 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 97.64 E-value: 1.09e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPvlpnsphaaIVAGIGFAPEDRKHEALLLfrsi 351
Cdd:cd03229 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGED---------LTDLEDELPPLRRRIGMVF---- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 352 ldnaalcvpdktSSFGFFNRRKAMEIVSPLaakmsikapnldeqvskLSGGNQQKVVLARWLARQPMLLILDEPTRGIDI 431
Cdd:cd03229 83 ------------QDFALFPHLTVLENIALG-----------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDP 133
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 81855249 432 GAKAEIYRLIDELAA-SGIGIILISSEMPELIGLADRVLVMAGGR 475
Cdd:cd03229 134 ITRREVRALLKSLQAqLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
21-223 |
1.13e-23 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 97.89 E-value: 1.13e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 21 ALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDSHRAGIRVIhqePE------IVP 94
Cdd:cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYV---PEdrkregLVL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 95 NLTVAENIFVGELprLAGvlldwrkleeqtdrvlatfGMQQDmrprqlcgtlgpaqrqmIEIMRAIRAGGRLIAFDEPTS 174
Cdd:cd03215 92 DLSVAENIALSSL--LSG-------------------GNQQK-----------------VVLARWLARDPRVLILDEPTR 133
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 81855249 175 SLtDDEARR-LFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRL 223
Cdd:cd03215 134 GV-DVGAKAeIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
272-475 |
2.67e-23 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 96.16 E-value: 2.67e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHAaIVAGIGFAPEdrkhealllfrsi 351
Cdd:cd00267 15 LDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEE-LRRRIGYVPQ------------- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 352 ldnaalcvpdktssfgffnrrkameivsplaakmsikapnldeqvskLSGGNQQKVVLARWLARQPMLLILDEPTRGIDI 431
Cdd:cd00267 81 -----------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDP 113
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 81855249 432 GAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGR 475
Cdd:cd00267 114 ASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
4-237 |
2.83e-23 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 98.62 E-value: 2.83e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 4 SDFFSLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTG-TVRhgstpiVFGEPRDSH--- 79
Cdd:COG1119 1 DPLLELRNVTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGnDVR------LFGERRGGEdvw 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 80 --RAGIRVIHQE--PEIVPNLTVAENIFVGelprLAGVLLDWRKL----EEQTDRVLATFGMQqDMRPRQLcGTLGPAQR 151
Cdd:COG1119 75 elRKRIGLVSPAlqLRFPRDETVLDVVLSG----FFDSIGLYREPtdeqRERARELLELLGLA-HLADRPF-GTLSQGEQ 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 152 QMIEIMRAIRAGGRLIAFDEPTSSLtDDEARRLF-SVVRRLREKG-TSIIYISHRLNEIIDLADRIVVLRDGRLVddspA 229
Cdd:COG1119 149 RRVLIARALVKDPELLILDEPTAGL-DLGARELLlALLDKLAAEGaPTLVLVTHHVEEIPPGITHVLLLKDGRVV----A 223
|
....*...
gi 81855249 230 AGASEQTI 237
Cdd:COG1119 224 AGPKEEVL 231
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
20-476 |
3.74e-23 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 102.48 E-value: 3.74e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 20 QALDNVSIAFRPGEVLALVGENGAGKS----TMMRILEG--VSGPDTGTVRHGSTPIVFGEPRDSHRAG--IRVIHQEPE 91
Cdd:PRK15134 23 TVVNDVSLQIEAGETLALVGESGSGKSvtalSILRLLPSppVVYPSGDIRFHGESLLHASEQTLRGVRGnkIAMIFQEPM 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 92 IVPN-LTVAENifvgelpRLAGVLLDWRKLEEQTDRV-----LATFGMQQDMR-----PRQLCGtlGPAQRQMIEImrAI 160
Cdd:PRK15134 103 VSLNpLHTLEK-------QLYEVLSLHRGMRREAARGeilncLDRVGIRQAAKrltdyPHQLSG--GERQRVMIAM--AL 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 161 RAGGRLIAFDEPTSSLTDDEARRLFSVVRRL-REKGTSIIYISHRLNEIIDLADRIVVLRDGRLVD--------DSPAAG 231
Cdd:PRK15134 172 LTRPELLIADEPTTALDVSVQAQILQLLRELqQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEqnraatlfSAPTHP 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 232 ASEQTIAKLMVGRNIddlftrETWRSGEQLLDVAGL-------------TTDR---VNDVSLRVRRGEVLGIAGLMGAGR 295
Cdd:PRK15134 252 YTQKLLNSEPSGDPV------PLPEPASPLLDVEQLqvafpirkgilkrTVDHnvvVKNISFTLRPGETLGLVGESGSGK 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 296 SELAKAIVgydRRIA--GTIAMNGVPV--------LPNSPHAAIVagigFAPEDRKHEALLLFRSILDNaALCVPDKTSS 365
Cdd:PRK15134 326 STTGLALL---RLINsqGEIWFDGQPLhnlnrrqlLPVRHRIQVV----FQDPNSSLNPRLNVLQIIEE-GLRVHQPTLS 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 366 FGFFNRR--KAMEIVSpLAAKMSIKAPnldeqvSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDE 443
Cdd:PRK15134 398 AAQREQQviAVMEEVG-LDPETRHRYP------AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKS 470
|
490 500 510
....*....|....*....|....*....|....
gi 81855249 444 LAAS-GIGIILISSEMPELIGLADRVLVMAGGRI 476
Cdd:PRK15134 471 LQQKhQLAYLFISHDLHVVRALCHQVIVLRQGEV 504
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
9-229 |
7.32e-23 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 97.51 E-value: 7.32e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 9 LDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDSHRAGIRVIHQ 88
Cdd:PRK11264 6 VKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 89 EPEIV-------PNLTVAENIFVGEL-----PRLAGVLLDwRKLeeqtdrvLATFGM--QQDMRPRQLCGtlgpAQRQMI 154
Cdd:PRK11264 86 HVGFVfqnfnlfPHRTVLENIIEGPVivkgePKEEATARA-REL-------LAKVGLagKETSYPRRLSG----GQQQRV 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 81855249 155 EIMRAIRAGGRLIAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSPA 229
Cdd:PRK11264 154 AIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPA 228
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
37-228 |
1.08e-22 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 98.72 E-value: 1.08e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 37 LVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPrdsHRAGIRVIHQEPEIVPNLTVAENIFVGelprlagvlLD 116
Cdd:TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP---HLRHINMVFQSYALFPHMTVEENVAFG---------LK 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 117 WRKL--EEQTDRVLATFGMQQ-----DMRPRQLCGtlgpAQRQMIEIMRAIRAGGRLIAFDEPTSSLtDDEARRLFS--V 187
Cdd:TIGR01187 69 MRKVprAEIKPRVLEALRLVQleefaDRKPHQLSG----GQQQRVALARALVFKPKILLLDEPLSAL-DKKLRDQMQleL 143
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 81855249 188 VRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLV-DDSP 228
Cdd:TIGR01187 144 KTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAqIGTP 185
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
257-489 |
1.71e-22 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 96.20 E-value: 1.71e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 257 SGEQLLDVAGLTT---DRV--NDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHA--AI 329
Cdd:COG1127 1 MSEPMIEVRNLTKsfgDRVvlDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSEKElyEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 330 VAGIGFapedrkheallLFR--------SILDNAALCVPDKTSsfgfFNRRKAMEIVsplaaKMSIKAPNLDEQVSK--- 398
Cdd:COG1127 81 RRRIGM-----------LFQggalfdslTVFENVAFPLREHTD----LSEAEIRELV-----LEKLELVGLPGAADKmps 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 399 -LSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDEL-AASGIGIILISSEMPELIGLADRVLVMAGGRI 476
Cdd:COG1127 141 eLSGGMRKRVALARALALDPEILLYDEPTAGLDPITSAVIDELIRELrDELGLTSVVVTHDLDSAFAIADRVAVLADGKI 220
|
250
....*....|...
gi 81855249 477 TAELARPDIDEAT 489
Cdd:COG1127 221 IAEGTPEELLASD 233
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
8-224 |
2.13e-22 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 94.04 E-value: 2.13e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRhgstpiVFGEPrdshragirvIH 87
Cdd:cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL------LDGKD----------LA 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 88 QEPEIvpnltvaenifvgELPRLAGVLLdwrkleeQtdrVLATFGMqQDMRPRQlCGTLGPAQRQMIEIMRAIRAGGRLI 167
Cdd:cd03214 65 SLSPK-------------ELARKIAYVP-------Q---ALELLGL-AHLADRP-FNELSGGERQRVLLARALAQEPPIL 119
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 81855249 168 AFDEPTSSLTDDEARRLFSVVRRL-REKGTSIIYISHRLNEIIDLADRIVVLRDGRLV 224
Cdd:cd03214 120 LLDEPTSHLDIAHQIELLELLRRLaRERGKTVVMVLHDLNLAARYADRVILLKDGRIV 177
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
272-479 |
2.34e-22 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 100.68 E-value: 2.34e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPvLPNSPHAAIVAGIGFAPEDrkheALLLFRSI 351
Cdd:COG2274 491 LDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGID-LRQIDPASLRRQIGVVLQD----VFLFSGTI 565
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 352 LDNAALCVPDKTSSfgffnrrkamEIVSplAAKMS-----IKA-PN-----LDEQVSKLSGGNQQKVVLARWLARQPMLL 420
Cdd:COG2274 566 RENITLGDPDATDE----------EIIE--AARLAglhdfIEAlPMgydtvVGEGGSNLSGGQRQRLAIARALLRNPRIL 633
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 81855249 421 ILDEPTRGIDIGAKAEIYRLIDELAAsGIGIILISSEmPELIGLADRVLVMAGGRITAE 479
Cdd:COG2274 634 ILDEATSALDAETEAIILENLRRLLK-GRTVIIIAHR-LSTIRLADRIIVLDKGRIVED 690
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
9-225 |
2.42e-22 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 95.48 E-value: 2.42e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 9 LDGISKRFGVVQaLDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPrdsHRAGIRVIHQ 88
Cdd:cd03299 3 VENLSKDWKEFK-LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP---EKRDISYVPQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 89 EPEIVPNLTVAENIFVGelprLAGVLLDWRKLEEQTDRVLATFGMQQ--DMRPRQLCGtlgpAQRQMIEIMRAIRAGGRL 166
Cdd:cd03299 79 NYALFPHMTVYKNIAYG----LKKRKVDKKEIERKVLEIAEMLGIDHllNRKPETLSG----GEQQRVAIARALVVNPKI 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 81855249 167 IAFDEPTSSL---TDDEARRLFSVVRrlREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVD 225
Cdd:cd03299 151 LLLDEPFSALdvrTKEKLREELKKIR--KEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQ 210
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
272-479 |
2.42e-22 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 95.69 E-value: 2.42e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHAAIVAGIGFAPEdrkhEALLlFR-- 349
Cdd:cd03218 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQ----EASI-FRkl 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 350 SILDN--AALcvpdktsSFGFFNRRKAMEIVSPLAAKMSIkAPNLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTR 427
Cdd:cd03218 91 TVEENilAVL-------EIRGLSKKEREEKLEELLEEFHI-THLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFA 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 81855249 428 GIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRITAE 479
Cdd:cd03218 163 GVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAE 214
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
9-234 |
2.56e-22 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 100.57 E-value: 2.56e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 9 LDGISKRF----GVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVfgEPRDSHRAGIR 84
Cdd:PRK10535 7 LKDIRRSYpsgeEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVA--TLDADALAQLR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 85 -----VIHQEPEIVPNLTVAENIfvgELPRL-AGVLLDWRKLEEQTdrVLATFGMQQ--DMRPRQLCGtlgpAQRQMIEI 156
Cdd:PRK10535 85 rehfgFIFQRYHLLSHLTAAQNV---EVPAVyAGLERKQRLLRAQE--LLQRLGLEDrvEYQPSQLSG----GQQQRVSI 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 81855249 157 MRAIRAGGRLIAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRlNEIIDLADRIVVLRDGRLVDDSPAAGASE 234
Cdd:PRK10535 156 ARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHD-PQVAAQAERVIEIRDGEIVRNPPAQEKVN 232
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
6-230 |
2.78e-22 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 98.76 E-value: 2.78e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 6 FFSLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIvfgEPRDSHRAGIRV 85
Cdd:PRK09536 3 MIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDV---EALSARAASRRV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 86 --IHQEPEIVPNLTVAENIFVGELP---RLAGVL-LDWRKLEEQTDRVLATFGMQQDMRprqlcgTLGPAQRQMIEIMRA 159
Cdd:PRK09536 80 asVPQDTSLSFEFDVRQVVEMGRTPhrsRFDTWTeTDRAAVERAMERTGVAQFADRPVT------SLSGGERQRVLLARA 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81855249 160 IRAGGRLIAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSPAA 230
Cdd:PRK09536 154 LAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPA 224
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
272-479 |
2.98e-22 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 95.13 E-value: 2.98e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSphAAIVAGIGFAPEDRKHEALLLFRSI 351
Cdd:cd03266 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEP--AEARRRLGFVSDSTGLYDRLTAREN 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 352 LdnaalcvpdktssfGFF------NRRKAMEIVSPLAAKMSIKaPNLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEP 425
Cdd:cd03266 99 L--------------EYFaglyglKGDELTARLEELADRLGME-ELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEP 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 81855249 426 TRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRITAE 479
Cdd:cd03266 164 TTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYE 217
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
272-480 |
3.51e-22 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 94.85 E-value: 3.51e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHAAIVagigFapedrKHEALLLFRSI 351
Cdd:cd03293 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYV----F-----QQDALLPWLTV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 352 LDNAALcvPDKtssFGFFNRRKAMEIVSPLAAKMsikapNLDEQVSK----LSGGNQQKVVLARWLARQPMLLILDEPTR 427
Cdd:cd03293 91 LDNVAL--GLE---LQGVPKAEARERAEELLELV-----GLSGFENAyphqLSGGMRQRVALARALAVDPDVLLLDEPFS 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 81855249 428 GIDIGAKAEIYRLIDEL-AASGIGIILISSEMPELIGLADRVLVMAG--GRITAEL 480
Cdd:cd03293 161 ALDALTREQLQEELLDIwRETGKTVLLVTHDIDEAVFLADRVVVLSArpGRIVAEV 216
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
272-479 |
3.75e-22 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 94.21 E-value: 3.75e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPH----AAIVAGIGFAPEDRKHEALLL 347
Cdd:cd03268 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEAlrriGALIEAPGFYPNLTARENLRL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 348 FRSILDnaalcVPDKtssfgffNRRKAMEIVSPLAAKmsikapnlDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTR 427
Cdd:cd03268 96 LARLLG-----IRKK-------RIDEVLDVVGLKDSA--------KKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTN 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 81855249 428 GIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRITAE 479
Cdd:cd03268 156 GLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEE 207
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
14-230 |
4.88e-22 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 95.15 E-value: 4.88e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 14 KRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTV-RHG--STPIVFGeprdshrAGirvihqep 90
Cdd:COG1134 34 TRREEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRVeVNGrvSALLELG-------AG-------- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 91 eIVPNLTVAENIfvgelpRLAGVLLDWRKLE--EQTDRVLAtF----------------GMQqdMRprqlcgtLGPAqrq 152
Cdd:COG1134 99 -FHPELTGRENI------YLNGRLLGLSRKEidEKFDEIVE-FaelgdfidqpvktyssGMR--AR-------LAFA--- 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 153 mieIMRAIRAggRLIAFDEPTSslTDDEA--RRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSPAA 230
Cdd:COG1134 159 ---VATAVDP--DILLVDEVLA--VGDAAfqKKCLARIRELRESGRTVIFVSHSMGAVRRLCDRAIWLEKGRLVMDGDPE 231
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
8-224 |
7.56e-22 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 93.48 E-value: 7.56e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFGVVQ-ALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTvrhgstpIVFGEPRDSHRAGIRVI 86
Cdd:cd03226 1 RIENISFSYKKGTeILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGS-------ILLNGKPIKAKERRKSI 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 87 H---QEPEIvpNL---TVAENIFVGeLPRLAGVlldwrklEEQTDRVLATFGMQ--QDMRPRQLCGtlGPAQRQMIEImr 158
Cdd:cd03226 74 GyvmQDVDY--QLftdSVREELLLG-LKELDAG-------NEQAETVLKDLDLYalKERHPLSLSG--GQKQRLAIAA-- 139
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 81855249 159 AIRAGGRLIAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLV 224
Cdd:cd03226 140 ALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
10-239 |
1.25e-21 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 94.07 E-value: 1.25e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 10 DGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRD--SHRAgirVIH 87
Cdd:PRK13548 6 RNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAElaRRRA---VLP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 88 QEPEIVPNLTVAENIFVGELPRLAGVlldwRKLEEQTDRVLATFGMQQ--DMRPRQLCGtlGPAQRqmIEIMRAI----- 160
Cdd:PRK13548 83 QHSSLSFPFTVEEVVAMGRAPHGLSR----AEDDALVAAALAQVDLAHlaGRDYPQLSG--GEQQR--VQLARVLaqlwe 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 161 -RAGGRLIAFDEPTSSLtdDEAR--RLFSVVRRL-REKGTSIIYISHRLNEIIDLADRIVVLRDGRLV-DDSPAAGASEQ 235
Cdd:PRK13548 155 pDGPPRWLLLDEPTSAL--DLAHqhHVLRLARQLaHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVaDGTPAEVLTPE 232
|
....
gi 81855249 236 TIAK 239
Cdd:PRK13548 233 TLRR 236
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
19-476 |
1.28e-21 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 98.39 E-value: 1.28e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 19 VQALDNVSIAFRPGEVLALVGENGAGKS----TMMRILEGVSGP---DTGTVRHGSTPIV-FGEPRDSHRAGIR-----V 85
Cdd:PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSvtalALMRLLEQAGGLvqcDKMLLRRRSRQVIeLSEQSAAQMRHVRgadmaM 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 86 IHQEP--EIVPNLTVAENIfvGELPRL------------AGVLLDWRKLEEqTDRVLATFgmqqdmrPRQLCGtlGPAQR 151
Cdd:PRK10261 109 IFQEPmtSLNPVFTVGEQI--AESIRLhqgasreeamveAKRMLDQVRIPE-AQTILSRY-------PHQLSG--GMRQR 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 152 QMIEIMRAIRAgGRLIAfDEPTSSLTDDEARRLFSVVRRL-REKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDD---- 226
Cdd:PRK10261 177 VMIAMALSCRP-AVLIA-DEPTTALDVTIQAQILQLIKVLqKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETgsve 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 227 ----SPAAGASEQTIAKL-----MVGRNIDDLFT---------------RETWRSGEQLLDVAGLTT------------- 269
Cdd:PRK10261 255 qifhAPQHPYTRALLAAVpqlgaMKGLDYPRRFPlislehpakqeppieQDTVVDGEPILQVRNLVTrfplrsgllnrvt 334
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 270 ---DRVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNG--VPVLPNSPHAAIVAGIGFAPEDRKheA 344
Cdd:PRK10261 335 revHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGqrIDTLSPGKLQALRRDIQFIFQDPY--A 412
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 345 LLLFRSILDNAALcvpDKTSSFGFFNRRKAMEIVSPLAAKMSIKAPNLDEQVSKLSGGNQQKVVLARWLARQPMLLILDE 424
Cdd:PRK10261 413 SLDPRQTVGDSIM---EPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADE 489
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 81855249 425 PTRGIDIGAKAEIYRLIDELAAS-GIGIILISSEMPELIGLADRVLVMAGGRI 476
Cdd:PRK10261 490 AVSALDVSIRGQIINLLLDLQRDfGIAYLFISHDMAVVERISHRVAVMYLGQI 542
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
12-224 |
1.73e-21 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 93.86 E-value: 1.73e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 12 ISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVF---GEPRDSHRAGIRVIHQ 88
Cdd:cd03294 30 ILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAmsrKELRELRRKKISMVFQ 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 89 EPEIVPNLTVAENIFVGElpRLAGVLLDWRklEEQTDRVLATFGM--QQDMRPRQLCGtlgpAQRQMIEIMRAIRAGGRL 166
Cdd:cd03294 110 SFALLPHRTVLENVAFGL--EVQGVPRAER--EERAAEALELVGLegWEHKYPDELSG----GMQQRVGLARALAVDPDI 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 167 IAFDEPTSSLtDDEARR-LFSVVRRL-REKGTSIIYISHRLNEIIDLADRIVVLRDGRLV 224
Cdd:cd03294 182 LLMDEAFSAL-DPLIRReMQDELLRLqAELQKTIVFITHDLDEALRLGDRIAIMKDGRLV 240
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
265-476 |
2.14e-21 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 91.12 E-value: 2.14e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 265 AGLTTDRVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPhAAIVAGIGFAPEDrkheA 344
Cdd:cd03246 11 PGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDP-NELGDHVGYLPQD----D 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 345 LLLFRSILDNAalcvpdktssfgffnrrkameivsplaakmsikapnldeqvskLSGGNQQKVVLARWLARQPMLLILDE 424
Cdd:cd03246 86 ELFSGSIAENI-------------------------------------------LSGGQRQRLGLARALYGNPRILVLDE 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 81855249 425 PTRGIDIGAKAEIYRLIDELAASGIGIILISSEmPELIGLADRVLVMAGGRI 476
Cdd:cd03246 123 PNSHLDVEGERALNQAIAALKAAGATRIVIAHR-PETLASADRILVLEDGRV 173
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
22-241 |
2.85e-21 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 97.13 E-value: 2.85e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 22 LDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDSHRagirviH-----QEPEIVPNl 96
Cdd:COG4618 348 LRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQWDREELGR------HigylpQDVELFDG- 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 97 TVAENI--F-------VGELPRLAGV---LLdwrKLEEQTDRVLATFGMqqdmrprqlcgTLGPAQRQMIEIMRAIRAGG 164
Cdd:COG4618 421 TIAENIarFgdadpekVVAAAKLAGVhemIL---RLPDGYDTRIGEGGA-----------RLSGGQRQRIGLARALYGDP 486
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 81855249 165 RLIAFDEPTSSLtDDEARR-LFSVVRRLREKGTSIIYISHRLNeIIDLADRIVVLRDGRLVddspAAGASEQTIAKLM 241
Cdd:COG4618 487 RLVVLDEPNSNL-DDEGEAaLAAAIRALKARGATVVVITHRPS-LLAAVDKLLVLRDGRVQ----AFGPRDEVLARLA 558
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
8-230 |
2.87e-21 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 93.13 E-value: 2.87e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVfGEPrdSH---RAGIR 84
Cdd:PRK11300 7 SVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIE-GLP--GHqiaRMGVV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 85 VIHQEPEIVPNLTVAENIFVG-----ELPRLAGVLL--DWRKLE-EQTDRvlATFGMQQ----DMRPRQlCGTLGPAQRQ 152
Cdd:PRK11300 84 RTFQHVRLFREMTVIENLLVAqhqqlKTGLFSGLLKtpAFRRAEsEALDR--AATWLERvgllEHANRQ-AGNLAYGQQR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 153 MIEIMRAIRAGGRLIAFDEPTSSLTDDEARRLFSVVRRLR-EKGTSIIYISHRLNEIIDLADRIVVLRDGR-LVDDSPAA 230
Cdd:PRK11300 161 RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRnEHNVTVLLIEHDMKLVMGISDRIYVVNQGTpLANGTPEE 240
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
272-476 |
2.90e-21 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 92.18 E-value: 2.90e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHAAivAGIGFAPEDRkheALLLFRSI 351
Cdd:cd03263 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAAR--QSLGYCPQFD---ALFDELTV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 352 LDNAALCVPDKtssfGFfNRRKAMEIVSPLAAKMSIKaPNLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDI 431
Cdd:cd03263 93 REHLRFYARLK----GL-PKSEIKEEVELLLRVLGLT-DKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDP 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 81855249 432 GAKAEIYRLIDELaASGIGIILISSEMPELIGLADRVLVMAGGRI 476
Cdd:cd03263 167 ASRRAIWDLILEV-RKGRSIILTTHSMDEAEALCDRIAIMSDGKL 210
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
1-229 |
2.94e-21 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 94.41 E-value: 2.94e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 1 MTQSDFFSLDGISKRF-----------GVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTP 69
Cdd:COG4608 2 AMAEPLLEVRDLKKHFpvrgglfgrtvGVVKAVDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 70 IVFGEPRD--SHRAGIRVIHQEP--EIVPNLTVAENIfvGELPRLAGvLLDWRKLEEQTDRVLATFGMQQDMR---PRQL 142
Cdd:COG4608 82 ITGLSGRElrPLRRRMQMVFQDPyaSLNPRMTVGDII--AEPLRIHG-LASKAERRERVAELLELVGLRPEHAdryPHEF 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 143 CGtlgpAQRQMIEIMRAIRAGGRLIAFDEPTSSLtdD---EArrlfSVV---RRLREK-GTSIIYISHRLNEIIDLADRI 215
Cdd:COG4608 159 SG----GQRQRIGIARALALNPKLIVCDEPVSAL--DvsiQA----QVLnllEDLQDElGLTYLFISHDLSVVRHISDRV 228
|
250
....*....|....
gi 81855249 216 VVLRDGRLVDDSPA 229
Cdd:COG4608 229 AVMYLGKIVEIAPR 242
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
8-238 |
2.95e-21 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 94.10 E-value: 2.95e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIvfgePRDSHRAGIR--V 85
Cdd:PRK13537 9 DFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPV----PSRARHARQRvgV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 86 IHQEPEIVPNLTVAENIFV---------GELPRLAGVLLDWRKLEEQTdrvlatfgmqqDMRPRQLCGTLgpaqRQMIEI 156
Cdd:PRK13537 85 VPQFDNLDPDFTVRENLLVfgryfglsaAAARALVPPLLEFAKLENKA-----------DAKVGELSGGM----KRRLTL 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 157 MRAIRAGGRLIAFDEPTSSLtDDEARRL-FSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVddspAAGASEQ 235
Cdd:PRK13537 150 ARALVNDPDVLVLDEPTTGL-DPQARHLmWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKI----AEGAPHA 224
|
...
gi 81855249 236 TIA 238
Cdd:PRK13537 225 LIE 227
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
8-226 |
3.39e-21 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 92.55 E-value: 3.39e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFGV--VQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPrDSHRAGIRV 85
Cdd:cd03252 2 TFEHVRFRYKPdgPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADP-AWLRRQVGV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 86 IHQEpEIVPNLTVAENIFVG----------ELPRLAGVLLDWRKLEEQTDRVLATFGMqqdmrprqlcgTLGPAQRQMIE 155
Cdd:cd03252 81 VLQE-NVLFNRSIRDNIALAdpgmsmerviEAAKLAGAHDFISELPEGYDTIVGEQGA-----------GLSGGQRQRIA 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81855249 156 IMRAIRAGGRLIAFDEPTSSLTDDEARRLFSVVRRLReKGTSIIYISHRLNEIIDlADRIVVLRDGRLVDD 226
Cdd:cd03252 149 IARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLSTVKN-ADRIIVMEKGRIVEQ 217
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
272-490 |
4.23e-21 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 93.72 E-value: 4.23e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHAAIVAGI-----GFAPEDRKHEALL 346
Cdd:PRK13537 23 VDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVvpqfdNLDPDFTVRENLL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 347 LFrsildnaalcvpdkTSSFGFfNRRKAMEIVSPLA--AKMSIKApnlDEQVSKLSGGNQQKVVLARWLARQPMLLILDE 424
Cdd:PRK13537 103 VF--------------GRYFGL-SAAAARALVPPLLefAKLENKA---DAKVGELSGGMKRRLTLARALVNDPDVLVLDE 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 81855249 425 PTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRITAELARPDIDEATI 490
Cdd:PRK13537 165 PTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIESEI 230
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
272-479 |
4.29e-21 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 92.41 E-value: 4.29e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPvLPNSPHAAIVAGIGFAPEDRKHEALLlfrSI 351
Cdd:COG1120 17 LDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRD-LASLSRRELARRIAYVPQEPPAPFGL---TV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 352 LDNAAL-CVPdKTSSFGFFNR------RKAMEIV--SPLAakmsikapnlDEQVSKLSGGNQQKVVLARWLARQPMLLIL 422
Cdd:COG1120 93 RELVALgRYP-HLGLFGRPSAedreavEEALERTglEHLA----------DRPVDELSGGERQRVLIARALAQEPPLLLL 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 81855249 423 DEPTRGIDIGAKAEIYRLIDELAAS-GIGIILISSEMPELIGLADRVLVMAGGRITAE 479
Cdd:COG1120 162 DEPTSHLDLAHQLEVLELLRRLARErGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQ 219
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
274-476 |
5.68e-21 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 91.63 E-value: 5.68e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 274 DVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPhaaIVAGIGFAPEDRkheALLLFRSILD 353
Cdd:cd03299 17 NVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP---EKRDISYVPQNY---ALFPHMTVYK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 354 NAAlcvpdktssFGFFNR--------RKAMEIvsplAAKMSIkAPNLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEP 425
Cdd:cd03299 91 NIA---------YGLKKRkvdkkeieRKVLEI----AEMLGI-DHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEP 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 81855249 426 TRGIDIGAKAEIYRLIDEL-AASGIGIILISSEMPELIGLADRVLVMAGGRI 476
Cdd:cd03299 157 FSALDVRTKEKLREELKKIrKEFGVTVLHVTHDFEEAWALADKVAIMLNGKL 208
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
1-228 |
6.23e-21 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 94.24 E-value: 6.23e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 1 MTQSDFFSLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPI--VFGEPRDs 78
Cdd:PRK09452 9 SSLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDIthVPAENRH- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 79 hragIRVIHQEPEIVPNLTVAENIFVGelprlagvlLDWRKL--EEQTDRVLATFGMQQ-----DMRPRQLCGtlgpAQR 151
Cdd:PRK09452 88 ----VNTVFQSYALFPHMTVFENVAFG---------LRMQKTpaAEITPRVMEALRMVQleefaQRKPHQLSG----GQQ 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 152 QMIEIMRAIRAGGRLIAFDEPTSSLtDDEARR-LFSVVRRL-REKGTSIIYISHRLNEIIDLADRIVVLRDGRLV-DDSP 228
Cdd:PRK09452 151 QRVAIARAVVNKPKVLLLDESLSAL-DYKLRKqMQNELKALqRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEqDGTP 229
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
276-488 |
6.39e-21 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 91.35 E-value: 6.39e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 276 SLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHAAIVAgigfapedrkhealLLFR------ 349
Cdd:COG3840 19 DLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTALPPAERPVS--------------MLFQennlfp 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 350 --SILDNAALCV-PD-KTSSFgffNRRKAMEIvsplAAKMSIkAPNLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEP 425
Cdd:COG3840 85 hlTVAQNIGLGLrPGlKLTAE---QRAQVEQA----LERVGL-AGLLDRLPGQLSGGQRQRVALARCLVRKRPILLLDEP 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 81855249 426 TRGIDIGAKAEIYRLIDELAAS-GIGIILISSEMPELIGLADRVLVMAGGRI-----TAELARPDIDEA 488
Cdd:COG3840 157 FSALDPALRQEMLDLVDELCRErGLTVLMVTHDPEDAARIADRVLLVADGRIaadgpTAALLDGEPPPA 225
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
272-479 |
7.64e-21 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 91.49 E-value: 7.64e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPV--LPNSPHAAIVAGIG--FapedrKHEALLL 347
Cdd:cd03258 21 LKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLtlLSGKELRKARRRIGmiF-----QHFNLLS 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 348 FRSILDNAALcvpdktssfgffnrrkAMEIVSPLAAKMSIKAPNLDEQV----------SKLSGGNQQKVVLARWLARQP 417
Cdd:cd03258 96 SRTVFENVAL----------------PLEIAGVPKAEIEERVLELLELVgledkadaypAQLSGGQKQRVGIARALANNP 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 81855249 418 MLLILDEPTRGIDIGAKAEIYRLIDELAAS-GIGIILISSEMPELIGLADRVLVMAGGRITAE 479
Cdd:cd03258 160 KVLLCDEATSALDPETTQSILALLRDINRElGLTIVLITHEMEVVKRICDRVAVMEKGEVVEE 222
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
282-476 |
9.09e-21 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 90.43 E-value: 9.09e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 282 GEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSphaaivAGIGFAPEDRKheALLLFRsildNAALcvpd 361
Cdd:cd03297 23 EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSR------KKINLPPQQRK--IGLVFQ----QYAL---- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 362 ktssFGFFNRRKAMEIVSPLAAKMSIK------------APNLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGI 429
Cdd:cd03297 87 ----FPHLNVRENLAFGLKRKRNREDRisvdelldllglDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 81855249 430 DIGAKAEIYRLIDELAAS-GIGIILISSEMPELIGLADRVLVMAGGRI 476
Cdd:cd03297 163 DRALRLQLLPELKQIKKNlNIPVIFVTHDLSEAEYLADRIVVMEDGRL 210
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
272-476 |
1.54e-20 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 89.86 E-value: 1.54e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPV--LPNSPHAAIVA-GIGFAPEDRKheaLLLF 348
Cdd:cd03255 20 LKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDIskLSEKELAAFRRrHIGFVFQSFN---LLPD 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 349 RSILDNAALcvPDK-TSSFGFFNRRKAMEivspLAAKMSIKApNLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTR 427
Cdd:cd03255 97 LTALENVEL--PLLlAGVPKKERRERAEE----LLERVGLGD-RLNHYPSELSGGQQQRVAIARALANDPKIILADEPTG 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 81855249 428 GIDIGAKAEIYRLIDELAA-SGIGIILISSEmPELIGLADRVLVMAGGRI 476
Cdd:cd03255 170 NLDSETGKEVMELLRELNKeAGTTIVVVTHD-PELAEYADRIIELRDGKI 218
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
9-224 |
1.66e-20 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 89.86 E-value: 1.66e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 9 LDGISKRFGVvQALDnVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDShraGIRVIHQ 88
Cdd:cd03298 3 LDKIRFSYGE-QPMH-FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADR---PVSMLFQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 89 EPEIVPNLTVAENIFVGELPRLagvlldwRKLEEQTDRV---LATFGMQQDM--RPRQLCGtlgpAQRQMIEIMRAIRAG 163
Cdd:cd03298 78 ENNLFAHLTVEQNVGLGLSPGL-------KLTAEDRQAIevaLARVGLAGLEkrLPGELSG----GERQRVALARVLVRD 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 81855249 164 GRLIAFDEPTSSLtdDEARR--LFSVVRRL-REKGTSIIYISHRLNEIIDLADRIVVLRDGRLV 224
Cdd:cd03298 147 KPVLLLDEPFAAL--DPALRaeMLDLVLDLhAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIA 208
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
272-475 |
2.24e-20 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 88.21 E-value: 2.24e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPvLPNSPHAAIVAGIGFAPEDrkheALLLFRSI 351
Cdd:cd03228 18 LKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVD-LRDLDLESLRKNIAYVPQD----PFLFSGTI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 352 LDNaalcvpdktssfgffnrrkameivsplaakmsIkapnldeqvskLSGGNQQKVVLARWLARQPMLLILDEPTRGIDI 431
Cdd:cd03228 93 REN--------------------------------I-----------LSGGQRQRIAIARALLRDPPILILDEATSALDP 129
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 81855249 432 GAKAEIYRLIDELAAsGIGIILISSEMpELIGLADRVLVMAGGR 475
Cdd:cd03228 130 ETEALILEALRALAK-GKTVIVIAHRL-STIRDADRIIVLDDGR 171
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
272-483 |
2.65e-20 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 90.53 E-value: 2.65e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHAAIVagigFaPEDRkheaLLLFRSI 351
Cdd:COG1116 27 LDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVTGPGPDRGVV----F-QEPA----LLPWLTV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 352 LDNAALCVPDKTSSfgffnRRKAMEIVSPLAAKMsikapNLDEQVSK----LSGGNQQKVVLARWLARQPMLLILDEPTR 427
Cdd:COG1116 98 LDNVALGLELRGVP-----KAERRERARELLELV-----GLAGFEDAyphqLSGGMRQRVAIARALANDPEVLLMDEPFG 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 81855249 428 GIDIGAKAEIYRLIDEL-AASGIGIILISSEMPELIGLADRVLVMAG--GRITAE----LARP 483
Cdd:COG1116 168 ALDALTRERLQDELLRLwQETGKTVLFVTHDVDEAVFLADRVVVLSArpGRIVEEidvdLPRP 230
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
272-479 |
2.93e-20 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 94.05 E-value: 2.93e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPvLPNSPHAAIVAGIGFAPedrkHEALLLFRSI 351
Cdd:COG4988 353 LDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVD-LSDLDPASWRRQIAWVP----QNPYLFAGTI 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 352 LDNAALCVPDKTSSfgffNRRKAMEIVSplAAKMSIKAPN-LDEQV----SKLSGGNQQKVVLARWLARQPMLLILDEPT 426
Cdd:COG4988 428 RENLRLGRPDASDE----ELEAALEAAG--LDEFVAALPDgLDTPLgeggRGLSGGQAQRLALARALLRDAPLLLLDEPT 501
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 81855249 427 RGIDIGAKAEIYRLIDELAASgiGIILISSEMPELIGLADRVLVMAGGRITAE 479
Cdd:COG4988 502 AHLDAETEAEILQALRRLAKG--RTVILITHRLALLAQADRILVLDDGRIVEQ 552
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
21-238 |
3.59e-20 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 91.70 E-value: 3.59e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 21 ALDnVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDS---HRAGIRVIHQEPEIVPNLT 97
Cdd:COG4148 15 TLD-VDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGEVLQDSARGIFlppHRRRIGYVFQEARLFPHLS 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 98 VAENIFVGElpRLAGVLLDWRKLeeqtDRVLATFGMQQ--DMRPRQLCGtlgpAQRQMIEIMRAIRAGGRLIAFDEPTSS 175
Cdd:COG4148 94 VRGNLLYGR--KRAPRAERRISF----DEVVELLGIGHllDRRPATLSG----GERQRVAIGRALLSSPRLLLMDEPLAA 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 81855249 176 LtdDEARR--LFSVVRRLREK-GTSIIYISHRLNEIIDLADRIVVLRDGRLVddspAAGASEQTIA 238
Cdd:COG4148 164 L--DLARKaeILPYLERLRDElDIPILYVSHSLDEVARLADHVVLLEQGRVV----ASGPLAEVLS 223
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
21-224 |
3.91e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 90.43 E-value: 3.91e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 21 ALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRhgSTPIVFGEPrdSHRAGIR----VIHQEPEI-VPN 95
Cdd:PRK13644 17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL--VSGIDTGDF--SKLQGIRklvgIVFQNPETqFVG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 96 LTVAENIFVGElprlAGVLLDWRKLEEQTDRVLATFGMQQ--DMRPRQLCGtlgpAQRQMIEIMRAIRAGGRLIAFDEPT 173
Cdd:PRK13644 93 RTVEEDLAFGP----ENLCLPPIEIRKRVDRALAEIGLEKyrHRSPKTLSG----GQGQCVALAGILTMEPECLIFDEVT 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 81855249 174 SSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDlADRIVVLRDGRLV 224
Cdd:PRK13644 165 SMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHD-ADRIIVMDRGKIV 214
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
21-218 |
4.41e-20 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 93.12 E-value: 4.41e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 21 ALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPrDSHRAGIRVIHQEPEIVPNlTVAE 100
Cdd:TIGR02857 337 ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADA-DSWRDQIAWVPQHPFLFAG-TIAE 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 101 NIFVG----------ELPRLAGVLLDWRKLEEQTDRVLatfgmqqDMRPRQLCGtlgpAQRQMIEIMRAIRAGGRLIAFD 170
Cdd:TIGR02857 415 NIRLArpdasdaeirEALERAGLDEFVAALPQGLDTPI-------GEGGAGLSG----GQAQRLALARAFLRDAPLLLLD 483
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 81855249 171 EPTSSLTDDEARRLFSVVRRLREkGTSIIYISHRLnEIIDLADRIVVL 218
Cdd:TIGR02857 484 EPTAHLDAETEAEVLEALRALAQ-GRTVLLVTHRL-ALAALADRIVVL 529
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
20-225 |
4.50e-20 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 90.07 E-value: 4.50e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 20 QALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRhgstpiVFGEPRDSH-----RAGIRVIHQEPeivp 94
Cdd:PRK13635 21 YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTIT------VGGMVLSEEtvwdvRRQVGMVFQNP---- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 95 nltvaENIFVGE--------------LPRLAGVlldwRKLEEQTDRVlatfGMQQ--DMRPRQLCGtlGPAQRQMIEIMR 158
Cdd:PRK13635 91 -----DNQFVGAtvqddvafglenigVPREEMV----ERVDQALRQV----GMEDflNREPHRLSG--GQKQRVAIAGVL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 81855249 159 AIRAggRLIAFDEPTSSLtDDEARR-LFSVVRRLREKGT-SIIYISHRLNEIIDlADRIVVLRDGRLVD 225
Cdd:PRK13635 156 ALQP--DIIILDEATSML-DPRGRReVLETVRQLKEQKGiTVLSITHDLDEAAQ-ADRVIVMNKGEILE 220
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
9-235 |
5.30e-20 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 91.05 E-value: 5.30e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 9 LDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVrhgstpIVFGEPRDSH----RAGIR 84
Cdd:PRK13536 44 LAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI------TVLGVPVPARarlaRARIG 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 85 VIHQEPEIVPNLTVAENIFV-GELPRLAGvlldwRKLEEQTDRVL--ATFGMQQDMRPRQLCGTLgpaqRQMIEIMRAIR 161
Cdd:PRK13536 118 VVPQFDNLDLEFTVRENLLVfGRYFGMST-----REIEAVIPSLLefARLESKADARVSDLSGGM----KRRLTLARALI 188
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 81855249 162 AGGRLIAFDEPTSSLtDDEARRL-FSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGR-LVDDSPAAGASEQ 235
Cdd:PRK13536 189 NDPQLLILDEPTTGL-DPHARHLiWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRkIAEGRPHALIDEH 263
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
19-223 |
7.62e-20 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 87.85 E-value: 7.62e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 19 VQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPI--VFGEPRDSHRAGIRVIHQEPEIVPNL 96
Cdd:cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVsdLRGRAIPYLRRKIGVVFQDFRLLPDR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 97 TVAENI-----FVGELPRlagvllDWRKleeQTDRVLATFGMQQDMR--PRQLCGtlGPAQRqmIEIMRAIRAGGRLIAF 169
Cdd:cd03292 94 NVYENVafaleVTGVPPR------EIRK---RVPAALELVGLSHKHRalPAELSG--GEQQR--VAIARAIVNSPTILIA 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 81855249 170 DEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRL 223
Cdd:cd03292 161 DEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
14-230 |
8.67e-20 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 92.44 E-value: 8.67e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 14 KRFGVVQALDNVSIAFRPGEVLALVGENGAGKST----MMRILegvsgPDTGTVRHGSTPIVFGEPRD--SHRAGIRVIH 87
Cdd:COG4172 294 RTVGHVKAVDGVSLTLRRGETLGLVGESGSGKSTlglaLLRLI-----PSEGEIRFDGQDLDGLSRRAlrPLRRRMQVVF 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 88 QEP--EIVPNLTVAEnIfVGELPRLAGVLLDWRKLEEQTDRVLATFGMQQDMR---PRQLCGtlgpAQRQMIEIMRAIRA 162
Cdd:COG4172 369 QDPfgSLSPRMTVGQ-I-IAEGLRVHGPGLSAAERRARVAEALEEVGLDPAARhryPHEFSG----GQRQRIAIARALIL 442
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 81855249 163 GGRLIAFDEPTSSLtDdearrlFSV-------VRRL-REKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSPAA 230
Cdd:COG4172 443 EPKLLVLDEPTSAL-D------VSVqaqildlLRDLqREHGLAYLFISHDLAVVRALAHRVMVMKDGKVVEQGPTE 511
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
8-225 |
8.95e-20 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 88.53 E-value: 8.95e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDShrAGIRVIH 87
Cdd:PRK11124 4 QLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSD--KAIRELR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 88 QEPEIV-------PNLTVAENIFvgELP-RLAGvlLDWRKLEEQTDRVLATFGMQQ--DMRPRQLCGtlgpAQRQMIEIM 157
Cdd:PRK11124 82 RNVGMVfqqynlwPHLTVQQNLI--EAPcRVLG--LSKDQALARAEKLLERLRLKPyaDRFPLHLSG----GQQQRVAIA 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 81855249 158 RAIRAGGRLIAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVD 225
Cdd:PRK11124 154 RALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVE 221
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
272-478 |
1.21e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 88.89 E-value: 1.21e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPV-LPNSPHAAIVAGIGFAPEDRKHEALllfrS 350
Cdd:PRK13632 25 LKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITIsKENLKEIRKKIGIIFQNPDNQFIGA----T 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 351 ILDNAAlcvpdktssFGFFNR---RKAM-EIVSPLAAKMSIKApNLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPT 426
Cdd:PRK13632 101 VEDDIA---------FGLENKkvpPKKMkDIIDDLAKKVGMED-YLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDEST 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 81855249 427 RGIDIGAKAEIYRLIDELAASGIG-IILISSEMPELIgLADRVLVMAGGRITA 478
Cdd:PRK13632 171 SMLDPKGKREIKKIMVDLRKTRKKtLISITHDMDEAI-LADKVIVFSEGKLIA 222
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
272-479 |
1.26e-19 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 87.43 E-value: 1.26e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSphAAIVAGIGFAPEDRK-HEALLLFRS 350
Cdd:cd03265 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREP--REVRRRIGIVFQDLSvDDELTGWEN 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 351 ILDNAALcvpdktssFGFFNRRKAMEIVSPLAAKMSIKAPnlDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGID 430
Cdd:cd03265 94 LYIHARL--------YGVPGAERRERIDELLDFVGLLEAA--DRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLD 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 81855249 431 IGAKAEIYRLIDEL-AASGIGIILISSEMPELIGLADRVLVMAGGRITAE 479
Cdd:cd03265 164 PQTRAHVWEYIEKLkEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAE 213
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
9-235 |
1.30e-19 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 88.53 E-value: 1.30e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 9 LDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRH----GSTPIVFGE-PRD--SHRA 81
Cdd:PRK09984 7 VEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHiellGRTVQREGRlARDirKSRA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 82 GIRVIHQEPEIVPNLTVAENIFVGEL--PRLAGVLLDW--RKLEEQTDRVLATFGMQQDMRPRqlCGTLGPAQRQMIEIM 157
Cdd:PRK09984 87 NTGYIFQQFNLVNRLSVLENVLIGALgsTPFWRTCFSWftREQKQRALQALTRVGMVHFAHQR--VSTLSGGQQQRVAIA 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 81855249 158 RAIRAGGRLIAFDEPTSSLTDDEARRLFSVVRRLREK-GTSIIYISHRLNEIIDLADRIVVLRDGRLVDDspaaGASEQ 235
Cdd:PRK09984 165 RALMQQAKVILADEPIASLDPESARIVMDTLRDINQNdGITVVVTLHQVDYALRYCERIVALRQGHVFYD----GSSQQ 239
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
9-223 |
1.35e-19 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 88.20 E-value: 1.35e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 9 LDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIvfGEPRDShragIRVIHQ 88
Cdd:PRK11247 15 LNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPL--AEARED----TRLMFQ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 89 EPEIVPNLTVAENIFVGelprLAGvllDWRkleEQTDRVLATFGMQQdmRPRQLCGTLGPAQRQMIEIMRAIRAGGRLIA 168
Cdd:PRK11247 89 DARLLPWKKVIDNVGLG----LKG---QWR---DAALQALAAVGLAD--RANEWPAALSGGQKQRVALARALIHRPGLLL 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 81855249 169 FDEP---TSSLTDDEARRLfsVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRL 223
Cdd:PRK11247 157 LDEPlgaLDALTRIEMQDL--IESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
272-479 |
1.83e-19 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 88.63 E-value: 1.83e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVG---YDrriAGTIAMNGVPVlpnspHAAIVAGIGFAPEDRKheallLF 348
Cdd:COG4152 17 VDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGilaPD---SGEVLWDGEPL-----DPEDRRRIGYLPEERG-----LY 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 349 R--SILDNAAlcvpdktssfgFFNRRKAMeivSPLAAKMSIK--------APNLDEQVSKLSGGNQQKVVLARWLARQPM 418
Cdd:COG4152 84 PkmKVGEQLV-----------YLARLKGL---SKAEAKRRADewlerlglGDRANKKVEELSKGNQQKVQLIAALLHDPE 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81855249 419 LLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRITAE 479
Cdd:COG4152 150 LLILDEPFSGLDPVNVELLKDVIRELAAKGTTVIFSSHQMELVEELCDRIVIINKGRKVLS 210
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
272-476 |
1.83e-19 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 87.39 E-value: 1.83e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVlpnSPHAAIVAGIGFApedRKHEALLLFRSI 351
Cdd:cd03296 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDA---TDVPVQERNVGFV---FQHYALFRHMTV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 352 LDNAAlcvpdktssFGFFNRRKAMEivsPLAAKMSIKAPNLDEQV----------SKLSGGNQQKVVLARWLARQPMLLI 421
Cdd:cd03296 92 FDNVA---------FGLRVKPRSER---PPEAEIRAKVHELLKLVqldwladrypAQLSGGQRQRVALARALAVEPKVLL 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 81855249 422 LDEPTRGIDIGAKAE----IYRLIDELaasGIGIILISSEMPELIGLADRVLVMAGGRI 476
Cdd:cd03296 160 LDEPFGALDAKVRKElrrwLRRLHDEL---HVTTVFVTHDQEEALEVADRVVVMNKGRI 215
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
21-224 |
1.86e-19 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 87.29 E-value: 1.86e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 21 ALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIvfgepRD----SHRAGIRVIHQEPeIVPNL 96
Cdd:cd03251 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDV-----RDytlaSLRRQIGLVSQDV-FLFND 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 97 TVAENIFVG----------ELPRLAGVLLDWRKLEEQTDRVLATFGMQqdmrprqlcgtLGPAQRQMIEIMRAIRAGGRL 166
Cdd:cd03251 91 TVAENIAYGrpgatreeveEAARAANAHEFIMELPEGYDTVIGERGVK-----------LSGGQRQRIAIARALLKDPPI 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 81855249 167 IAFDEPTSSLtDDEARRLFS-VVRRLREKGTSIIyISHRLNEIIDlADRIVVLRDGRLV 224
Cdd:cd03251 160 LILDEATSAL-DTESERLVQaALERLMKNRTTFV-IAHRLSTIEN-ADRIVVLEDGKIV 215
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
273-476 |
1.88e-19 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 86.81 E-value: 1.88e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 273 NDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHAAIVagigfapedRKHEALL-----L 347
Cdd:cd03262 17 KGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINEL---------RQKVGMVfqqfnL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 348 F--RSILDNAALC------VPDKTSsfgffnRRKAMEIvsplaakmsIKAPNLDEQVSK----LSGGNQQKVVLARWLAR 415
Cdd:cd03262 88 FphLTVLENITLApikvkgMSKAEA------EERALEL---------LEKVGLADKADAypaqLSGGQQQRVAIARALAM 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81855249 416 QPMLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRI 476
Cdd:cd03262 153 NPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
261-475 |
2.01e-19 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 86.38 E-value: 2.01e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 261 LLDVAGLTTDR-----VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPV-LPNSPHAAIVAGIG 334
Cdd:COG4133 2 MLEAENLSCRRgerllFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIrDAREDYRRRLAYLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 335 faPEDRKHEALllfrSILDNAALcvpdktsSFGFFNRRKAMEIVSPLAAKMSIkAPNLDEQVSKLSGGNQQKVVLARWLA 414
Cdd:COG4133 82 --HADGLKPEL----TVRENLRF-------WAALYGLRADREAIDEALEAVGL-AGLADLPVRQLSAGQKRRVALARLLL 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81855249 415 RQPMLLILDEPTRGIDIGAKAEIYRLIDELAASGiGIILISSEMPELIgLADRVLVMAGGR 475
Cdd:COG4133 148 SPAPLWLLDEPFTALDAAGVALLAELIAAHLARG-GAVLLTTHQPLEL-AAARVLDLGDFK 206
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
15-218 |
2.31e-19 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 85.75 E-value: 2.31e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 15 RFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDSHragirvihqEPEIVP 94
Cdd:NF040873 1 GYGGRPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVRRAGGARVAYVPQRSE---------VPDSLP 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 95 nLTVAENIFVGELPRLAGvlldWRKL----EEQTDRVLATFGMQqDMRPRQLcGTLGPAQRQMIEIMRAIRAGGRLIAFD 170
Cdd:NF040873 72 -LTVRDLVAMGRWARRGL----WRRLtrddRAAVDDALERVGLA-DLAGRQL-GELSGGQRQRALLAQGLAQEADLLLLD 144
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 81855249 171 EPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDlADRIVVL 218
Cdd:NF040873 145 EPTTGLDAESRERIIALLAEEHARGATVVVVTHDLELVRR-ADPCVLL 191
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
272-426 |
2.35e-19 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 84.62 E-value: 2.35e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPvLPNSPHAAIVAGIGFAPEDrkhEALLLFRSI 351
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQD-LTDDERKSLRKEIGYVFQD---PQLFPRLTV 76
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 81855249 352 LDNAALcvpdkTSSFGFFNRRKAMEIVSPLAAKMSIKAPN---LDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPT 426
Cdd:pfam00005 77 RENLRL-----GLLLKGLSKREKDARAEEALEKLGLGDLAdrpVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPT 149
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
8-230 |
3.97e-19 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 88.19 E-value: 3.97e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRF----GVVQALDNVSIAFRPGEVLALVGENGAGKST----MMRILEGvSGPDTGTVRHGSTPIVFGEPRDsh 79
Cdd:COG0444 3 EVRNLKVYFptrrGVVKAVDGVSFDVRRGETLGLVGESGSGKSTlaraILGLLPP-PGITSGEILFDGEDLLKLSEKE-- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 80 RAGIR-----VIHQEPE--IVPNLTVAENIfvGELPRLAGVlLDWRKLEEQTDRVLATFGMQQ-----DMRPRQLCGtlG 147
Cdd:COG0444 80 LRKIRgreiqMIFQDPMtsLNPVMTVGDQI--AEPLRIHGG-LSKAEARERAIELLERVGLPDperrlDRYPHELSG--G 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 148 paQRQMIEIMRAIRAGGRLIAFDEPTSSLtdD---EAR--RLFsvvRRL-REKGTSIIYISHRLNEIIDLADRIVVLRDG 221
Cdd:COG0444 155 --MRQRVMIARALALEPKLLIADEPTTAL--DvtiQAQilNLL---KDLqRELGLAILFITHDLGVVAEIADRVAVMYAG 227
|
....*....
gi 81855249 222 RLVDDSPAA 230
Cdd:COG0444 228 RIVEEGPVE 236
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
10-233 |
4.75e-19 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 86.02 E-value: 4.75e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 10 DGISKRF--GVVQA--LDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIvfGEPRDSHRAGIR- 84
Cdd:PRK11629 9 DNLCKRYqeGSVQTdvLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPM--SKLSSAAKAELRn 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 85 ----VIHQEPEIVPNLTVAENIfvgELPRLAGVlLDWRKLEEQTDRVLATFGMQQ--DMRPRQLCGtlgpAQRQMIEIMR 158
Cdd:PRK11629 87 qklgFIYQFHHLLPDFTALENV---AMPLLIGK-KKPAEINSRALEMLAAVGLEHraNHRPSELSG----GERQRVAIAR 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 81855249 159 AIRAGGRLIAFDEPTSSLTDDEARRLFSVVRRL-REKGTSIIYISHRLNeiidLADRI---VVLRDGRLVDDSPAAGAS 233
Cdd:PRK11629 159 ALVNNPRLVLADEPTGNLDARNADSIFQLLGELnRLQGTAFLVVTHDLQ----LAKRMsrqLEMRDGRLTAELSLMGAE 233
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
20-224 |
4.93e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 86.97 E-value: 4.93e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 20 QALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVrhgstpIVFGEPRDSH-----RAGIRVIHQEPEivp 94
Cdd:PRK13632 23 NALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI------KIDGITISKEnlkeiRKKIGIIFQNPD--- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 95 N----LTVAENIFVGelprLAGVLLDWRKLEEQTDRVLATFGMQQ--DMRPRQLCGtlgpAQRQMIEIMRAIRAGGRLIA 168
Cdd:PRK13632 94 NqfigATVEDDIAFG----LENKKVPPKKMKDIIDDLAKKVGMEDylDKEPQNLSG----GQKQRVAIASVLALNPEIII 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 81855249 169 FDEPTSSLTDDEARRLFSVVRRLREKGT-SIIYISHRLNEIIdLADRIVVLRDGRLV 224
Cdd:PRK13632 166 FDESTSMLDPKGKREIKKIMVDLRKTRKkTLISITHDMDEAI-LADKVIVFSEGKLI 221
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
8-237 |
6.10e-19 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 86.29 E-value: 6.10e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRD-SHRagIRVI 86
Cdd:COG4604 3 EIKNVSKRYGGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATTPSRElAKR--LAIL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 87 HQEPEIVPNLTVAENIFVGELPRLAGVL--LDWRKLeeqtDRVLATFGMqQDMRPRQLcGTLGPAQRQMIEIMRAIRAGG 164
Cdd:COG4604 81 RQENHINSRLTVRELVAFGRFPYSKGRLtaEDREII----DEAIAYLDL-EDLADRYL-DELSGGQRQRAFIAMVLAQDT 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 81855249 165 RLIAFDEPTSSLTDDEARRLFSVVRRL-REKGTSIIYISHRLNEIIDLADRIVVLRDGRLVddspAAGASEQTI 237
Cdd:COG4604 155 DYVLLDEPLNNLDMKHSVQMMKLLRRLaDELGKTVVIVLHDINFASCYADHIVAMKDGRVV----AQGTPEEII 224
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
20-227 |
6.55e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 86.76 E-value: 6.55e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 20 QALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVfGEPRDSH----RAGIRVIHQEPEivPN 95
Cdd:PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITIT-HKTKDKYirpvRKRIGMVFQFPE--SQ 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 96 L---TVAENIFVGelPRLAGVLLDwrKLEEQTDRVLATFGMQQDM---RPRQLCGtlgpAQRQMIEIMRAIRAGGRLIAF 169
Cdd:PRK13646 98 LfedTVEREIIFG--PKNFKMNLD--EVKNYAHRLLMDLGFSRDVmsqSPFQMSG----GQMRKIAIVSILAMNPDIIVL 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 81855249 170 DEPTSSLTDDEARRLFSVVRRLR-EKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDS 227
Cdd:PRK13646 170 DEPTAGLDPQSKRQVMRLLKSLQtDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQT 228
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
8-227 |
6.77e-19 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 85.85 E-value: 6.77e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKR-FGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGStpIVFGEPRDSHRAGIRVI 86
Cdd:cd03267 22 SLKSLFKRkYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG--LVPWKRRKKFLRRIGVV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 87 H-QEPEIVPNLTVAENIFVgeLPRLAGvlLDWRKLEEQTDRVLATFGMQQ--DMRPRQLcgTLGpaQRQMIEIMRAIRAG 163
Cdd:cd03267 100 FgQKTQLWWDLPVIDSFYL--LAAIYD--LPPARFKKRLDELSELLDLEEllDTPVRQL--SLG--QRMRAEIAAALLHE 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 81855249 164 GRLIAFDEPTSSLTDDEARRLFSVVRRL-REKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDS 227
Cdd:cd03267 172 PEILFLDEPTIGLDVVAQENIRNFLKEYnRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
7-224 |
9.63e-19 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 84.14 E-value: 9.63e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 7 FSLDGISKRFGVvQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEG--VSGPDTGTVRHGSTPIvfgePRDSHRAGIR 84
Cdd:cd03213 11 VTVKSSPSKSGK-QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGrrTGLGVSGEVLINGRPL----DKRSFRKIIG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 85 VIHQEPEIVPNLTVAENI-FVGELPRLAGvlldwrkleEQTDRVlaTFGMQQDMRPRQLCgtlgpaqrqmieimrairag 163
Cdd:cd03213 86 YVPQDDILHPTLTVRETLmFAAKLRGLSG---------GERKRV--SIALELVSNPSLLF-------------------- 134
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 81855249 164 grliaFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRL-NEIIDLADRIVVLRDGRLV 224
Cdd:cd03213 135 -----LDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPsSEIFELFDKLLLLSQGRVI 191
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
7-225 |
9.68e-19 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 89.25 E-value: 9.68e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 7 FSLDGISkrfgvvQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIvfgepRDSHRAGIR-- 84
Cdd:PRK13657 342 FSYDNSR------QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDI-----RTVTRASLRrn 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 85 --VIHQEPEIVpNLTVAENIFVG-------ELPRLAGVLLDWRKLEEQTDRVLATFGmqqdMRPRQLCGtlgpAQRQMIE 155
Cdd:PRK13657 411 iaVVFQDAGLF-NRSIEDNIRVGrpdatdeEMRAAAERAQAHDFIERKPDGYDTVVG----ERGRQLSG----GERQRLA 481
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 156 IMRAIRAGGRLIAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIyISHRLNEIIDlADRIVVLRDGRLVD 225
Cdd:PRK13657 482 IARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFI-IAHRLSTVRN-ADRILVFDNGRVVE 549
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
11-232 |
1.08e-18 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 85.89 E-value: 1.08e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 11 GISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPI--VFGEPRDSHRAGIRVIHQ 88
Cdd:PRK10419 17 GLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLakLNRAQRKAFRRDIQMVFQ 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 89 EP--EIVPNLTVAENIfvGE-LPRLAGvlLDWRKLEEQTDRVLATFGMQQ---DMRPRQLCGtlgpAQRQMIEIMRAIRA 162
Cdd:PRK10419 97 DSisAVNPRKTVREII--REpLRHLLS--LDKAERLARASEMLRAVDLDDsvlDKRPPQLSG----GQLQRVCLARALAV 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81855249 163 GGRLIAFDEPTSSLTDDEARRLFSVVRRLREK-GTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSPAAGA 232
Cdd:PRK10419 169 EPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQfGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDK 239
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
253-475 |
1.17e-18 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 87.09 E-value: 1.17e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 253 ETWRSGEQLLDVAGL-----TTD----RVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGY---DRRIAGTIAMNGVPV 320
Cdd:PRK09473 4 LAQQQADALLDVKDLrvtfsTPDgdvtAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLlaaNGRIGGSATFNGREI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 321 LpNSPHAAIvagigfaPEDRKHEALLLFRsildnaalcvpDKTSSFGFFNR--RKAMEIVSpLAAKMSiKAPNLDEQVSK 398
Cdd:PRK09473 84 L-NLPEKEL-------NKLRAEQISMIFQ-----------DPMTSLNPYMRvgEQLMEVLM-LHKGMS-KAEAFEESVRM 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 399 L-------------------SGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAAS-GIGIILISSEM 458
Cdd:PRK09473 143 LdavkmpearkrmkmyphefSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREfNTAIIMITHDL 222
|
250
....*....|....*..
gi 81855249 459 PELIGLADRVLVMAGGR 475
Cdd:PRK09473 223 GVVAGICDKVLVMYAGR 239
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
256-476 |
1.20e-18 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 85.77 E-value: 1.20e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 256 RSGEQLLDVAGLTTDrVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLpNSPHAAIVA---- 331
Cdd:cd03294 25 KSKEEILKKTGQTVG-VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIA-AMSRKELRElrrk 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 332 --GIGFapedrKHEALLLFRSILDNAALC-----VPDKTssfgffNRRKAMEIVSPLAAKmsikaPNLDEQVSKLSGGNQ 404
Cdd:cd03294 103 kiSMVF-----QSFALLPHRTVLENVAFGlevqgVPRAE------REERAAEALELVGLE-----GWEHKYPDELSGGMQ 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 81855249 405 QKVVLARWLARQPMLLILDEPTRGID----IGAKAEIYRLIDELaasGIGIILISSEMPELIGLADRVLVMAGGRI 476
Cdd:cd03294 167 QRVGLARALAVDPDILLMDEAFSALDplirREMQDELLRLQAEL---QKTIVFITHDLDEALRLGDRIAIMKDGRL 239
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
19-223 |
1.24e-18 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 84.83 E-value: 1.24e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 19 VQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDSHRAgIRVIHQEPEIVPNlTV 98
Cdd:cd03248 27 TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSK-VSLVGQEPVLFAR-SL 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 99 AENIFVGelprLAGVLLDwrKLEEQTDRVLA-TF--GMQQ------DMRPRQLCGtlgpAQRQMIEIMRAIRAGGRLIAF 169
Cdd:cd03248 105 QDNIAYG----LQSCSFE--CVKEAAQKAHAhSFisELASgydtevGEKGSQLSG----GQKQRVAIARALIRNPQVLIL 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 81855249 170 DEPTSSLtDDEARRLFSVVRRLREKGTSIIYISHRLNeIIDLADRIVVLRDGRL 223
Cdd:cd03248 175 DEATSAL-DAESEQQVQQALYDWPERRTVLVIAHRLS-TVERADQILVLDGGRI 226
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
261-476 |
1.25e-18 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 86.65 E-value: 1.25e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 261 LLDVAGLT----TDR-----VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVG---YDRRIAGTIAMNGVPVLPNSPHA- 327
Cdd:COG0444 1 LLEVRNLKvyfpTRRgvvkaVDGVSFDVRRGETLGLVGESGSGKSTLARAILGllpPPGITSGEILFDGEDLLKLSEKEl 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 328 -AI-VAGIGFAPED-----------RKH--EALLLFRSIldnaalcvpdktssfgffNRRKAMEIVSPLAAKMSIKAPnl 392
Cdd:COG0444 81 rKIrGREIQMIFQDpmtslnpvmtvGDQiaEPLRIHGGL------------------SKAEARERAIELLERVGLPDP-- 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 393 DEQVSK----LSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAAS-GIGIILISSEMPELIGLADR 467
Cdd:COG0444 141 ERRLDRypheLSGGMRQRVMIARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRElGLAILFITHDLGVVAEIADR 220
|
....*....
gi 81855249 468 VLVMAGGRI 476
Cdd:COG0444 221 VAVMYAGRI 229
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
8-224 |
1.43e-18 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 86.67 E-value: 1.43e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRF----GVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVrhgstpIVFGE------PRD 77
Cdd:COG1135 3 ELENLSKTFptkgGPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSV------LVDGVdltalsERE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 78 --SHRAGIRVIHQEPEIVPNLTVAENIfvgELP-RLAGvlldWRKlEEQTDRV---LATFGM--QQDMRPRQLCGtlGpa 149
Cdd:COG1135 77 lrAARRKIGMIFQHFNLLSSRTVAENV---ALPlEIAG----VPK-AEIRKRVaelLELVGLsdKADAYPSQLSG--G-- 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 81855249 150 QRQMIEIMRAIRAGGRLIAFDEPTSSLTDDEARRLFSVVRRLREK-GTSIIYISHRLNEIIDLADRIVVLRDGRLV 224
Cdd:COG1135 145 QKQRVGIARALANNPKVLLCDEATSALDPETTRSILDLLKDINRElGLTIVLITHEMDVVRRICDRVAVLENGRIV 220
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
22-237 |
1.45e-18 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 85.45 E-value: 1.45e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 22 LDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRD--SHRAGIRVIHQEPEivpNLTVA 99
Cdd:PRK11231 18 LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQlaRRLALLPQHHLTPE---GITVR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 100 ENIFVGELPRLAgvllDWRKLEEQtDRVLATFGMQQ----DMRPRQLCgTLGPAQRQMIEIMRAIRAGGRLIAFDEPTSS 175
Cdd:PRK11231 95 ELVAYGRSPWLS----LWGRLSAE-DNARVNQAMEQtrinHLADRRLT-DLSGGQRQRAFLAMVLAQDTPVVLLDEPTTY 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 81855249 176 LTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVddspAAGASEQTI 237
Cdd:PRK11231 169 LDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVM----AQGTPEEVM 226
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
19-225 |
1.86e-18 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 84.51 E-value: 1.86e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 19 VQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDsHRAGIRVIHQEPEIVPNlTV 98
Cdd:cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRW-LRSQIGLVSQEPVLFDG-TI 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 99 AENIFVGELP----------RLAGVLLDWRKLEEQTDRVLATFGMqqdmrprQLCGtlgpAQRQMIEIMRAIRAGGRLIA 168
Cdd:cd03249 94 AENIRYGKPDatdeeveeaaKKANIHDFIMSLPDGYDTLVGERGS-------QLSG----GQKQRIAIARALLRNPKILL 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 81855249 169 FDEPTSSLTDDEARRLFSVVRRLReKGTSIIYISHRLNEIIDlADRIVVLRDGRLVD 225
Cdd:cd03249 163 LDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIRN-ADLIAVLQNGQVVE 217
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
244-476 |
2.76e-18 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 82.98 E-value: 2.76e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 244 RNIDDLFTRETWRSGEQLLdvaglttdrvNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRR--IAGTIAMNGVPVL 321
Cdd:cd03213 7 RNLTVTVKSSPSKSGKQLL----------KNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGlgVSGEVLINGRPLD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 322 PNSPHAAIvagiGFAPEDRKHEALLLFRSILDNAALCvpdktssfgffnrrkameivsplaakmsikapnldeqvSKLSG 401
Cdd:cd03213 77 KRSFRKII----GYVPQDDILHPTLTVRETLMFAAKL--------------------------------------RGLSG 114
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 81855249 402 GNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILI----SSEMpelIGLADRVLVMAGGRI 476
Cdd:cd03213 115 GERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSihqpSSEI---FELFDKLLLLSQGRV 190
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
20-224 |
3.05e-18 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 83.82 E-value: 3.05e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 20 QALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIvfgepR----DSHRAGIRVIHQEpEIVPN 95
Cdd:cd03253 15 PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDI-----RevtlDSLRRAIGVVPQD-TVLFN 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 96 LTVAENIFVG----------ELPRLAGVLLDWRKLEEQTDRVLATFGMQqdmrprqlcgtLGPAQRQMIEIMRAIRAGGR 165
Cdd:cd03253 89 DTIGYNIRYGrpdatdeeviEAAKAAQIHDKIMRFPDGYDTIVGERGLK-----------LSGGEKQRVAIARAILKNPP 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 81855249 166 LIAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIyISHRLNEIIDlADRIVVLRDGRLV 224
Cdd:cd03253 158 ILLLDEATSALDTHTEREIQAALRDVSKGRTTIV-IAHRLSTIVN-ADKIIVLKDGRIV 214
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
22-240 |
3.24e-18 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 87.40 E-value: 3.24e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 22 LDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDSHRAgIRVIHQEPEIVPNlTVAEN 101
Cdd:TIGR01842 334 LRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKH-IGYLPQDVELFPG-TVAEN 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 102 IF----------VGELPRLAGVLLDWRKLEEQTDRVLATFGmqqdmrprqlcGTLGPAQRQMIEIMRAIRAGGRLIAFDE 171
Cdd:TIGR01842 412 IArfgenadpekIIEAAKLAGVHELILRLPDGYDTVIGPGG-----------ATLSGGQRQRIALARALYGDPKLVVLDE 480
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 81855249 172 PTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNeIIDLADRIVVLRDGRLVddspAAGASEQTIAKL 240
Cdd:TIGR01842 481 PNSNLDEEGEQALANAIKALKARGITVVVITHRPS-LLGCVDKILVLQDGRIA----RFGERDEVLAKL 544
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
268-471 |
3.66e-18 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 87.34 E-value: 3.66e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 268 TTDRVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPhAAIVAGIGFAPEdrkhEALLL 347
Cdd:TIGR02857 334 RRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADA-DSWRDQIAWVPQ----HPFLF 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 348 FRSILDNAALCVPDKTSSF--GFFNRRKAMEIVSPLAAKMSIKapnLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEP 425
Cdd:TIGR02857 409 AGTIAENIRLARPDASDAEirEALERAGLDEFVAALPQGLDTP---IGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEP 485
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 81855249 426 TRGIDIGAKAEIYRLIDELaASGIGIILISSEmPELIGLADRVLVM 471
Cdd:TIGR02857 486 TAHLDAETEAEVLEALRAL-AQGRTVLLVTHR-LALAALADRIVVL 529
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
272-476 |
6.04e-18 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 82.61 E-value: 6.04e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAI-----VGYDRRIAGTIAMNGVPVLpnsphaaivaGIGFAPEDRKHEALL 346
Cdd:cd03260 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLnrlndLIPGAPDEGEVLLDGKDIY----------DLDVDVLELRRRVGM 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 347 LFR-------SILDNAALCVPDKTSSfgffNRRKAMEIVSPLAAKMsikapNLDEQVS------KLSGGNQQKVVLARWL 413
Cdd:cd03260 86 VFQkpnpfpgSIYDNVAYGLRLHGIK----LKEELDERVEEALRKA-----ALWDEVKdrlhalGLSGGQQQRLCLARAL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 81855249 414 ARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASgIGIILISSEMPELIGLADRVLVMAGGRI 476
Cdd:cd03260 157 ANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRL 218
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
272-476 |
6.28e-18 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 83.06 E-value: 6.28e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHAAIVaGIGFapedrKHEALLLFRSI 351
Cdd:cd03300 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPV-NTVF-----QNYALFPHLTV 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 352 LDNAAlcvpdktssFGFFNRRKAMEIVSPLAAKMsIKAPNLDEQ----VSKLSGGNQQKVVLARWLARQPMLLILDEPTR 427
Cdd:cd03300 90 FENIA---------FGLRLKKLPKAEIKERVAEA-LDLVQLEGYanrkPSQLSGGQQQRVAIARALVNEPKVLLLDEPLG 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 81855249 428 GIDI----GAKAEIYRLIDELaasGIGIILISSEMPELIGLADRVLVMAGGRI 476
Cdd:cd03300 160 ALDLklrkDMQLELKRLQKEL---GITFVFVTHDQEEALTMSDRIAVMNKGKI 209
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
272-476 |
1.03e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 83.56 E-value: 1.03e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHAAIV---AGIGFA-PEDRkheallL 347
Cdd:PRK13637 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIrkkVGLVFQyPEYQ------L 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 348 FRSILDnaalcvpdKTSSFGFFNR-----------RKAMEIVSPLAAKMSIKAPnldeqvSKLSGGNQQKVVLARWLARQ 416
Cdd:PRK13637 97 FEETIE--------KDIAFGPINLglseeeienrvKRAMNIVGLDYEDYKDKSP------FELSGGQKRRVAIAGVVAME 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81855249 417 PMLLILDEPTRGIDIGAKAEIYRLIDELAAS-GIGIILISSEMPELIGLADRVLVMAGGRI 476
Cdd:PRK13637 163 PKILILDEPTAGLDPKGRDEILNKIKELHKEyNMTIILVSHSMEDVAKLADRIIVMNKGKC 223
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
272-476 |
1.08e-17 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 81.93 E-value: 1.08e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDR---RIAGTIAMNGVPVLPnsphAAIVAGIGFAPE-DRKHEALLL 347
Cdd:cd03234 23 LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEgggTTSGQILFNGQPRKP----DQFQKCVAYVRQdDILLPGLTV 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 348 FRSILDNAALCVPDKTSSFgffNRRKAMEIVSPLAAKMSIKAPNLdeqVSKLSGGNQQKVVLARWLARQPMLLILDEPTR 427
Cdd:cd03234 99 RETLTYTAILRLPRKSSDA---IRKKRVEDVLLRDLALTRIGGNL---VKGISGGERRRVSIAVQLLWDPKVLILDEPTS 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 81855249 428 GIDIGAKAEIYRLIDELAASGiGIILISSEMP--ELIGLADRVLVMAGGRI 476
Cdd:cd03234 173 GLDSFTALNLVSTLSQLARRN-RIVILTIHQPrsDLFRLFDRILLLSSGEI 222
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
272-479 |
1.20e-17 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 82.93 E-value: 1.20e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPnsphaaivagigFAPEDRK---HEALLLF 348
Cdd:TIGR02769 27 LTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQ------------LDRKQRRafrRDVQLVF 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 349 RSildnaalcvpdktsSFGFFNRRKAME--IVSPLAAKMSIKAPNLDEQVS------------------KLSGGNQQKVV 408
Cdd:TIGR02769 95 QD--------------SPSAVNPRMTVRqiIGEPLRHLTSLDESEQKARIAelldmvglrsedadklprQLSGGQLQRIN 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 81855249 409 LARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDEL-AASGIGIILISSEMPELIGLADRVLVMAGGRITAE 479
Cdd:TIGR02769 161 IARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLqQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232
|
|
| NHLM_micro_ABC2 |
TIGR03797 |
NHLM bacteriocin system ABC transporter, ATP-binding protein; Members of this protein family ... |
20-224 |
1.45e-17 |
|
NHLM bacteriocin system ABC transporter, ATP-binding protein; Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes. [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]
Pssm-ID: 274789 [Multi-domain] Cd Length: 686 Bit Score: 85.78 E-value: 1.45e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 20 QALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVfGEPRDSHRAGIRVIHQEPEIVPNlTVA 99
Cdd:TIGR03797 467 LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLA-GLDVQAVRRQLGVVLQNGRLMSG-SIF 544
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 100 ENIFVG---------ELPRLAGVLLDWRKLEEQTDRVLATFGmqqdmrprqlcGTLGPAQRQMIEIMRAIRAGGRLIAFD 170
Cdd:TIGR03797 545 ENIAGGapltldeawEAARMAGLAEDIRAMPMGMHTVISEGG-----------GTLSGGQRQRLLIARALVRKPRILLFD 613
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 81855249 171 EPTSSLtDDEARRLfsVVRRL-REKGTSIIyISHRLNEIIDlADRIVVLRDGRLV 224
Cdd:TIGR03797 614 EATSAL-DNRTQAI--VSESLeRLKVTRIV-IAHRLSTIRN-ADRIYVLDAGRVV 663
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
272-479 |
1.63e-17 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 81.61 E-value: 1.63e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVpvLPNSPHAAIVAGIGFAPEDRKH--------E 343
Cdd:cd03267 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGL--VPWKRRKKFLRRIGVVFGQKTQlwwdlpviD 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 344 ALLLFRSILDnaalcVPDktssFGFFNRRKAmeivspLAAKMSIkAPNLDEQVSKLSGGNQQKVVLARWLARQPMLLILD 423
Cdd:cd03267 115 SFYLLAAIYD-----LPP----ARFKKRLDE------LSELLDL-EELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLD 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 81855249 424 EPTRGIDIGAKAEIYRLIDELAAS-GIGIILISSEMPELIGLADRVLVMAGGRITAE 479
Cdd:cd03267 179 EPTIGLDVVAQENIRNFLKEYNRErGTTVLLTSHYMKDIEALARRVLVIDKGRLLYD 235
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
273-476 |
1.66e-17 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 81.30 E-value: 1.66e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 273 NDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPV--LPNSPHAAIVAGIGFAPEDRKheaLLLFRS 350
Cdd:cd03292 18 DGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVsdLRGRAIPYLRRKIGVVFQDFR---LLPDRN 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 351 ILDNAALcvpdktssfgffnrrkAMEIVSPLAAKMSIKAPNLDEQV----------SKLSGGNQQKVVLARWLARQPMLL 420
Cdd:cd03292 95 VYENVAF----------------ALEVTGVPPREIRKRVPAALELVglshkhralpAELSGGEQQRVAIARAIVNSPTIL 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 81855249 421 ILDEPTRGIDIGAKAEIYRLIDELAASGIGIIlISSEMPELIG-LADRVLVMAGGRI 476
Cdd:cd03292 159 IADEPTGNLDPDTTWEIMNLLKKINKAGTTVV-VATHAKELVDtTRHRVIALERGKL 214
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
9-221 |
1.74e-17 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 83.98 E-value: 1.74e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 9 LDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDSHragIRVIHQ 88
Cdd:PRK10851 5 IANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRK---VGFVFQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 89 EPEIVPNLTVAENIFVG--ELPRL-----------AGVLLDWRKLEEQTDRVlatfgmqqdmrPRQLCGtlgpAQRQMIE 155
Cdd:PRK10851 82 HYALFRHMTVFDNIAFGltVLPRRerpnaaaikakVTQLLEMVQLAHLADRY-----------PAQLSG----GQKQRVA 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 81855249 156 IMRAIRAGGRLIAFDEPTSSLtDDEARR-LFSVVRRLRE--KGTSiIYISHRLNEIIDLADRIVVLRDG 221
Cdd:PRK10851 147 LARALAVEPQILLLDEPFGAL-DAQVRKeLRRWLRQLHEelKFTS-VFVTHDQEEAMEVADRVVVMSQG 213
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
274-493 |
2.68e-17 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 83.24 E-value: 2.68e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 274 DVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVpVLPNSPhaaivAGIGFAPEDRK-----HEALLL- 347
Cdd:TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGR-TLFDSR-----KGIFLPPEKRRigyvfQEARLFp 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 348 FRSILDNAALCVPDKTSSFGFFNRRKAMEI--VSPLaakmsikapnLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEP 425
Cdd:TIGR02142 89 HLSVRGNLRYGMKRARPSERRISFERVIELlgIGHL----------LGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEP 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 426 TRGIDIGAKAEIYRLIDELAAS-GIGIILISSEMPELIGLADRVLVMAGGRITAE------LARPD-----------IDE 487
Cdd:TIGR02142 159 LAALDDPRKYEILPYLERLHAEfGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAgpiaevWASPDlpwlaredqgsLIE 238
|
....*.
gi 81855249 488 ATILKH 493
Cdd:TIGR02142 239 GVVAEH 244
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
19-224 |
3.19e-17 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 84.77 E-value: 3.19e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 19 VQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDSHRAgIRVIHQEPeIVPNLTV 98
Cdd:TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQ-VALVGQEP-VLFSGSV 571
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 99 AENIFVGelprlagvlLDWRKLEEQTDRVLATF------GMQQDM------RPRQLCGtlgpAQRQMIEIMRAIRAGGRL 166
Cdd:TIGR00958 572 RENIAYG---------LTDTPDEEIMAAAKAANahdfimEFPNGYdtevgeKGSQLSG----GQKQRIAIARALVRKPRV 638
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 81855249 167 IAFDEPTSSLtDDEARRLFSVVRRLreKGTSIIYISHRLNeIIDLADRIVVLRDGRLV 224
Cdd:TIGR00958 639 LILDEATSAL-DAECEQLLQESRSR--ASRTVLLIAHRLS-TVERADQILVLKKGSVV 692
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
8-238 |
3.31e-17 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 80.84 E-value: 3.31e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIvfgeprdSH-------R 80
Cdd:COG1137 5 EAENLVKSYGKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDI-------THlpmhkraR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 81 AGIRVIHQEPEIVPNLTVAENIfvgelprLAgVL----LDWRKLEEQTDRVLATFGMqQDMRpRQLCGTLGPAQRQMIEI 156
Cdd:COG1137 78 LGIGYLPQEASIFRKLTVEDNI-------LA-VLelrkLSKKEREERLEELLEEFGI-THLR-KSKAYSLSGGERRRVEI 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 157 MRAIRAGGRLIAFDEPTSS---LTDDEARRLfsvVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVddspAAGAS 233
Cdd:COG1137 148 ARALATNPKFILLDEPFAGvdpIAVADIQKI---IRHLKERGIGVLITDHNVRETLGICDRAYIISEGKVL----AEGTP 220
|
....*
gi 81855249 234 EQTIA 238
Cdd:COG1137 221 EEILN 225
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
19-256 |
3.62e-17 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 81.37 E-value: 3.62e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 19 VQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPR-DSHRagIRVIHQEP--EIVPN 95
Cdd:PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSyRSQR--IRMIFQDPstSLNPR 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 96 LTVAENIfvgELPRLAGVLLDWRKLEEQTDRVLATFGMQQD---MRPRQlcgtLGPAQRQMIEIMRAIRAGGRLIAFDEP 172
Cdd:PRK15112 104 QRISQIL---DFPLRLNTDLEPEQREKQIIETLRQVGLLPDhasYYPHM----LAPGQKQRLGLARALILRPKVIIADEA 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 173 TSSLTDDEARRLFSVVRRLREK-GTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSPAA---GASEQTIAKLMVGRNIDD 248
Cdd:PRK15112 177 LASLDMSMRSQLINLMLELQEKqGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTAdvlASPLHELTKRLIAGHFGE 256
|
....*...
gi 81855249 249 LFTRETWR 256
Cdd:PRK15112 257 ALTADAWR 264
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
12-224 |
3.78e-17 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 82.96 E-value: 3.78e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 12 ISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPrdsHRAGIRVIHQEPE 91
Cdd:PRK11607 25 LTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP---YQRPINMMFQSYA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 92 IVPNLTVAENIFVG----ELPRlagvlldwrklEEQTDRV---LATFGMQQ--DMRPRQLCGtlgpAQRQMIEIMRAIRA 162
Cdd:PRK11607 102 LFPHMTVEQNIAFGlkqdKLPK-----------AEIASRVnemLGLVHMQEfaKRKPHQLSG----GQRQRVALARSLAK 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 81855249 163 GGRLIAFDEPTSSLTDDEARRL-FSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLV 224
Cdd:PRK11607 167 RPKLLLLDEPMGALDKKLRDRMqLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFV 229
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
9-230 |
3.95e-17 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 80.57 E-value: 3.95e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 9 LDGISKRFGVvQALdNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVR-----HGSTPIvfgeprdsHRAGI 83
Cdd:COG3840 4 LDDLTYRYGD-FPL-RFDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILwngqdLTALPP--------AERPV 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 84 RVIHQEPEIVPNLTVAENIFVGELPRLAGVLLDWRKLEEQTDRV-LATFGmqqDMRPRQLCGtlgpAQRQMIEIMRAIRA 162
Cdd:COG3840 74 SMLFQENNLFPHLTVAQNIGLGLRPGLKLTAEQRAQVEQALERVgLAGLL---DRLPGQLSG----GQRQRVALARCLVR 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81855249 163 GGRLIAFDEPTSSLtdDEARR--LFSVVRRL-REKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSPAA 230
Cdd:COG3840 147 KRPILLLDEPFSAL--DPALRqeMLDLVDELcRERGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTA 215
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
21-221 |
4.68e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 81.34 E-value: 4.68e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 21 ALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDShRAGIRVIHQEPeivpnltvaE 100
Cdd:PRK13648 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKL-RKHIGIVFQNP---------D 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 101 NIFVGELPR------LAGVLLDWRKLEEQTDRVLATFGM--QQDMRPRQLCGtlgpAQRQMIEIMRAIRAGGRLIAFDEP 172
Cdd:PRK13648 94 NQFVGSIVKydvafgLENHAVPYDEMHRRVSEALKQVDMleRADYEPNALSG----GQKQRVAIAGVLALNPSVIILDEA 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 81855249 173 TSSLTDDEARRLFSVVRRLR-EKGTSIIYISHRLNEIIDlADRIVVLRDG 221
Cdd:PRK13648 170 TSMLDPDARQNLLDLVRKVKsEHNITIISITHDLSEAME-ADHVIVMNKG 218
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
272-479 |
5.45e-17 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 80.54 E-value: 5.45e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVP--------------VLPNSPH------AAIVA 331
Cdd:COG4559 17 LDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPlaawspwelarrraVLPQHSSlafpftVEEVV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 332 GIGFAPEDRKHEAlllfrsilDNAALcvpdktssfgffnrRKAMEIV--SPLAakmsikapnlDEQVSKLSGGNQQKVVL 409
Cdd:COG4559 97 ALGRAPHGSSAAQ--------DRQIV--------------REALALVglAHLA----------GRSYQTLSGGEQQRVQL 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 410 ARWLA-------RQPMLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILIsseMPEL---IGLADRVLVMAGGRITAE 479
Cdd:COG4559 145 ARVLAqlwepvdGGPRWLFLDEPTSALDLAHQHAVLRLARQLARRGGGVVAV---LHDLnlaAQYADRILLLHQGRLVAQ 221
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
257-484 |
5.64e-17 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 80.80 E-value: 5.64e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 257 SGEQLLDVAGLTTD-----RVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHAaiVA 331
Cdd:PRK11300 1 MSQPLLSVSGLMMRfggllAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQ--IA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 332 GIGFApedRKHEALLLFRS--ILDNaaLCVPD----KTSSF-GFFN----RRKAMEIVSplAAKMSIKAPNLDE----QV 396
Cdd:PRK11300 79 RMGVV---RTFQHVRLFREmtVIEN--LLVAQhqqlKTGLFsGLLKtpafRRAESEALD--RAATWLERVGLLEhanrQA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 397 SKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAAS-GIGIILISSEMPELIGLADRVLVMAGGR 475
Cdd:PRK11300 152 GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEhNVTVLLIEHDMKLVMGISDRIYVVNQGT 231
|
....*....
gi 81855249 476 ITAElARPD 484
Cdd:PRK11300 232 PLAN-GTPE 239
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
272-479 |
5.94e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 80.90 E-value: 5.94e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAK------------AIV-GYD----------RRIAGTIAMNgvpvlpnsPHAA 328
Cdd:PRK13633 26 LDDVNLEVKKGEFLVILGRNGSGKSTIAKhmnallipsegkVYVdGLDtsdeenlwdiRNKAGMVFQN--------PDNQ 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 329 IVAGI-----GFAPEDRKHEALLLfRSILDNAALCVpdktssfGFFNRRKameivsplaakmsiKAPNLdeqvskLSGGN 403
Cdd:PRK13633 98 IVATIveedvAFGPENLGIPPEEI-RERVDESLKKV-------GMYEYRR--------------HAPHL------LSGGQ 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 81855249 404 QQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDEL-AASGIGIILISSEMPELIGlADRVLVMAGGRITAE 479
Cdd:PRK13633 150 KQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELnKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVME 225
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
262-478 |
6.33e-17 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 83.64 E-value: 6.33e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 262 LDVAGLT-----TDR--VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPhAAIVAGIG 334
Cdd:COG4618 331 LSVENLTvvppgSKRpiLRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQWDR-EELGRHIG 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 335 FAPEDrkheaLLLFR-SILDNAALcvpdktssFGFFNRRKAMEivsplAAK------MSIKAPN-----LDEQVSKLSGG 402
Cdd:COG4618 410 YLPQD-----VELFDgTIAENIAR--------FGDADPEKVVA-----AAKlagvheMILRLPDgydtrIGEGGARLSGG 471
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 81855249 403 NQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEmPELIGLADRVLVMAGGRITA 478
Cdd:COG4618 472 QRQRIGLARALYGDPRLVVLDEPNSNLDDEGEAALAAAIRALKARGATVVVITHR-PSLLAAVDKLLVLRDGRVQA 546
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
272-478 |
6.99e-17 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 83.28 E-value: 6.99e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPhAAIVAGIGFAPEDrkheALLLFRSI 351
Cdd:COG4987 351 LDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDLDE-DDLRRRIAVVPQR----PHLFDTTL 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 352 LDNAALCVPDKTSSfgffNRRKAMEIV--SPLAAKMsikaPN-----LDEQVSKLSGGNQQKVVLARWLARQPMLLILDE 424
Cdd:COG4987 426 RENLRLARPDATDE----ELWAALERVglGDWLAAL----PDgldtwLGEGGRRLSGGERRRLALARALLRDAPILLLDE 497
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 81855249 425 PTRGIDIGAKAEIYRLIDELAAsGIGIILISSEmPELIGLADRVLVMAGGRITA 478
Cdd:COG4987 498 PTEGLDAATEQALLADLLEALA-GRTVLLITHR-LAGLERMDRILVLEDGRIVE 549
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
21-228 |
8.78e-17 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 79.07 E-value: 8.78e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 21 ALDNVSIAFRPGEVLALVGENGAGKSTMM----RILEGVSGP------DTGTVrhgstpivfgePRDSHRAGIRVIHQEP 90
Cdd:cd03244 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLlalfRLVELSSGSilidgvDISKI-----------GLHDLRSRISIIPQDP 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 91 EIVPNlTVAENifvgelprlagvlLD----------WRKLEE-QTDRVLATFGMQQDMRpRQLCGT-LGPAQRQMIEIMR 158
Cdd:cd03244 88 VLFSG-TIRSN-------------LDpfgeysdeelWQALERvGLKEFVESLPGGLDTV-VEEGGEnLSVGQRQLLCLAR 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81855249 159 AIRAGGRLIAFDEPTSSLTDDEARRLFSVVRRlREKGTSIIYISHRLNEIIDlADRIVVLRDGRLVD-DSP 228
Cdd:cd03244 153 ALLRKSKILVLDEATASVDPETDALIQKTIRE-AFKDCTVLTIAHRLDTIID-SDRILVLDKGRVVEfDSP 221
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
14-226 |
9.31e-17 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 79.11 E-value: 9.31e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 14 KRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTV-RHG--STPIVFGeprdshrAGIRvihqep 90
Cdd:cd03220 30 GEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVtVRGrvSSLLGLG-------GGFN------ 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 91 eivPNLTVAENI-FVGELPRLAGVLLDWRK--------LEEQTDRVLATF--GMQqdMRprqlcgtLGPAqrqmieIMRA 159
Cdd:cd03220 97 ---PELTGRENIyLNGRLLGLSRKEIDEKIdeiiefseLGDFIDLPVKTYssGMK--AR-------LAFA------IATA 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 81855249 160 IRAGGRLIafDEPTSslTDDEA--RRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDD 226
Cdd:cd03220 159 LEPDILLI--DEVLA--VGDAAfqEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFD 223
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
274-484 |
9.90e-17 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 81.69 E-value: 9.90e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 274 DVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVpVLPNSphaaiVAGIGFAPEDRK-----HEALLL- 347
Cdd:COG4148 17 DVDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGE-VLQDS-----ARGIFLPPHRRRigyvfQEARLFp 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 348 FRSILDNaaLCvpdktssFGFFNRRKAMEIVSP--LAAKMSIkAPNLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEP 425
Cdd:COG4148 91 HLSVRGN--LL-------YGRKRAPRAERRISFdeVVELLGI-GHLLDRRPATLSGGERQRVAIGRALLSSPRLLLMDEP 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 81855249 426 TRGIDIGAKAEI--Y--RLIDELaasGIGIILISSEMPELIGLADRVLVMAGGRITAE------LARPD 484
Cdd:COG4148 161 LAALDLARKAEIlpYleRLRDEL---DIPILYVSHSLDEVARLADHVVLLEQGRVVASgplaevLSRPD 226
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
12-228 |
1.01e-16 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 80.90 E-value: 1.01e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 12 ISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVR-HGSTP------------IVFGE---- 74
Cdd:COG4586 28 FRREYREVEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVRvLGYVPfkrrkefarrigVVFGQrsql 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 75 -----PRDSHRAgIRVIHQepeiVPNLTVAENifvgeLPRLAGVLldwrKLEEQTDrvlatfgmqqdmRP-RQLcgTLGp 148
Cdd:COG4586 108 wwdlpAIDSFRL-LKAIYR----IPDAEYKKR-----LDELVELL----DLGELLD------------TPvRQL--SLG- 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 149 aQRqmieiMRAiraggRLIA----------FDEPTSSLtDDEA-RRLFSVVRRL-REKGTSIIYISHRLNEIIDLADRIV 216
Cdd:COG4586 159 -QR-----MRC-----ELAAallhrpkilfLDEPTIGL-DVVSkEAIREFLKEYnRERGTTILLTSHDMDDIEALCDRVI 226
|
250
....*....|..
gi 81855249 217 VLRDGRLVDDSP 228
Cdd:COG4586 227 VIDHGRIIYDGS 238
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
5-230 |
1.03e-16 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 82.93 E-value: 1.03e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 5 DFFSLDGISKRF-----GVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGT--VRHGSTPIVFGEPRD 77
Cdd:TIGR03269 278 PIIKVRNVSKRYisvdrGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEvnVRVGDEWVDMTKPGP 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 78 SHRAG----IRVIHQEPEIVPNLTVAENI-------FVGELPRLAGVLldwrkleeqtdrVLATFGMQQDMRPR---QLC 143
Cdd:TIGR03269 358 DGRGRakryIGILHQEYDLYPHRTVLDNLteaigleLPDELARMKAVI------------TLKMVGFDEEKAEEildKYP 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 144 GTLGPAQRQMIEIMRAIRAGGRLIAFDEPTSSLtDDEARRLF--SVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDG 221
Cdd:TIGR03269 426 DELSEGERHRVALAQVLIKEPRIVILDEPTGTM-DPITKVDVthSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDG 504
|
....*....
gi 81855249 222 RLVDDSPAA 230
Cdd:TIGR03269 505 KIVKIGDPE 513
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
254-481 |
1.09e-16 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 78.93 E-value: 1.09e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 254 TWRSGEQLLDVaglttdrVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPV--LPNSPHAAIVA 331
Cdd:COG1136 13 SYGTGEGEVTA-------LRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDIssLSERELARLRR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 332 G-IGFAPEDrkHEaLLLFRSILDNAAL-CVPDKTSsfgffnRRKAMEIVSPLAAKMSIKApNLDEQVSKLSGGNQQKVVL 409
Cdd:COG1136 86 RhIGFVFQF--FN-LLPELTALENVALpLLLAGVS------RKERRERARELLERVGLGD-RLDHRPSQLSGGQQQRVAI 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 81855249 410 ARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAA-SGIGIILISSEmPELIGLADRVLVMAGGRITAELA 481
Cdd:COG1136 156 ARALVNRPKLILADEPTGNLDSKTGEEVLELLRELNReLGTTIVMVTHD-PELAARADRVIRLRDGRIVSDER 227
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
260-495 |
1.22e-16 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 81.11 E-value: 1.22e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 260 QLLDVAGLTTD---------RVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGY--DRRI--AGTIAMNGVPVLPNSPH 326
Cdd:COG4170 2 PLLDIRNLTIEidtpqgrvkAVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICGItkDNWHvtADRFRWNGIDLLKLSPR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 327 aaivagigfapEDRK---HEALLLF---RSILDNAA-----LC--VPDKTSSFGFFNRRKA-MEIVSPLAAKMSIKAPN- 391
Cdd:COG4170 82 -----------ERRKiigREIAMIFqepSSCLDPSAkigdqLIeaIPSWTFKGKWWQRFKWrKKRAIELLHRVGIKDHKd 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 392 -LDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAA-SGIGIILISSEMPELIGLADRVL 469
Cdd:COG4170 151 iMNSYPHELTEGECQKVMIAMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLNQlQGTSILLISHDLESISQWADTIT 230
|
250 260
....*....|....*....|....*.
gi 81855249 470 VMAGGRiTAELARPDIdeatILKHAM 495
Cdd:COG4170 231 VLYCGQ-TVESGPTEQ----ILKSPH 251
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
272-479 |
1.41e-16 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 78.39 E-value: 1.41e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGeVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSphAAIVAGIGFAPEDRKHEALLLFRSI 351
Cdd:cd03264 16 LDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP--QKLRRRIGYLPQEFGVYPNFTVREF 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 352 LDNAALC--VPDKtssfgffnRRKAmeivsplAAKMSIKAPNL----DEQVSKLSGGNQQKVVLARWLARQPMLLILDEP 425
Cdd:cd03264 93 LDYIAWLkgIPSK--------EVKA-------RVDEVLELVNLgdraKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEP 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 81855249 426 TRGIDIGAKAEIYRLIDELAASgiGIILISSEMPELI-GLADRVLVMAGGRITAE 479
Cdd:cd03264 158 TAGLDPEERIRFRNLLSELGED--RIVILSTHIVEDVeSLCNQVAVLNKGKLVFE 210
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
261-479 |
1.71e-16 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 79.43 E-value: 1.71e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 261 LLDVAGLTTDR-----VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVP--------------VL 321
Cdd:PRK13548 2 MLEARNLSVRLggrtlLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPladwspaelarrraVL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 322 PNSPHAAI------VAGIGFAP--EDRKHEALLLfrsildnaalcvpdktssfgffnrRKAMEIV--SPLAakmsikapn 391
Cdd:PRK13548 82 PQHSSLSFpftveeVVAMGRAPhgLSRAEDDALV------------------------AAALAQVdlAHLA--------- 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 392 lDEQVSKLSGGNQQKVVLARWLAR------QPMLLILDEPTRGIDIGAKAEIYRLIDELA-ASGIGIILIsseMPELiGL 464
Cdd:PRK13548 129 -GRDYPQLSGGEQQRVQLARVLAQlwepdgPPRWLLLDEPTSALDLAHQHHVLRLARQLAhERGLAVIVV---LHDL-NL 203
|
250
....*....|....*....
gi 81855249 465 A----DRVLVMAGGRITAE 479
Cdd:PRK13548 204 AaryaDRIVLLHQGRLVAD 222
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
272-485 |
2.10e-16 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 78.78 E-value: 2.10e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMN--GVPVLPnsPHAAIVAGIGFAPEdrkhEALLLFR 349
Cdd:PRK10895 19 VEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDdeDISLLP--LHARARRGIGYLPQ----EASIFRR 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 350 -SILDN--AALCVPDKtssfgfFNRRKAMEIVSPLAAKMSIKAPNlDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPT 426
Cdd:PRK10895 93 lSVYDNlmAVLQIRDD------LSAEQREDRANELMEEFHIEHLR-DSMGQSLSGGERRRVEIARALAANPKFILLDEPF 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 81855249 427 RGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRITAELARPDI 485
Cdd:PRK10895 166 AGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEI 224
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
274-476 |
2.42e-16 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 78.30 E-value: 2.42e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 274 DVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPhAAIVAGIGFAPEdrkhEALLLFRSILD 353
Cdd:cd03252 20 NISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADP-AWLRRQVGVVLQ----ENVLFNRSIRD 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 354 NAALCVPDktssfgfFNRRKAMEIVSPLAAKMSI-KAPN-----LDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTR 427
Cdd:cd03252 95 NIALADPG-------MSMERVIEAAKLAGAHDFIsELPEgydtiVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATS 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 81855249 428 GIDIGAKAEIYRLIDELAAsGIGIILISSEMpELIGLADRVLVMAGGRI 476
Cdd:cd03252 168 ALDYESEHAIMRNMHDICA-GRTVIIIAHRL-STVKNADRIIVMEKGRI 214
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
11-225 |
3.02e-16 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 81.29 E-value: 3.02e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 11 GISKR-FGVVQALDNVSIAFRPGEVLALVGENGAGKST----MMRILegvsgPDTGTVRHGSTPIVFGEPRD--SHRAGI 83
Cdd:PRK15134 290 GILKRtVDHNVVVKNISFTLRPGETLGLVGESGSGKSTtglaLLRLI-----NSQGEIWFDGQPLHNLNRRQllPVRHRI 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 84 RVIHQEP--EIVPNLTVAENIfvGELPRLAGVLLDWRKLEEQTDRVLATFGMQQDMR---PRQLCGtlgpAQRQMIEIMR 158
Cdd:PRK15134 365 QVVFQDPnsSLNPRLNVLQII--EEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRhryPAEFSG----GQRQRIAIAR 438
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 81855249 159 AIRAGGRLIAFDEPTSSLTDDEARRLFSVVRRLREK-GTSIIYISHRLNEIIDLADRIVVLRDGRLVD 225
Cdd:PRK15134 439 ALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKhQLAYLFISHDLHVVRALCHQVIVLRQGEVVE 506
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
1-229 |
4.45e-16 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 79.38 E-value: 4.45e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 1 MTQSDFFSLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGT-------VRHGSTpivfg 73
Cdd:PRK11432 1 MTQKNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQifidgedVTHRSI----- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 74 EPRDshragIRVIHQEPEIVPNLTVAENIFVGelPRLAGVlldwrKLEEQTDRV--------LATFGmqqDMRPRQLCGt 145
Cdd:PRK11432 76 QQRD-----ICMVFQSYALFPHMSLGENVGYG--LKMLGV-----PKEERKQRVkealelvdLAGFE---DRYVDQISG- 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 146 lgpAQRQMIEIMRAIRAGGRLIAFDEPTSSLTDDEARRLFSVVRRLREK-GTSIIYISHRLNEIIDLADRIVVLRDGRLV 224
Cdd:PRK11432 140 ---GQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQfNITSLYVTHDQSEAFAVSDTVIVMNKGKIM 216
|
....*
gi 81855249 225 DDSPA 229
Cdd:PRK11432 217 QIGSP 221
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
21-228 |
5.14e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 78.30 E-value: 5.14e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 21 ALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTvrhGSTPIVFG---------EPRDshRAGIrvIHQEP- 90
Cdd:PRK13640 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNP---NSKITVDGitltaktvwDIRE--KVGI--VFQNPd 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 91 -EIVpNLTVAENIFVG----ELPRlagvlldwRKLEEQTDRVLATFGMQ--QDMRPRQLCGtlgpAQRQMIEIMRAIRAG 163
Cdd:PRK13640 95 nQFV-GATVGDDVAFGlenrAVPR--------PEMIKIVRDVLADVGMLdyIDSEPANLSG----GQKQRVAIAGILAVE 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 81855249 164 GRLIAFDEPTSSLTDDEARRLFSVVRRL-REKGTSIIYISHRLNEiIDLADRIVVLRDGRLVD-DSP 228
Cdd:PRK13640 162 PKIIILDESTSMLDPAGKEQILKLIRKLkKKNNLTVISITHDIDE-ANMADQVLVLDDGKLLAqGSP 227
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
268-477 |
5.78e-16 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 77.44 E-value: 5.78e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 268 TTDRVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVlpNSPHAAIvagigfapEDRKHEALLL 347
Cdd:PRK09493 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKV--NDPKVDE--------RLIRQEAGMV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 348 FR--------SILDNAALCvPDKTSSFGffnRRKAMEIVSPLAAKMSIkAPNLDEQVSKLSGGNQQKVVLARWLARQPML 419
Cdd:PRK09493 83 FQqfylfphlTALENVMFG-PLRVRGAS---KEEAEKQARELLAKVGL-AERAHHYPSELSGGQQQRVAIARALAVKPKL 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 81855249 420 LILDEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRIT 477
Cdd:PRK09493 158 MLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIA 215
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
269-476 |
6.45e-16 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 78.97 E-value: 6.45e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 269 TDRVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVlpNSPHAaivagigfapEDRK------H 342
Cdd:PRK10851 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDV--SRLHA----------RDRKvgfvfqH 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 343 EALLLFRSILDNAAlcvpdktssFGF--FNRRKameivSPLAAKMSIKAPNLDEQV----------SKLSGGNQQKVVLA 410
Cdd:PRK10851 83 YALFRHMTVFDNIA---------FGLtvLPRRE-----RPNAAAIKAKVTQLLEMVqlahladrypAQLSGGQKQRVALA 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 411 RWLARQPMLLILDEPTRGIDIGAKAEIYR----LIDELAASGigiILISSEMPELIGLADRVLVMAGGRI 476
Cdd:PRK10851 149 RALAVEPQILLLDEPFGALDAQVRKELRRwlrqLHEELKFTS---VFVTHDQEEAMEVADRVVVMSQGNI 215
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
7-225 |
8.94e-16 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 79.72 E-value: 8.94e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 7 FSLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIV--FgeprDSHRAGIR 84
Cdd:COG0488 316 LELEGLSKSYGDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKLGETVKIgyF----DQHQEELD 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 85 vihqepeivPNLTVAENIfvgelprlagvlldWRKLEEQTDR----VLATFGMQQDmRPRQLCGTL--GPAQRQMieIMR 158
Cdd:COG0488 392 ---------PDKTVLDEL--------------RDGAPGGTEQevrgYLGRFLFSGD-DAFKPVGVLsgGEKARLA--LAK 445
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 159 AIRAGGRLIAFDEPTSSLtDDEARRLfsVVRRLRE-KGTsIIYISH-RlnEIID-LADRIVVLRDGRLVD 225
Cdd:COG0488 446 LLLSPPNVLLLDEPTNHL-DIETLEA--LEEALDDfPGT-VLLVSHdR--YFLDrVATRILEFEDGGVRE 509
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
8-263 |
9.99e-16 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 77.05 E-value: 9.99e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFGV-----VQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVF-GEPRDSHRA 81
Cdd:COG1101 3 ELKNLSKTFNPgtvneKRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTKlPEYKRAKYI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 82 GiRViHQEPEI--VPNLTVAENIFV----GELPRLAgvlldWRKLEEQTDRV---LATFGMQQDMRPRQLCGTLGPAQRQ 152
Cdd:COG1101 83 G-RV-FQDPMMgtAPSMTIEENLALayrrGKRRGLR-----RGLTKKRRELFrelLATLGLGLENRLDTKVGLLSGGQRQ 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 153 MIEIMRAIRAGGRLIAFDEPTSSLTDDEARRLFSVVRRL-REKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSPAAG 231
Cdd:COG1101 156 ALSLLMATLTKPKLLLLDEHTAALDPKTAALVLELTEKIvEENNLTTLMVTHNMEQALDYGNRLIMMHEGRIILDVSGEE 235
|
250 260 270
....*....|....*....|....*....|..
gi 81855249 232 ASEQTIAKLMvgrnidDLFTREtwrSGEQLLD 263
Cdd:COG1101 236 KKKLTVEDLL------ELFEEI---RGEELAD 258
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
22-223 |
1.38e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 77.08 E-value: 1.38e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 22 LDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVrhgstpIVFGEPRDSH-----RAGIRVIHQEPeivpnl 96
Cdd:PRK13650 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI------IIDGDLLTEEnvwdiRHKIGMVFQNP------ 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 97 tvaENIFVGELPR------LAGVLLDWRKLEEQTDRVLATFGMQ--QDMRPRQLCGtlgpAQRQMIEIMRAIRAGGRLIA 168
Cdd:PRK13650 91 ---DNQFVGATVEddvafgLENKGIPHEEMKERVNEALELVGMQdfKEREPARLSG----GQKQRVAIAGAVAMRPKIII 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 81855249 169 FDEPTSSLtDDEARR-LFSVVRRLREK-GTSIIYISHRLNEIIdLADRIVVLRDGRL 223
Cdd:PRK13650 164 LDEATSML-DPEGRLeLIKTIKGIRDDyQMTVISITHDLDEVA-LSDRVLVMKNGQV 218
|
|
| type_I_sec_HlyB |
TIGR01846 |
type I secretion system ABC transporter, HlyB family; Type I protein secretion is a system in ... |
22-225 |
1.71e-15 |
|
type I secretion system ABC transporter, HlyB family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273831 [Multi-domain] Cd Length: 694 Bit Score: 79.40 E-value: 1.71e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 22 LDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPrDSHRAGIRVIHQEpEIVPNLTVAEN 101
Cdd:TIGR01846 473 LSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADP-AWLRRQMGVVLQE-NVLFSRSIRDN 550
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 102 IFVGE----------LPRLAGVLLDWRKLEEQTDRVLATFGmqqdmrprqlcGTLGPAQRQMIEIMRAIRAGGRLIAFDE 171
Cdd:TIGR01846 551 IALCNpgapfehvihAAKLAGAHDFISELPQGYNTEVGEKG-----------ANLSGGQRQRIAIARALVGNPRILIFDE 619
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 81855249 172 PTSSLtDDEARRLfsVVRRLRE--KGTSIIYISHRLNEIIDlADRIVVLRDGRLVD 225
Cdd:TIGR01846 620 ATSAL-DYESEAL--IMRNMREicRGRTVIIIAHRLSTVRA-CDRIIVLEKGQIAE 671
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
272-476 |
1.85e-15 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 75.37 E-value: 1.85e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPV--LPnsphaaivagigfaPEDR------KHE 343
Cdd:cd03301 16 LDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVtdLP--------------PKDRdiamvfQNY 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 344 ALLLFRSILDNAALcvPDKTSSFGffnRRKAMEIVSPLAAKMSIKApNLDEQVSKLSGGNQQKVVLARWLARQPMLLILD 423
Cdd:cd03301 82 ALYPHMTVYDNIAF--GLKLRKVP---KDEIDERVREVAELLQIEH-LLDRKPKQLSGGQRQRVALGRAIVREPKVFLMD 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 81855249 424 EPTRGID----IGAKAEIYRLIDELaasGIGIILISSEMPELIGLADRVLVMAGGRI 476
Cdd:cd03301 156 EPLSNLDaklrVQMRAELKRLQQRL---GTTTIYVTHDQVEAMTMADRIAVMNDGQI 209
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
12-230 |
2.07e-15 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 76.16 E-value: 2.07e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 12 ISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDSH------------ 79
Cdd:PRK10619 11 LHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQlkvadknqlrll 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 80 RAGIRVIHQEPEIVPNLTVAENIFVGELPRLAgvlLDWRKLEEQTDRVLATFGM---QQDMRPRQLCGtlgpAQRQMIEI 156
Cdd:PRK10619 91 RTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG---LSKQEARERAVKYLAKVGIderAQGKYPVHLSG----GQQQRVSI 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 81855249 157 MRAIRAGGRLIAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSPAA 230
Cdd:PRK10619 164 ARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPE 237
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
259-479 |
2.50e-15 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 76.21 E-value: 2.50e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 259 EQLLDVAGLT-----TDR--VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHAaIVA 331
Cdd:PRK13635 3 EEIIRVEHISfrypdAATyaLKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWD-VRR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 332 GIGfapedrkhealLLFRSIlDN--AALCVPDKTSsFGFFNR---RKAMEIVSPLAAKMSIKAPNLDEQVSKLSGGNQQK 406
Cdd:PRK13635 82 QVG-----------MVFQNP-DNqfVGATVQDDVA-FGLENIgvpREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQR 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 81855249 407 VVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDEL-AASGIGIILISSEMPElIGLADRVLVMAGGRITAE 479
Cdd:PRK13635 149 VAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLkEQKGITVLSITHDLDE-AAQADRVIVMNKGEILEE 221
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
272-474 |
2.63e-15 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 75.19 E-value: 2.63e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHAAIVAgigfapedrKHEALLLFRSI 351
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF---------QNYSLLPWLTV 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 352 LDNAALCVpdkTSSFGFFNRRKAMEIVSPLAAKMSIKAPNlDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDI 431
Cdd:TIGR01184 72 RENIALAV---DRVLPDLSKSERRAIVEEHIALVGLTEAA-DKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDA 147
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 81855249 432 GAKAEIY-RLIDELAASGIGIILISSEMPELIGLADRVLVMAGG 474
Cdd:TIGR01184 148 LTRGNLQeELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
8-223 |
3.15e-15 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 76.99 E-value: 3.15e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDShraGIRVIH 87
Cdd:PRK11000 5 TLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAER---GVGMVF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 88 QEPEIVPNLTVAENIFVGElpRLAGVlldwrKLEEQTDRVLATFGMQQ-----DMRPRQLCGtlgpAQRQMIEIMRAIRA 162
Cdd:PRK11000 82 QSYALYPHLSVAENMSFGL--KLAGA-----KKEEINQRVNQVAEVLQlahllDRKPKALSG----GQRQRVAIGRTLVA 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 81855249 163 GGRLIAFDEPTSSLtdDEARR--LFSVVRRLREK-GTSIIYISHRLNEIIDLADRIVVLRDGRL 223
Cdd:PRK11000 151 EPSVFLLDEPLSNL--DAALRvqMRIEISRLHKRlGRTMIYVTHDQVEAMTLADKIVVLDAGRV 212
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
21-224 |
3.16e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 75.89 E-value: 3.16e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 21 ALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVrhgstpIV--FGEPRDSHRAGIR----VIHQEP--EI 92
Cdd:PRK13633 25 ALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKV------YVdgLDTSDEENLWDIRnkagMVFQNPdnQI 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 93 VPNLtVAENIFVGelPRLAGVLLDwrKLEEQTDRVLATFGMQQDMR--PRQLCGtlGPAQRQMIEIMRAIRAggRLIAFD 170
Cdd:PRK13633 99 VATI-VEEDVAFG--PENLGIPPE--EIRERVDESLKKVGMYEYRRhaPHLLSG--GQKQRVAIAGILAMRP--ECIIFD 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 81855249 171 EPTSSLTDDEARRLFSVVRRLREK-GTSIIYISHRLNEIIDlADRIVVLRDGRLV 224
Cdd:PRK13633 170 EPTAMLDPSGRREVVNTIKELNKKyGITIILITHYMEEAVE-ADRIIVMDSGKVV 223
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
22-224 |
3.59e-15 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 75.10 E-value: 3.59e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 22 LDNVSIAFRPGEVLALVGENGAGKSTMMRILegvSGPDTGTVRHGStpIVF-GE------PRDSHRAGIRVIHQEPEIVP 94
Cdd:COG0396 16 LKGVNLTIKPGEVHAIMGPNGSGKSTLAKVL---MGHPKYEVTSGS--ILLdGEdilelsPDERARAGIFLAFQYPVEIP 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 95 NLTVAE--NIFVGELPRLAGVLLDWRK-LEEQTDRVlatfGMQQDMRPRQLCGTLGPAQRQMIEI--MRAIRAggRLIAF 169
Cdd:COG0396 91 GVSVSNflRTALNARRGEELSAREFLKlLKEKMKEL----GLDEDFLDRYVNEGFSGGEKKRNEIlqMLLLEP--KLAIL 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 81855249 170 DEPTSSLTDDEARRLFSVVRRLREKGTSIIYISH--RLNEIIDlADRIVVLRDGRLV 224
Cdd:COG0396 165 DETDSGLDIDALRIVAEGVNKLRSPDRGILIITHyqRILDYIK-PDFVHVLVDGRIV 220
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
21-223 |
3.66e-15 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 78.90 E-value: 3.66e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 21 ALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIvfGEPRDSHRAGIRVIHQEPEIVPNLTVAE 100
Cdd:TIGR01257 945 AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI--ETNLDAVRQSLGMCPQHNILFHHLTVAE 1022
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 101 NIFVgeLPRLAGvlLDWRKLEEQTDRVLATFGM--QQDMRPRQLCGTLgpaQRQMiEIMRAIRAGGRLIAFDEPTSSLTD 178
Cdd:TIGR01257 1023 HILF--YAQLKG--RSWEEAQLEMEAMLEDTGLhhKRNEEAQDLSGGM---QRKL-SVAIAFVGDAKVVVLDEPTSGVDP 1094
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 81855249 179 DEARRLFSVVRRLREkGTSIIYISHRLNEIIDLADRIVVLRDGRL 223
Cdd:TIGR01257 1095 YSRRSIWDLLLKYRS-GRTIIMSTHHMDEADLLGDRIAIISQGRL 1138
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
20-234 |
3.73e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 75.54 E-value: 3.73e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 20 QALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRhgstpiVFGepRDSHRAGIR-------VIHQEPE- 91
Cdd:PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK------VMG--REVNAENEKwvrskvgLVFQDPDd 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 92 IVPNLTVAENIFVGelPRLAGvlLDWRKLEEQTDRVLATFGMQ--QDMRPRQLcgTLGPAQRQMIEIMRAIRAggRLIAF 169
Cdd:PRK13647 91 QVFSSTVWDDVAFG--PVNMG--LDKDEVERRVEEALKAVRMWdfRDKPPYHL--SYGQKKRVAIAGVLAMDP--DVIVL 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 81855249 170 DEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVddspAAGASE 234
Cdd:PRK13647 163 DEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVL----AEGDKS 223
|
|
| thiQ |
TIGR01277 |
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ... |
32-223 |
3.86e-15 |
|
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. [Transport and binding proteins, Other]
Pssm-ID: 130344 [Multi-domain] Cd Length: 213 Bit Score: 74.51 E-value: 3.86e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 32 GEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPrdsHRAGIRVIHQEPEIVPNLTVAENIFVGELPRLA 111
Cdd:TIGR01277 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAP---YQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLK 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 112 GVLLDWRKLEEQTDRVlaTFGMQQDMRPRQLCGtlgpAQRQMIEIMRAIRAGGRLIAFDEPTSSLTDDEARRLFSVVRRL 191
Cdd:TIGR01277 101 LNAEQQEKVVDAAQQV--GIADYLDRLPEQLSG----GQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQL 174
|
170 180 190
....*....|....*....|....*....|...
gi 81855249 192 -REKGTSIIYISHRLNEIIDLADRIVVLRDGRL 223
Cdd:TIGR01277 175 cSERQRTLLMVTHHLSDARAIASQIAVVSQGKI 207
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
262-478 |
4.31e-15 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 77.19 E-value: 4.31e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 262 LDVAGLTTDR-----VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVlpnspHAAIVAGIGFA 336
Cdd:PRK09536 4 IDVSDLSVEFgdttvLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDV-----EALSARAASRR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 337 PEDRKHEALLLFRsiLDNAALCVPDKTSSFGFFNR---------RKAMEIVSplaakmsiKAPNLDEQVSKLSGGNQQKV 407
Cdd:PRK09536 79 VASVPQDTSLSFE--FDVRQVVEMGRTPHRSRFDTwtetdraavERAMERTG--------VAQFADRPVTSLSGGERQRV 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81855249 408 VLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRITA 478
Cdd:PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRA 219
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
22-244 |
4.53e-15 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 77.35 E-value: 4.53e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 22 LDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDSHRAGIRVIHQEPE---IVPNLTV 98
Cdd:PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKrdgLVLGMSV 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 99 AENIFVGELPRLAGVLLDWRKLEEQT--DRVLATFGMQQDMRpRQLCGTLGPAQRQMIEIMRAIRAGGRLIAFDEPTSSL 176
Cdd:PRK10762 348 KENMSLTALRYFSRAGGSLKHADEQQavSDFIRLFNIKTPSM-EQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGV 426
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 81855249 177 TDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSPAAGASEQTIAKLMVGR 244
Cdd:PRK10762 427 DVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQATQEKLMAAAVGK 494
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
12-225 |
4.57e-15 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 74.81 E-value: 4.57e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 12 ISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILE--GVSGPD---TGTVRHGSTPIVfgEPRDSH---RAGI 83
Cdd:PRK14239 11 LSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINrmNDLNPEvtiTGSIVYNGHNIY--SPRTDTvdlRKEI 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 84 RVIHQEPEIVPnLTVAENIFVGelPRLAGVlLDWRKLEEQTDRVLATFGMQQDMRPRQLCGTLGPA--QRQMIEIMRAIR 161
Cdd:PRK14239 89 GMVFQQPNPFP-MSIYENVVYG--LRLKGI-KDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSggQQQRVCIARVLA 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 81855249 162 AGGRLIAFDEPTSSLTDDEARRLFSVVRRLREKGTsIIYISHRLNEIIDLADRIVVLRDGRLVD 225
Cdd:PRK14239 165 TSPKIILLDEPTSALDPISAGKIEETLLGLKDDYT-MLLVTRSMQQASRISDRTGFFLDGDLIE 227
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
272-477 |
4.69e-15 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 74.32 E-value: 4.69e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPV--LPNSPHAAIVAGIGFAPEDRKhealLLF- 348
Cdd:COG2884 18 LSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLsrLKRREIPYLRRRIGVVFQDFR----LLPd 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 349 RSILDNAALC-----VPDKTSsfgffnRRKAMEI---VSpLAAKMsikapnlDEQVSKLSGGNQQKVVLARWLARQPMLL 420
Cdd:COG2884 94 RTVYENVALPlrvtgKSRKEI------RRRVREVldlVG-LSDKA-------KALPHELSGGEQQRVAIARALVNRPELL 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 81855249 421 ILDEPTRGIDIGAKAEIYRLIDELAASGIGIIlISSEMPELI-GLADRVLVMAGGRIT 477
Cdd:COG2884 160 LADEPTGNLDPETSWEIMELLEEINRRGTTVL-IATHDLELVdRMPKRVLELEDGRLV 216
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
261-484 |
4.85e-15 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 75.99 E-value: 4.85e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 261 LLDVAGLTTD---------RVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDR---RI-AGTIAMNGVPVLPNSPha 327
Cdd:PRK15093 3 LLDIRNLTIEfktsdgwvkAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKdnwRVtADRMRFDDIDLLRLSP-- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 328 aivagigfaPEDRK---HEALLLFR---SILDNAA-------LCVPDKTSSFGFFNR-----RKAMEivspLAAKMSIKA 389
Cdd:PRK15093 81 ---------RERRKlvgHNVSMIFQepqSCLDPSErvgrqlmQNIPGWTYKGRWWQRfgwrkRRAIE----LLHRVGIKD 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 390 PNlDEQVS---KLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDEL-AASGIGIILISSEMPELIGLA 465
Cdd:PRK15093 148 HK-DAMRSfpyELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLnQNNNTTILLISHDLQMLSQWA 226
|
250
....*....|....*....
gi 81855249 466 DRVLVMAGGRiTAELARPD 484
Cdd:PRK15093 227 DKINVLYCGQ-TVETAPSK 244
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
272-471 |
5.03e-15 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 73.42 E-value: 5.03e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMngvpvlpnSPHAAIvagigfapedrkheALLLFRSI 351
Cdd:NF040873 8 LHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVRR--------AGGARV--------------AYVPQRSE 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 352 LDNAALCVPDKTSSFGFFNRR--------KAMEIVSplAAKMSIKAPNLDE-QVSKLSGGNQQKVVLARWLARQPMLLIL 422
Cdd:NF040873 66 VPDSLPLTVRDLVAMGRWARRglwrrltrDDRAAVD--DALERVGLADLAGrQLGELSGGQRQRALLAQGLAQEADLLLL 143
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 81855249 423 DEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEmPELIGLADRVLVM 471
Cdd:NF040873 144 DEPTTGLDAESRERIIALLAEEHARGATVVVVTHD-LELVRRADPCVLL 191
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
274-478 |
5.34e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 75.54 E-value: 5.34e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 274 DVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHAAIV-----AGIGFA-PEDRKHEalll 347
Cdd:PRK13643 24 DIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKpvrkkVGVVFQfPESQLFE---- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 348 fRSILDNAALcvpdKTSSFGFfNRRKAMEIVSPLAAKMSIKAPNLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTR 427
Cdd:PRK13643 100 -ETVLKDVAF----GPQNFGI-PKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTA 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 81855249 428 GIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRITA 478
Cdd:PRK13643 174 GLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIIS 224
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
275-480 |
5.72e-15 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 74.14 E-value: 5.72e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 275 VSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNG--VPVLPNSPHAAIVAGIGFAPEDRKheaLLLFRSIL 352
Cdd:PRK10908 21 VTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGhdITRLKNREVPFLRRQIGMIFQDHH---LLMDRTVY 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 353 DNAALCVPDKTSSFGFFNRRkameiVSPLAAKMSI--KAPNLDEQvskLSGGNQQKVVLARWLARQPMLLILDEPTRGID 430
Cdd:PRK10908 98 DNVAIPLIIAGASGDDIRRR-----VSAALDKVGLldKAKNFPIQ---LSGGEQQRVGIARAVVNKPAVLLADEPTGNLD 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 81855249 431 IGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRITAEL 480
Cdd:PRK10908 170 DALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHGGV 219
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
260-494 |
6.17e-15 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 74.74 E-value: 6.17e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 260 QLLDVAGLT--TDR--VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGY----DRRIAGTIAMNGVPVLPNSPHAAIVA 331
Cdd:PRK10418 3 QQIELRNIAlqAAQplVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGIlpagVRQTAGRVLLDGKPVAPCALRGRKIA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 332 GIGFAPED--------RKH--EALLLFRSILDNAALcvpdktssfgffnrRKAMEIVSpLAAKMSIkapnLDEQVSKLSG 401
Cdd:PRK10418 83 TIMQNPRSafnplhtmHTHarETCLALGKPADDATL--------------TAALEAVG-LENAARV----LKLYPFEMSG 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 402 GNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAAS-GIGIILISSEMPELIGLADRVLVMAGGRI---- 476
Cdd:PRK10418 144 GMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKrALGMLLVTHDMGVVARLADDVAVMSHGRIveqg 223
|
250 260
....*....|....*....|
gi 81855249 477 -TAEL-ARPDIDEATILKHA 494
Cdd:PRK10418 224 dVETLfNAPKHAVTRSLVSA 243
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
9-222 |
6.40e-15 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 74.01 E-value: 6.40e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 9 LDGISKRF------GV-VQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGT--VRHGSTPIvfgeprDSH 79
Cdd:COG4778 7 VENLSKTFtlhlqgGKrLPVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSilVRHDGGWV------DLA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 80 RAGIRVIHQ--EPEI------------VPNLTVaenifVGELPRLAGVllDWRKLEEQTDRVLATFGMqqdmrPRQLCGt 145
Cdd:COG4778 81 QASPREILAlrRRTIgyvsqflrviprVSALDV-----VAEPLLERGV--DREEARARARELLARLNL-----PERLWD- 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 146 LGPA-----QRQMIEIMRAIRAGGRLIAFDEPTSSLtDDEARRLfsVVRRLREK---GTSIIYISHRLnEIID-LADRIV 216
Cdd:COG4778 148 LPPAtfsggEQQRVNIARGFIADPPLLLLDEPTASL-DAANRAV--VVELIEEAkarGTAIIGIFHDE-EVREaVADRVV 223
|
....*.
gi 81855249 217 VLRDGR 222
Cdd:COG4778 224 DVTPFS 229
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
272-479 |
8.51e-15 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 73.76 E-value: 8.51e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHAAIVAGIGFAPEDRKheallLFrsi 351
Cdd:PRK11614 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRR-----VF--- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 352 ldnAALCVPDKTSSFGFFNRRKAMEivsPLAAKMSIKAPNLDEQVSK----LSGGNQQKVVLARWLARQPMLLILDEPTR 427
Cdd:PRK11614 93 ---SRMTVEENLAMGGFFAERDQFQ---ERIKWVYELFPRLHERRIQragtMSGGEQQMLAIGRALMSQPRLLLLDEPSL 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 81855249 428 GIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRITAE 479
Cdd:PRK11614 167 GLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLE 218
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
17-239 |
8.52e-15 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 75.33 E-value: 8.52e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 17 GVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSgPDTGTV-----RHGSTPIVFGEPRDSHR---AGIRVIHQ 88
Cdd:COG4170 18 GRVKAVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICGIT-KDNWHVtadrfRWNGIDLLKLSPRERRKiigREIAMIFQ 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 89 EPE--IVPNLTV----AENIFVGELPRLAGVLLDWRKleEQTDRVLATFGMQQD---MR--PRQLcgTLGPAQRQMIEIm 157
Cdd:COG4170 97 EPSscLDPSAKIgdqlIEAIPSWTFKGKWWQRFKWRK--KRAIELLHRVGIKDHkdiMNsyPHEL--TEGECQKVMIAM- 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 158 rAIRAGGRLIAFDEPTSSL---TDDEARRLFSVVRRLRekGTSIIYISHRLNEIIDLADRIVVLRDGRLVDdspaAGASE 234
Cdd:COG4170 172 -AIANQPRLLIADEPTNAMestTQAQIFRLLARLNQLQ--GTSILLISHDLESISQWADTITVLYCGQTVE----SGPTE 244
|
....*
gi 81855249 235 QTIAK 239
Cdd:COG4170 245 QILKS 249
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
10-244 |
8.91e-15 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 73.77 E-value: 8.91e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 10 DGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDSHRAGIRVIHQE 89
Cdd:PRK10895 7 KNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 90 PEIVPNLTVAENifvgelprLAGVL-----LDWRKLEEQTDRVLATFGMQQdMRpRQLCGTLGPAQRQMIEIMRAIRAGG 164
Cdd:PRK10895 87 ASIFRRLSVYDN--------LMAVLqirddLSAEQREDRANELMEEFHIEH-LR-DSMGQSLSGGERRRVEIARALAANP 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 165 RLIAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVddspAAGASEQTIAKLMVGR 244
Cdd:PRK10895 157 KFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLI----AHGTPTEILQDEHVKR 232
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
22-224 |
9.51e-15 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 72.94 E-value: 9.51e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 22 LDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSG--PDTGTVRHGSTPIVFGEPRDSHRAGIRVIHQEPEIVPNLTVA 99
Cdd:cd03217 16 LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKyeVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 100 E---NIFVGelprLAGvlldwrkleeqtdrvlatfgmqqdmrprqlcgtlgpAQRQMIEIMRAIRAGGRLIAFDEPTSSL 176
Cdd:cd03217 96 DflrYVNEG----FSG------------------------------------GEKKRNEILQLLLLEPDLAILDEPDSGL 135
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 81855249 177 TDDEARRLFSVVRRLREKGTSIIYISHRlNEIIDL--ADRIVVLRDGRLV 224
Cdd:cd03217 136 DIDALRLVAEVINKLREEGKSVLIITHY-QRLLDYikPDRVHVLYDGRIV 184
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
272-507 |
1.04e-14 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 74.48 E-value: 1.04e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHAAIvagigfapEDRKHEALLLFR-- 349
Cdd:PRK13641 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNL--------KKLRKKVSLVFQfp 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 350 --SILDNAALcvpdKTSSFG---F-FNRRKAMEivsplAAKMSIKAPNLDEQVS-----KLSGGNQQKVVLARWLARQPM 418
Cdd:PRK13641 95 eaQLFENTVL----KDVEFGpknFgFSEDEAKE-----KALKWLKKVGLSEDLIskspfELSGGQMRRVAIAGVMAYEPE 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 419 LLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRitaelarpdideatILKHAMPQS 498
Cdd:PRK13641 166 ILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGK--------------LIKHASPKE 231
|
....*....
gi 81855249 499 ASSPGDYIQ 507
Cdd:PRK13641 232 IFSDKEWLK 240
|
|
| anch_rpt_ABC |
TIGR03771 |
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ... |
31-227 |
1.31e-14 |
|
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 163483 [Multi-domain] Cd Length: 223 Bit Score: 72.96 E-value: 1.31e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 31 PGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRhgstpiVFGEPRDSHRAGIRVIHQEPEIVPN--LTVAENIFVGElP 108
Cdd:TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVK------VAGASPGKGWRHIGYVPQRHEFAWDfpISVAHTVMSGR-T 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 109 RLAGVL-----LDWRKLEEQTDRVlatfGMQQdMRPRQLcGTLGPAQRQMIEIMRAIRAGGRLIAFDEPTSSLTDDEARR 183
Cdd:TIGR03771 78 GHIGWLrrpcvADFAAVRDALRRV----GLTE-LADRPV-GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 81855249 184 LFSVVRRLREKGTSIIYISHRLNEIIDLADRiVVLRDGRLVDDS 227
Cdd:TIGR03771 152 LTELFIELAGAGTAILMTTHDLAQAMATCDR-VVLLNGRVIADG 194
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
384-476 |
1.47e-14 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 74.50 E-value: 1.47e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 384 KMSIKAPNLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIG 463
Cdd:PRK13631 162 KMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLE 241
|
90
....*....|...
gi 81855249 464 LADRVLVMAGGRI 476
Cdd:PRK13631 242 VADEVIVMDKGKI 254
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
269-490 |
1.55e-14 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 72.99 E-value: 1.55e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 269 TDRVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHA--AIVAGIGFApedRKHEALL 346
Cdd:cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKAlrQLRRQIGMI---FQQFNLI 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 347 LFRSILDNAAL-CVPDKTSSFGFFNRRKAMEIVSPLAAkmsIKAPNLDEQ----VSKLSGGNQQKVVLARWLARQPMLLI 421
Cdd:cd03256 91 ERLSVLENVLSgRLGRRSTWRSLFGLFPKEEKQRALAA---LERVGLLDKayqrADQLSGGQQQRVAIARALMQQPKLIL 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81855249 422 LDEPTRGIDIGAKAEIYRLIDELAAS-GIgIILISSEMPELI-GLADRVLVMAGGRITAELARPDIDEATI 490
Cdd:cd03256 168 ADEPVASLDPASSRQVMDLLKRINREeGI-TVIVSLHQVDLArEYADRIVGLKDGRIVFDGPPAELTDEVL 237
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
20-283 |
1.95e-14 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 73.71 E-value: 1.95e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 20 QALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVR---HGSTPIVFGEPRDSHRAGIRVIHQEPE--IVP 94
Cdd:PRK13641 21 KGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITiagYHITPETGNKNLKKLRKKVSLVFQFPEaqLFE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 95 NlTVAENIFVGelPRLAGVLLDwrKLEEQTDRVLATFGMQQDM---RPRQLCGtlGPAQRQMIEIMRAIRAggRLIAFDE 171
Cdd:PRK13641 101 N-TVLKDVEFG--PKNFGFSED--EAKEKALKWLKKVGLSEDLiskSPFELSG--GQMRRVAIAGVMAYEP--EILCLDE 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 172 PTSSLtDDEARR-LFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVD-DSPAAGASEQT-IAKLMVGRNIDD 248
Cdd:PRK13641 172 PAAGL-DPEGRKeMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKhASPKEIFSDKEwLKKHYLDEPATS 250
|
250 260 270
....*....|....*....|....*....|....*.
gi 81855249 249 LFTRETWRSGEQLLDVAgLTTDR-VNDVSLRVRRGE 283
Cdd:PRK13641 251 RFASKLEKGGFKFSEMP-LTIDElVDGIKNNLKGGF 285
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
272-479 |
2.04e-14 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 73.18 E-value: 2.04e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPV--LPNSPHAAIvagigfapedrKHEALLLFR 349
Cdd:PRK10419 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLakLNRAQRKAF-----------RRDIQMVFQ 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 350 SildnaalcvpdktsSFGFFNRRKAM-EIVS-PL-----------AAKMS--IKAPNLDEQVS-----KLSGGNQQKVVL 409
Cdd:PRK10419 97 D--------------SISAVNPRKTVrEIIRePLrhllsldkaerLARASemLRAVDLDDSVLdkrppQLSGGQLQRVCL 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81855249 410 ARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDEL-AASGIGIILISSEMPELIGLADRVLVMAGGRITAE 479
Cdd:PRK10419 163 ARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLqQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVET 233
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
272-479 |
2.31e-14 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 72.75 E-value: 2.31e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHAAIVAGIGFAPEdrkhEALLlFR-- 349
Cdd:COG1137 19 VKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHLPMHKRARLGIGYLPQ----EASI-FRkl 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 350 SILDN--AALcvpdktsSFGFFNRRKAMEIVSPLAAKMSIkAPNLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTR 427
Cdd:COG1137 94 TVEDNilAVL-------ELRKLSKKEREERLEELLEEFGI-THLRKSKAYSLSGGERRRVEIARALATNPKFILLDEPFA 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 81855249 428 GIDIGAKAEIYRLIDELAASGIGiILIS----SEMpelIGLADRVLVMAGGRITAE 479
Cdd:COG1137 166 GVDPIAVADIQKIIRHLKERGIG-VLITdhnvRET---LGICDRAYIISEGKVLAE 217
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
272-469 |
2.55e-14 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 72.84 E-value: 2.55e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVpvlpnsphaaivAGIGFAPEDRKHEALLlfrsi 351
Cdd:PRK09544 20 LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK------------LRIGYVPQKLYLDTTL----- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 352 ldnaalcvPDKTSSFgfFNRRKAMEIVSPLAAKMSIKAPNLDEQ-VSKLSGGNQQKVVLARWLARQPMLLILDEPTRGID 430
Cdd:PRK09544 83 --------PLTVNRF--LRLRPGTKKEDILPALKRVQAGHLIDApMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 81855249 431 IGAKAEIYRLIDELAAS-GIGIILISSEMPELIGLADRVL 469
Cdd:PRK09544 153 VNGQVALYDLIDQLRRElDCAVLMVSHDLHLVMAKTDEVL 192
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
273-476 |
2.76e-14 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 72.33 E-value: 2.76e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 273 NDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPH-AAIVAGIG-----FApedrkheall 346
Cdd:COG1126 18 KGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLTDSKKDiNKLRRKVGmvfqqFN---------- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 347 LF--RSILDNA--ALCVPDKTSsfgffnRRKAMEIVSPLAAK--MSIKApnlDEQVSKLSGGNQQKVVLARWLARQPMLL 420
Cdd:COG1126 88 LFphLTVLENVtlAPIKVKKMS------KAEAEERAMELLERvgLADKA---DAYPAQLSGGQQQRVAIARALAMEPKVM 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 81855249 421 ILDEPTRGID---IGakaEIYRLIDELAASGIGIILISSEMpeliGLA----DRVLVMAGGRI 476
Cdd:COG1126 159 LFDEPTSALDpelVG---EVLDVMRDLAKEGMTMVVVTHEM----GFArevaDRVVFMDGGRI 214
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
272-476 |
3.05e-14 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 74.03 E-value: 3.05e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVpvlpnsphaaiVAGIGFAPEDRK------HEAL 345
Cdd:COG1118 18 LDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGR-----------DLFTNLPPRERRvgfvfqHYAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 346 llFR--SILDNAA--LCV--PDKTSSfgffnRRKAMEIvspLAAkmsIKAPNLDEQ-VSKLSGGNQQKVVLARWLARQPM 418
Cdd:COG1118 87 --FPhmTVAENIAfgLRVrpPSKAEI-----RARVEEL---LEL---VQLEGLADRyPSQLSGGQRQRVALARALAVEPE 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 81855249 419 LLILDEPTRGIDIGAKAEIYR-LIDELAASGIGIILISSEMPELIGLADRVLVMAGGRI 476
Cdd:COG1118 154 VLLLDEPFGALDAKVRKELRRwLRRLHDELGGTTVFVTHDQEEALELADRVVVMNQGRI 212
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
1-236 |
3.10e-14 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 72.05 E-value: 3.10e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 1 MTQSDFFSLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPrDSHR 80
Cdd:PRK10247 2 QENSPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKP-EIYR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 81 AGIRVIHQEPEIVPNlTVAENIfvgelprlagvLLDW--RKLEEQTDRV---LATFGMQQDMRPRQLcGTLGPAQRQMIE 155
Cdd:PRK10247 81 QQVSYCAQTPTLFGD-TVYDNL-----------IFPWqiRNQQPDPAIFlddLERFALPDTILTKNI-AELSGGEKQRIS 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 156 IMRAIRAGGRLIAFDEPTSSLTDDEARRLFSVVRRL-REKGTSIIYISHRLNEiIDLADRIVVLrdgrlvddSPAAGASE 234
Cdd:PRK10247 148 LIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYvREQNIAVLWVTHDKDE-INHADKVITL--------QPHAGEMQ 218
|
..
gi 81855249 235 QT 236
Cdd:PRK10247 219 EA 220
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
15-239 |
4.26e-14 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 72.35 E-value: 4.26e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 15 RFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVrhgstpIVFGEPRDSHRAGIRVIHQEPEIV- 93
Cdd:PRK13638 10 RYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAV------LWQGKPLDYSKRGLLALRQQVATVf 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 94 --PNltvaENIFVGELPrlAGVLLDWRKL----EEQTDRVLATFGMQQDMRPR-QLCGTLGPAQRQMIEIMRAIRAGGRL 166
Cdd:PRK13638 84 qdPE----QQIFYTDID--SDIAFSLRNLgvpeAEITRRVDEALTLVDAQHFRhQPIQCLSHGQKKRVAIAGALVLQARY 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 81855249 167 IAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVddspAAGASEQTIAK 239
Cdd:PRK13638 158 LLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQIL----THGAPGEVFAC 226
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
7-230 |
4.36e-14 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 72.51 E-value: 4.36e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 7 FSLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIvfgEPRDShRAGIRVI 86
Cdd:PRK10575 12 FALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPL---ESWSS-KAFARKV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 87 HQEPEIVP---NLTVAENIFVGELPrLAGVL-----LDWRKLEEQTDRVlatfgmqqDMRP--RQLCGTLGPAQRQMIEI 156
Cdd:PRK10575 88 AYLPQQLPaaeGMTVRELVAIGRYP-WHGALgrfgaADREKVEEAISLV--------GLKPlaHRLVDSLSGGERQRAWI 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 81855249 157 MRAIRAGGRLIAFDEPTSSLTDDEARRLFSVVRRL-REKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSPAA 230
Cdd:PRK10575 159 AMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLsQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPA 233
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
20-224 |
4.88e-14 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 70.42 E-value: 4.88e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 20 QALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIvfGEPRDSHRAGIRVIHQEPEIVpNLTVA 99
Cdd:cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPV--SDLEKALSSLISVLNQRPYLF-DTTLR 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 100 ENIfvGElpRLAGvlldwrkleeqtdrvlatfgmqqdmrprqlcgtlgpAQRQMIEIMRAIRAGGRLIAFDEPTSSLTDD 179
Cdd:cd03247 93 NNL--GR--RFSG------------------------------------GERQRLALARILLQDAPIVLLDEPTVGLDPI 132
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 81855249 180 EARRLFSVV-RRLREKgtSIIYISHRLNEiIDLADRIVVLRDGRLV 224
Cdd:cd03247 133 TERQLLSLIfEVLKDK--TLIWITHHLTG-IEHMDKILFLENGKII 175
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
16-228 |
5.30e-14 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 71.87 E-value: 5.30e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 16 FGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRIL----EGVSGPDTGTVRHGSTPIVFGEPRDSHRAGIRVIHQEPE 91
Cdd:PRK14247 13 FGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFnrliELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPN 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 92 IVPNLTVAENIFVGelPRLAGVLLDWRKLEEQTDRVLATFGMQQDMRPR--QLCGTLGPAQRQMIEIMRAIRAGGRLIAF 169
Cdd:PRK14247 93 PIPNLSIFENVALG--LKLNRLVKSKKELQERVRWALEKAQLWDEVKDRldAPAGKLSGGQQQRLCIARALAFQPEVLLA 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 81855249 170 DEPTSSLTDDEARRLFSVVRRLReKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSP 228
Cdd:PRK14247 171 DEPTANLDPENTAKIESLFLELK-KDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGP 228
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
8-222 |
5.36e-14 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 73.34 E-value: 5.36e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRF-GVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRI---LEGVSGpdtGTVRHGSTPIVFGEPRDShraGI 83
Cdd:PRK11650 5 KLQAVRKSYdGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMvagLERITS---GEIWIGGRVVNELEPADR---DI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 84 RVIHQEPEIVPNLTVAENIFVGelprlagvlLDWRKL--EEQTDRVLATFGMQQ-----DMRPRQLCGtlgpAQRQMIEI 156
Cdd:PRK11650 79 AMVFQNYALYPHMSVRENMAYG---------LKIRGMpkAEIEERVAEAARILElepllDRKPRELSG----GQRQRVAM 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 81855249 157 MRAIRAGGRLIAFDEPTSSLtdD---------EARRLFsvvRRLrekGTSIIYISHRLNEIIDLADRIVVLRDGR 222
Cdd:PRK11650 146 GRAIVREPAVFLFDEPLSNL--DaklrvqmrlEIQRLH---RRL---KTTSLYVTHDQVEAMTLADRVVVMNGGV 212
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
20-225 |
5.85e-14 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 72.35 E-value: 5.85e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 20 QALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFG-----EPRDSHRAgIRVIHQEPEI-V 93
Cdd:PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANlkkikEVKRLRKE-IGLVFQFPEYqL 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 94 PNLTVAENIFVGELPRLAGVLLDWRKLEEQTDRVlatfGMQQDM---RPRQLCGtlgpAQRQMIEIMRAIRAGGRLIAFD 170
Cdd:PRK13645 104 FQETIEKDIAFGPVNLGENKQEAYKKVPELLKLV----QLPEDYvkrSPFELSG----GQKRRVALAGIIAMDGNTLVLD 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 81855249 171 EPTSSLTDDEARRLFSVVRRL-REKGTSIIYISHRLNEIIDLADRIVVLRDGRLVD 225
Cdd:PRK13645 176 EPTGGLDPKGEEDFINLFERLnKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVIS 231
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
272-479 |
5.97e-14 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 74.43 E-value: 5.97e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVlPNSPHAAIVAGIGFAPEDrkheALLLFRSI 351
Cdd:COG1132 356 LKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDI-RDLTLESLRRQIGVVPQD----TFLFSGTI 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 352 LDNAALCVPDKTSSfgffnrrkamEIVSplAAKMS-----IKA-PN-LDEQV----SKLSGGNQQKVVLARWLARQPMLL 420
Cdd:COG1132 431 RENIRYGRPDATDE----------EVEE--AAKAAqahefIEAlPDgYDTVVgergVNLSGGQRQRIAIARALLKDPPIL 498
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 81855249 421 ILDEPTRGIDIGAKAEIYRLIDELAASGIGIIL---ISSempelIGLADRVLVMAGGRITAE 479
Cdd:COG1132 499 ILDEATSALDTETEALIQEALERLMKGRTTIVIahrLST-----IRNADRILVLDDGRIVEQ 555
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
393-478 |
7.45e-14 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 71.27 E-value: 7.45e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 393 DEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASG-IGIILIS---SEMPELIglaDRV 468
Cdd:COG1119 137 DRPFGTLSQGEQRRVLIARALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGaPTLVLVThhvEEIPPGI---THV 213
|
90
....*....|
gi 81855249 469 LVMAGGRITA 478
Cdd:COG1119 214 LLLKDGRVVA 223
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
274-483 |
9.05e-14 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 70.13 E-value: 9.05e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 274 DVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVlPNSPHAAIVAGIGFAPEDRkhealLLF----R 349
Cdd:cd03369 26 NVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDI-STIPLEDLRSSLTIIPQDP-----TLFsgtiR 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 350 SILDNaalcvpdktssfgfFNRRKAMEIVSPLAAKmsikapnldEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGI 429
Cdd:cd03369 100 SNLDP--------------FDEYSDEEIYGALRVS---------EGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASI 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 81855249 430 DIGAKAEIYRLIDELaASGIGIILISSEMPELIGLaDRVLVMAGGRItAELARP 483
Cdd:cd03369 157 DYATDALIQKTIREE-FTNSTILTIAHRLRTIIDY-DKILVMDAGEV-KEYDHP 207
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
274-483 |
9.27e-14 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 71.43 E-value: 9.27e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 274 DVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHAAIVAgigfapedrKHEALLLFRSILD 353
Cdd:COG4525 25 DVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVTGPGADRGVVF---------QKDALLPWLNVLD 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 354 NAAlcvpdktssFGFfnRRKAMeivsPLAAKMSIKAPNL---------DEQVSKLSGGNQQKVVLARWLARQPMLLILDE 424
Cdd:COG4525 96 NVA---------FGL--RLRGV----PKAERRARAEELLalvgladfaRRRIWQLSGGMRQRVGIARALAADPRFLLMDE 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 81855249 425 PTRGIDIGAKAEIYRLIDEL-AASGIGIILISSEMPELIGLADRVLVMAG--GRITAELARP 483
Cdd:COG4525 161 PFGALDALTREQMQELLLDVwQRTGKGVFLITHSVEEALFLATRLVVMSPgpGRIVERLELD 222
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
274-479 |
9.84e-14 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 70.21 E-value: 9.84e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 274 DVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHAAIVAGIgFapedrKHEALLLFRSILD 353
Cdd:cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSML-F-----QENNLFAHLTVEQ 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 354 NAALCVpdktsSFGFFNRRKAMEIVSPLAAKMSIKapNLDEQVS-KLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIG 432
Cdd:cd03298 90 NVGLGL-----SPGLKLTAEDRQAIEVALARVGLA--GLEKRLPgELSGGERQRVALARVLVRDKPVLLLDEPFAALDPA 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 81855249 433 AKAEIYRLIDEL-AASGIGIILISSEMPELIGLADRVLVMAGGRITAE 479
Cdd:cd03298 163 LRAEMLDLVLDLhAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQ 210
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
21-203 |
9.97e-14 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 69.69 E-value: 9.97e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 21 ALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIvfGEPRDSHRAGIRVIHQEPEIVPNLTVAE 100
Cdd:TIGR01189 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPL--AEQRDEPHENILYLGHLPGLKPELSALE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 101 NifvgelprlagvLLDWRKLEEQTDR----VLATFGMqqDMRPRQLCGTLGPAQRQMIEIMRAIRAGGRLIAFDEPTSSL 176
Cdd:TIGR01189 93 N------------LHFWAAIHGGAQRtiedALAAVGL--TGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTTAL 158
|
170 180
....*....|....*....|....*..
gi 81855249 177 TDDEARRLFSVVRRLREKGTSIIYISH 203
Cdd:TIGR01189 159 DKAGVALLAGLLRAHLARGGIVLLTTH 185
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
260-478 |
1.05e-13 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 70.73 E-value: 1.05e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 260 QLLDVAGLTtdRVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRiAGTIAMNGVPVLPNSPHAAIVAGIGFAPED 339
Cdd:PRK03695 2 QLNDVAVST--RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYLSQQQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 340 RKHEALLLFRSIldnaALCVPDKTSSfgffnrRKAMEIVSPLAAKMSIkAPNLDEQVSKLSGGNQQKVVLAR-----WLA 414
Cdd:PRK03695 79 TPPFAMPVFQYL----TLHQPDKTRT------EAVASALNEVAEALGL-DDKLGRSVNQLSGGEWQRVRLAAvvlqvWPD 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 81855249 415 RQP--MLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRITA 478
Cdd:PRK03695 148 INPagQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLA 213
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
11-230 |
1.12e-13 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 71.92 E-value: 1.12e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 11 GISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRIL---------------EGVSGPDTGTV--RHGSTPIVFG 73
Cdd:PRK11308 20 GLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLtmietptggelyyqgQDLLKADPEAQklLRQKIQIVFQ 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 74 EPRDS--HRAGIRVIHQEP-EIVPNLTVAEnifvgelprlagvlldwRKleEQTDRVLATFGM---QQDMRPRQLCGtlg 147
Cdd:PRK11308 100 NPYGSlnPRKKVGQILEEPlLINTSLSAAE-----------------RR--EKALAMMAKVGLrpeHYDRYPHMFSG--- 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 148 pAQRQMIEIMRAIRAGGRLIAFDEPTSSLtdD---EARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLV 224
Cdd:PRK11308 158 -GQRQRIAIARALMLDPDVVVADEPVSAL--DvsvQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234
|
....*.
gi 81855249 225 DDSPAA 230
Cdd:PRK11308 235 EKGTKE 240
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
9-224 |
1.12e-13 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 72.14 E-value: 1.12e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 9 LDGISKRFGV----VQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVrhgstpIVFGE------PRDS 78
Cdd:PRK11153 4 LKNISKVFPQggrtIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRV------LVDGQdltalsEKEL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 79 HRA--GIRVIHQEPEIVPNLTVAENIFvgeLP-RLAGV-----------LLDWRKLEEQTDRVlatfgmqqdmrPRQLCG 144
Cdd:PRK11153 78 RKArrQIGMIFQHFNLLSSRTVFDNVA---LPlELAGTpkaeikarvteLLELVGLSDKADRY-----------PAQLSG 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 145 tlgpAQRQMIEIMRAIRAGGRLIAFDEPTSSLTDDEARRLFSVVRRL-REKGTSIIYISHRLNEIIDLADRIVVLRDGRL 223
Cdd:PRK11153 144 ----GQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDInRELGLTIVLITHEMDVVKRICDRVAVIDAGRL 219
|
.
gi 81855249 224 V 224
Cdd:PRK11153 220 V 220
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
273-484 |
1.15e-13 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 73.54 E-value: 1.15e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 273 NDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRR---IAGTIAMNGVPVlpNSPHAAIVAGigFAPED---------R 340
Cdd:TIGR00955 42 KNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKgvkGSGSVLLNGMPI--DAKEMRAISA--YVQQDdlfiptltvR 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 341 KHealLLFRsildnAALCVPDKTSSfgffnrRKAMEIVSPL--------AAKMSIKAPNldeQVSKLSGGNQQKVVLARW 412
Cdd:TIGR00955 118 EH---LMFQ-----AHLRMPRRVTK------KEKRERVDEVlqalglrkCANTRIGVPG---RVKGLSGGERKRLAFASE 180
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 81855249 413 LARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIIL-ISSEMPELIGLADRVLVMAGGRiTAELARPD 484
Cdd:TIGR00955 181 LLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICtIHQPSSELFELFDKIILMAEGR-VAYLGSPD 252
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
22-223 |
1.34e-13 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 70.19 E-value: 1.34e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 22 LDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRhgstpiVFGEP----RDSHRAGIRVIH-----QEPEI 92
Cdd:PRK10584 26 LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVS------LVGQPlhqmDEEARAKLRAKHvgfvfQSFML 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 93 VPNLTVAENIfvgELPRLAGVLLDwRKLEEQTDRVLATFGMQQDMR--PRQLCGtlgpAQRQMIEIMRAIRAGGRLIAFD 170
Cdd:PRK10584 100 IPTLNALENV---ELPALLRGESS-RQSRNGAKALLEQLGLGKRLDhlPAQLSG----GEQQRVALARAFNGRPDVLFAD 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 81855249 171 EPTSSL---TDDE-ARRLFSVVrrlREKGTSIIYISHRlNEIIDLADRIVVLRDGRL 223
Cdd:PRK10584 172 EPTGNLdrqTGDKiADLLFSLN---REHGTTLILVTHD-LQLAARCDRRLRLVNGQL 224
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
273-487 |
1.42e-13 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 70.48 E-value: 1.42e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 273 NDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYD--RRIAGTIAMNGVPVLPNSPHAAIVAGIGFApedrkhealllF-- 348
Cdd:COG0396 17 KGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMGHPkyEVTSGSILLDGEDILELSPDERARAGIFLA-----------Fqy 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 349 ---------RSILDNAALCVPDKTSSFGFFNR--RKAMEIVSpLAAKMsikapnLDEQV-SKLSGGNQQKVVLARWLARQ 416
Cdd:COG0396 86 pveipgvsvSNFLRTALNARRGEELSAREFLKllKEKMKELG-LDEDF------LDRYVnEGFSGGEKKRNEILQMLLLE 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 81855249 417 PMLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILIS--SEMPELIGlADRVLVMAGGRI----TAELArPDIDE 487
Cdd:COG0396 159 PKLAILDETDSGLDIDALRIVAEGVNKLRSPDRGILIIThyQRILDYIK-PDFVHVLVDGRIvksgGKELA-LELEE 233
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
269-479 |
1.69e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 70.79 E-value: 1.69e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 269 TDRVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHAAI--VAGIGFapedRKHEALL 346
Cdd:PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIrkLVGIVF----QNPETQF 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 347 LFRSILDNAA-----LCVPDKTssfgfFNRRKAMEIVSPLAAKMSIKAPNldeqvsKLSGGNQQKVVLARWLARQPMLLI 421
Cdd:PRK13644 91 VGRTVEEDLAfgpenLCLPPIE-----IRKRVDRALAEIGLEKYRHRSPK------TLSGGQGQCVALAGILTMEPECLI 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 81855249 422 LDEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELiGLADRVLVMAGGRITAE 479
Cdd:PRK13644 160 FDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEEL-HDADRIIVMDRGKIVLE 216
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
273-483 |
1.90e-13 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 70.09 E-value: 1.90e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 273 NDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIaMNGvpvlpNSPHAAIVAGIGFAPEDRKheaLLLFRSIL 352
Cdd:PRK11247 29 NQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-LAG-----TAPLAEAREDTRLMFQDAR---LLPWKKVI 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 353 DNAALCVPDKTSSfgffNRRKAMEIVSplaakmsiKAPNLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIG 432
Cdd:PRK11247 100 DNVGLGLKGQWRD----AALQALAAVG--------LADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDAL 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 81855249 433 AKAEIYRLIDEL-AASGIGIILISSEMPELIGLADRVLVMAGGRI----TAELARP 483
Cdd:PRK11247 168 TRIEMQDLIESLwQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIgldlTVDLPRP 223
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
12-231 |
2.02e-13 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 70.63 E-value: 2.02e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 12 ISKRFGVVqaLDNVSIAFRPGEVLALVGENGAGKSTMMRILEG--VSGPDTGTVRHGSTPIVFGEPR---DSHR-AGIR- 84
Cdd:PRK13547 9 VARRHRAI--LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGdlTGGGAPRGARVTGDVTLNGEPLaaiDAPRlARLRa 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 85 VIHQEPEIVPNLTVAENIFVGELP--RLAGVLLdwRKLEEQTDRVLATFGmqQDMRPRQLCGTLGPAQRQMIEIMRAI-- 160
Cdd:PRK13547 87 VLPQAAQPAFAFSAREIVLLGRYPhaRRAGALT--HRDGEIAWQALALAG--ATALVGRDVTTLSGGELARVQFARVLaq 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 81855249 161 -------RAGGRLIAFDEPTSSLTDDEARRLFSVVRRL-REKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSPAAG 231
Cdd:PRK13547 163 lwpphdaAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLaRDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPAD 241
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
272-476 |
2.10e-13 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 71.26 E-value: 2.10e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHAAIVA--GIGFAPEdrkHEALLLFR 349
Cdd:COG1135 21 LDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTALSERELRAArrKIGMIFQ---HFNLLSSR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 350 SILDNAALcvpdktssfgffnrrkAMEIvsplaAKMS---IKA--PNLDEQV----------SKLSGGNQQKVVLARWLA 414
Cdd:COG1135 98 TVAENVAL----------------PLEI-----AGVPkaeIRKrvAELLELVglsdkadaypSQLSGGQKQRVGIARALA 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 81855249 415 RQPMLLILDEPTRGIDIGAKAEIYRLIDELAAS-GIGIILISSEMpELI-GLADRVLVMAGGRI 476
Cdd:COG1135 157 NNPKVLLCDEATSALDPETTRSILDLLKDINRElGLTIVLITHEM-DVVrRICDRVAVLENGRI 219
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
9-221 |
2.67e-13 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 69.73 E-value: 2.67e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 9 LDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGstpivfGEPRDSHRAGIRVIHQ 88
Cdd:PRK11248 4 ISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLD------GKPVEGPGAERGVVFQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 89 EPEIVPNLTVAENIFVGelPRLAGVLLDWRklEEQTDRVLATFGMQ--QDMRPRQLCGtlgpAQRQMIEIMRAIRAGGRL 166
Cdd:PRK11248 78 NEGLLPWRNVQDNVAFG--LQLAGVEKMQR--LEIAHQMLKKVGLEgaEKRYIWQLSG----GQRQRVGIARALAANPQL 149
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 81855249 167 IAFDEPTSSL---TDDEARRLfsVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDG 221
Cdd:PRK11248 150 LLLDEPFGALdafTREQMQTL--LLKLWQETGKQVLLITHDIEEAVFMATELVLLSPG 205
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
276-491 |
2.78e-13 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 69.23 E-value: 2.78e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 276 SLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSP----------------HAAIVAGIGFAped 339
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPsrrpvsmlfqennlfsHLTVAQNIGLG--- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 340 rKHEALLLfrsildNAAlcvpdktssfgffNRRKAMEIvsplAAKMSIKApNLDEQVSKLSGGNQQKVVLARWLARQPML 419
Cdd:PRK10771 96 -LNPGLKL------NAA-------------QREKLHAI----ARQMGIED-LLARLPGQLSGGQRQRVALARCLVREQPI 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 81855249 420 LILDEPTRGIDIGAKAEIYRLIDELAAS-GIGIILISSEMPELIGLADRVLVMAGGRI-----TAELARPDIDEATIL 491
Cdd:PRK10771 151 LLLDEPFSALDPALRQEMLTLVSQVCQErQLTLLMVSHSLEDAARIAPRSLVVADGRIawdgpTDELLSGKASASALL 228
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
274-483 |
2.81e-13 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 69.38 E-value: 2.81e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 274 DVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPV--LPNSPHAAIVAG-IGFapedrkheallLFRS 350
Cdd:COG4181 30 GISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLfaLDEDARARLRARhVGF-----------VFQS 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 351 I--------LDNAALCVPdktssfgFFNRRKAMEIVSPLAAKMSIKApNLDEQVSKLSGGNQQKVVLARWLARQPMLLIL 422
Cdd:COG4181 99 FqllptltaLENVMLPLE-------LAGRRDARARARALLERVGLGH-RLDHYPAQLSGGEQQRVALARAFATEPAILFA 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 81855249 423 DEPTRGIDIGAKAEIYRLIDEL-AASGIGIILISSEmPELIGLADRVLVMAGGRITAELARP 483
Cdd:COG4181 171 DEPTGNLDAATGEQIIDLLFELnRERGTTLVLVTHD-PALAARCDRVLRLRAGRLVEDTAAT 231
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
267-481 |
2.87e-13 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 69.46 E-value: 2.87e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 267 LTTDRVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVlpNSPHAAIVAgigfapEDRKHEALL 346
Cdd:PRK11629 20 VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPM--SKLSSAAKA------ELRNQKLGF 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 347 LFR--------SILDNAALCVpdktsSFGFFNRRKAMEivsplAAKMSIKAPNLDEQV----SKLSGGNQQKVVLARWLA 414
Cdd:PRK11629 92 IYQfhhllpdfTALENVAMPL-----LIGKKKPAEINS-----RALEMLAAVGLEHRAnhrpSELSGGERQRVAIARALV 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 81855249 415 RQPMLLILDEPTRGIDIGAKAEIYRLIDEL-AASGIGIILISSEMpELIGLADRVLVMAGGRITAELA 481
Cdd:PRK11629 162 NNPRLVLADEPTGNLDARNADSIFQLLGELnRLQGTAFLVVTHDL-QLAKRMSRQLEMRDGRLTAELS 228
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
22-224 |
3.07e-13 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 72.00 E-value: 3.07e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 22 LDNVSIAFRPGEVLALVGENGAGKSTMMRILegvSGPDTGTVRHGSTPIVFGEPRDSHRagIRVIH---QEPEI-VPNLT 97
Cdd:TIGR00955 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNAL---AFRSPKGVKGSGSVLLNGMPIDAKE--MRAISayvQQDDLfIPTLT 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 98 VAEN-IFVGELPRLAGVLLDWRKleEQTDRVLatfgmqQDMRprqlcgtLGPAQRQMIEI---MRAIRAGGR-------- 165
Cdd:TIGR00955 116 VREHlMFQAHLRMPRRVTKKEKR--ERVDEVL------QALG-------LRKCANTRIGVpgrVKGLSGGERkrlafase 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 81855249 166 ------LIAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHR-LNEIIDLADRIVVLRDGRLV 224
Cdd:TIGR00955 181 lltdppLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQpSSELFELFDKIILMAEGRVA 246
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
30-230 |
3.42e-13 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 69.23 E-value: 3.42e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 30 RPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVR-----HGSTPIvfgeprdSHRAgIRVIHQEPEIVPNLTVAENIFV 104
Cdd:PRK10771 23 ERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTlngqdHTTTPP-------SRRP-VSMLFQENNLFSHLTVAQNIGL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 105 GELPRLagvlldwrKLEEQTDRVLATFGMQ---QDMRPRqLCGTLGPAQRQMIEIMRAIRAGGRLIAFDEPTSSLtdDEA 181
Cdd:PRK10771 95 GLNPGL--------KLNAAQREKLHAIARQmgiEDLLAR-LPGQLSGGQRQRVALARCLVREQPILLLDEPFSAL--DPA 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 81855249 182 RR--LFSVVRRL-REKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSPAA 230
Cdd:PRK10771 164 LRqeMLTLVSQVcQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTD 215
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
17-224 |
3.96e-13 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 69.83 E-value: 3.96e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 17 GVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDShRAGIRVIHQEP-EIVPN 95
Cdd:PRK13652 15 GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREV-RKFVGLVFQNPdDQIFS 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 96 LTVAENIFVGelPRLAGvlLDWRKLEEQTDRVLATFGMQQ--DMRPRQLCGtlgpAQRQMIEIMRAIRAGGRLIAFDEPT 173
Cdd:PRK13652 94 PTVEQDIAFG--PINLG--LDEETVAHRVSSALHMLGLEElrDRVPHHLSG----GEKKRVAIAGVIAMEPQVLVLDEPT 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 81855249 174 SSLTDDEARRLFSVVRRLREK-GTSIIYISHRLNEIIDLADRIVVLRDGRLV 224
Cdd:PRK13652 166 AGLDPQGVKELIDFLNDLPETyGMTVIFSTHQLDLVPEMADYIYVMDKGRIV 217
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
272-476 |
4.27e-13 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 70.51 E-value: 4.27e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLpnsphaaivagiGFAPEDRK------HEAL 345
Cdd:COG3842 21 LDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVT------------GLPPEKRNvgmvfqDYAL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 346 LLFRSILDNAAlcvpdktssFGFFNRR-----------KAMEIV--SPLAAKMsikapnldeqVSKLSGGNQQKVVLARW 412
Cdd:COG3842 89 FPHLTVAENVA---------FGLRMRGvpkaeirarvaELLELVglEGLADRY----------PHQLSGGQQQRVALARA 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 413 LARQPMLLILDEPTRGIDigAK------AEIYRLIDELaasGIGIILISSEMPELIGLADRVLVMAGGRI 476
Cdd:COG3842 150 LAPEPRVLLLDEPLSALD--AKlreemrEELRRLQREL---GITFIYVTHDQEEALALADRIAVMNDGRI 214
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
257-487 |
4.31e-13 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 69.41 E-value: 4.31e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 257 SGEQLLDVAGLTTDRVN-----DVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNG--VPVLPNSPHAAI 329
Cdd:PRK11831 3 SVANLVDMRGVSFTRGNrcifdNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGenIPAMSRSRLYTV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 330 vagigfapedRKHEALL-----LFR--SILDNAAlcvpdktssfgfFNRRKAMEIVSPL---AAKMSIKAPNL----DEQ 395
Cdd:PRK11831 83 ----------RKRMSMLfqsgaLFTdmNVFDNVA------------YPLREHTQLPAPLlhsTVMMKLEAVGLrgaaKLM 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 396 VSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDEL-AASGIGIILISSEMPELIGLADRVLVMAGG 474
Cdd:PRK11831 141 PSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELnSALGVTCVVVSHDVPEVLSIADHAYIVADK 220
|
250
....*....|...
gi 81855249 475 RITAELARPDIDE 487
Cdd:PRK11831 221 KIVAHGSAQALQA 233
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
22-203 |
5.30e-13 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 67.98 E-value: 5.30e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 22 LDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPR-DSHRAGirviHQEPeIVPNLTVAE 100
Cdd:PRK13539 18 FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAeACHYLG----HRNA-MKPALTVAE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 101 NifvgelprlagvLLDWRKL----EEQTDRVLATFGMqQDMRPRQLcGTLGPAQRQMIEIMRAIRAGGRLIAFDEPTSSL 176
Cdd:PRK13539 93 N------------LEFWAAFlggeELDIAAALEAVGL-APLAHLPF-GYLSAGQKRRVALARLLVSNRPIWILDEPTAAL 158
|
170 180
....*....|....*....|....*...
gi 81855249 177 tDDEARRLF-SVVRRLREKGTSIIYISH 203
Cdd:PRK13539 159 -DAAAVALFaELIRAHLAQGGIVIAATH 185
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
272-476 |
5.51e-13 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 70.21 E-value: 5.51e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHAAIVA--GIG--FapedrKHEALLL 347
Cdd:PRK11153 21 LNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKArrQIGmiF-----QHFNLLS 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 348 FRSILDNAALcvPDKTSsfgffNRRKAmEI---VSPLAAK--MSIKApnlDEQVSKLSGGNQQKVVLARWLARQPMLLIL 422
Cdd:PRK11153 96 SRTVFDNVAL--PLELA-----GTPKA-EIkarVTELLELvgLSDKA---DRYPAQLSGGQKQRVAIARALASNPKVLLC 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 81855249 423 DEPTRGIDIGAKAEIYRLIDELAAS-GIGIILISSEMPELIGLADRVLVMAGGRI 476
Cdd:PRK11153 165 DEATSALDPATTRSILELLKDINRElGLTIVLITHEMDVVKRICDRVAVIDAGRL 219
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
20-224 |
5.99e-13 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 68.95 E-value: 5.99e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 20 QALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVrhgstpIVFGEPRDSHRAGIRVIHQEPEIV---PN- 95
Cdd:PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV------LIKGEPIKYDKKSLLEVRKTVGIVfqnPDd 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 96 ----LTVAENIFVGELprlaGVLLDWRKLEEQTDRVLATFGMQ--QDMRPRQLCGtlgpAQRQMIEIMRAIRAGGRLIAF 169
Cdd:PRK13639 90 qlfaPTVEEDVAFGPL----NLGLSKEEVEKRVKEALKAVGMEgfENKPPHHLSG----GQKKRVAIAGILAMKPEIIVL 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 81855249 170 DEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLV 224
Cdd:PRK13639 162 DEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKII 216
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
272-476 |
7.53e-13 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 68.62 E-value: 7.53e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNS-----PHAAIVagigFA-PEDRKHEAL 345
Cdd:PRK13648 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNfeklrKHIGIV----FQnPDNQFVGSI 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 346 LLFrsilDNAalcvpdktssFGFFNR----RKAMEIVSPLAAK--MSIKApnlDEQVSKLSGGNQQKVVLARWLARQPML 419
Cdd:PRK13648 101 VKY----DVA----------FGLENHavpyDEMHRRVSEALKQvdMLERA---DYEPNALSGGQKQRVAIAGVLALNPSV 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 81855249 420 LILDEPTRGIDIGAKAEIYRLIDELAAS-GIGIILISSEMPELIGlADRVLVMAGGRI 476
Cdd:PRK13648 164 IILDEATSMLDPDARQNLLDLVRKVKSEhNITIISITHDLSEAME-ADHVIVMNKGTV 220
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
254-448 |
8.36e-13 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 68.76 E-value: 8.36e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 254 TWRSGEQLLdvaglttdrvNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVlpnsPHAAIVAGI 333
Cdd:PRK15056 15 TWRNGHTAL----------RDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPT----RQALQKNLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 334 GFAPEdrKHEALLLFRSILDNAALCvpDKTSSFGFFNRRKA--MEIVSPLAAKMSIKAPNlDEQVSKLSGGNQQKVVLAR 411
Cdd:PRK15056 81 AYVPQ--SEEVDWSFPVLVEDVVMM--GRYGHMGWLRRAKKrdRQIVTAALARVDMVEFR-HRQIGELSGGQKKRVFLAR 155
|
170 180 190
....*....|....*....|....*....|....*..
gi 81855249 412 WLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASG 448
Cdd:PRK15056 156 AIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEG 192
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
246-471 |
8.65e-13 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 69.35 E-value: 8.65e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 246 IDDLFTRETWRSGEQLLDVAGLTTDRVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLpnsp 325
Cdd:PRK15079 11 VADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL---- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 326 haaivagiGFAPEDRKH---EALLLFRSILD--NAALCV------PDKTssfgFFNRRKAMEIVSPLAAKMsIKA---PN 391
Cdd:PRK15079 87 --------GMKDDEWRAvrsDIQMIFQDPLAslNPRMTIgeiiaePLRT----YHPKLSRQEVKDRVKAMM-LKVgllPN 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 392 L-DEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAAS-GIGIILISSEMPELIGLADRVL 469
Cdd:PRK15079 154 LiNRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREmGLSLIFIAHDLAVVKHISDRVL 233
|
..
gi 81855249 470 VM 471
Cdd:PRK15079 234 VM 235
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
17-228 |
8.71e-13 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 69.45 E-value: 8.71e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 17 GVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPD----TGTVRHGSTPIVFGEPRDSHRA---GIRVIHQE 89
Cdd:PRK15093 18 GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNwrvtADRMRFDDIDLLRLSPRERRKLvghNVSMIFQE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 90 PEIVpnLTVAENIFVGELPRLAGVL--------LDWRKleEQTDRVLATFGMQQD---MR--PRQLcgTLGPAQRQMIEI 156
Cdd:PRK15093 98 PQSC--LDPSERVGRQLMQNIPGWTykgrwwqrFGWRK--RRAIELLHRVGIKDHkdaMRsfPYEL--TEGECQKVMIAI 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 81855249 157 mrAIRAGGRLIAFDEPTSSLTDDEARRLFSVVRRLREK-GTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSP 228
Cdd:PRK15093 172 --ALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNnNTTILLISHDLQMLSQWADKINVLYCGQTVETAP 242
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
4-218 |
9.01e-13 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 68.22 E-value: 9.01e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 4 SDFFSLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHgstpivfgeprdSHRAGI 83
Cdd:PRK09544 2 TSLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKR------------NGKLRI 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 84 RVIHQEPEIVPNLTVAENIFVGELP--RLAGVLldwrkleEQTDRVLATFGMQQDMrpRQLCGtlGPAQRQMIEimRAIR 161
Cdd:PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLRPgtKKEDIL-------PALKRVQAGHLIDAPM--QKLSG--GETQRVLLA--RALL 136
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 81855249 162 AGGRLIAFDEPTSSLTDDEARRLFSVVRRLR-EKGTSIIYISHRLNEIIDLADRIVVL 218
Cdd:PRK09544 137 NRPQLLVLDEPTQGVDVNGQVALYDLIDQLRrELDCAVLMVSHDLHLVMAKTDEVLCL 194
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
260-479 |
1.03e-12 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 68.12 E-value: 1.03e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 260 QLLDVAGLTTDRVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSP-----HAAIVAGIG 334
Cdd:PRK11231 6 ENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSrqlarRLALLPQHH 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 335 FAPEDRKHEALLLF-RSILDN--AALCVPDKTSSfgffnrRKAMEI--VSPLAakmsikapnlDEQVSKLSGGNQQKVVL 409
Cdd:PRK11231 86 LTPEGITVRELVAYgRSPWLSlwGRLSAEDNARV------NQAMEQtrINHLA----------DRRLTDLSGGQRQRAFL 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 410 ARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRITAE 479
Cdd:PRK11231 150 AMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQ 219
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
22-223 |
1.21e-12 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 66.75 E-value: 1.21e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 22 LDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIvfGEPRDSHRAGIRVIHQEPEIVPNLTVAEN 101
Cdd:cd03231 16 FSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPL--DFQRDSIARGLLYLGHAPGIKTTLSVLEN 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 102 ifvgelprlagvLLDWRKL--EEQTDRVLATFGMQQ-DMRPrqlCGTLGPAQRQMIEIMRAIRAGGRLIAFDEPTSSLTD 178
Cdd:cd03231 94 ------------LRFWHADhsDEQVEEALARVGLNGfEDRP---VAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDK 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 81855249 179 DEARRLFSVVRRLREKGTSIIYISHrlneiIDLADRIVVLRDGRL 223
Cdd:cd03231 159 AGVARFAEAMAGHCARGGMVVLTTH-----QDLGLSEAGARELDL 198
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
10-244 |
1.23e-12 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 68.09 E-value: 1.23e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 10 DGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTV-RHGSTPIVFGEPRDSHRAGIrvIHQ 88
Cdd:PRK10253 11 EQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVwLDGEHIQHYASKEVARRIGL--LAQ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 89 EPEIVPNLTVAENIFVGELPRlAGVLLDWRKL-EEQTDRVLATFGMQQdmRPRQLCGTLGPAQRQMIEIMRAIRAGGRLI 167
Cdd:PRK10253 89 NATTPGDITVQELVARGRYPH-QPLFTRWRKEdEEAVTKAMQATGITH--LADQSVDTLSGGQRQRAWIAMVLAQETAIM 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 81855249 168 AFDEPTSSLTDDEARRLFSVVRRL-REKGTSIIYISHRLNEIIDLADRIVVLRDGRLVddspAAGASEQTIAKLMVGR 244
Cdd:PRK10253 166 LLDEPTTWLDISHQIDLLELLSELnREKGYTLAAVLHDLNQACRYASHLIALREGKIV----AQGAPKEIVTAELIER 239
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
272-484 |
1.29e-12 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 67.71 E-value: 1.29e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIvgyDRRI---AGTIAMNGVPVLPNSPhAAIVAGIGFAPEDRkheALLLF 348
Cdd:cd03295 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMI---NRLIeptSGEIFIDGEDIREQDP-VELRRKIGYVIQQI---GLFPH 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 349 RSILDNAALcVPdktsSFGFFNRRKAMEIVSPLAAKMSIKAPNL-DEQVSKLSGGNQQKVVLARWLARQPMLLILDEPtr 427
Cdd:cd03295 90 MTVEENIAL-VP----KLLKWPKEKIRERADELLALVGLDPAEFaDRYPHELSGGQQQRVGVARALAADPPLLLMDEP-- 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 81855249 428 gidIGAKAEIYR--LIDELA----ASGIGIILISSEMPELIGLADRVLVMAGGRItAELARPD 484
Cdd:cd03295 163 ---FGALDPITRdqLQEEFKrlqqELGKTIVFVTHDIDEAFRLADRIAIMKNGEI-VQVGTPD 221
|
|
| HisP |
COG4598 |
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; |
8-222 |
1.41e-12 |
|
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 67.52 E-value: 1.41e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDSH-------- 79
Cdd:COG4598 10 EVRDLHKSFGDLEVLKGVSLTARKGDVISIIGSSGSGKSTFLRCINLLETPDSGEIRVGGEEIRLKPDRDGElvpadrrq 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 80 ----RAGIRVIHQEPEIVPNLTVAENIFvgELPRlaGVL-LDWRKLEEQTDRVLATFGM--QQDMRPRQLCGtlgpAQRQ 152
Cdd:COG4598 90 lqriRTRLGMVFQSFNLWSHMTVLENVI--EAPV--HVLgRPKAEAIERAEALLAKVGLadKRDAYPAHLSG----GQQQ 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81855249 153 MIEIMRAIRAGGRLIAFDEPTSSLtDDE-ARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGR 222
Cdd:COG4598 162 RAAIARALAMEPEVMLFDEPTSAL-DPElVGEVLKVMRDLAEEGRTMLVVTHEMGFARDVSSHVVFLHQGR 231
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
8-68 |
1.43e-12 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 65.16 E-value: 1.43e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81855249 8 SLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGST 68
Cdd:cd03221 2 ELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST 62
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
272-475 |
1.97e-12 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 66.69 E-value: 1.97e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTI----AMNGVPVLPNSPHAaIVA----GIGF-------- 335
Cdd:COG4778 27 LDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSIlvrhDGGWVDLAQASPRE-ILAlrrrTIGYvsqflrvi 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 336 ---APEDRKHEALLlfrsildnaALCVPDKTSsfgffnRRKAMEIVSPLaakmsikapNLDEQVSKL-----SGGNQQKV 407
Cdd:COG4778 106 prvSALDVVAEPLL---------ERGVDREEA------RARARELLARL---------NLPERLWDLppatfSGGEQQRV 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 81855249 408 VLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGR 475
Cdd:COG4778 162 NIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAKARGTAIIGIFHDEEVREAVADRVVDVTPFS 229
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
21-224 |
2.22e-12 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 67.46 E-value: 2.22e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 21 ALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFG-EPRD--SHRAGIRVIHQEPEI-VPNL 96
Cdd:PRK13649 22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTsKNKDikQIRKKVGLVFQFPESqLFEE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 97 TVAENIFVGelPRLAGVllDWRKLEEQTDRVLATFGMQQDMR---PRQLCGtlGPAQRQMIEIMRAIRAggRLIAFDEPT 173
Cdd:PRK13649 102 TVLKDVAFG--PQNFGV--SQEEAEALAREKLALVGISESLFeknPFELSG--GQMRRVAIAGILAMEP--KILVLDEPT 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 81855249 174 SSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLV 224
Cdd:PRK13649 174 AGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLV 224
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
8-228 |
2.33e-12 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 65.90 E-value: 2.33e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFG--VVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVfGEPRDSHRAGIRV 85
Cdd:cd03369 8 EVENLSVRYApdLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDIS-TIPLEDLRSSLTI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 86 IHQEPEIVPNlTVAENifvgelprlagvlLDwrKLEEQTDRVLATfgmqqDMRPRQLCGTLGPAQRQMIEIMRAIRAGGR 165
Cdd:cd03369 87 IPQDPTLFSG-TIRSN-------------LD--PFDEYSDEEIYG-----ALRVSEGGLNLSQGQRQLLCLARALLKRPR 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 81855249 166 LIAFDEPTSSLtDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLaDRIVVLRDGRLVD-DSP 228
Cdd:cd03369 146 VLVLDEATASI-DYATDALIQKTIREEFTNSTILTIAHRLRTIIDY-DKILVMDAGEVKEyDHP 207
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
274-474 |
2.40e-12 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 67.03 E-value: 2.40e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 274 DVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVlpNSPHAAivAGIGFapedrKHEALLLFRSILD 353
Cdd:PRK11248 19 DINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPV--EGPGAE--RGVVF-----QNEGLLPWRNVQD 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 354 NAAlcvpdktssFGFFNRRKAMEIVSPLAAKMSIKApNLDE----QVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGI 429
Cdd:PRK11248 90 NVA---------FGLQLAGVEKMQRLEIAHQMLKKV-GLEGaekrYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGAL 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 81855249 430 DIGAKAEIYRLIDEL-AASGIGIILISSEMPELIGLADRVLVMAGG 474
Cdd:PRK11248 160 DAFTREQMQTLLLKLwQETGKQVLLITHDIEEAVFMATELVLLSPG 205
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
22-228 |
2.79e-12 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 67.04 E-value: 2.79e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 22 LDNVSIAFRPGEVLALVGENGAGKSTMMRIL----EGVSGPD-TGTVRHGSTPIVFGEPRDSHRAGIRVIHQEPEIVPnL 96
Cdd:PRK14271 37 LDQVSMGFPARAVTSLMGPTGSGKTTFLRTLnrmnDKVSGYRySGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-M 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 97 TVAENIFVGELprlAGVLLDWRKLEEQTDRVLATFGMQQDMR------PRQLCGtlgpAQRQMIEIMRAIRAGGRLIAFD 170
Cdd:PRK14271 116 SIMDNVLAGVR---AHKLVPRKEFRGVAQARLTEVGLWDAVKdrlsdsPFRLSG----GQQQLLCLARTLAVNPEVLLLD 188
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 81855249 171 EPTSSLTDDEARRLFSVVRRLREKGTSIIyISHRLNEIIDLADRIVVLRDGRLVDDSP 228
Cdd:PRK14271 189 EPTSALDPTTTEKIEEFIRSLADRLTVII-VTHNLAQAARISDRAALFFDGRLVEEGP 245
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
21-222 |
2.83e-12 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 65.57 E-value: 2.83e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 21 ALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTpivfgeprdshragIRVIHQEPEIVpNLTVAE 100
Cdd:cd03250 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGS--------------IAYVSQEPWIQ-NGTIRE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 101 NIfvgelprLAGVLLDwrklEEQTDRVLATFGMQQDMRprQLCG-----------TLGPAQRQMIEIMRAIRAGGRLIAF 169
Cdd:cd03250 85 NI-------LFGKPFD----EERYEKVIKACALEPDLE--ILPDgdlteigekgiNLSGGQKQRISLARAVYSDADIYLL 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 81855249 170 DEPTSSLTDDEARRLF-SVVRRLREKGTSIIYISHRLnEIIDLADRIVVLRDGR 222
Cdd:cd03250 152 DDPLSAVDAHVGRHIFeNCILGLLLNNKTRILVTHQL-QLLPHADQIVVLDNGR 204
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
274-476 |
3.59e-12 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 65.96 E-value: 3.59e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 274 DVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPvLPNSPHA---AIVAGIGfapedrkHEALLLFRS 350
Cdd:cd03248 32 DVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKP-ISQYEHKylhSKVSLVG-------QEPVLFARS 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 351 ILDNAALCVPDKtsSFGFF----NRRKAMEIVSPLAAKMSIKApnlDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPT 426
Cdd:cd03248 104 LQDNIAYGLQSC--SFECVkeaaQKAHAHSFISELASGYDTEV---GEKGSQLSGGQKQRVAIARALIRNPQVLILDEAT 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 81855249 427 RGIDIGAKAEIYRLIDElAASGIGIILISSEMpELIGLADRVLVMAGGRI 476
Cdd:cd03248 179 SALDAESEQQVQQALYD-WPERRTVLVIAHRL-STVERADQILVLDGGRI 226
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
7-224 |
3.65e-12 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 68.14 E-value: 3.65e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 7 FSLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVF---GEPRDSHRAGI 83
Cdd:PRK10070 29 LSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKisdAELREVRRKKI 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 84 RVIHQEPEIVPNLTVAENIFVGElpRLAGVLLDWRKleEQTDRVLATFGMQQDMR--PRQLCGTLgpaqRQMIEIMRAIR 161
Cdd:PRK10070 109 AMVFQSFALMPHMTVLDNTAFGM--ELAGINAEERR--EKALDALRQVGLENYAHsyPDELSGGM----RQRVGLARALA 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 81855249 162 AGGRLIAFDEPTSSLTDDEARRLFSVVRRLREKGT-SIIYISHRLNEIIDLADRIVVLRDGRLV 224
Cdd:PRK10070 181 INPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQrTIVFISHDLDEAMRIGDRIAIMQNGEVV 244
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
7-431 |
3.73e-12 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 68.42 E-value: 3.73e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 7 FSLDGISKRFGV-VQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRhgstpivfgePRDSHRAGIrv 85
Cdd:TIGR03719 5 YTMNRVSKVVPPkKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFNGEAR----------PQPGIKVGY-- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 86 IHQEPEIVPNLTVAENIF--VGE----LPRLAGVLLDWRKLEEQTDRVLATFGMQQDMRPRQLCGTLgpaQRQMIEIMRA 159
Cdd:TIGR03719 73 LPQEPQLDPTKTVRENVEegVAEikdaLDRFNEISAKYAEPDADFDKLAAEQAELQEIIDAADAWDL---DSQLEIAMDA 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 160 IR-----------AGG--RLIA-------------FDEPTSSLtDDEarrlfSVV---RRLRE-KGTsIIYISHRLNEII 209
Cdd:TIGR03719 150 LRcppwdadvtklSGGerRRVAlcrlllskpdmllLDEPTNHL-DAE-----SVAwleRHLQEyPGT-VVAVTHDRYFLD 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 210 DLADRIVVLRDG------------------RLVDDSPAAGASEQTIAKLM-------VGR---------NIDDLFTRETW 255
Cdd:TIGR03719 223 NVAGWILELDRGrgipwegnysswleqkqkRLEQEEKEESARQKTLKRELewvrqspKGRqakskarlaRYEELLSQEFQ 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 256 --------------RSGEQLLDVAGLTT---DRV--NDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMn 316
Cdd:TIGR03719 303 krnetaeiyippgpRLGDKVIEAENLTKafgDKLliDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEI- 381
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 317 GVPVlpnspHAAIVagigfapeDRKHEAL----LLFRSILD-NAALCVPDKT-------SSFGFfnrrkameivsplaak 384
Cdd:TIGR03719 382 GETV-----KLAYV--------DQSRDALdpnkTVWEEISGgLDIIKLGKREipsrayvGRFNF---------------- 432
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 81855249 385 msiKAPNLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDI 431
Cdd:TIGR03719 433 ---KGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDV 476
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
272-476 |
3.86e-12 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 67.41 E-value: 3.86e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLpnsphaaivagiGFAPEDRK------HEAL 345
Cdd:COG3839 19 LKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVT------------DLPPKDRNiamvfqSYAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 346 LLFRSILDNAAlcvpdktssFGFFNRR--KAmEI---VSPLAAKMSIkAPNLDEQVSKLSGGNQQKVVLARWLARQPMLL 420
Cdd:COG3839 87 YPHMTVYENIA---------FPLKLRKvpKA-EIdrrVREAAELLGL-EDLLDRKPKQLSGGQRQRVALGRALVREPKVF 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 81855249 421 ILDEPTRGIDigAK------AEIYRLIDELaasGIGIILISSEMPELIGLADRVLVMAGGRI 476
Cdd:COG3839 156 LLDEPLSNLD--AKlrvemrAEIKRLHRRL---GTTTIYVTHDQVEAMTLADRIAVMNDGRI 212
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
21-224 |
3.88e-12 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 66.99 E-value: 3.88e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 21 ALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDSH-RAGIRVIHQEPEI-VPNLTV 98
Cdd:PRK13637 22 ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDiRKKVGLVFQYPEYqLFEETI 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 99 AENIFVGelPRLAGvlLDWRKLEEQTDRVLATFGMQ----QDMRPRQLCGtlgpAQRQMIEIMRAIRAGGRLIAFDEPTS 174
Cdd:PRK13637 102 EKDIAFG--PINLG--LSEEEIENRVKRAMNIVGLDyedyKDKSPFELSG----GQKRRVAIAGVVAMEPKILILDEPTA 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 81855249 175 SLtDDEAR-RLFSVVRRLREK-GTSIIYISHRLNEIIDLADRIVVLRDGRLV 224
Cdd:PRK13637 174 GL-DPKGRdEILNKIKELHKEyNMTIILVSHSMEDVAKLADRIIVMNKGKCE 224
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
261-475 |
4.02e-12 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 67.55 E-value: 4.02e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 261 LLDVAGLTTD-----RVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHaaivagigf 335
Cdd:PRK11607 19 LLEIRNLTKSfdgqhAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPY--------- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 336 apedrKHEALLLFRSILDNAALCVpDKTSSFGFFNRRKAM-EIVSPLAAKMSI--------KAPNldeqvsKLSGGNQQK 406
Cdd:PRK11607 90 -----QRPINMMFQSYALFPHMTV-EQNIAFGLKQDKLPKaEIASRVNEMLGLvhmqefakRKPH------QLSGGQRQR 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 407 VVLARWLARQPMLLILDEPTRGIDIGAKAEI-YRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGR 475
Cdd:PRK11607 158 VALARSLAKRPKLLLLDEPMGALDKKLRDRMqLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGK 227
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
269-479 |
4.61e-12 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 66.64 E-value: 4.61e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 269 TDRVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHAAIV---AGIGFA-PEDRkhea 344
Cdd:PRK13639 15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVrktVGIVFQnPDDQ---- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 345 lLLFRSILDNAAlcvpdktssFGFFNRRKAMEIVSPlAAKMSIKAPNLDEQVSK----LSGGNQQKVVLARWLARQPMLL 420
Cdd:PRK13639 91 -LFAPTVEEDVA---------FGPLNLGLSKEEVEK-RVKEALKAVGMEGFENKpphhLSGGQKKRVAIAGILAMKPEII 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 421 ILDEPTRGIDIGAKAEIYRLIDELAASGIGIIlISSEMPELIGL-ADRVLVMAGGRITAE 479
Cdd:PRK13639 160 VLDEPTSGLDPMGASQIMKLLYDLNKEGITII-ISTHDVDLVPVyADKVYVMSDGKIIKE 218
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
21-239 |
5.42e-12 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 68.21 E-value: 5.42e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 21 ALDNVSIAFRPGE-VL-------------ALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVfgepRDSH---RAGI 83
Cdd:PRK10790 342 DIDNVSFAYRDDNlVLqninlsvpsrgfvALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLS----SLSHsvlRQGV 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 84 RVIHQEPEIVPNlTVAENIFVGELPRLAGVlldWRKLEEQTdrvLATF--GMQQDMRPR--QLCGTLGPAQRQMIEIMRA 159
Cdd:PRK10790 418 AMVQQDPVVLAD-TFLANVTLGRDISEEQV---WQALETVQ---LAELarSLPDGLYTPlgEQGNNLSVGQKQLLALARV 490
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 160 IRAGGRLIAFDEPTSSLTDDEARRLFSVVRRLREKgTSIIYISHRLNEIIDlADRIVVLRDGRLVDDspaaGASEQTIAK 239
Cdd:PRK10790 491 LVQTPQILILDEATANIDSGTEQAIQQALAAVREH-TTLVVIAHRLSTIVE-ADTILVLHRGQAVEQ----GTHQQLLAA 564
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
272-479 |
5.75e-12 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 64.26 E-value: 5.75e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLpnSPHAAIVAGIGFAPEdRKHeallLFRSI 351
Cdd:cd03247 18 LKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVS--DLEKALSSLISVLNQ-RPY----LFDTT 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 352 LDNaalcvpdktssfgffnrrkameivsplaakmsikapNLDEQvskLSGGNQQKVVLARWLARQPMLLILDEPTRGIDI 431
Cdd:cd03247 91 LRN------------------------------------NLGRR---FSGGERQRLALARILLQDAPIVLLDEPTVGLDP 131
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 81855249 432 GAKAEIYRLIDElAASGIGIILISSempELIGL--ADRVLVMAGGRITAE 479
Cdd:cd03247 132 ITERQLLSLIFE-VLKDKTLIWITH---HLTGIehMDKILFLENGKIIMQ 177
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
204-455 |
6.23e-12 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 67.77 E-value: 6.23e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 204 RLNEIIDLADRIV-VLRDGRLVDDS--PAAGASEQTiaklMVGRNIDDLFTRetWRSGEQLLDvaglttdrvnDVSLRVR 280
Cdd:TIGR02868 296 QLTRVRAAAERIVeVLDAAGPVAEGsaPAAGAVGLG----KPTLELRDLSAG--YPGAPPVLD----------GVSLDLP 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 281 RGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVlPNSPHAAIVAGIGFAPEDrkheALLLFRSILDNAALCVP 360
Cdd:TIGR02868 360 PGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPV-SSLDQDEVRRRVSVCAQD----AHLFDTTVRENLRLARP 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 361 DKTSSfgffNRRKAMEIV---SPLAAKMSIKAPNLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEI 437
Cdd:TIGR02868 435 DATDE----ELWAALERVglaDWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADEL 510
|
250
....*....|....*....
gi 81855249 438 yrLIDELAA-SGIGIILIS 455
Cdd:TIGR02868 511 --LEDLLAAlSGRTVVLIT 527
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
399-477 |
6.26e-12 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 66.31 E-value: 6.26e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 81855249 399 LSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRIT 477
Cdd:PRK13649 146 LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLV 224
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
253-476 |
6.45e-12 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 65.84 E-value: 6.45e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 253 ETWRSGEQLLDVAGL---TTDR--VNDVSLRVRRGEVLGIAGLMGAGRSELAKA----IVGYDRRIA--GTIAMNGVPVL 321
Cdd:PRK14246 2 EAGKSAEDVFNISRLylyINDKaiLKDITIKIPNNSIFGIMGPSGSGKSTLLKVlnrlIEIYDSKIKvdGKVLYFGKDIF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 322 P-NSPHAAIVAGIGFA-PEDRKHealllfRSILDNAALcvPDKtsSFGFFNRRKAMEIVSPLAAKMSIKAP---NLDEQV 396
Cdd:PRK14246 82 QiDAIKLRKEVGMVFQqPNPFPH------LSIYDNIAY--PLK--SHGIKEKREIKKIVEECLRKVGLWKEvydRLNSPA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 397 SKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASgIGIILISSEMPELIGLADRVLVMAGGRI 476
Cdd:PRK14246 152 SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNE-IAIVIVSHNPQQVARVADYVAFLYNGEL 230
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
272-476 |
6.66e-12 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 65.91 E-value: 6.66e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIamngvpvlpnsphaaIVAGIGFAPE---DRKHEALLLF 348
Cdd:PRK13650 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI---------------IIDGDLLTEEnvwDIRHKIGMVF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 349 RSIlDN--AALCVPDKTSsFGFFNR-----------RKAMEIVSPLAAKmsikapnlDEQVSKLSGGNQQKVVLARWLAR 415
Cdd:PRK13650 88 QNP-DNqfVGATVEDDVA-FGLENKgipheemkervNEALELVGMQDFK--------EREPARLSGGQKQRVAIAGAVAM 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 81855249 416 QPMLLILDEPTRGIDIGAKAEIYRLIDELAAS-GIGIILISSEMPElIGLADRVLVMAGGRI 476
Cdd:PRK13650 158 RPKIIILDEATSMLDPEGRLELIKTIKGIRDDyQMTVISITHDLDE-VALSDRVLVMKNGQV 218
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
381-499 |
7.03e-12 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 67.35 E-value: 7.03e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 381 LAAKMSIKAPnLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILIS---SE 457
Cdd:PRK10938 119 LAQQFGITAL-LDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLnrfDE 197
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 81855249 458 MPELIG----LADRVLVMAGGR-------ITAELAR---------PDIDEATIlKHAMPQSA 499
Cdd:PRK10938 198 IPDFVQfagvLADCTLAETGEReeilqqaLVAQLAHseqlegvqlPEPDEPSA-RHALPANE 258
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
269-479 |
7.86e-12 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 66.02 E-value: 7.86e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 269 TDRVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPV-LPNSPHAAIVAGIGFAPEDRKHEalLL 347
Cdd:PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIdYSRKGLMKLRESVGMVFQDPDNQ--LF 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 348 FRSILDNAalcvpdktsSFGFFN----RRKAMEIVSPLAAKMSIkAPNLDEQVSKLSGGNQQKVVLARWLARQPMLLILD 423
Cdd:PRK13636 97 SASVYQDV---------SFGAVNlklpEDEVRKRVDNALKRTGI-EHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLD 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 81855249 424 EPTRGIDIGAKAEIYRLIDELaASGIGI-ILISSEMPELIGL-ADRVLVMAGGRITAE 479
Cdd:PRK13636 167 EPTAGLDPMGVSEIMKLLVEM-QKELGLtIIIATHDIDIVPLyCDNVFVMKEGRVILQ 223
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
20-224 |
8.10e-12 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 65.91 E-value: 8.10e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 20 QALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDS---HRAGIRVIHQEPEI-VPN 95
Cdd:PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEikpVRKKVGVVFQFPESqLFE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 96 LTVAENIFVGelPRLAGVllDWRKLEEQTDRVLATFGMQQDM---RPRQLCGtlgpAQRQMIEIMRAIRAGGRLIAFDEP 172
Cdd:PRK13643 100 ETVLKDVAFG--PQNFGI--PKEKAEKIAAEKLEMVGLADEFwekSPFELSG----GQMRRVAIAGILAMEPEVLVLDEP 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 81855249 173 TSSLtDDEAR-RLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLV 224
Cdd:PRK13643 172 TAGL-DPKARiEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHII 223
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
20-225 |
8.11e-12 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 66.27 E-value: 8.11e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 20 QALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTV-------RHGSTpivfgEPRDSHRAGIRVIHQEP-- 90
Cdd:PRK15079 35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVawlgkdlLGMKD-----DEWRAVRSDIQMIFQDPla 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 91 EIVPNLTVAENI------FVGELPRlagvlldwrklEEQTDRV---LATFGMQQDM---RPRQLCGtlgpAQRQMIEIMR 158
Cdd:PRK15079 110 SLNPRMTIGEIIaeplrtYHPKLSR-----------QEVKDRVkamMLKVGLLPNLinrYPHEFSG----GQCQRIGIAR 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 81855249 159 AIRAGGRLIAFDEPTSSLTDDEARRLFSVVRRL-REKGTSIIYISHRLNEIIDLADRIVVLRDGRLVD 225
Cdd:PRK15079 175 ALILEPKLIICDEPVSALDVSIQAQVVNLLQQLqREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVE 242
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
22-235 |
9.77e-12 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 64.86 E-value: 9.77e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 22 LDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSgPDTGTVRHGSTPIVFGEPRD--SHRAgirVIHQEPEIVPNLTV- 98
Cdd:COG4138 12 LGPISAQVNAGELIHLIGPNGAGKSTLLARMAGLL-PGQGEILLNGRPLSDWSAAElaRHRA---YLSQQQSPPFAMPVf 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 99 -------AENIFVGELPRLAGVLLDWRKLEEQTDRVLATF--GMQQDMRprqLCGTLgpaqrqmIEIMRAIRAGGRLIAF 169
Cdd:COG4138 88 qylalhqPAGASSEAVEQLLAQLAEALGLEDKLSRPLTQLsgGEWQRVR---LAAVL-------LQVWPTINPEGQLLLL 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 81855249 170 DEPTSSLtdDEARR--LFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVddspAAGASEQ 235
Cdd:COG4138 158 DEPMNSL--DVAQQaaLDRLLRELCQQGITVVMSSHDLNHTLRHADRVWLLKQGKLV----ASGETAE 219
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
272-476 |
1.07e-11 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 65.16 E-value: 1.07e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPhaaIVAGIGFAPEDRKHEALL----- 346
Cdd:PRK11264 19 LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARS---LSQQKGLIRQLRQHVGFVfqnfn 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 347 LF--RSILDNA--ALCVPDKTSsfgffnRRKAMEIVSPLAAKMSIkAPNLDEQVSKLSGGNQQKVVLARWLARQPMLLIL 422
Cdd:PRK11264 96 LFphRTVLENIieGPVIVKGEP------KEEATARARELLAKVGL-AGKETSYPRRLSGGQQQRVAIARALAMRPEVILF 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 81855249 423 DEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRI 476
Cdd:PRK11264 169 DEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRI 222
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
12-224 |
1.08e-11 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 64.51 E-value: 1.08e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 12 ISKRF-GVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDSH--RAGIRVIHQ 88
Cdd:PRK10908 7 VSKAYlGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPflRRQIGMIFQ 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 89 EPEIVPNLTVAENIFVGELprLAGVLLD--WRKLEEQTDRVlatfGMQQDMR--PRQLCGtlgpAQRQMIEIMRAIRAGG 164
Cdd:PRK10908 87 DHHLLMDRTVYDNVAIPLI--IAGASGDdiRRRVSAALDKV----GLLDKAKnfPIQLSG----GEQQRVGIARAVVNKP 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 165 RLIAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLV 224
Cdd:PRK10908 157 AVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
275-479 |
1.17e-11 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 64.99 E-value: 1.17e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 275 VSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNG--VPVLPNSPHAAIVAgigfapeDRKHEALLLFR--- 349
Cdd:PRK10619 24 VSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGqtINLVRDKDGQLKVA-------DKNQLRLLRTRltm 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 350 -----------SILDNaalcVPDKTSSFGFFNRRKAMEIVSPLAAKMSIKAPNLDEQVSKLSGGNQQKVVLARWLARQPM 418
Cdd:PRK10619 97 vfqhfnlwshmTVLEN----VMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPE 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81855249 419 LLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRITAE 479
Cdd:PRK10619 173 VLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 233
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
272-500 |
1.21e-11 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 65.92 E-value: 1.21e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGY----DRRIAGTIAMNGVPVLPNSPHA------AIVAGIGFAPEDRK 341
Cdd:PRK11022 23 VDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLidypGRVMAEKLEFNGQDLQRISEKErrnlvgAEVAMIFQDPMTSL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 342 HEALLLFRSILDnaALcvpdKTSSFGffNRRKAMEIVSPLAAKMSIKAP--NLDEQVSKLSGGNQQKVVLARWLARQPML 419
Cdd:PRK11022 103 NPCYTVGFQIME--AI----KVHQGG--NKKTRRQRAIDLLNQVGIPDPasRLDVYPHQLSGGMSQRVMIAMAIACRPKL 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 420 LILDEPTRGIDIGAKAEIYRLIDELA-ASGIGIILISSEMPELIGLADRVLVMAGGRITAELARPDIDEA------TILK 492
Cdd:PRK11022 175 LIADEPTTALDVTIQAQIIELLLELQqKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAprhpytQALL 254
|
....*...
gi 81855249 493 HAMPQSAS 500
Cdd:PRK11022 255 RALPEFAQ 262
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
273-476 |
1.23e-11 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 64.48 E-value: 1.23e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 273 NDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHAaIVAGIGFAPEdrkhEALLLFRSIL 352
Cdd:cd03249 20 KGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRW-LRSQIGLVSQ----EPVLFDGTIA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 353 DNAALCVPDKTSSfgffnrrkamEIVSplAAKMS------IKAPN-LDEQV----SKLSGGNQQKVVLARWLARQPMLLI 421
Cdd:cd03249 95 ENIRYGKPDATDE----------EVEE--AAKKAnihdfiMSLPDgYDTLVgergSQLSGGQKQRIAIARALLRNPKILL 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 81855249 422 LDEPTRGIDIGAKAEIYRLIDElAASGIGIILI----SSempelIGLADRVLVMAGGRI 476
Cdd:cd03249 163 LDEATSALDAESEKLVQEALDR-AMKGRTTIVIahrlST-----IRNADLIAVLQNGQV 215
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
274-479 |
1.26e-11 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 66.75 E-value: 1.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 274 DVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYD--RRIAGTIAMNgVPVLPNSPHAAIVAGIG---------FAPED--- 339
Cdd:TIGR03269 18 NISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDqyEPTSGRIIYH-VALCEKCGYVERPSKVGepcpvcggtLEPEEvdf 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 340 -----------RKHEALLLFRSIldnaALCVPDKTssfgFFNRRKAMEIVSPLAAKMSIKAPNLDEQVS----------K 398
Cdd:TIGR03269 97 wnlsdklrrriRKRIAIMLQRTF----ALYGDDTV----LDNVLEALEEIGYEGKEAVGRAVDLIEMVQlshrithiarD 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 399 LSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELA-ASGIGIIlISSEMPELIG-LADRVLVMAGGRI 476
Cdd:TIGR03269 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVkASGISMV-LTSHWPEVIEdLSDKAIWLENGEI 247
|
...
gi 81855249 477 TAE 479
Cdd:TIGR03269 248 KEE 250
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
3-221 |
1.27e-11 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 67.73 E-value: 1.27e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 3 QSDFFSLDGISKRFGVVQ--ALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGvsgpDTgTVRHGSTPIVfgepRDSHR 80
Cdd:TIGR01257 1934 KTDILRLNELTKVYSGTSspAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTG----DT-TVTSGDATVA----GKSIL 2004
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 81 AGIRVIHQEPEIVPNLTVAENIFVGE-----LPRLAGVllDWRKLEEQTDRVLATFGMQqdMRPRQLCGTLGPAQRQMIE 155
Cdd:TIGR01257 2005 TNISDVHQNMGYCPQFDAIDDLLTGRehlylYARLRGV--PAEEIEKVANWSIQSLGLS--LYADRLAGTYSGGNKRKLS 2080
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 81855249 156 IMRAIRAGGRLIAFDEPTSSLtDDEARR-LFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDG 221
Cdd:TIGR01257 2081 TAIALIGCPPLVLLDEPTTGM-DPQARRmLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKG 2146
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
8-456 |
1.34e-11 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 66.90 E-value: 1.34e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDSHRA------ 81
Cdd:PRK11147 5 SIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNvegtvy 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 82 -----GIRVI-------HQEPEIVPNLTVAENIfvGELPRLAGVL--LDWRKLEEQTDRVLATFGMQQDMrprQLCGTLG 147
Cdd:PRK11147 85 dfvaeGIEEQaeylkryHDISHLVETDPSEKNL--NELAKLQEQLdhHNLWQLENRINEVLAQLGLDPDA---ALSSLSG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 148 PAQRQmIEIMRAIRAGGRLIAFDEPTSSLTDDEARRL--FsvvrrLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVD 225
Cdd:PRK11147 160 GWLRK-AALGRALVSNPDVLLLDEPTNHLDIETIEWLegF-----LKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVS 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 226 -----DSPAAGASEQtiakLMVGRNIDDLFTR-----ETW-RSG----------------------EQLLDVAGL----- 267
Cdd:PRK11147 234 ypgnyDQYLLEKEEA----LRVEELQNAEFDRklaqeEVWiRQGikarrtrnegrvralkalrrerSERREVMGTakmqv 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 268 -TTDR--------------------VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIamngvpvlpnspH 326
Cdd:PRK11147 310 eEASRsgkivfemenvnyqidgkqlVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI------------H 377
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 327 AAIVAGIgfAPEDRKHEALLLFRSILDNAALCVPDKT------------SSFGFfnrrkameivSPLAAKMSIKApnlde 394
Cdd:PRK11147 378 CGTKLEV--AYFDQHRAELDPEKTVMDNLAEGKQEVMvngrprhvlgylQDFLF----------HPKRAMTPVKA----- 440
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 81855249 395 qvskLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIgakaEIYRLIDELAASGIGIILISS 456
Cdd:PRK11147 441 ----LSGGERNRLLLARLFLKPSNLLILDEPTNDLDV----ETLELLEELLDSYQGTVLLVS 494
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
371-476 |
1.66e-11 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 64.26 E-value: 1.66e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 371 RRKAMEIVSPLA-AKMSIKAPNLdeqvskLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASGI 449
Cdd:COG4161 119 REKAMKLLARLRlTDKADRFPLH------LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQVVEIIRELSQTGI 192
|
90 100
....*....|....*....|....*..
gi 81855249 450 GIILISSEMPELIGLADRVLVMAGGRI 476
Cdd:COG4161 193 TQVIVTHEVEFARKVASQVVYMEKGRI 219
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
22-204 |
1.73e-11 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 63.43 E-value: 1.73e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 22 LDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRhgstpiVFGEPRDSHRAGIR----VIHQEPEIVPNLT 97
Cdd:PRK13540 17 LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEIL------FERQSIKKDLCTYQkqlcFVGHRSGINPYLT 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 98 VAENIFVgELPRLAGVLldwrkleeQTDRVLATFGMQQDMR-PrqlCGTLGPAQRQMIEIMRAIRAGGRLIAFDEPTSSL 176
Cdd:PRK13540 91 LRENCLY-DIHFSPGAV--------GITELCRLFSLEHLIDyP---CGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVAL 158
|
170 180
....*....|....*....|....*...
gi 81855249 177 TDDEARRLFSVVRRLREKGTSIIYISHR 204
Cdd:PRK13540 159 DELSLLTIITKIQEHRAKGGAVLLTSHQ 186
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
268-477 |
1.82e-11 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 63.44 E-value: 1.82e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 268 TTDRVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVG---YDRRIAGTIAMNGVPVLP--NSPHAAIVagigFAPEDRKH 342
Cdd:cd03233 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANrteGNVSVEGDIHYNGIPYKEfaEKYPGEII----YVSEEDVH 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 343 EALLLFRSILDNAALCvpdktssfgffnrrkameivsplaakmsikapNLDEQVSKLSGGNQQKVVLARWLARQPMLLIL 422
Cdd:cd03233 95 FPTLTVRETLDFALRC--------------------------------KGNEFVRGISGGERKRVSIAEALVSRASVLCW 142
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 81855249 423 DEPTRGIDIGAKAEIYRLIDELA--ASGIGIILISSEMPELIGLADRVLVMAGGRIT 477
Cdd:cd03233 143 DNSTRGLDSSTALEILKCIRTMAdvLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQI 199
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
399-476 |
2.02e-11 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 63.88 E-value: 2.02e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 81855249 399 LSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRI 476
Cdd:PRK11124 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHI 219
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
274-479 |
2.21e-11 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 63.78 E-value: 2.21e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 274 DVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLpNSPHAAIVAGIGFAPEDrkheALLLFRSILD 353
Cdd:cd03254 21 DINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIR-DISRKSLRSMIGVVLQD----TFLFSGTIME 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 354 NAALCVPDKTssfgffnrrKAMEIVSPLAAKMS---IKAPN-LDEQVSK----LSGGNQQKVVLARWLARQPMLLILDEP 425
Cdd:cd03254 96 NIRLGRPNAT---------DEEVIEAAKEAGAHdfiMKLPNgYDTVLGEnggnLSQGERQLLAIARAMLRDPKILILDEA 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 81855249 426 TRGIDIGAKAEIYRLIDELAASGIGIILisSEMPELIGLADRVLVMAGGRITAE 479
Cdd:cd03254 167 TSNIDTETEKLIQEALEKLMKGRTSIII--AHRLSTIKNADKILVLDDGKIIEE 218
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
20-226 |
2.22e-11 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 64.72 E-value: 2.22e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 20 QALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRhgstpIVFGEPRDSHRAGIRVIHQEpEIVPNLTVA 99
Cdd:PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIE-----WIFKDEKNKKKTKEKEKVLE-KLVIQKTRF 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 100 ENI-FVGELPRLAGVLLDWR--KLEEQTDRVLATFGmqqdmrPRQLCGTLGPAQ---RQMIEIM---------------- 157
Cdd:PRK13651 95 KKIkKIKEIRRRVGVVFQFAeyQLFEQTIEKDIIFG------PVSMGVSKEEAKkraAKYIELVgldesylqrspfelsg 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 81855249 158 ----RAIRAG-----GRLIAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDD 226
Cdd:PRK13651 169 gqkrRVALAGilamePDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKD 246
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
272-491 |
2.26e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 64.44 E-value: 2.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIvgydrriagtiamNGVpVLP--NSPHAAIVAGIGFAPE---DRKHEALL 346
Cdd:PRK13640 23 LNDISFSIPRGSWTALIGHNGSGKSTISKLI-------------NGL-LLPddNPNSKITVDGITLTAKtvwDIREKVGI 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 347 LFRSIlDN--AALCVPDKTSsFGFFNR---RKAM-EIVSPLAAKMSIkAPNLDEQVSKLSGGNQQKVVLARWLARQPMLL 420
Cdd:PRK13640 89 VFQNP-DNqfVGATVGDDVA-FGLENRavpRPEMiKIVRDVLADVGM-LDYIDSEPANLSGGQKQRVAIAGILAVEPKII 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 81855249 421 ILDEPTRGIDIGAKAEIYRLIDELAA-SGIGIILISSEMPELIGlADRVLVMAGGRITAELARPDIDEATIL 491
Cdd:PRK13640 166 ILDESTSMLDPAGKEQILKLIRKLKKkNNLTVISITHDIDEANM-ADQVLVLDDGKLLAQGSPVEIFSKVEM 236
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
15-238 |
2.45e-11 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 66.54 E-value: 2.45e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 15 RFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMM----RILEGVSG----PDTGTVRHGSTPIvfgeprdshRAGIRVI 86
Cdd:PLN03232 1245 RPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLnalfRIVELEKGrimiDDCDVAKFGLTDL---------RRVLSII 1315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 87 HQEPEIVPNlTVAENIFVGELPRLAGVlldWRKLE-----EQTDRvlATFGMQQDMRPRQLCGTLGpaQRQMIEIMRAIR 161
Cdd:PLN03232 1316 PQSPVLFSG-TVRFNIDPFSEHNDADL---WEALErahikDVIDR--NPFGLDAEVSEGGENFSVG--QRQLLSLARALL 1387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 162 AGGRLIAFDEPTSSLtddEARRLFSVVRRLRE--KGTSIIYISHRLNEIIDlADRIVVLRDGRLVD-DSPAAGASEQTIA 238
Cdd:PLN03232 1388 RRSKILVLDEATASV---DVRTDSLIQRTIREefKSCTMLVIAHRLNTIID-CDKILVLSSGQVLEyDSPQELLSRDTSA 1463
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
272-474 |
2.51e-11 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 65.98 E-value: 2.51e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMngvpvlpnsphaaivagigfaPEDRKhealLLF--- 348
Cdd:COG4178 379 LEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYGSGRIAR---------------------PAGAR----VLFlpq 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 349 RS--ILDN--AALCVPDKTSSFGFFNRRKAMEIV--SPLAAKmsikapnLDEQVS---KLSGGNQQKVVLARWLARQPML 419
Cdd:COG4178 434 RPylPLGTlrEALLYPATAEAFSDAELREALEAVglGHLAER-------LDEEADwdqVLSLGEQQRLAFARLLLHKPDW 506
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 81855249 420 LILDEPTRGIDIGAKAEIYRLI-DELAasGIGIILISSEmPELIGLADRVLVMAGG 474
Cdd:COG4178 507 LFLDEATSALDEENEAALYQLLrEELP--GTTVISVGHR-STLAAFHDRVLELTGD 559
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
25-224 |
2.56e-11 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 63.80 E-value: 2.56e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 25 VSIAFRPGEVLALVGENGAGKSTMMRILEGVSgPDTGTVRHGSTPIVFGEPRD-SHRAGIRVIHQEPeiVPNLTVAE--N 101
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAElARHRAYLSQQQTP--PFAMPVFQylT 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 102 IFVGELPRLAGVlldwrklEEQTDRVLATFGMQqDMRPR---QLCGtlGPAQR-----QMIEIMRAIRAGGRLIAFDEPT 173
Cdd:PRK03695 92 LHQPDKTRTEAV-------ASALNEVAEALGLD-DKLGRsvnQLSG--GEWQRvrlaaVVLQVWPDINPAGQLLLLDEPM 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 81855249 174 SSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLV 224
Cdd:PRK03695 162 NSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLL 212
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
257-484 |
3.16e-11 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 65.05 E-value: 3.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 257 SGEQLLDVAGLTTDrVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVlpnsphaaivAGIGFA 336
Cdd:PRK10070 30 SKEQILEKTGLSLG-VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDI----------AKISDA 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 337 P--EDRKHEALLLFRSILDNAALCVPDKTSsFGffnrrkaMEIVSPLAAKMSIKAPNLDEQV----------SKLSGGNQ 404
Cdd:PRK10070 99 ElrEVRRKKIAMVFQSFALMPHMTVLDNTA-FG-------MELAGINAEERREKALDALRQVglenyahsypDELSGGMR 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 405 QKVVLARWLARQPMLLILDEPTRGIDIGAKAEIY-RLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRITaELARP 483
Cdd:PRK10070 171 QRVGLARALAINPDILLMDEAFSALDPLIRTEMQdELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVV-QVGTP 249
|
.
gi 81855249 484 D 484
Cdd:PRK10070 250 D 250
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
266-476 |
5.09e-11 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 65.15 E-value: 5.09e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 266 GLTTDRVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPvLPNSPHAAIVAGIGFAPEdrkhEAL 345
Cdd:TIGR01193 484 GYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFS-LKDIDRHTLRQFINYLPQ----EPY 558
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 346 LLFRSILDNAALCVPDKTSsfgffnRRKAMEIVSPLAAKMSIK------APNLDEQVSKLSGGNQQKVVLARWLARQPML 419
Cdd:TIGR01193 559 IFSGSILENLLLGAKENVS------QDEIWAACEIAEIKDDIEnmplgyQTELSEEGSSISGGQKQRIALARALLTDSKV 632
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 81855249 420 LILDEPTRGIDIGAKAEIyrlIDELAASGIGIILISSEMPELIGLADRVLVMAGGRI 476
Cdd:TIGR01193 633 LILDESTSNLDTITEKKI---VNNLLNLQDKTIIFVAHRLSVAKQSDKIIVLDHGKI 686
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
30-473 |
5.32e-11 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 64.81 E-value: 5.32e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 30 RPGEVLALVGENGAGKSTMMRILEGVSGPDTGTvrhgstpivFGEPRD-----SHRAG--------------IRVIH--Q 88
Cdd:COG1245 97 KKGKVTGILGPNGIGKSTALKILSGELKPNLGD---------YDEEPSwdevlKRFRGtelqdyfkklangeIKVAHkpQ 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 89 EPEIVPNLTVAEnifVGELprLAGVllDWR-KLEEQTDRVLATFGMQQDMRprQLCGtlGPAQRqmIEIMRAIRAGGRLI 167
Cdd:COG1245 168 YVDLIPKVFKGT---VREL--LEKV--DERgKLDELAEKLGLENILDRDIS--ELSG--GELQR--VAIAAALLRDADFY 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 168 AFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLnEIID-LADRIVVLRdGrlvddSPAA-GaseqTIAKLM---V 242
Cdd:COG1245 235 FFDEPSSYLDIYQRLNVARLIRELAEEGKYVLVVEHDL-AILDyLADYVHILY-G-----EPGVyG----VVSKPKsvrV 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 243 GRN------------------ID-DLFTRETWRSGEQLLDVAGLTTDRvNDVSLRV-----RRGEVLGIAGLMGAGRSEL 298
Cdd:COG1245 304 GINqyldgylpeenvrirdepIEfEVHAPRREKEEETLVEYPDLTKSY-GGFSLEVeggeiREGEVLGIVGPNGIGKTTF 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 299 AKAIVGydrriagtiamngvpVL-PNSPHAAIVAGIGFAPEDRKHEALLLFRSILDNAAlcVPDKTSSFgFFNrrkamEI 377
Cdd:COG1245 383 AKILAG---------------VLkPDEGEVDEDLKISYKPQYISPDYDGTVEEFLRSAN--TDDFGSSY-YKT-----EI 439
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 378 VSPLAAKmsikaPNLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDI-----GAKAeIYRLIDELAASGI--- 449
Cdd:COG1245 440 IKPLGLE-----KLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVeqrlaVAKA-IRRFAENRGKTAMvvd 513
|
490 500
....*....|....*....|....*
gi 81855249 450 -GIILIssempELIglADRVLVMAG 473
Cdd:COG1245 514 hDIYLI-----DYI--SDRLMVFEG 531
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
274-476 |
5.63e-11 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 65.13 E-value: 5.63e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 274 DVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPvLPNSPHAAI---VAGIGfapedrkHEALLLFRS 350
Cdd:TIGR00958 499 GLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVP-LVQYDHHYLhrqVALVG-------QEPVLFSGS 570
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 351 ILDNAAlcvpdktssFGFfnRRKAMEIVSPlAAKMS------IKAPN-----LDEQVSKLSGGNQQKVVLARWLARQPML 419
Cdd:TIGR00958 571 VRENIA---------YGL--TDTPDEEIMA-AAKAAnahdfiMEFPNgydteVGEKGSQLSGGQKQRIAIARALVRKPRV 638
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 81855249 420 LILDEPTRGIDigakAEIYRLIDEL-AASGIGIILISSEMPeLIGLADRVLVMAGGRI 476
Cdd:TIGR00958 639 LILDEATSALD----AECEQLLQESrSRASRTVLLIAHRLS-TVERADQILVLKKGSV 691
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
257-483 |
6.03e-11 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 64.71 E-value: 6.03e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 257 SGEQLLDVAGL---------TTDRVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVG----YDRRIAGTIAMNGVPVLPN 323
Cdd:COG4172 2 MSMPLLSVEDLsvafgqgggTVEAVKGVSFDIAAGETLALVGESGSGKSVTALSILRllpdPAAHPSGSILFDGQDLLGL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 324 SPHA--AIVAG-IGFA---------P----EDRKHEALLLFRSILDNAAlcvpdktssfgffnRRKAMEivspLAAKMSI 387
Cdd:COG4172 82 SERElrRIRGNrIAMIfqepmtslnPlhtiGKQIAEVLRLHRGLSGAAA--------------RARALE----LLERVGI 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 388 KAPN--LDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDEL-AASGIGIILISSEMPELIGL 464
Cdd:COG4172 144 PDPErrLDAYPHQLSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLqRELGMALLLITHDLGVVRRF 223
|
250 260
....*....|....*....|....*
gi 81855249 465 ADRVLVMAGGRI-----TAEL-ARP 483
Cdd:COG4172 224 ADRVAVMRQGEIveqgpTAELfAAP 248
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
21-236 |
7.40e-11 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 64.35 E-value: 7.40e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 21 ALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIvfgePR---DSHRAGIRVIHQEPEIVPNlT 97
Cdd:PRK10789 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPL----TKlqlDSWRSRLAVVSQTPFLFSD-T 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 98 VAENIFVG----------ELPRLAGVLLDWRKLEEqtdrvlatfGMQQDMRPRQLcgTLGPAQRQMIEIMRAIRAGGRLI 167
Cdd:PRK10789 405 VANNIALGrpdatqqeieHVARLASVHDDILRLPQ---------GYDTEVGERGV--MLSGGQKQRISIARALLLNAEIL 473
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 81855249 168 AFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYiSHRLNEIIDlADRIVVLRDGRLVDDSPAAGASEQT 236
Cdd:PRK10789 474 ILDDALSAVDGRTEHQILHNLRQWGEGRTVIIS-AHRLSALTE-ASEILVMQHGHIAQRGNHDQLAQQS 540
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
20-221 |
7.62e-11 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 65.13 E-value: 7.62e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 20 QALDNVSIAFRPGEVLALVGENGAGKSTMMRILegvSGPDTGTVRHGSTPIVFGEPRDSHRAGIRVIHQEPEI-VPNLTV 98
Cdd:TIGR00956 777 VILNNVDGWVKPGTLTALMGASGAGKTTLLNVL---AERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLhLPTSTV 853
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 99 AEN-IFVGELPRLAGV-----------LLDWRKLEEQTDRVLATFGmqqdmrprqlCGtLGPAQRQMIEIMRAIRAGGRL 166
Cdd:TIGR00956 854 RESlRFSAYLRQPKSVsksekmeyveeVIKLLEMESYADAVVGVPG----------EG-LNVEQRKRLTIGVELVAKPKL 922
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 81855249 167 IAF-DEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEII-DLADRIVVLRDG 221
Cdd:TIGR00956 923 LLFlDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILfEEFDRLLLLQKG 979
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
21-239 |
8.32e-11 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 62.73 E-value: 8.32e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 21 ALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVfGEPRDSHRAGIR----VIHQEPEivPNL 96
Cdd:PRK13634 22 ALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVIT-AGKKNKKLKPLRkkvgIVFQFPE--HQL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 97 ---TVAENIFVGelPRLAGVLLDwrKLEEQTDRVLATFGMQQDMR---PRQLCGtlgpAQrqmieiMRAIRAGGRL---- 166
Cdd:PRK13634 99 feeTVEKDICFG--PMNFGVSEE--DAKQKAREMIELVGLPEELLarsPFELSG----GQ------MRRVAIAGVLamep 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 81855249 167 --IAFDEPTSSLtDDEARR-LFSVVRRL-REKGTSIIYISHRLNEIIDLADRIVVLRDGRLVddspAAGASEQTIAK 239
Cdd:PRK13634 165 evLVLDEPTAGL-DPKGRKeMMEMFYKLhKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVF----LQGTPREIFAD 236
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
272-479 |
9.16e-11 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 61.39 E-value: 9.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVG---YdRRIAGTIAMNGVPVLPNSPHAAIVAGIGFAPEDrkhealllf 348
Cdd:cd03217 16 LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGhpkY-EVTEGEILFKGEDITDLPPEERARLGIFLAFQY--------- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 349 rsildnaalcvPDKTS--SFGFFNRrkameivsplaakmsikapNLDEqvsKLSGGNQQKVVLARWLARQPMLLILDEPT 426
Cdd:cd03217 86 -----------PPEIPgvKNADFLR-------------------YVNE---GFSGGEKKRNEILQLLLLEPDLAILDEPD 132
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 81855249 427 RGIDIGAKAEIYRLIDELAASGIGIILIS--SEMPELIgLADRVLVMAGGRITAE 479
Cdd:cd03217 133 SGLDIDALRLVAEVINKLREEGKSVLIIThyQRLLDYI-KPDRVHVLYDGRIVKS 186
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
272-476 |
9.45e-11 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 61.86 E-value: 9.45e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSpHAAIVAGIGFAPEDrkheALLLFRSI 351
Cdd:cd03251 18 LRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYT-LASLRRQIGLVSQD----VFLFNDTV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 352 LDNAALCVPDKTssfgffnrRKAMEIVSPLAAKMS--IKAPN-----LDEQVSKLSGGNQQKVVLARWLARQPMLLILDE 424
Cdd:cd03251 93 AENIAYGRPGAT--------REEVEEAARAANAHEfiMELPEgydtvIGERGVKLSGGQRQRIAIARALLKDPPILILDE 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 81855249 425 PTRGIDIGAKAEIYRLIDELAASGIGIIL---ISSempelIGLADRVLVMAGGRI 476
Cdd:cd03251 165 ATSALDTESERLVQAALERLMKNRTTFVIahrLST-----IENADRIVVLEDGKI 214
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
19-228 |
1.09e-10 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 64.11 E-value: 1.09e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 19 VQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPI--VFGEPRDSHRAGIRVIHQEP--EIVP 94
Cdd:PRK10261 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIdtLSPGKLQALRRDIQFIFQDPyaSLDP 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 95 NLTVAENIFvgELPRLAGvLLDWRKLEEQTDRVLATFGMQQDMR---PRQLCGtlgpAQRQMIEIMRAIRAGGRLIAFDE 171
Cdd:PRK10261 417 RQTVGDSIM--EPLRVHG-LLPGKAAAARVAWLLERVGLLPEHAwryPHEFSG----GQRQRICIARALALNPKVIIADE 489
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 81855249 172 PTSSLTDDEARRLFSVVRRL-REKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSP 228
Cdd:PRK10261 490 AVSALDVSIRGQIINLLLDLqRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGP 547
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
21-236 |
1.10e-10 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 62.21 E-value: 1.10e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 21 ALDNVSIAFRPGEVLALVGENGAGKSTMMRILegvsgpdTGTVRHGSTPI-VFGEP--RDSHRAGIRVIHQEPEI---VP 94
Cdd:PRK15056 22 ALRDASFTVPGGSIAALVGVNGSGKSTLFKAL-------MGFVRLASGKIsILGQPtrQALQKNLVAYVPQSEEVdwsFP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 95 NLtVAENIFVGELPRLAGVLLDWRKLEEQTDRVLATFGMQqDMRPRQLcGTLGPAQRQMIEIMRAIRAGGRLIAFDEPTS 174
Cdd:PRK15056 95 VL-VEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMV-EFRHRQI-GELSGGQKKRVFLARAIAQQGQVILLDEPFT 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 81855249 175 SLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLvddspAAGASEQT 236
Cdd:PRK15056 172 GVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVL-----ASGPTETT 228
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
239-474 |
1.14e-10 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 64.65 E-value: 1.14e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 239 KLMVGRNIDDLFtretwRSGEQLLDVAGLTTDRVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGV 318
Cdd:TIGR01257 1927 RIISGGNKTDIL-----RLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGK 2001
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 319 PVLPNSphAAIVAGIGFAPEDRKHEALLLFRSILDNAALC--VPDKTssfgffnrrkaMEIVsplaAKMSIKAPNL---- 392
Cdd:TIGR01257 2002 SILTNI--SDVHQNMGYCPQFDAIDDLLTGREHLYLYARLrgVPAEE-----------IEKV----ANWSIQSLGLslya 2064
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 393 DEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMA 472
Cdd:TIGR01257 2065 DRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMV 2144
|
..
gi 81855249 473 GG 474
Cdd:TIGR01257 2145 KG 2146
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
284-478 |
1.48e-10 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 62.58 E-value: 1.48e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 284 VLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGvPVLPNSphaaiVAGIGFAPEDRK-----HEALLlF--RSILDNaa 356
Cdd:PRK11144 26 ITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNG-RVLFDA-----EKGICLPPEKRRigyvfQDARL-FphYKVRGN-- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 357 LCVPDKTSSFGFFNRrkameIVSPLAAKmsikaPNLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAE 436
Cdd:PRK11144 97 LRYGMAKSMVAQFDK-----IVALLGIE-----PLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRE 166
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 81855249 437 IYRLIDELAAS-GIGIILISSEMPELIGLADRVLVMAGGRITA 478
Cdd:PRK11144 167 LLPYLERLAREiNIPILYVSHSLDEILRLADRVVVLEQGKVKA 209
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
12-224 |
1.61e-10 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 60.74 E-value: 1.61e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 12 ISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPD---TGTVRHGSTPivFGEPRDSHRAGIRVIHQ 88
Cdd:cd03233 13 TGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNvsvEGDIHYNGIP--YKEFAEKYPGEIIYVSE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 89 EPEIVPNLTVAENI-FVGELprlagvlldwrkleeQTDRVLatfgmqqdmrpRQLCGtlgpAQRQMIEIMRAIRAGGRLI 167
Cdd:cd03233 91 EDVHFPTLTVRETLdFALRC---------------KGNEFV-----------RGISG----GERKRVSIAEALVSRASVL 140
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 81855249 168 AFDEPTSSLTDDEARRLFSVVRRL--REKGTSIIYISHRLNEIIDLADRIVVLRDGRLV 224
Cdd:cd03233 141 CWDNSTRGLDSSTALEILKCIRTMadVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQI 199
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
19-224 |
1.89e-10 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 62.18 E-value: 1.89e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 19 VQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPI----VFGEPRDSH-----------RAGI 83
Cdd:PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIgdkkNNHELITNPyskkiknfkelRRRV 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 84 RVIHQEPEI-VPNLTVAENIFVGElprlagVLLDWRKLE--EQTDRVLATFGMQQ---DMRPRQLCGtlGPAQRQMIEIM 157
Cdd:PRK13631 119 SMVFQFPEYqLFKDTIEKDIMFGP------VALGVKKSEakKLAKFYLNKMGLDDsylERSPFGLSG--GQKRRVAIAGI 190
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 81855249 158 RAIRAggRLIAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLV 224
Cdd:PRK13631 191 LAIQP--EILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKIL 255
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
272-479 |
2.74e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 61.33 E-value: 2.74e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHAAI-----VAGIGFA-PEDRkheal 345
Cdd:PRK13646 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIrpvrkRIGMVFQfPESQ----- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 346 lLFRsilDNAalcvpDKTSSFGFFNRRKAMEIVSPLAAKMSIK---APNLDEQVS-KLSGGNQQKVVLARWLARQPMLLI 421
Cdd:PRK13646 98 -LFE---DTV-----EREIIFGPKNFKMNLDEVKNYAHRLLMDlgfSRDVMSQSPfQMSGGQMRKIAIVSILAMNPDIIV 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 81855249 422 LDEPTRGIDIGAKAEIYRLIDELAA-SGIGIILISSEMPELIGLADRVLVMAGGRITAE 479
Cdd:PRK13646 169 LDEPTAGLDPQSKRQVMRLLKSLQTdENKTIILVSHDMNEVARYADEVIVMKEGSIVSQ 227
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
268-476 |
3.23e-10 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 61.89 E-value: 3.23e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 268 TTDRVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVlpnsphaaivagIGFAPEDR------K 341
Cdd:PRK09452 26 GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDI------------THVPAENRhvntvfQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 342 HEALLLFRSILDNAAlcvpdktssFGF-FNRRKAMEIVSPL--AAKMSIKAPNLDEQVSKLSGGNQQKVVLARWLARQPM 418
Cdd:PRK09452 94 SYALFPHMTVFENVA---------FGLrMQKTPAAEITPRVmeALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPK 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 81855249 419 LLILDEPTRGIDIGAK----AEIYRLIDELaasGIGIILISSEMPELIGLADRVLVMAGGRI 476
Cdd:PRK09452 165 VLLLDESLSALDYKLRkqmqNELKALQRKL---GITFVFVTHDQEEALTMSDRIVVMRDGRI 223
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
21-225 |
3.36e-10 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 62.34 E-value: 3.36e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 21 ALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIvfgepRD----SHRAGIRVIHQEPEIVpNL 96
Cdd:PRK11176 358 ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDL-----RDytlaSLRNQVALVSQNVHLF-ND 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 97 TVAENIF-----------VGELPRLAGVLLDWRKLEEQTDRVLATFGMqqdmrprqlcgTLGPAQRQMIEIMRAIRAGGR 165
Cdd:PRK11176 432 TIANNIAyarteqysreqIEEAARMAYAMDFINKMDNGLDTVIGENGV-----------LLSGGQRQRIAIARALLRDSP 500
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 166 LIAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIyISHRLNeIIDLADRIVVLRDGRLVD 225
Cdd:PRK11176 501 ILILDEATSALDTESERAIQAALDELQKNRTSLV-IAHRLS-TIEKADEILVVEDGEIVE 558
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
270-485 |
3.43e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 60.88 E-value: 3.43e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 270 DRVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLP-NSPHAAIVAGIGFAPEDRKhealLLF 348
Cdd:PRK13642 21 NQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAeNVWNLRRKIGMVFQNPDNQ----FVG 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 349 RSILDNAAlcvpdktssFGFFNRRKAMEIVSPLAAKMSIKAPNLD---EQVSKLSGGNQQKVVLARWLARQPMLLILDEP 425
Cdd:PRK13642 97 ATVEDDVA---------FGMENQGIPREEMIKRVDEALLAVNMLDfktREPARLSGGQKQRVAVAGIIALRPEIIILDES 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81855249 426 TRGIDIGAKAEIYRLIDELAAS-GIGIILISSEMPELIGlADRVLVMAGGRITAELARPDI 485
Cdd:PRK13642 168 TSMLDPTGRQEIMRVIHEIKEKyQLTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSEL 227
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
7-102 |
3.47e-10 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 62.44 E-value: 3.47e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 7 FSLDGISKRFGV-VQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGstpivfgeprdshrAGIRV 85
Cdd:PRK11819 7 YTMNRVSKVVPPkKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPA--------------PGIKV 72
|
90
....*....|....*....
gi 81855249 86 --IHQEPEIVPNLTVAENI 102
Cdd:PRK11819 73 gyLPQEPQLDPEKTVRENV 91
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
20-224 |
3.53e-10 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 62.53 E-value: 3.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 20 QALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIvfgepRD----SHRAGIRVIHQEPeIVPN 95
Cdd:COG5265 372 PILKGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQDI-----RDvtqaSLRAAIGIVPQDT-VLFN 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 96 LTVAENIFVG----------ELPRLAGvLLDW-RKLEEQTDRVLATFGMqqdmrprQLCGtlGPAQRqmIEIMRAIRAGG 164
Cdd:COG5265 446 DTIAYNIAYGrpdaseeeveAAARAAQ-IHDFiESLPDGYDTRVGERGL-------KLSG--GEKQR--VAIARTLLKNP 513
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 165 RLIAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIyISHRLNEIIDlADRIVVLRDGRLV 224
Cdd:COG5265 514 PILIFDEATSALDSRTERAIQAALREVARGRTTLV-IAHRLSTIVD-ADEILVLEAGRIV 571
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
21-205 |
3.87e-10 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 61.99 E-value: 3.87e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 21 ALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPiVFGEPRDSHRAGIRVIHQEPEIVpNLTVAE 100
Cdd:TIGR02868 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVP-VSSLDQDEVRRRVSVCAQDAHLF-DTTVRE 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 101 NIFVG-------ELPR-LAGV-LLDW-RKLEEQTDRVLATFGmqqdmrprqlcGTLGPAQRQMIEIMRAIRAGGRLIAFD 170
Cdd:TIGR02868 428 NLRLArpdatdeELWAaLERVgLADWlRALPDGLDTVLGEGG-----------ARLSGGERQRLALARALLADAPILLLD 496
|
170 180 190
....*....|....*....|....*....|....*
gi 81855249 171 EPTSSLTDDEARRLFSVVRRLrEKGTSIIYISHRL 205
Cdd:TIGR02868 497 EPTEHLDAETADELLEDLLAA-LSGRTVVLITHHL 530
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
272-481 |
4.17e-10 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 61.29 E-value: 4.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLpnsphaaivagigfapeDRKHEALLLFRS- 350
Cdd:COG4608 34 VDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQDIT-----------------GLSGRELRPLRRr 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 351 ---ILDNaalcvpdktsSFGFFN-RRKAMEIVS-PLAAKMSIKAPNLDEQVSKL------------------SGGNQQKV 407
Cdd:COG4608 97 mqmVFQD----------PYASLNpRMTVGDIIAePLRIHGLASKAERRERVAELlelvglrpehadryphefSGGQRQRI 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 81855249 408 VLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDEL-AASGIGIILISSEMPELIGLADRVLVMAGGRItAELA 481
Cdd:COG4608 167 GIARALALNPKLIVCDEPVSALDVSIQAQVLNLLEDLqDELGLTYLFISHDLSVVRHISDRVAVMYLGKI-VEIA 240
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
23-230 |
4.72e-10 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 60.10 E-value: 4.72e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 23 DNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDT----GTVRHGSTPIVFGEPRDSHRAgirVIHQEPEIV--PNL 96
Cdd:PRK10418 20 HGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVrqtaGRVLLDGKPVAPCALRGRKIA---TIMQNPRSAfnPLH 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 97 TVAENIF-----VGELPRLAGVL--LDWRKLEEqTDRVLatfgmqqDMRPRQLCGtlGPAQRQMIEImrAIRAGGRLIAF 169
Cdd:PRK10418 97 TMHTHARetclaLGKPADDATLTaaLEAVGLEN-AARVL-------KLYPFEMSG--GMLQRMMIAL--ALLCEAPFIIA 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 81855249 170 DEPTSSLTDDEARRLFSVVRRL-REKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSPAA 230
Cdd:PRK10418 165 DEPTTDLDVVAQARILDLLESIvQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVE 226
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
272-476 |
4.95e-10 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 60.87 E-value: 4.95e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGydrrI----AGTIAMNGVpvlpnSPH---AAIVAGIGF--------- 335
Cdd:COG4586 38 VDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTG----IlvptSGEVRVLGY-----VPFkrrKEFARRIGVvfgqrsqlw 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 336 ---APEDrkheALLLFRSILDnaalcVPDKTssfgfFNRRKAMeivspLAAKMSIKaPNLDEQVSKLSGGNQQKVVLARW 412
Cdd:COG4586 109 wdlPAID----SFRLLKAIYR-----IPDAE-----YKKRLDE-----LVELLDLG-ELLDTPVRQLSLGQRMRCELAAA 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 81855249 413 LARQPMLLILDEPTRGIDIGAKAEIYRLIDEL-AASGIGIILISSEMPELIGLADRVLVMAGGRI 476
Cdd:COG4586 169 LLHRPKILFLDEPTIGLDVVSKEAIREFLKEYnRERGTTILLTSHDMDDIEALCDRVIVIDHGRI 233
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
22-225 |
5.06e-10 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 60.06 E-value: 5.06e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 22 LDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGE-----PRDSHRAGIRVIHQEPEIVPNL 96
Cdd:PRK14246 26 LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKdifqiDAIKLRKEVGMVFQQPNPFPHL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 97 TVAENIfvgELPRLAGVLLDWRKLEEQTDRVLATFGMQQDMRPR--QLCGTLGPAQRQMIEIMRAIRAGGRLIAFDEPTS 174
Cdd:PRK14246 106 SIYDNI---AYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRlnSPASQLSGGQQQRLTIARALALKPKVLLMDEPTS 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 81855249 175 SLTDDEARRLFSVVRRLREKgTSIIYISHRLNEIIDLADRIVVLRDGRLVD 225
Cdd:PRK14246 183 MIDIVNSQAIEKLITELKNE-IAIVIVSHNPQQVARVADYVAFLYNGELVE 232
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
381-478 |
5.15e-10 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 60.42 E-value: 5.15e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 381 LAAKMsIKAPNLDEQVS-----KLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEI----YRLIDElaaSGIGI 451
Cdd:PRK13634 124 KAREM-IELVGLPEELLarspfELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMmemfYKLHKE---KGLTT 199
|
90 100
....*....|....*....|....*..
gi 81855249 452 ILISSEMPELIGLADRVLVMAGGRITA 478
Cdd:PRK13634 200 VLVTHSMEDAARYADQIVVMHKGTVFL 226
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
24-243 |
5.37e-10 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 61.61 E-value: 5.37e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 24 NVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDSHRAGIRVIHQEPEI----------- 92
Cdd:PRK15439 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSsglyldaplaw 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 93 -VPNLTVAENIFVGELPRLAGVLldwrkleeqtDRVLATFGMQQDmRPRQLCGTLGPAQRQMIEIMRAIRAGGRLIAFDE 171
Cdd:PRK15439 361 nVCALTHNRRGFWIKPARENAVL----------ERYRRALNIKFN-HAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDE 429
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 81855249 172 PTSSLtDDEARR-LFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSPAAGASEQTIAKLMVG 243
Cdd:PRK15439 430 PTRGV-DVSARNdIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINVDTIMRLAFG 501
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
254-475 |
5.80e-10 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 59.02 E-value: 5.80e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 254 TWRSGEQLldvaglTTDRVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGvpvlpnsphaaivaGI 333
Cdd:cd03250 9 TWDSGEQE------TSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG--------------SI 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 334 GFAPEdrkhEALLLFRSILDNAAlcvpdktssFG-FFNRRKAMEIVSPLAAKMSIKA-PNLD-----EQVSKLSGGNQQK 406
Cdd:cd03250 69 AYVSQ----EPWIQNGTIRENIL---------FGkPFDEERYEKVIKACALEPDLEIlPDGDlteigEKGINLSGGQKQR 135
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 407 VVLARWLARQPMLLILDEPTRGIDIGAKAEIY-RLIDELAASGIGIILISSEMpELIGLADRVLVMAGGR 475
Cdd:cd03250 136 ISLARAVYSDADIYLLDDPLSAVDAHVGRHIFeNCILGLLLNNKTRILVTHQL-QLLPHADQIVVLDNGR 204
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
30-473 |
5.91e-10 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 61.75 E-value: 5.91e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 30 RPGEVLALVGENGAGKSTMMRILEGVSGPDTGtvRHGSTP----IV-----------FGEPRDShraGIRVIH--QEPEI 92
Cdd:PRK13409 97 KEGKVTGILGPNGIGKTTAVKILSGELIPNLG--DYEEEPswdeVLkrfrgtelqnyFKKLYNG---EIKVVHkpQYVDL 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 93 VPNLTVAEnifVGELprLAGVllDWR-KLEEQTDRvlatFGMQQ--DMRPRQLCGtlGPAQRqmIEIMRAIRAGGRLIAF 169
Cdd:PRK13409 172 IPKVFKGK---VREL--LKKV--DERgKLDEVVER----LGLENilDRDISELSG--GELQR--VAIAAALLRDADFYFF 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 170 DEPTSSLtdDEARRLfSVVRRLRE--KGTSIIYISHRLnEIID-LADRIVVLRD-----GRLvddSPAAGASeqtiaklm 241
Cdd:PRK13409 237 DEPTSYL--DIRQRL-NVARLIRElaEGKYVLVVEHDL-AVLDyLADNVHIAYGepgayGVV---SKPKGVR-------- 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 242 VGRN-------------IDD---LFTRETWR---SGEQLLDVAGLTTDrVNDVSLRV-----RRGEVLGIAGLMGAGRSE 297
Cdd:PRK13409 302 VGINeylkgylpeenmrIRPepiEFEERPPRdesERETLVEYPDLTKK-LGDFSLEVeggeiYEGEVIGIVGPNGIGKTT 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 298 LAKAIVGydrriagtiamngvpVL-PNSPHAAIVAGIGFAPEDRKHEALLLFRSILDNAAlcvPDKTSSFgFFNrrkamE 376
Cdd:PRK13409 381 FAKLLAG---------------VLkPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSIT---DDLGSSY-YKS-----E 436
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 377 IVSPLAAKmsikaPNLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDI-----GAKAeIYRLIDELAASGIGI 451
Cdd:PRK13409 437 IIKPLQLE-----RLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVeqrlaVAKA-IRRIAEEREATALVV 510
|
490 500
....*....|....*....|....*
gi 81855249 452 ---ILisseMPELIglADRVLVMAG 473
Cdd:PRK13409 511 dhdIY----MIDYI--SDRLMVFEG 529
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
266-475 |
5.99e-10 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 61.80 E-value: 5.99e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 266 GLTTDRVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVpVLPNSPHAAIVAGIGFAPEDRK---H 342
Cdd:PRK10261 26 QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKM-LLRRRSRQVIELSEQSAAQMRHvrgA 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 343 EALLLFRSILD--NAALCVPDKTSSFGFFNRRKAMEIVSPLAAKM--SIKAPNLDEQVSK----LSGGNQQKVVLARWLA 414
Cdd:PRK10261 105 DMAMIFQEPMTslNPVFTVGEQIAESIRLHQGASREEAMVEAKRMldQVRIPEAQTILSRyphqLSGGMRQRVMIAMALS 184
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 81855249 415 RQPMLLILDEPTRGIDIGAKAEIYRLIDELAAS-GIGIILISSEMPELIGLADRVLVMAGGR 475
Cdd:PRK10261 185 CRPAVLIADEPTTALDVTIQAQILQLIKVLQKEmSMGVIFITHDMGVVAEIADRVLVMYQGE 246
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
19-224 |
6.11e-10 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 59.21 E-value: 6.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 19 VQALDNVSIAFRPGEVLALVGENGAGKSTMmriLEGVSGPDTGTVRHGSTPIVFGEPRDSHRAGIRVIH--QEPEIVPNL 96
Cdd:cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTL---LDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYvrQDDILLPGL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 97 TVAENifvgeLPRLAGVLLDWRKLEEQTDRVLATFGMQQ-------DMRPRQLCGtlGPAQRQMIEImRAIRAGGRLIaF 169
Cdd:cd03234 97 TVRET-----LTYTAILRLPRKSSDAIRKKRVEDVLLRDlaltrigGNLVKGISG--GERRRVSIAV-QLLWDPKVLI-L 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 81855249 170 DEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHR-LNEIIDLADRIVVLRDGRLV 224
Cdd:cd03234 168 DEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQpRSDLFRLFDRILLLSSGEIV 223
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
34-224 |
6.40e-10 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 60.66 E-value: 6.40e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 34 VLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEPRDS---HRAGIRVIHQEPEIVPNLTVAENIFVGelprL 110
Cdd:PRK11144 26 ITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGIClppEKRRIGYVFQDARLFPHYKVRGNLRYG----M 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 111 AgvlldwRKLEEQTDRVLATFGMQQ--DMRPRQLCGtlGPAQRqmIEIMRAIRAGGRLIAFDEPTSSLTDDEARRLFSVV 188
Cdd:PRK11144 102 A------KSMVAQFDKIVALLGIEPllDRYPGSLSG--GEKQR--VAIGRALLTAPELLLMDEPLASLDLPRKRELLPYL 171
|
170 180 190
....*....|....*....|....*....|....*..
gi 81855249 189 RRL-REKGTSIIYISHRLNEIIDLADRIVVLRDGRLV 224
Cdd:PRK11144 172 ERLaREINIPILYVSHSLDEILRLADRVVVLEQGKVK 208
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
381-476 |
8.20e-10 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 60.10 E-value: 8.20e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 381 LAAKMsIKAPNLDEQVSK-----LSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILIS 455
Cdd:PRK13651 144 RAAKY-IELVGLDESYLQrspfeLSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVT 222
|
90 100
....*....|....*....|.
gi 81855249 456 SEMPELIGLADRVLVMAGGRI 476
Cdd:PRK13651 223 HDLDNVLEWTKRTIFFKDGKI 243
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
20-224 |
9.26e-10 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 59.48 E-value: 9.26e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 20 QALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGstpivfGEPRDSHRAGIRVIHQEPEIV---PN- 95
Cdd:PRK13636 20 HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFD------GKPIDYSRKGLMKLRESVGMVfqdPDn 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 96 ----LTVAENIFVGELprlaGVLLDWRKLEEQTDRVLATFGMQQDMRPRQLCGTLGPAQRQMIEIMRAIRAggRLIAFDE 171
Cdd:PRK13636 94 qlfsASVYQDVSFGAV----NLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEP--KVLVLDE 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 81855249 172 PTSSLTDDEARRLFSVVRRL-REKGTSIIYISHRLNEIIDLADRIVVLRDGRLV 224
Cdd:PRK13636 168 PTAGLDPMGVSEIMKLLVEMqKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVI 221
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
22-221 |
1.05e-09 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 58.50 E-value: 1.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 22 LDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGS---TPIVFGEPRDSHRAGIRVIHQEPEIVpNLTV 98
Cdd:cd03290 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNkneSEPSFEATRSRNRYSVAYAAQKPWLL-NATV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 99 AENIFVGE---LPRLAGVlLDWRKLEEQTDrvLATFGMQQDMRPRQLcgTLGPAQRQMIEIMRAIRAGGRLIAFDEPTSS 175
Cdd:cd03290 96 EENITFGSpfnKQRYKAV-TDACSLQPDID--LLPFGDQTEIGERGI--NLSGGQRQRICVARALYQNTNIVFLDDPFSA 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 81855249 176 LTDDEARRLFS--VVRRLREKGTSIIYISHRLNEIIDlADRIVVLRDG 221
Cdd:cd03290 171 LDIHLSDHLMQegILKFLQDDKRTLVLVTHKLQYLPH-ADWIIAMKDG 217
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
20-224 |
1.18e-09 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 58.02 E-value: 1.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 20 QALDNVSIAFRPGEVLALVGENGAGKSTMMRILEG--VSGPDTGTVRhgstpiVFGEPRD-SHRAGIRVIHQEPEIVPNL 96
Cdd:cd03232 21 QLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGrkTAGVITGEIL------INGRPLDkNFQRSTGYVEQQDVHSPNL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 97 TVAENIfvgelpRLAGVLLDwrkleeqtdrvlatfgmqqdmrprqlcgtLGPAQRQMIEIMRAIRAGGRLIAFDEPTSSL 176
Cdd:cd03232 95 TVREAL------RFSALLRG-----------------------------LSVEQRKRLTIGVELAAKPSILFLDEPTSGL 139
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 81855249 177 TDDEARRLFSVVRRLREKGTSIIYISHRLNE-IIDLADRIVVL-RDGRLV 224
Cdd:cd03232 140 DSQAAYNIVRFLKKLADSGQAILCTIHQPSAsIFEKFDRLLLLkRGGKTV 189
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
391-473 |
1.27e-09 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 57.16 E-value: 1.27e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 391 NLDEQV-----SKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELaasgiGIILIS-SEMPELIGL 464
Cdd:cd03223 79 TLREQLiypwdDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL-----GITVISvGHRPSLWKF 153
|
....*....
gi 81855249 465 ADRVLVMAG 473
Cdd:cd03223 154 HDRVLDLDG 162
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
273-476 |
2.52e-09 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 57.63 E-value: 2.52e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 273 NDVSLRVRRGEVLGIAGLMGAGRSELAKAIVG-YDRRiAGTIAMNGVP---VLPNSPHAAIvagiGFAPEDrkheaLLLF 348
Cdd:cd03253 18 KDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRfYDVS-SGSILIDGQDireVTLDSLRRAI----GVVPQD-----TVLF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 349 R-SILDNAALCVPDKTSSFGFFNRRKAM--EIVSPLAAKMSIKapnLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEP 425
Cdd:cd03253 88 NdTIGYNIRYGRPDATDEEVIEAAKAAQihDKIMRFPDGYDTI---VGERGLKLSGGEKQRVAIARAILKNPPILLLDEA 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 81855249 426 TRGIDIGAKAEIYRLIDELAAsGIGIILISSEMPELIGlADRVLVMAGGRI 476
Cdd:cd03253 165 TSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVN-ADKIIVLKDGRI 213
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
8-296 |
2.64e-09 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 59.75 E-value: 2.64e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 8 SLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRhgstpiVFGEP-RDS-HRAGIRv 85
Cdd:NF033858 3 RLEGVSHRYGKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAGARKIQQGRVE------VLGGDmADArHRRAVC- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 86 ihqePEIV-----------PNLTVAENI-FVGelpRLAGvlLDWRKLEEQTDRVLATFGMQ--QDmRP--------RQ-- 141
Cdd:NF033858 76 ----PRIAympqglgknlyPTLSVFENLdFFG---RLFG--QDAAERRRRIDELLRATGLApfAD-RPagklsggmKQkl 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 142 -LCGTLgpaqrqmieimraIRAGGRLIaFDEPTSSLtDDEARRLF-SVVRRLREK--GTSII----YishrlneiIDLAD 213
Cdd:NF033858 146 gLCCAL-------------IHDPDLLI-LDEPTTGV-DPLSRRQFwELIDRIRAErpGMSVLvataY--------MEEAE 202
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 214 R---IVVLRDGRLVDDSPAAGASEQTIAKlmvgrNIDDLFTR---ETWRSGEQLLDVA---------------GLTTdR- 271
Cdd:NF033858 203 RfdwLVAMDAGRVLATGTPAELLARTGAD-----TLEAAFIAllpEEKRRGHQPVVIPprpaddddepaiearGLTM-Rf 276
|
330 340 350
....*....|....*....|....*....|
gi 81855249 272 -----VNDVSLRVRRGEVLGIAGLMGAGRS 296
Cdd:NF033858 277 gdftaVDHVSFRIRRGEIFGFLGSNGCGKS 306
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
22-204 |
3.15e-09 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 56.01 E-value: 3.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 22 LDNVSIAFRPGEVLALVGENGAGKSTMMRILEGV--SGpdTGTV-RHGSTPIVFgeprdshragirvIHQEPeIVPNLTV 98
Cdd:cd03223 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLwpWG--SGRIgMPEGEDLLF-------------LPQRP-YLPLGTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 99 AENIFvgeLPrlagvlldWRKleeqtdrvlatfgmqqdmrprqlcgTLGPAQRQMIEIMRAIRAGGRLIAFDEPTSSLTD 178
Cdd:cd03223 81 REQLI---YP--------WDD-------------------------VLSGGEQQRLAFARLLLHKPKFVFLDEATSALDE 124
|
170 180
....*....|....*....|....*.
gi 81855249 179 DEARRLFSVvrrLREKGTSIIYISHR 204
Cdd:cd03223 125 ESEDRLYQL---LKELGITVISVGHR 147
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
20-224 |
3.49e-09 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 59.07 E-value: 3.49e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 20 QALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPI-VFGEprDSHRAGIRVIHQEPEIVpNLTV 98
Cdd:PRK11160 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIaDYSE--AALRQAISVVSQRVHLF-SATL 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 99 AENIfvgelpRLAGVLLDwrklEEQTDRVLATFGMQ---QDMRP---------RQLCGtlgpAQRQMIEIMRAIRAGGRL 166
Cdd:PRK11160 431 RDNL------LLAAPNAS----DEALIEVLQQVGLEkllEDDKGlnawlgeggRQLSG----GEQRRLGIARALLHDAPL 496
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 167 IAFDEPTSSLTDDEARRLFSVvrrLRE--KGTSIIYISHRLNEiIDLADRIVVLRDGRLV 224
Cdd:PRK11160 497 LLLDEPTEGLDAETERQILEL---LAEhaQNKTVLMITHRLTG-LEQFDRICVMDNGQII 552
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
262-459 |
3.52e-09 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 56.73 E-value: 3.52e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 262 LDVAGLTTDR-----VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSP-HAAIVAGIGF 335
Cdd:cd03231 1 LEADELTCERdgralFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDsIARGLLYLGH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 336 APedrkheALLLFRSILDNaalcvpdktssFGFFNRRKAMEIVSPLAAKMSIKAPNlDEQVSKLSGGNQQKVVLARWLAR 415
Cdd:cd03231 81 AP------GIKTTLSVLEN-----------LRFWHADHSDEQVEEALARVGLNGFE-DRPVAQLSAGQQRRVALARLLLS 142
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 81855249 416 QPMLLILDEPTRGIDIGAKAEIYRLIDELAASGiGIILISSEMP 459
Cdd:cd03231 143 GRPLWILDEPTTALDKAGVARFAEAMAGHCARG-GMVVLTTHQD 185
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
261-476 |
3.86e-09 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 57.24 E-value: 3.86e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 261 LLDVAGLTT---DRV--NDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTI--AMNGVPVLPnsphaaiVAGI 333
Cdd:PRK11701 6 LLSVRGLTKlygPRKgcRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVhyRMRDGQLRD-------LYAL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 334 GFApeDRKHeallLFRSildnaalcvpdktsSFGFF--NRRKAME--------IVSPLAA------------------KM 385
Cdd:PRK11701 79 SEA--ERRR----LLRT--------------EWGFVhqHPRDGLRmqvsaggnIGERLMAvgarhygdiratagdwleRV 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 386 SIKAPNLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAAS-GIGIILISSEMPELIGL 464
Cdd:PRK11701 139 EIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRElGLAVVIVTHDLAVARLL 218
|
250
....*....|..
gi 81855249 465 ADRVLVMAGGRI 476
Cdd:PRK11701 219 AHRLLVMKQGRV 230
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
272-475 |
4.87e-09 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 57.67 E-value: 4.87e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHAAivagigfapEDRKHEALLLFRSi 351
Cdd:PRK11308 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQ---------KLLRQKIQIVFQN- 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 352 ldnaalcvpdktsSFGFFNRRKAMEIV--SPLAAKMSIKAPNLDEQVSKL------------------SGGNQQKVVLAR 411
Cdd:PRK11308 101 -------------PYGSLNPRKKVGQIleEPLLINTSLSAAERREKALAMmakvglrpehydryphmfSGGQRQRIAIAR 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 81855249 412 WLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAAS-GIGIILISSEMPELIGLADRVLVMAGGR 475
Cdd:PRK11308 168 ALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQElGLSYVFISHDLSVVEHIADEVMVMYLGR 232
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
386-466 |
9.51e-09 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 56.20 E-value: 9.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 386 SIKAPNLDEQVS--------KLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELA-ASGIGIILISS 456
Cdd:PRK14258 130 ALKDADLWDEIKhkihksalDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRlRSELTMVIVSH 209
|
90
....*....|
gi 81855249 457 EMPELIGLAD 466
Cdd:PRK14258 210 NLHQVSRLSD 219
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
399-479 |
9.87e-09 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 56.35 E-value: 9.87e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 399 LSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAAS-GIGIILISSEMPELIGLADRVLVMAGGRIT 477
Cdd:PRK13652 138 LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETyGMTVIFSTHQLDLVPEMADYIYVMDKGRIV 217
|
..
gi 81855249 478 AE 479
Cdd:PRK13652 218 AY 219
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
22-222 |
1.07e-08 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 57.58 E-value: 1.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 22 LDNVSIAFRPGEVLALVGENGAGKSTMMRILEG-VSGPD-TGTV----RHGSTPIVfgeprdsHRAGIrvIHQEPEIVPN 95
Cdd:PLN03211 84 LNGVTGMASPGEILAVLGPSGSGKSTLLNALAGrIQGNNfTGTIlannRKPTKQIL-------KRTGF--VTQDDILYPH 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 96 LTVAENIFVGELPRLAGVLLDWRKLeEQTDRVLATFGMQQdmrprqlCGT----------LGPAQRQMIEIMRAIRAGGR 165
Cdd:PLN03211 155 LTVRETLVFCSLLRLPKSLTKQEKI-LVAESVISELGLTK-------CENtiignsfirgISGGERKRVSIAHEMLINPS 226
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 81855249 166 LIAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHR-LNEIIDLADRIVVLRDGR 222
Cdd:PLN03211 227 LLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQpSSRVYQMFDSVLVLSEGR 284
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
19-227 |
1.08e-08 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 56.25 E-value: 1.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 19 VQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVfGEPRDSHRAGIRVIHQEPE-IVPNLT 97
Cdd:PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLT-AENVWNLRRKIGMVFQNPDnQFVGAT 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 98 VAENIFVGE----LPRlagvlldwRKLEEQTDRVLATFGMqQDMRPRQlCGTLGPAQRQMIEIMRAIRAGGRLIAFDEPT 173
Cdd:PRK13642 99 VEDDVAFGMenqgIPR--------EEMIKRVDEALLAVNM-LDFKTRE-PARLSGGQKQRVAVAGIIALRPEIIILDEST 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 81855249 174 SSLTDDEARRLFSVVRRLREK-GTSIIYISHRLNEIIDlADRIVVLRDGRLVDDS 227
Cdd:PRK13642 169 SMLDPTGRQEIMRVIHEIKEKyQLTVLSITHDLDEAAS-SDRILVMKAGEIIKEA 222
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
392-485 |
1.14e-08 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 56.07 E-value: 1.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 392 LDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASgIGIILISSEMPELIGLADRVLVM 471
Cdd:PRK14247 140 LDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKD-MTIVLVTHFPQQAARISDYVAFL 218
|
90
....*....|....
gi 81855249 472 AGGRITAELARPDI 485
Cdd:PRK14247 219 YKGQIVEWGPTREV 232
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
272-483 |
1.26e-08 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 55.19 E-value: 1.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVgydrRIA----GTIAMNGVPVLPNSPHAaIVAGIGFAPEDrkheALLL 347
Cdd:cd03244 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALF----RLVelssGSILIDGVDISKIGLHD-LRSRISIIPQD----PVLF 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 348 FRSILDNAalcvpDKTSSFGFFNRRKAMEIVSpLAAKMSIKAPNLDEQV----SKLSGGNQQKVVLARWLARQPMLLILD 423
Cdd:cd03244 91 SGTIRSNL-----DPFGEYSDEELWQALERVG-LKEFVESLPGGLDTVVeeggENLSVGQRQLLCLARALLRKSKILVLD 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 424 EPTRGIDIGAKAEIYRLIDElAASGIGIILISSEMPELIGlADRVLVMAGGRItAELARP 483
Cdd:cd03244 165 EATASVDPETDALIQKTIRE-AFKDCTVLTIAHRLDTIID-SDRILVLDKGRV-VEFDSP 221
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
399-492 |
1.33e-08 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 55.90 E-value: 1.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 399 LSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRITA 478
Cdd:PRK13647 139 LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLA 218
|
90
....*....|....*....
gi 81855249 479 E-----LARPDIDEATILK 492
Cdd:PRK13647 219 EgdkslLTDEDIVEQAGLR 237
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
19-216 |
1.62e-08 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 54.25 E-value: 1.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 19 VQALDNVSIAFRPGEVLALVGENGAGKSTMmrILEGvsGPDTGTVRHGSTPIVFGEprdshragirvihqepeivpNLTv 98
Cdd:cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTL--VNEG--LYASGKARLISFLPKFSR--------------------NKL- 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 99 aenIFVGELPRLAGVLLDWRKLeeqtDRVLATFgmqqdmrprqlcgTLGPAQRQMIEIMRAIRAGGRLIAFDEPTSSLTD 178
Cdd:cd03238 63 ---IFIDQLQFLIDVGLGYLTL----GQKLSTL-------------SGGELQRVKLASELFSEPPGTLFILDEPSTGLHQ 122
|
170 180 190
....*....|....*....|....*....|....*...
gi 81855249 179 DEARRLFSVVRRLREKGTSIIYISHRLnEIIDLADRIV 216
Cdd:cd03238 123 QDINQLLEVIKGLIDLGNTVILIEHNL-DVLSSADWII 159
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
11-217 |
2.03e-08 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 54.58 E-value: 2.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 11 GISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEG--VSGPDTGTVRhgstpivfgeprdshragirviHQ 88
Cdd:COG2401 35 GVELRVVERYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGalKGTPVAGCVD----------------------VP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 89 EPEIVPNLTVAENIfvgelPRLAGVLldwrkleeQTDRVLATFGMQQDMRPRQLCGTLGPAQRQMIEIMRAIRAGGRLIA 168
Cdd:COG2401 93 DNQFGREASLIDAI-----GRKGDFK--------DAVELLNAVGLSDAVLWLRRFKELSTGQKFRFRLALLLAERPKLLV 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 81855249 169 FDEPTSSLTDDEARRLFSVVRRL-REKGTSIIYISHRLNEIIDLADRIVV 217
Cdd:COG2401 160 IDEFCSHLDRQTAKRVARNLQKLaRRAGITLVVATHHYDVIDDLQPDLLI 209
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
17-222 |
2.23e-08 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 55.89 E-value: 2.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 17 GVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGV---SGPDTGTVRHGSTPIVFGEPRDSHR---AGIRVIHQEP 90
Cdd:PRK09473 27 GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLlaaNGRIGGSATFNGREILNLPEKELNKlraEQISMIFQDP 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 91 --EIVPNLTVAEnifvgelpRLAGVLLDWRKLE-----EQTDRVLATFGMQQ-----DMRPRQLCGtlGPAQRQMIEImr 158
Cdd:PRK09473 107 mtSLNPYMRVGE--------QLMEVLMLHKGMSkaeafEESVRMLDAVKMPEarkrmKMYPHEFSG--GMRQRVMIAM-- 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 81855249 159 AIRAGGRLIAFDEPTSSLTDDEARRLFSVVRRL-REKGTSIIYISHRLNEIIDLADRIVVLRDGR 222
Cdd:PRK09473 175 ALLCRPKLLIADEPTTALDVTVQAQIMTLLNELkREFNTAIIMITHDLGVVAGICDKVLVMYAGR 239
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
272-476 |
2.46e-08 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 56.26 E-value: 2.46e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPvLPNSPHAAIVAGIGFAPEDrkheaLLLFR-S 350
Cdd:TIGR02203 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHD-LADYTLASLRRQVALVSQD-----VVLFNdT 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 351 ILDNAALCVPDKTSSfgffnrrkaMEIVSPLAAKMSI----KAPN-LDEQV----SKLSGGNQQKVVLARWLARQPMLLI 421
Cdd:TIGR02203 422 IANNIAYGRTEQADR---------AEIERALAAAYAQdfvdKLPLgLDTPIgengVLLSGGQRQRLAIARALLKDAPILI 492
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 81855249 422 LDEPTRGIDIGAKAEIYRLIDELAASGIGIIL---ISSempelIGLADRVLVMAGGRI 476
Cdd:TIGR02203 493 LDEATSALDNESERLVQAALERLMQGRTTLVIahrLST-----IEKADRIVVMDDGRI 545
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
20-241 |
2.63e-08 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 56.34 E-value: 2.63e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 20 QALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVS-GPD-TGTVRHGSTPIVFGEPRDSHRAGIR-VIHQEPEIVPNL 96
Cdd:NF040905 274 KVVDDVSLNVRRGEIVGIAGLMGAGRTELAMSVFGRSyGRNiSGTVFKDGKEVDVSTVSDAIDAGLAyVTEDRKGYGLNL 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 97 --TVAENIFVGELPRLA--GVLldwrklEEQTDRVLATfGMQQDMRPR-----QLCGTLGPAQRQMIEIMRAIRAGGRLI 167
Cdd:NF040905 354 idDIKRNITLANLGKVSrrGVI------DENEEIKVAE-EYRKKMNIKtpsvfQKVGNLSGGNQQKVVLSKWLFTDPDVL 426
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 81855249 168 AFDEPTSSLtDDEAR-RLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSPAAGASEQTIAKLM 241
Cdd:NF040905 427 ILDEPTRGI-DVGAKyEIYTIINELAAEGKGVIVISSELPELLGMCDRIYVMNEGRITGELPREEASQERIMRLI 500
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
272-476 |
3.18e-08 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 56.12 E-value: 3.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELakaiVGYDRRI----AGTIAMNGV---PVLPNSPHAAIvaGIGFapedrkHEA 344
Cdd:PRK13657 351 VEDVSFEAKPGQTVAIVGPTGAGKSTL----INLLQRVfdpqSGRILIDGTdirTVTRASLRRNI--AVVF------QDA 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 345 LLLFRSILDNAALCVPDKTSSfgffNRRKAMEIVSPL---AAKMSIKAPNLDEQVSKLSGGNQQKVVLARWLARQPMLLI 421
Cdd:PRK13657 419 GLFNRSIEDNIRVGRPDATDE----EMRAAAERAQAHdfiERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILI 494
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 81855249 422 LDEPTRGIDIGAKAEIYRLIDELaASGIGIILISSEMpELIGLADRVLVMAGGRI 476
Cdd:PRK13657 495 LDEATSALDVETEAKVKAALDEL-MKGRTTFIIAHRL-STVRNADRILVFDNGRV 547
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
25-232 |
3.32e-08 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 55.96 E-value: 3.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 25 VSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVfGEPRDSHRAGIRVIHQEPEIVPNLTVAENifv 104
Cdd:COG4615 351 IDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGEILLDGQPVT-ADNREAYRQLFSAVFSDFHLFDRLLGLDG--- 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 105 GELPRLAGVLLDWRKLEEQT---DRVLATfgmqqdmrprqlcgtlgpaqrqmieimRAIRAGGR-----LIA-------- 168
Cdd:COG4615 427 EADPARARELLERLELDHKVsveDGRFST---------------------------TDLSQGQRkrlalLVAlledrpil 479
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 81855249 169 -FDE------PtssltddEARRLF--SVVRRLREKGTSIIYISH--RLneiIDLADRIVVLRDGRLVDDSPAAGA 232
Cdd:COG4615 480 vFDEwaadqdP-------EFRRVFytELLPELKARGKTVIAISHddRY---FDLADRVLKMDYGKLVELTGPAAL 544
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
252-503 |
3.38e-08 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 56.27 E-value: 3.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 252 RETWRSGEQLLDVaglttdrVNDVSLRVRRGEVLGIAGLMGAGRSELAKaIVGY-DRRIAGT--IAMNGVPVLPNSPHAA 328
Cdd:PRK10535 11 RRSYPSGEEQVEV-------LKGISLDIYAGEMVAIVGASGSGKSTLMN-ILGClDKPTSGTyrVAGQDVATLDADALAQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 329 IV-AGIGFAPEdRKHeaLLLFRSILDNAAlcVPDKTSSFGFFNRR-KAMEIVSPLAAkmsikAPNLDEQVSKLSGGNQQK 406
Cdd:PRK10535 83 LRrEHFGFIFQ-RYH--LLSHLTAAQNVE--VPAVYAGLERKQRLlRAQELLQRLGL-----EDRVEYQPSQLSGGQQQR 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 407 VVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEmPELIGLADRVLVMAGGRITAElaRPDID 486
Cdd:PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHD-PQVAAQAERVIEIRDGEIVRN--PPAQE 229
|
250
....*....|....*..
gi 81855249 487 EATILKHAMPQSASSPG 503
Cdd:PRK10535 230 KVNVAGGTEPVVNTASG 246
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
10-230 |
3.40e-08 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 56.29 E-value: 3.40e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 10 DGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRhgstpiVFGEPRDSH----RAgiRV 85
Cdd:NF033858 270 RGLTMRFGDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAW------LFGQPVDAGdiatRR--RV 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 86 --------IHQEpeivpnLTVAENIfvgEL-PRLAGvlLDWRKLEEQTDRVLATFGMQ--QDMRPRQLcgTLGPAQR--- 151
Cdd:NF033858 342 gymsqafsLYGE------LTVRQNL---ELhARLFH--LPAAEIAARVAEMLERFDLAdvADALPDSL--PLGIRQRlsl 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 152 --QMI---EImrairaggrLIaFDEPTSSLtDDEARRLF--SVVRRLREKGTSiIYIS-HRLNEiidlA---DRIVVLRD 220
Cdd:NF033858 409 avAVIhkpEL---------LI-LDEPTSGV-DPVARDMFwrLLIELSREDGVT-IFIStHFMNE----AercDRISLMHA 472
|
250
....*....|.
gi 81855249 221 GR-LVDDSPAA 230
Cdd:NF033858 473 GRvLASDTPAA 483
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
275-459 |
3.76e-08 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 53.52 E-value: 3.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 275 VSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPV--LPNSPHAAIvAGIGFAP----EDRKHEALLLF 348
Cdd:TIGR01189 19 LSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLaeQRDEPHENI-LYLGHLPglkpELSALENLHFW 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 349 RSILDNAALCVPDktssfgffnrrkAMEIVSPLAAKmsikapnlDEQVSKLSGGNQQKVVLAR-WLARQPmLLILDEPTR 427
Cdd:TIGR01189 98 AAIHGGAQRTIED------------ALAAVGLTGFE--------DLPAAQLSAGQQRRLALARlWLSRRP-LWILDEPTT 156
|
170 180 190
....*....|....*....|....*....|..
gi 81855249 428 GIDIGAKAEIYRLIDELAASGiGIILISSEMP 459
Cdd:TIGR01189 157 ALDKAGVALLAGLLRAHLARG-GIVLLTTHQD 187
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
273-455 |
4.11e-08 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 52.07 E-value: 4.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 273 NDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMngvpvlpnsphaaivagigfapedrkhealllfrsil 352
Cdd:cd03221 17 KDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW------------------------------------- 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 353 dnaalcvpDKTSSFGFFnrrkameivsplaakmsikapnldeqvSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIG 432
Cdd:cd03221 60 --------GSTVKIGYF---------------------------EQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLE 104
|
170 180
....*....|....*....|...
gi 81855249 433 AKAEiyrLIDELAASGIGIILIS 455
Cdd:cd03221 105 SIEA---LEEALKEYPGTVILVS 124
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
34-229 |
4.12e-08 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 54.46 E-value: 4.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 34 VLALVGENGAGKSTMMRILEGV-----SGPDTGTVRhgstpiVFGEPRDSH-------RAGIRVIHQEPEIVPNLTVAEN 101
Cdd:PRK14267 32 VFALMGPSGCGKSTLLRTFNRLlelneEARVEGEVR------LFGRNIYSPdvdpievRREVGMVFQYPNPFPHLTIYDN 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 102 IFVGelPRLAGVLLDWRKLEEQTDRVLATFGMQQDMRPR--QLCGTLGPAQRQMIEIMRAIRAGGRLIAFDEPTSSLTDD 179
Cdd:PRK14267 106 VAIG--VKLNGLVKSKKELDERVEWALKKAALWDEVKDRlnDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPV 183
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 81855249 180 EARRLFSVVRRLREKGTsIIYISHRLNEIIDLADRIVVLRDGRLVDDSPA 229
Cdd:PRK14267 184 GTAKIEELLFELKKEYT-IVLVTHSPAQAARVSDYVAFLYLGKLIEVGPT 232
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
22-448 |
4.23e-08 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 55.41 E-value: 4.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 22 LDNVSIafRPGEVLALVGENGAGKSTMMRILegvsgpdtgtvrHGSTPIVFGEPRDSHRAGIRV-IHQEPEIVPN----- 95
Cdd:PRK10938 21 LPSLTL--NAGDSWAFVGANGSGKSALARAL------------AGELPLLSGERQSQFSHITRLsFEQLQKLVSDewqrn 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 96 ----LTVAENIFvGELprLAGVLLDWRKLEEQTDRVLATFGMQQ--DMRPRQLcgTLGPAQRQMIeiMRAIRAGGRLIAF 169
Cdd:PRK10938 87 ntdmLSPGEDDT-GRT--TAEIIQDEVKDPARCEQLAQQFGITAllDRRFKYL--STGETRKTLL--CQALMSEPDLLIL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 170 DEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSP-AAGASEQTIAKLMVGRNI-- 246
Cdd:PRK10938 160 DEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGErEEILQQALVAQLAHSEQLeg 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 247 ------DDLFTRETWRSGE---QLLDVAGLTTDRV--NDVSLRVRRGEVLGIAGLMGAGRSELAKAIVG-----YD---- 306
Cdd:PRK10938 240 vqlpepDEPSARHALPANEpriVLNNGVVSYNDRPilHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGdhpqgYSndlt 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 307 ----RRIAG-TI--AMNGVPVLPNSPH----------AAIVAGigfapedrkheallLFRSILDNAAlcVPDKtssfgff 369
Cdd:PRK10938 320 lfgrRRGSGeTIwdIKKHIGYVSSSLHldyrvstsvrNVILSG--------------FFDSIGIYQA--VSDR------- 376
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 370 NRRKAMEIVSPLaakmsikapNLDEQVSK-----LSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDEL 444
Cdd:PRK10938 377 QQKLAQQWLDIL---------GIDKRTADapfhsLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVL 447
|
....
gi 81855249 445 AASG 448
Cdd:PRK10938 448 ISEG 451
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
272-476 |
4.53e-08 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 54.63 E-value: 4.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYdrriagTIAMNGVPVLPNSphaAIVAGIGFAPE--DRKHEALLLFR 349
Cdd:PRK13645 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGL------IISETGQTIVGDY---AIPANLKKIKEvkRLRKEIGLVFQ 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 350 SILDNAALCVPDKTSSFGFF----NRRKAMEIVSPLAAKMSIKAPNLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEP 425
Cdd:PRK13645 98 FPEYQLFQETIEKDIAFGPVnlgeNKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEP 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 81855249 426 TRGIDIGAKAEIYRLIDELAAS-GIGIILISSEMPELIGLADRVLVMAGGRI 476
Cdd:PRK13645 178 TGGLDPKGEEDFINLFERLNKEyKKRIIMVTHNMDQVLRIADEVIVMHEGKV 229
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
23-101 |
4.67e-08 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 53.27 E-value: 4.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 23 DNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIvfGEPRDS---------HRAGIRvihqepeiv 93
Cdd:PRK13538 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPI--RRQRDEyhqdllylgHQPGIK--------- 86
|
....*...
gi 81855249 94 PNLTVAEN 101
Cdd:PRK13538 87 TELTALEN 94
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
9-64 |
4.87e-08 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 55.28 E-value: 4.87e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 81855249 9 LDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVR 64
Cdd:PRK15064 322 VENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVK 377
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
272-481 |
6.18e-08 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 53.88 E-value: 6.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYD--RRIAGTIAMNGVPVLPnsphaaivagigFAPEDRKHEALLL-F 348
Cdd:CHL00131 23 LKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPayKILEGDILFKGESILD------------LEPEERAHLGIFLaF 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 349 RSILDnaalcVPDKTSS----FGFFNRRKAM-----------EIVSPLAAKMSIKAPNLDEQVSK-LSGGNQQKVVLARW 412
Cdd:CHL00131 91 QYPIE-----IPGVSNAdflrLAYNSKRKFQglpeldpleflEIINEKLKLVGMDPSFLSRNVNEgFSGGEKKRNEILQM 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 81855249 413 LARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILIS--SEMPELIgLADRVLVMAGGRI----TAELA 481
Cdd:CHL00131 166 ALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILIThyQRLLDYI-KPDYVHVMQNGKIiktgDAELA 239
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
265-474 |
8.09e-08 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 53.10 E-value: 8.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 265 AGLTTdrVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVpvLPNSPHAAivagiGFAPEDRKHEA 344
Cdd:cd03290 12 SGLAT--LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNK--NESEPSFE-----ATRSRNRYSVA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 345 LLLFRSILDNAALcvpDKTSSFGF-FNRRKAMEIVSPLAAKMSIKAPNLDEQVS------KLSGGNQQKVVLARWLARQP 417
Cdd:cd03290 83 YAAQKPWLLNATV---EENITFGSpFNKQRYKAVTDACSLQPDIDLLPFGDQTEigergiNLSGGQRQRICVARALYQNT 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 81855249 418 MLLILDEPTRGIDIgakaeiyRLIDELAASGI---------GIILISSEMPELIGlADRVLVMAGG 474
Cdd:cd03290 160 NIVFLDDPFSALDI-------HLSDHLMQEGIlkflqddkrTLVLVTHKLQYLPH-ADWIIAMKDG 217
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
392-479 |
8.63e-08 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 53.56 E-value: 8.63e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 392 LDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASgIGIILISSEMPELIGLADRVLVM 471
Cdd:PRK14271 157 LSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADR-LTVIIVTHNLAQAARISDRAALF 235
|
....*...
gi 81855249 472 AGGRITAE 479
Cdd:PRK14271 236 FDGRLVEE 243
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
274-439 |
8.64e-08 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 54.72 E-value: 8.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 274 DVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSpHAAIVAGIGFAPEDrkheALLLFRSILD 353
Cdd:PRK10790 359 NINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLS-HSVLRQGVAMVQQD----PVVLADTFLA 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 354 NAAL---CVPDKTssfgffnrRKAMEIV--SPLAAKMS--IKAPnLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPT 426
Cdd:PRK10790 434 NVTLgrdISEEQV--------WQALETVqlAELARSLPdgLYTP-LGEQGNNLSVGQKQLLALARVLVQTPQILILDEAT 504
|
170
....*....|...
gi 81855249 427 RGIDIGAKAEIYR 439
Cdd:PRK10790 505 ANIDSGTEQAIQQ 517
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
393-476 |
1.14e-07 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 53.57 E-value: 1.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 393 DEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAAS-GIGIILISSEMPELIGLADRVLVM 471
Cdd:PRK11432 131 DRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQfNITSLYVTHDQSEAFAVSDTVIVM 210
|
....*
gi 81855249 472 AGGRI 476
Cdd:PRK11432 211 NKGKI 215
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
22-224 |
1.21e-07 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 52.72 E-value: 1.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 22 LDNVSIAFRPGEVLALVGENGAGKSTMMRILEGvsgpdtgtvrHGSTPIVFG------------EPRDSHRAGIRVIHQE 89
Cdd:CHL00131 23 LKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG----------HPAYKILEGdilfkgesildlEPEERAHLGIFLAFQY 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 90 P-EI--VPN---LTVAEN---IFVGeLPRlagvlLDWRKLEEQTDRVLATFGMQQDMRPRQLCGTLGPAQRQMIEIMRAI 160
Cdd:CHL00131 93 PiEIpgVSNadfLRLAYNskrKFQG-LPE-----LDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMA 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 81855249 161 RAGGRLIAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISH--RLNEIIdLADRIVVLRDGRLV 224
Cdd:CHL00131 167 LLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHyqRLLDYI-KPDYVHVMQNGKII 231
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
274-473 |
1.52e-07 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 51.80 E-value: 1.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 274 DVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVlPNSPHAAIVAGIGFA----PEDRKHEALLLFR 349
Cdd:PRK13539 20 GLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI-DDPDVAEACHYLGHRnamkPALTVAENLEFWA 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 350 SILDNAALCVPDKTSSFGffnrrkameivspLAAKMSIKAPNldeqvskLSGGNQQKVVLARWLARQPMLLILDEPTRGI 429
Cdd:PRK13539 99 AFLGGEELDIAAALEAVG-------------LAPLAHLPFGY-------LSAGQKRRVALARLLVSNRPIWILDEPTAAL 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 81855249 430 DIGAKAEIYRLIDELAASGiGIILISSEMPelIGLAD-RVLVMAG 473
Cdd:PRK13539 159 DAAAVALFAELIRAHLAQG-GIVIAATHIP--LGLPGaRELDLGP 200
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
18-221 |
1.55e-07 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 54.15 E-value: 1.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 18 VVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHgSTPIVFGEprdshragirvihQEPEIVPNlT 97
Cdd:TIGR01271 438 VTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKH-SGRISFSP-------------QTSWIMPG-T 502
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 98 VAENIFVG---ELPRLAGVLL------DWRKLEEQTDRVLATFGMqqdmrprqlcgTLGPAQRQMIEIMRAIRAGGRLIA 168
Cdd:TIGR01271 503 IKDNIIFGlsyDEYRYTSVIKacqleeDIALFPEKDKTVLGEGGI-----------TLSGGQRARISLARAVYKDADLYL 571
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 81855249 169 FDEPTSSLTDDEARRLF-SVVRRLREKGTSIIYISHRlnEIIDLADRIVVLRDG 221
Cdd:TIGR01271 572 LDSPFTHLDVVTEKEIFeSCLCKLMSNKTRILVTSKL--EHLKKADKILLLHEG 623
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
19-234 |
1.92e-07 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 53.96 E-value: 1.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 19 VQALDNVSIAFRPGEVLALVGENGAGKSTMMRIL----EGVSGPDTGTVRHGSTPivfGEPRDSHRAGIRVIHQEPEI-V 93
Cdd:TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIasntDGFHIGVEGVITYDGIT---PEEIKKHYRGDVVYNAETDVhF 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 94 PNLTVAENI-FVGEL--PRLAGVLLDwRK--LEEQTDRVLATFGMQQ--------DMrPRQLCGtlgpAQRQMIEIMRAI 160
Cdd:TIGR00956 151 PHLTVGETLdFAARCktPQNRPDGVS-REeyAKHIADVYMATYGLSHtrntkvgnDF-VRGVSG----GERKRVSIAEAS 224
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 81855249 161 RAGGRLIAFDEPTSSLTDDEArrlFSVVRRLRE-----KGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSPAAGASE 234
Cdd:TIGR00956 225 LGGAKIQCWDNATRGLDSATA---LEFIRALKTsanilDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQ 300
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
275-493 |
2.04e-07 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 53.70 E-value: 2.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 275 VSLRVRRGEVLGIAGLMGAGRSELAKAIVG---YDrriaGTIAMNGVPvLPNSPHAAIvagigfapedRKH------EAL 345
Cdd:PRK11174 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGflpYQ----GSLKINGIE-LRELDPESW----------RKHlswvgqNPQ 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 346 LLFRSILDNAALCVPDKTSS--FGFFNRRKAMEIVSPLAAkmsikapNLD----EQVSKLSGGNQQKVVLARWLARQPML 419
Cdd:PRK11174 434 LPHGTLRDNVLLGNPDASDEqlQQALENAWVSEFLPLLPQ-------GLDtpigDQAAGLSVGQAQRLALARALLQPCQL 506
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 81855249 420 LILDEPTRGIDIGAKAEIYRLIDElAASGIGIILISSEMPELIGLaDRVLVMAGGRIT-----AELARPDIDEATILKH 493
Cdd:PRK11174 507 LLLDEPTASLDAHSEQLVMQALNA-ASRRQTTLMVTHQLEDLAQW-DQIWVMQDGQIVqqgdyAELSQAGGLFATLLAH 583
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
272-476 |
2.21e-07 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 51.96 E-value: 2.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKA-------IVGYdrRIAGTIAMNGVPVLpnSPHAAIVagigfapEDRKHEA 344
Cdd:COG1117 27 LKDINLDIPENKVTALIGPSGCGKSTLLRClnrmndlIPGA--RVEGEILLDGEDIY--DPDVDVV-------ELRRRVG 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 345 LLlF-------RSILDNAALCVPDKtssfGFFNRRKAMEIVsplaaKMSIKAPN--------LDEQVSKLSGGNQQKVVL 409
Cdd:COG1117 96 MV-FqkpnpfpKSIYDNVAYGLRLH----GIKSKSELDEIV-----EESLRKAAlwdevkdrLKKSALGLSGGQQQRLCI 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 81855249 410 ARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASgIGIILISSEMPELIGLADRVLVMAGGRI 476
Cdd:COG1117 166 ARALAVEPEVLLMDEPTSALDPISTAKIEELILELKKD-YTIVIVTHNMQQAARVSDYTAFFYLGEL 231
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
10-68 |
2.24e-07 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 53.20 E-value: 2.24e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 81855249 10 DGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGST 68
Cdd:PRK11819 328 ENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGET 386
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
30-218 |
2.77e-07 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 51.98 E-value: 2.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 30 RPGEVLALVGENGAGKSTMMRILEGVSGPDTGtvRHGSTP---IVFGEPRDSH---------RAGIRVIHQePEivpnlt 97
Cdd:cd03236 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLG--KFDDPPdwdEILDEFRGSElqnyftkllEGDVKVIVK-PQ------ 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 98 vaeniFVGELPRL----AGVLLDWRKLEEQTDRVLATFGMQQ--DMRPRQLCGtlGPAQRQMIeIMRAIRAgGRLIAFDE 171
Cdd:cd03236 95 -----YVDLIPKAvkgkVGELLKKKDERGKLDELVDQLELRHvlDRNIDQLSG--GELQRVAI-AAALARD-ADFYFFDE 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 81855249 172 PTSSLtdDEARRLFS--VVRRLREKGTSIIYISHRLnEIID-LADRIVVL 218
Cdd:cd03236 166 PSSYL--DIKQRLNAarLIRELAEDDNYVLVVEHDL-AVLDyLSDYIHCL 212
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
392-483 |
2.94e-07 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 52.72 E-value: 2.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 392 LDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGID----IGAKAEIYRLIDELaasGIGIILISSEMPELIGLADR 467
Cdd:PRK11000 127 LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDaalrVQMRIEISRLHKRL---GRTMIYVTHDQVEAMTLADK 203
|
90
....*....|....*.
gi 81855249 468 VLVMAGGRItAELARP 483
Cdd:PRK11000 204 IVVLDAGRV-AQVGKP 218
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
268-493 |
4.07e-07 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 51.33 E-value: 4.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 268 TTDRVNDVSLRVR-------------RGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPvLPNSPHAAIVAGIG 334
Cdd:PRK10575 10 TTFALRNVSFRVPgrtllhplsltfpAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQP-LESWSSKAFARKVA 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 335 FAPEDRKHEALLLFRSILDNAALCVPDKTSSFGFFNRRKAMEIVS-----PLAAKMsikapnldeqVSKLSGGNQQKVVL 409
Cdd:PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISlvglkPLAHRL----------VDSLSGGERQRAWI 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 410 ARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAAS-GIGIILISSEMPELIGLADRVLVMAGGRITAELARPDIDEA 488
Cdd:PRK10575 159 AMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQErGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRG 238
|
....*
gi 81855249 489 TILKH 493
Cdd:PRK10575 239 ETLEQ 243
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
273-476 |
4.36e-07 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 52.52 E-value: 4.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 273 NDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPvLPNSPHAAIVAGIGFAPEdRKHeallLFRSIL 352
Cdd:PRK11160 357 KGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQP-IADYSEAALRQAISVVSQ-RVH----LFSATL 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 353 -DNAALCVPDKTSS--------FGFfnrRKAMEIVSPLAAKmsikapnLDEQVSKLSGGNQQKVVLARWLARQPMLLILD 423
Cdd:PRK11160 431 rDNLLLAAPNASDEalievlqqVGL---EKLLEDDKGLNAW-------LGEGGRQLSGGEQRRLGIARALLHDAPLLLLD 500
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 81855249 424 EPTRGIDIGAKAEIYRLIDELAAsGIGIILISSempELIGLA--DRVLVMAGGRI 476
Cdd:PRK11160 501 EPTEGLDAETERQILELLAEHAQ-NKTVLMITH---RLTGLEqfDRICVMDNGQI 551
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
22-220 |
5.22e-07 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 50.56 E-value: 5.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 22 LDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPD---TGTVRHGSTPIVFGEPrdsHRAGIRVIHQEPEIVPNLTV 98
Cdd:COG4136 17 LAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSPAfsaSGEVLLNGRRLTALPA---EQRRIGILFQDDLLFPHLSV 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 99 AENIFVGELPRLAGVLldwRKleEQTDRVLATFGMQ--QDMRPRQLCGtlgpAQRQMIEIMRAIRAGGRLIAFDEPTSSL 176
Cdd:COG4136 94 GENLAFALPPTIGRAQ---RR--ARVEQALEEAGLAgfADRDPATLSG----GQRARVALLRALLAEPRALLLDEPFSKL 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 81855249 177 tdDEARRL-FS--VVRRLREKGTSIIYISHRLNEIIDlADRIVVLRD 220
Cdd:COG4136 165 --DAALRAqFRefVFEQIRQRGIPALLVTHDEEDAPA-AGRVLDLGN 208
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
392-476 |
5.83e-07 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 51.00 E-value: 5.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 392 LDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASgIGIILISSEMPELIGLADRVLVM 471
Cdd:PRK14267 143 LNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKE-YTIVLVTHSPAQAARVSDYVAFL 221
|
....*
gi 81855249 472 AGGRI 476
Cdd:PRK14267 222 YLGKL 226
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
282-475 |
6.74e-07 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 51.80 E-value: 6.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 282 GEVLGIAGLMGAGRSELAKAIVG--YDRRIAGTIAMNGvpvlpNSPHAAIVAGIGFAPEDRKHEALLLFRSILDNAALCV 359
Cdd:PLN03211 94 GEILAVLGPSGSGKSTLLNALAGriQGNNFTGTILANN-----RKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLR 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 360 PDKTSSfgffnRRKAMEIVSPLAAKMSI-KAPNL---DEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKa 435
Cdd:PLN03211 169 LPKSLT-----KQEKILVAESVISELGLtKCENTiigNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAA- 242
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 81855249 436 eiYRLIDELA--ASGIGIILISSEMP--ELIGLADRVLVMAGGR 475
Cdd:PLN03211 243 --YRLVLTLGslAQKGKTIVTSMHQPssRVYQMFDSVLVLSEGR 284
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
389-490 |
7.34e-07 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 52.05 E-value: 7.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 389 APNLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAAS--GIGIILISSEMPEliglAD 466
Cdd:NF033858 127 APFADRPAGKLSGGMKQKLGLCCALIHDPDLLILDEPTTGVDPLSRRQFWELIDRIRAErpGMSVLVATAYMEE----AE 202
|
90 100 110
....*....|....*....|....*....|....*.
gi 81855249 467 R---VLVMAGGRI-----TAEL-AR---PDIDEATI 490
Cdd:NF033858 203 RfdwLVAMDAGRVlatgtPAELlARtgaDTLEAAFI 238
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
274-474 |
7.45e-07 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 50.63 E-value: 7.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 274 DVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNG--------VPVLPNSPHAAIVAGIGFaPEDRkheal 345
Cdd:cd03291 55 NINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGrisfssqfSWIMPGTIKENIIFGVSY-DEYR----- 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 346 llFRSILDNAALcvpdktssfgffnrrkaMEIVSPLAAKMSIKapnLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEP 425
Cdd:cd03291 129 --YKSVVKACQL-----------------EEDITKFPEKDNTV---LGEGGITLSGGQRARISLARAVYKDADLYLLDSP 186
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 81855249 426 TRGIDIGAKAEIY-RLIDELAASGIGiILISSEMpELIGLADRVLVMAGG 474
Cdd:cd03291 187 FGYLDVFTEKEIFeSCVCKLMANKTR-ILVTSKM-EHLKKADKILILHEG 234
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
29-217 |
8.04e-07 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 50.48 E-value: 8.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 29 FRPGEVLALVGENGAGKSTMMRILEGVSGPDTGtvrhgstpivfgeprDSHRAGIRVIHQEPEIVPNLTVAENIFVGELP 108
Cdd:cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEG---------------DIEIELDTVSYKPQYIKADYEGTVRDLLSSIT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 109 RLAGVLLDWrkleeQTDrVLATFGMQQ--DMRPRQLCGtlGPAQRQMIEIMRAIRAGGRLIafDEPTSSLtDDEARRLFS 186
Cdd:cd03237 87 KDFYTHPYF-----KTE-IAKPLQIEQilDREVPELSG--GELQRVAIAACLSKDADIYLL--DEPSAYL-DVEQRLMAS 155
|
170 180 190
....*....|....*....|....*....|....
gi 81855249 187 -VVRR--LREKGTSIIyISHRLNEIIDLADRIVV 217
Cdd:cd03237 156 kVIRRfaENNEKTAFV-VEHDIIMIDYLADRLIV 188
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
251-479 |
8.76e-07 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 50.89 E-value: 8.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 251 TRETWRSGEQ-LLDVAGLT-----TDRVNDVSLRVRRGEVLGIAGLMGAG--RSELAKAIVGYDR-----RIAGTIAMNG 317
Cdd:NF000106 2 TRKTISNGARnAVEVRGLVkhfgeVKAVDGVDLDVREGTVLGVLGP*GAA**RGALPAHV*GPDAgrrpwRF*TWCANRR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 318 VPVLPNSPHAAIVAGIGFAPEDRkhEALLLFRSILDnaalcvpdktssfgfFNRRKAMEIVSPLAAKMSIKAPnLDEQVS 397
Cdd:NF000106 82 ALRRTIG*HRPVR*GRRESFSGR--ENLYMIGR*LD---------------LSRKDARARADELLERFSLTEA-AGRAAA 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 398 KLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRIT 477
Cdd:NF000106 144 KYSGGMRRRLDLAASMIGRPAVLYLDEPTTGLDPRTRNEVWDEVRSMVRDGATVLLTTQYMEEAEQLAHELTVIDRGRVI 223
|
..
gi 81855249 478 AE 479
Cdd:NF000106 224 AD 225
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
260-485 |
9.27e-07 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 50.21 E-value: 9.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 260 QLLDVAGLTTDRVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVG--------YDRRIAGTIAMNGVPVlpnsphAAIVA 331
Cdd:PRK13547 5 DHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGdltgggapRGARVTGDVTLNGEPL------AAIDA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 332 gigfapedrkhEALLLFRSILDNAA-----LCVPDKTSSFGFFNRRKAMEI------VSPLAAKMSIKAPNLDEQVSKLS 400
Cdd:PRK13547 79 -----------PRLARLRAVLPQAAqpafaFSAREIVLLGRYPHARRAGALthrdgeIAWQALALAGATALVGRDVTTLS 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 401 GGNQQKVVLARWLA---------RQPMLLILDEPTRGIDIgakAEIYRLIDELAASG----IGIILISSEMPELIGLADR 467
Cdd:PRK13547 148 GGELARVQFARVLAqlwpphdaaQPPRYLLLDEPTAALDL---AHQHRLLDTVRRLArdwnLGVLAIVHDPNLAARHADR 224
|
250
....*....|....*...
gi 81855249 468 VLVMAGGRITAELARPDI 485
Cdd:PRK13547 225 IAMLADGAIVAHGAPADV 242
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
22-229 |
9.62e-07 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 51.87 E-value: 9.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 22 LDNVSIAFRPGEVLALVGENGAGKSTM----MRILEGVSGpdtgTVRHGSTPIVFGEPRDShRAGIRVIHQEPEIvpnlt 97
Cdd:TIGR00957 1302 LRHINVTIHGGEKVGIVGRTGAGKSSLtlglFRINESAEG----EIIIDGLNIAKIGLHDL-RFKITIIPQDPVL----- 1371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 98 vaeniFVGELpRLAgvlLD----------WRKLEEQTdrvLATFGMQQDMRPRQLCG----TLGPAQRQMIEIMRAIRAG 163
Cdd:TIGR00957 1372 -----FSGSL-RMN---LDpfsqysdeevWWALELAH---LKTFVSALPDKLDHECAeggeNLSVGQRQLVCLARALLRK 1439
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 81855249 164 GRLIAFDEPTSSLtDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLAdRIVVLRDGRLVD-DSPA 229
Cdd:TIGR00957 1440 TKILVLDEATAAV-DLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYT-RVIVLDKGEVAEfGAPS 1504
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
392-473 |
9.78e-07 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 50.06 E-value: 9.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 392 LDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVM 471
Cdd:cd03236 133 LDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCL 212
|
..
gi 81855249 472 AG 473
Cdd:cd03236 213 YG 214
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
16-213 |
9.80e-07 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 50.17 E-value: 9.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 16 FGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGStpIVFGEPR--DSH------RAGIRVIH 87
Cdd:PRK14243 20 YGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGK--VTFHGKNlyAPDvdpvevRRRIGMVF 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 88 QEPEIVPNlTVAENIFVGelPRLAGVLLDWRKLEEQTDRVLATFGMQQDmRPRQLCGTLGPAQRQMIEIMRAIRAGGRLI 167
Cdd:PRK14243 98 QKPNPFPK-SIYDNIAYG--ARINGYKGDMDELVERSLRQAALWDEVKD-KLKQSGLSLSGGQQQRLCIARAIAVQPEVI 173
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 81855249 168 AFDEPTSSLTDDEARRLFSVVRRLREKGTsIIYISHRLNEIIDLAD 213
Cdd:PRK14243 174 LMDEPCSALDPISTLRIEELMHELKEQYT-IIIVTHNMQQAARVSD 218
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
22-221 |
1.07e-06 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 50.24 E-value: 1.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 22 LDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHgSTPIVFGEprdshragirvihQEPEIVPNlTVAEN 101
Cdd:cd03291 53 LKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKH-SGRISFSS-------------QFSWIMPG-TIKEN 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 102 IFVG---ELPRLAGVLL------DWRKLEEQTDRVLATFGMqqdmrprqlcgTLGPAQRQMIEIMRAIRAGGRLIAFDEP 172
Cdd:cd03291 118 IIFGvsyDEYRYKSVVKacqleeDITKFPEKDNTVLGEGGI-----------TLSGGQRARISLARAVYKDADLYLLDSP 186
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 81855249 173 TSSLTDDEARRLF-SVVRRLREKGTSIIYISHRlnEIIDLADRIVVLRDG 221
Cdd:cd03291 187 FGYLDVFTEKEIFeSCVCKLMANKTRILVTSKM--EHLKKADKILILHEG 234
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
272-479 |
1.31e-06 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 49.45 E-value: 1.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGvpvlpnSPHAAIVAGIGFAPE------------- 338
Cdd:cd03220 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG------RVSSLLGLGGGFNPEltgreniylngrl 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 339 ---DRKhEALLLFRSILDNAALcvpdktssfGFFnrrkameivsplaakmsikapnLDEQVSKLSGGnqQKVVLARWLAR 415
Cdd:cd03220 112 lglSRK-EIDEKIDEIIEFSEL---------GDF----------------------IDLPVKTYSSG--MKARLAFAIAT 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 81855249 416 --QPMLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRITAE 479
Cdd:cd03220 158 alEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFD 223
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
272-471 |
1.33e-06 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 49.33 E-value: 1.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHAAivagigfapedRKH-----EALL 346
Cdd:PRK10247 23 LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIY-----------RQQvsycaQTPT 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 347 LF-RSILDNAAlcvpdktssFGFFNRRKAMEIVSPLAAKMSIKAPN--LDEQVSKLSGGNQQKVVLARWLARQPMLLILD 423
Cdd:PRK10247 92 LFgDTVYDNLI---------FPWQIRNQQPDPAIFLDDLERFALPDtiLTKNIAELSGGEKQRISLIRNLQFMPKVLLLD 162
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 81855249 424 EPTRGIDIGAKAEIYRLIDELAAS-GIGIILISSEMPElIGLADRVLVM 471
Cdd:PRK10247 163 EITSALDESNKHNVNEIIHRYVREqNIAVLWVTHDKDE-INHADKVITL 210
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
272-474 |
1.38e-06 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 49.77 E-value: 1.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAI-----VGYDRRIAGTIAMNGVPVLpnSPHAAIVagigfapEDRKhEALL 346
Cdd:PRK14239 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSInrmndLNPEVTITGSIVYNGHNIY--SPRTDTV-------DLRK-EIGM 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 347 LFR-------SILDNAAlcvpdktssFGF-FNRRKAMEIVSPlAAKMSIKAPNLDEQVSK--------LSGGNQQKVVLA 410
Cdd:PRK14239 91 VFQqpnpfpmSIYENVV---------YGLrLKGIKDKQVLDE-AVEKSLKGASIWDEVKDrlhdsalgLSGGQQQRVCIA 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 81855249 411 RWLARQPMLLILDEPTRGID-IGA---KAEIYRLIDELAasgigIILISSEMPELIGLADRVLVMAGG 474
Cdd:PRK14239 161 RVLATSPKIILLDEPTSALDpISAgkiEETLLGLKDDYT-----MLLVTRSMQQASRISDRTGFFLDG 223
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
21-240 |
1.61e-06 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 50.50 E-value: 1.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 21 ALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVR-HGSTPivfgEPRDSHRA---GIRVIHQEPE---IV 93
Cdd:PRK10982 263 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITlHGKKI----NNHNANEAinhGFALVTEERRstgIY 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 94 PNLTVAENIFVGELPRLAGV--LLDWRKLEEQTDRVLATFGMQQDMRpRQLCGTLGPAQRQMIEIMRAIRAGGRLIAFDE 171
Cdd:PRK10982 339 AYLDIGFNSLISNIRNYKNKvgLLDNSRMKSDTQWVIDSMRVKTPGH-RTQIGSLSGGNQQKVIIGRWLLTQPEILMLDE 417
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 81855249 172 PTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDDSPAAGASEQTIAKL 240
Cdd:PRK10982 418 PTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKTTTQNEILRL 486
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
275-479 |
1.63e-06 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 49.01 E-value: 1.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 275 VSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPV--LPNSPHAAIVA-GIGF------------APED 339
Cdd:PRK10584 29 VELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLhqMDEEARAKLRAkHVGFvfqsfmliptlnALEN 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 340 RKHEALLLFRSildnaalcvpDKTSsfgffnRRKAMEIVSPLAAkmsikAPNLDEQVSKLSGGNQQKVVLARWLARQPML 419
Cdd:PRK10584 109 VELPALLRGES----------SRQS------RNGAKALLEQLGL-----GKRLDHLPAQLSGGEQQRVALARAFNGRPDV 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81855249 420 LILDEPTRGIDIGAKAEIYRLIDELAAS-GIGIILISSEmPELIGLADRVLVMAGGRITAE 479
Cdd:PRK10584 168 LFADEPTGNLDRQTGDKIADLLFSLNREhGTTLILVTHD-LQLAARCDRRLRLVNGQLQEE 227
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
393-476 |
1.80e-06 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 50.78 E-value: 1.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 393 DEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELaASGIGIILISSEMPELIGLADRVLVMA 472
Cdd:TIGR01257 1056 NEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY-RSGRTIIMSTHHMDEADLLGDRIAIIS 1134
|
....
gi 81855249 473 GGRI 476
Cdd:TIGR01257 1135 QGRL 1138
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
7-230 |
1.90e-06 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 49.74 E-value: 1.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 7 FSLDGISKRFG----VVQALDNVSIAFRPGEVLALVGENGAGKS-TMMRILEGVSGPdtGTV--------RHGSTPIVFG 73
Cdd:PRK11022 4 LNVDKLSVHFGdesaPFRAVDRISYSVKQGEVVGIVGESGSGKSvSSLAIMGLIDYP--GRVmaeklefnGQDLQRISEK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 74 EPRDSHRAGIRVIHQEP--EIVPNLTVAENIfVGELPRLAGVLLDWRKleEQTDRVLATFGM-----QQDMRPRQLCGtl 146
Cdd:PRK11022 82 ERRNLVGAEVAMIFQDPmtSLNPCYTVGFQI-MEAIKVHQGGNKKTRR--QRAIDLLNQVGIpdpasRLDVYPHQLSG-- 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 147 GPAQRQMIEImrAIRAGGRLIAFDEPTSSLTDDEARRLFSVVRRL-REKGTSIIYISHRLNEIIDLADRIVVLRDGRLVD 225
Cdd:PRK11022 157 GMSQRVMIAM--AIACRPKLLIADEPTTALDVTIQAQIIELLLELqQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234
|
....*
gi 81855249 226 DSPAA 230
Cdd:PRK11022 235 TGKAH 239
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
22-229 |
2.13e-06 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 50.51 E-value: 2.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 22 LDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVrhgstpIVFGepRDSHRAGIRVIHQEPEIVPNLTVaen 101
Cdd:PLN03130 1255 LHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRI------LIDG--CDISKFGLMDLRKVLGIIPQAPV--- 1323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 102 IFVGELpRLAgvlLD----------WRKLEEQ--TDRVLA-TFGMQQDMRPRQLCGTLGpaQRQMIEIMRAIRAGGRLIA 168
Cdd:PLN03130 1324 LFSGTV-RFN---LDpfnehndadlWESLERAhlKDVIRRnSLGLDAEVSEAGENFSVG--QRQLLSLARALLRRSKILV 1397
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 81855249 169 FDEPTSSLtddEARRLFSVVRRLRE--KGTSIIYISHRLNEIIDlADRIVVLRDGRLVD-DSPA 229
Cdd:PLN03130 1398 LDEATAAV---DVRTDALIQKTIREefKSCTMLIIAHRLNTIID-CDRILVLDAGRVVEfDTPE 1457
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
399-478 |
2.26e-06 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 49.24 E-value: 2.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 399 LSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRITA 478
Cdd:PRK13638 137 LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILT 216
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
371-477 |
2.32e-06 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 50.17 E-value: 2.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 371 RRKAMEIVSplaaKMSIKaPNLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASGIG 450
Cdd:COG1245 190 RGKLDELAE----KLGLE-NILDRDISELSGGELQRVAIAAALLRDADFYFFDEPSSYLDIYQRLNVARLIRELAEEGKY 264
|
90 100 110
....*....|....*....|....*....|..
gi 81855249 451 IILISSEMPELIGLADRVLVMAG-----GRIT 477
Cdd:COG1245 265 VLVVEHDLAILDYLADYVHILYGepgvyGVVS 296
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
11-226 |
2.79e-06 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 49.35 E-value: 2.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 11 GISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMrILEGVSGPDTGtvrhgSTPIVFGEPRDSHRAGIRVIHQEP 90
Cdd:NF000106 18 GLVKHFGEVKAVDGVDLDVREGTVLGVLGP*GAA**RGA-LPAHV*GPDAG-----RRPWRF*TWCANRRALRRTIG*HR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 91 EIVP----NLTVAENIFvgelprLAGVLLDWRKLEEQT--DRVLATFGMQQdmRPRQLCGTLGPAQRQMIEIMRAIRAGG 164
Cdd:NF000106 92 PVR*grreSFSGRENLY------MIGR*LDLSRKDARAraDELLERFSLTE--AAGRAAAKYSGGMRRRLDLAASMIGRP 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 81855249 165 RLIAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNEIIDLADRIVVLRDGRLVDD 226
Cdd:NF000106 164 AVLYLDEPTTGLDPRTRNEVWDEVRSMVRDGATVLLTTQYMEEAEQLAHELTVIDRGRVIAD 225
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
19-221 |
3.05e-06 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 50.23 E-value: 3.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 19 VQALDNVSIAFRPGEVLALVGENGAGKSTMMRILegvSGPDTGTVRHGSTPIVfGEPRDSHR-AGIRVIHQEPEI-VPNL 96
Cdd:PLN03140 893 LQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVL---AGRKTGGYIEGDIRIS-GFPKKQETfARISGYCEQNDIhSPQV 968
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 97 TVAENIFVGELPRLAGVLLDWRKLeEQTDRVLATFGMqQDMRPR--QLCGTLGPA--QRQMIEIMRAIRAGGRLIAFDEP 172
Cdd:PLN03140 969 TVRESLIYSAFLRLPKEVSKEEKM-MFVDEVMELVEL-DNLKDAivGLPGVTGLSteQRKRLTIAVELVANPSIIFMDEP 1046
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 81855249 173 TSSLTDDEARRLFSVVRRLREKGTSIIYISHRLN-EIIDLADRIVVLRDG 221
Cdd:PLN03140 1047 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSiDIFEAFDELLLMKRG 1096
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
267-474 |
3.05e-06 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 50.29 E-value: 3.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 267 LTTDRVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGvpvlpnsphaaivaGIGFAPEdrkhEALL 346
Cdd:TIGR01271 437 YVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG--------------RISFSPQ----TSWI 498
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 347 LFRSILDNAALCVpdKTSSFGFFNRRKAMEIVSPLAakmsiKAPNLDEQV-----SKLSGGNQQKVVLARWLARQPMLLI 421
Cdd:TIGR01271 499 MPGTIKDNIIFGL--SYDEYRYTSVIKACQLEEDIA-----LFPEKDKTVlgeggITLSGGQRARISLARAVYKDADLYL 571
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 81855249 422 LDEPTRGIDIGAKAEIY-RLIDELAASGIGiILISSEMpELIGLADRVLVMAGG 474
Cdd:TIGR01271 572 LDSPFTHLDVVTEKEIFeSCLCKLMSNKTR-ILVTSKL-EHLKKADKILLLHEG 623
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
279-473 |
3.64e-06 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 48.17 E-value: 3.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 279 VRRGEVLGIAGLMGAGRSELAKAIvgydrriAGTIAMNGVPVLpnsphaAIVAGIGFAPE----DRKHEALLLFRSILDN 354
Cdd:cd03237 22 ISESEVIGILGPNGIGKTTFIKML-------AGVLKPDEGDIE------IELDTVSYKPQyikaDYEGTVRDLLSSITKD 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 355 AAlcvpdktsSFGFFNrrkaMEIVSPLAAKmsikaPNLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGID---- 430
Cdd:cd03237 89 FY--------THPYFK----TEIAKPLQIE-----QILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDveqr 151
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 81855249 431 -IGAKAeIYRLIDELAASGI----GIILISSempeligLADRVLVMAG 473
Cdd:cd03237 152 lMASKV-IRRFAENNEKTAFvvehDIIMIDY-------LADRLIVFEG 191
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
272-489 |
3.93e-06 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 49.20 E-value: 3.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLPNSPHAAivagigfapedRKHEALL----- 346
Cdd:PRK10522 339 VGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDY-----------RKLFSAVftdfh 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 347 LFRSILDNAALcVPDKTSSFGFFNRRKameivspLAAKMSIKapnlDEQVS--KLSGGNQQKVVLARWLARQPMLLILDE 424
Cdd:PRK10522 408 LFDQLLGPEGK-PANPALVEKWLERLK-------MAHKLELE----DGRISnlKLSKGQKKRLALLLALAEERDILLLDE 475
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 81855249 425 PTRGIDIGAKAEIYR-LIDELAASGIGIILISSEMPELIGlADRVLVMAGGRITaELARPDIDEAT 489
Cdd:PRK10522 476 WAADQDPHFRREFYQvLLPLLQEMGKTIFAISHDDHYFIH-ADRLLEMRNGQLS-ELTGEERDAAS 539
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
272-473 |
3.93e-06 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 47.86 E-value: 3.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGY---DRRIAGTIAMNGVPVLPNSPHAAivaGIGFAPEDRkhealLLF 348
Cdd:COG4136 17 LAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTlspAFSASGEVLLNGRRLTALPAEQR---RIGILFQDD-----LLF 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 349 R--SILDNAALCVPdktSSFGFFNRRKAMEivsplAAKMSIKAPNL-DEQVSKLSGGNQQKVVLARWLARQPMLLILDEP 425
Cdd:COG4136 89 PhlSVGENLAFALP---PTIGRAQRRARVE-----QALEEAGLAGFaDRDPATLSGGQRARVALLRALLAEPRALLLDEP 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 81855249 426 TRGIDIGAKAEIYRLI-DELAASGIGIILISSEmPELIGLADRVLVMAG 473
Cdd:COG4136 161 FSKLDAALRAQFREFVfEQIRQRGIPALLVTHD-EEDAPAAGRVLDLGN 208
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
22-213 |
4.52e-06 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 48.11 E-value: 4.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 22 LDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDtGTVRHGSTPIVFGEPRDSHRAGIR-------VIHQEPEIVP 94
Cdd:PRK14258 23 LEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELE-SEVRVEGRVEFFNQNIYERRVNLNrlrrqvsMVHPKPNLFP 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 95 nLTVAENI-----FVGELPRLA--GVLLDWRKLEEQTDRVlatfgmQQDMRPRQLcgTLGPAQRQMIEIMRAIRAGGRLI 167
Cdd:PRK14258 102 -MSVYDNVaygvkIVGWRPKLEidDIVESALKDADLWDEI------KHKIHKSAL--DLSGGQQQRLCIARALAVKPKVL 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 81855249 168 AFDEPTSSLTDDEARRLFSVVRRLREKGT-SIIYISHRLNEIIDLAD 213
Cdd:PRK14258 173 LMDEPCFGLDPIASMKVESLIQSLRLRSElTMVIVSHNLHQVSRLSD 219
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
22-241 |
4.76e-06 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 49.59 E-value: 4.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 22 LDNVSIAFRPGEVLALVGENGAGKSTMMRILegvsgpdTGTVRHGSTPIVfgeprdSHRAGIRVIHQEPEIVpNLTVAEN 101
Cdd:PLN03232 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAM-------LGELSHAETSSV------VIRGSVAYVPQVSWIF-NATVREN 698
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 102 IFVGElprlagvlldwrKLE-EQTDRVLATFGMQQDM-----RPRQLCGTLG----PAQRQMIEIMRAIRAGGRLIAFDE 171
Cdd:PLN03232 699 ILFGS------------DFEsERYWRAIDVTALQHDLdllpgRDLTEIGERGvnisGGQKQRVSMARAVYSNSDIYIFDD 766
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 81855249 172 PTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLNeIIDLADRIVVLRDGRLVDDSPAAGASEQTI--AKLM 241
Cdd:PLN03232 767 PLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLH-FLPLMDRIILVSEGMIKEEGTFAELSKSGSlfKKLM 837
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
392-462 |
5.16e-06 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 47.17 E-value: 5.16e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81855249 392 LDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASGiGIILISSEMPELI 462
Cdd:PRK13541 117 LDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSG-GIVLLSSHLESSI 186
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
22-221 |
6.71e-06 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 48.65 E-value: 6.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 22 LDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTV-RHGSTPIVF-------------------GEPRDSHRA 81
Cdd:COG4178 379 LEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYGSGRIaRPAGARVLFlpqrpylplgtlreallypATAEAFSDA 458
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 82 GIR-VIHQepeivpnltvaenifVGeLPRLAGvlldwrKLEEQTD--RVLatfgmqqdmrprqlcgTLGPAQRqmIEIMR 158
Cdd:COG4178 459 ELReALEA---------------VG-LGHLAE------RLDEEADwdQVL----------------SLGEQQR--LAFAR 498
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 81855249 159 AIRAGGRLIAFDEPTSSLTDDEARRLFSVVRRlREKGTSIIYISHRlNEIIDLADRIVVLRDG 221
Cdd:COG4178 499 LLLHKPDWLFLDEATSALDEENEAALYQLLRE-ELPGTTVISVGHR-STLAAFHDRVLELTGD 559
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
397-484 |
7.02e-06 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 48.87 E-value: 7.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 397 SKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMA---- 472
Cdd:PTZ00265 578 SKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSnrer 657
|
90
....*....|..
gi 81855249 473 GGRITAELARPD 484
Cdd:PTZ00265 658 GSTVDVDIIGED 669
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
21-223 |
7.67e-06 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 48.43 E-value: 7.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 21 ALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPiVFGEPRDSHRAGI-----------RVIHQE 89
Cdd:PRK10522 338 SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKP-VTAEQPEDYRKLFsavftdfhlfdQLLGPE 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 90 PEIVPNLTVAEnifvgELPRLAGVlldwRKLEEQTDRVLATfgmqqdmrprqlcgTLGPAQRQMIEIMRAIRAGGRLIAF 169
Cdd:PRK10522 417 GKPANPALVEK-----WLERLKMA----HKLELEDGRISNL--------------KLSKGQKKRLALLLALAEERDILLL 473
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 81855249 170 DEPTSSlTDDEARRLFSVV--RRLREKGTSIIYISHRlNEIIDLADRIVVLRDGRL 223
Cdd:PRK10522 474 DEWAAD-QDPHFRREFYQVllPLLQEMGKTIFAISHD-DHYFIHADRLLEMRNGQL 527
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
147-237 |
8.43e-06 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 48.47 E-value: 8.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 147 GPAQRQMIEIMRAIRAGGR-LIAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLnEIIDLADRIVVL------R 219
Cdd:TIGR00630 833 GEAQRIKLAKELSKRSTGRtLYILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIEHNL-DVIKTADYIIDLgpeggdG 911
|
90
....*....|....*...
gi 81855249 220 DGRLVddspAAGASEQTI 237
Cdd:TIGR00630 912 GGTVV----ASGTPEEVA 925
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
273-476 |
8.47e-06 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 48.28 E-value: 8.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 273 NDVSLRVRRGEVLGIAGLMGAGRSELAKAIVG-YDRrIAGTIAMNGVP---VLPNSPHAAIvagiGFAPEDrkheaLLLF 348
Cdd:COG5265 375 KGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRfYDV-TSGRILIDGQDirdVTQASLRAAI----GIVPQD-----TVLF 444
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 349 R-SILDNAALCVPDKTSSfgffnrrkamEIVSplAAKMS-----IKA-PN-LDEQVS----KLSGGNQQKVVLARWLARQ 416
Cdd:COG5265 445 NdTIAYNIAYGRPDASEE----------EVEA--AARAAqihdfIESlPDgYDTRVGerglKLSGGEKQRVAIARTLLKN 512
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 417 PMLLILDEPTRGIDIGAKAEIYRLIDELAAsGIGIILISSEMPELIGlADRVLVMAGGRI 476
Cdd:COG5265 513 PPILIFDEATSALDSRTERAIQAALREVAR-GRTTLVIAHRLSTIVD-ADEILVLEAGRI 570
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
15-431 |
8.65e-06 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 48.24 E-value: 8.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 15 RFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTpivfgeprdshrAGIRVIHQEpeiVP 94
Cdd:PRK10636 10 RRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN------------WQLAWVNQE---TP 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 95 NLTVAENIFVGELPRlagvllDWRKLEEQTD--------RVLATFGMQQD------MRPR--QLCGTLGPAQRQMIEIMR 158
Cdd:PRK10636 75 ALPQPALEYVIDGDR------EYRQLEAQLHdanerndgHAIATIHGKLDaidawtIRSRaaSLLHGLGFSNEQLERPVS 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 159 AIRAGGR--------------LIAFDEPTSSLTDDEARRLfsvVRRLREKGTSIIYISHRLNEIIDLADRIV-------- 216
Cdd:PRK10636 149 DFSGGWRmrlnlaqalicrsdLLLLDEPTNHLDLDAVIWL---EKWLKSYQGTLILISHDRDFLDPIVDKIIhieqqslf 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 217 ----------VLRDGRLVDDSPAAGASEQTIAKL----------------------MVGR-------NIDDLFtRETWRS 257
Cdd:PRK10636 226 eytgnyssfeVQRATRLAQQQAMYESQQERVAHLqsyidrfrakatkakqaqsrikMLERmeliapaHVDNPF-HFSFRA 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 258 GEQLLD-------VAGLTTDRV--NDVSLRVRRGEVLGIAGLMGAGRSELAKAivgydrrIAGTIAmngvpvlPNSPHAA 328
Cdd:PRK10636 305 PESLPNpllkmekVSAGYGDRIilDSIKLNLVPGSRIGLLGRNGAGKSTLIKL-------LAGELA-------PVSGEIG 370
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 329 IVAGIG---FApeDRKHEALLLFRSILDNAALCVP--------DKTSSFGFfnrrkameivsplaakmsiKAPNLDEQVS 397
Cdd:PRK10636 371 LAKGIKlgyFA--QHQLEFLRADESPLQHLARLAPqeleqklrDYLGGFGF-------------------QGDKVTEETR 429
|
490 500 510
....*....|....*....|....*....|....
gi 81855249 398 KLSGGNQQKVVLARWLARQPMLLILDEPTRGIDI 431
Cdd:PRK10636 430 RFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDL 463
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
392-479 |
9.07e-06 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 46.16 E-value: 9.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 392 LDEQVSKLSGGNQQKVVLARWLARQP--MLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEmPELIGLADRVL 469
Cdd:cd03238 81 LGQKLSTLSGGELQRVKLASELFSEPpgTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHN-LDVLSSADWII 159
|
90
....*....|....*.
gi 81855249 470 VMA------GGRITAE 479
Cdd:cd03238 160 DFGpgsgksGGKVVFS 175
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
273-476 |
1.00e-05 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 48.09 E-value: 1.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 273 NDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPV----LPNSphaaivagigfapedRKHEALL-- 346
Cdd:PRK11176 360 RNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLrdytLASL---------------RNQVALVsq 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 347 ---LFR-SILDNAALCVPDKTSsfgffnrRKAMEIVSPLAAKMS--IKAPN-LD----EQVSKLSGGNQQKVVLARWLAR 415
Cdd:PRK11176 425 nvhLFNdTIANNIAYARTEQYS-------REQIEEAARMAYAMDfiNKMDNgLDtvigENGVLLSGGQRQRIAIARALLR 497
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 81855249 416 QPMLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIIL---ISSempelIGLADRVLVMAGGRI 476
Cdd:PRK11176 498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIahrLST-----IEKADEILVVEDGEI 556
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
396-456 |
1.15e-05 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 46.34 E-value: 1.15e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 81855249 396 VSKLSGGNQQKVVLAR-WLARQPmLLILDEPTRGIDIGAKAEIYRLIDELAASGiGIILISS 456
Cdd:PRK13538 127 VRQLSAGQQRRVALARlWLTRAP-LWILDEPFTAIDKQGVARLEALLAQHAEQG-GMVILTT 186
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
272-476 |
1.24e-05 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 46.93 E-value: 1.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAkaivgydRRIAGTIAMNGVPVLPNSPHAAIVAGIG-FAPEDRKHEA------ 344
Cdd:PRK09984 20 LHAVDLNIHHGEMVALLGPSGSGKSTLL-------RHLSGLITGDKSAGSHIELLGRTVQREGrLARDIRKSRAntgyif 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 345 --------LLLFRSILDNAALCVPDKTSSFGFFNRRKAMEIVSPLA-AKMSIKApnlDEQVSKLSGGNQQKVVLARWLAR 415
Cdd:PRK09984 93 qqfnlvnrLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTrVGMVHFA---HQRVSTLSGGQQQRVAIARALMQ 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 81855249 416 QPMLLILDEPTRGIDI-GAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRI 476
Cdd:PRK09984 170 QAKVILADEPIASLDPeSARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHV 231
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
254-474 |
1.27e-05 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 46.08 E-value: 1.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 254 TWRSGEQLLDVAGLTTDRVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGydRRIAGTIA----MNGVPVLPNSPHaai 329
Cdd:cd03232 5 TWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAG--RKTAGVITgeilINGRPLDKNFQR--- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 330 vaGIGFAPEDRKHEALLLFRSILDNAA----LCVPDktssfgffnrRKAMEIVSPLAAKmsikapnldeqvsklsggnqq 405
Cdd:cd03232 80 --STGYVEQQDVHSPNLTVREALRFSAllrgLSVEQ----------RKRLTIGVELAAK--------------------- 126
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 406 kvvlarwlarqPMLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIIL-ISSEMPELIGLADRVLVMAGG 474
Cdd:cd03232 127 -----------PSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCtIHQPSASIFEKFDRLLLLKRG 185
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
21-71 |
1.34e-05 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 46.73 E-value: 1.34e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 81855249 21 ALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTV-RHGSTPIV 71
Cdd:PRK13546 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVdRNGEVSVI 90
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
12-63 |
1.61e-05 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 47.58 E-value: 1.61e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 81855249 12 ISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTV 63
Cdd:PRK15064 7 ITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNV 58
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
170-298 |
1.74e-05 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 47.90 E-value: 1.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 170 DEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRlNEIIDLADRIVVLRDGR-------LVDDSPA---AGASEQTIAK 239
Cdd:PRK00635 503 DEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHD-EQMISLADRIIDIGPGAgifggevLFNGSPReflAKSDSLTAKY 581
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 81855249 240 LMVGRNIDDLFTRETWRSGeqlLDVAGLTTDRVNDVSLRVRRGEVLGIAGLMGAGRSEL 298
Cdd:PRK00635 582 LRQELTIPIPEKRTNSLGT---LTLSKATKHNLKDLTISLPLGRLTVVTGVSGSGKSSL 637
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
21-63 |
2.02e-05 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 47.19 E-value: 2.02e-05
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 81855249 21 ALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTV 63
Cdd:PRK13545 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV 81
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
393-492 |
2.06e-05 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 46.13 E-value: 2.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 393 DEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDEL-AASGIGIILISSEMPELIGLADRVLVM 471
Cdd:PRK10253 138 DQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELnREKGYTLAAVLHDLNQACRYASHLIAL 217
|
90 100
....*....|....*....|.
gi 81855249 472 AGGRITAELARPDIDEATILK 492
Cdd:PRK10253 218 REGKIVAQGAPKEIVTAELIE 238
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
272-477 |
3.74e-05 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 46.48 E-value: 3.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGvpvlpnspHAAIVAGIGFAPEDRKHEALLL---- 347
Cdd:TIGR00957 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG--------SVAYVPQQAWIQNDSLRENILFgkal 725
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 348 ----FRSILDNAALcVPDktssfgffnrrkaMEIVsPLAAKMSIkapnlDEQVSKLSGGNQQKVVLARWLARQPMLLILD 423
Cdd:TIGR00957 726 nekyYQQVLEACAL-LPD-------------LEIL-PSGDRTEI-----GEKGVNLSGGQKQRVSLARAVYSNADIYLFD 785
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 81855249 424 EPTRGIDIGAKAEIYRLI--DELAASGIGIILIS---SEMPELiglaDRVLVMAGGRIT 477
Cdd:TIGR00957 786 DPLSAVDAHVGKHIFEHVigPEGVLKNKTRILVThgiSYLPQV----DVIIVMSGGKIS 840
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
1-224 |
3.90e-05 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 45.53 E-value: 3.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 1 MTQSDFFSLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTV--RHGSTPIVFGEPRDS 78
Cdd:PRK11831 2 QSVANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEIlfDGENIPAMSRSRLYT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 79 HRAGIRVIHQEPEIVPNLTVAENIF--VGELPRLAGVLLD---WRKLEEQTDRVLAtfgmqqDMRPRQLCGtlGPAQRQm 153
Cdd:PRK11831 82 VRKRMSMLFQSGALFTDMNVFDNVAypLREHTQLPAPLLHstvMMKLEAVGLRGAA------KLMPSELSG--GMARRA- 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 81855249 154 iEIMRAIRAGGRLIAFDEPTSSLTDDEARRLFSVVRRLREK-GTSIIYISHRLNEIIDLADRIVVLRDGRLV 224
Cdd:PRK11831 153 -ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSAlGVTCVVVSHDVPEVLSIADHAYIVADKKIV 223
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
85-238 |
4.21e-05 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 46.56 E-value: 4.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 85 VIHQEPeIVPNLTVAENIFVGelpRLAGVLLDWRKLEE--QTDRVLATFGMQQDMRPRQLCGTLGPAQRQMIEIMRAIRA 162
Cdd:PTZ00265 1300 IVSQEP-MLFNMSIYENIKFG---KEDATREDVKRACKfaAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLR 1375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 163 GGRLIAFDEPTSSLTDDEARRLFSVVRRLREKG-TSIIYISHRLNEiIDLADRIVVL----RDGRLVDdspAAGASEQTI 237
Cdd:PTZ00265 1376 EPKILLLDEATSSLDSNSEKLIEKTIVDIKDKAdKTIITIAHRIAS-IKRSDKIVVFnnpdRTGSFVQ---AHGTHEELL 1451
|
.
gi 81855249 238 A 238
Cdd:PTZ00265 1452 S 1452
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
22-216 |
4.23e-05 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 43.89 E-value: 4.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 22 LDNVSIAFRPGEVLALVGENGAGKSTMMRilegvsgpdtgtvrhgstPIVFGEPRDSHRAGIRVIHQEPEIVPNLTVaen 101
Cdd:cd03227 11 FVPNDVTFGEGSLTIITGPNGSGKSTILD------------------AIGLALGGAQSATRRRSGVKAGCIVAAVSA--- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 102 IFVGELPRLAGvlldwrkleeqtdrvlatfgmqqdmrprqlcgtlGPAQRQMIEIMRAIRAGGR--LIAFDEPTSSLTDD 179
Cdd:cd03227 70 ELIFTRLQLSG----------------------------------GEKELSALALILALASLKPrpLYILDEIDRGLDPR 115
|
170 180 190
....*....|....*....|....*....|....*..
gi 81855249 180 EARRLFSVVRRLREKGTSIIYISHRlNEIIDLADRIV 216
Cdd:cd03227 116 DGQALAEAILEHLVKGAQVIVITHL-PELAELADKLI 151
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
241-455 |
4.35e-05 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 44.95 E-value: 4.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 241 MVGRNIDDLFTRETWRSgEQLLDVA---GLTTDRV-----NDVSLRVRRGEVLGIAGLMGAGRSELAKAIVG--YDRRIA 310
Cdd:COG2401 8 FVLMRVTKVYSSVLDLS-ERVAIVLeafGVELRVVeryvlRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGalKGTPVA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 311 GTIAmngVPVLPNSPHAAIVagigfapedrkhEALLLFRSILDnaalcvpdktssfgffnrrkAMEIVSplAAKMSiKAP 390
Cdd:COG2401 87 GCVD---VPDNQFGREASLI------------DAIGRKGDFKD--------------------AVELLN--AVGLS-DAV 128
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 81855249 391 NLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGID-IGAKAEIYRLIDELAASGIGIILIS 455
Cdd:COG2401 129 LWLRRFKELSTGQKFRFRLALLLAERPKLLVIDEFCSHLDrQTAKRVARNLQKLARRAGITLVVAT 194
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
144-298 |
4.83e-05 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 46.16 E-value: 4.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 144 GTLGPAQRQMIEIMRAIRAG--GRLIAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRlNEIIDLADRIVVL--- 218
Cdd:TIGR00630 487 GTLSGGEAQRIRLATQIGSGltGVLYVLDEPSIGLHQRDNRRLINTLKRLRDLGNTLIVVEHD-EDTIRAADYVIDIgpg 565
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 219 ---RDGRLVddspAAGASEQTIAK-------LMVGRNIDDLFTRETWRSGEQLLdVAGLTTDRVNDVSLRVRRGEVLGIA 288
Cdd:TIGR00630 566 ageHGGEVV----ASGTPEEILANpdsltgqYLSGRKKIEVPAERRPGNGKFLT-LKGARENNLKNITVSIPLGLFTCIT 640
|
170
....*....|
gi 81855249 289 GLMGAGRSEL 298
Cdd:TIGR00630 641 GVSGSGKSTL 650
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
19-220 |
4.95e-05 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 46.18 E-value: 4.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 19 VQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVrhgstpIVfgepRDSH----------RAGIRVIHQ 88
Cdd:PTZ00265 398 VEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDI------II----NDSHnlkdinlkwwRSKIGVVSQ 467
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 89 EPEIVPNlTVAENIFVGELPrlagvLLDWRKLEEQTDRvlATFGMQQDMRPRQLC------------------------- 143
Cdd:PTZ00265 468 DPLLFSN-SIKNNIKYSLYS-----LKDLEALSNYYNE--DGNDSQENKNKRNSCrakcagdlndmsnttdsneliemrk 539
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 144 --------------------------------------GTLGPAQRQMIEIMRAIRAGGRLIAFDEPTSSLTDDEARRLF 185
Cdd:PTZ00265 540 nyqtikdsevvdvskkvlihdfvsalpdkyetlvgsnaSKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQ 619
|
250 260 270
....*....|....*....|....*....|....*.
gi 81855249 186 SVVRRLREKGTSI-IYISHRLNeIIDLADRIVVLRD 220
Cdd:PTZ00265 620 KTINNLKGNENRItIIIAHRLS-TIRYANTIFVLSN 654
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
382-476 |
7.54e-05 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 44.83 E-value: 7.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 382 AAKMSIKAPNLDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDigAK------AEIYRLIDELAASGigiILIS 455
Cdd:PRK11650 118 AARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD--AKlrvqmrLEIQRLHRRLKTTS---LYVT 192
|
90 100
....*....|....*....|.
gi 81855249 456 SEMPELIGLADRVLVMAGGRI 476
Cdd:PRK11650 193 HDQVEAMTLADRVVVMNGGVA 213
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
144-231 |
8.53e-05 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 43.79 E-value: 8.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 144 GTLGPAQRQMIEIMRAIRAG--GRLIAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLnEIIDLADRIvvlrdg 221
Cdd:cd03270 136 PTLSGGEAQRIRLATQIGSGltGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDE-DTIRAADHV------ 208
|
90
....*....|
gi 81855249 222 rlVDDSPAAG 231
Cdd:cd03270 209 --IDIGPGAG 216
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
393-426 |
8.91e-05 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 45.11 E-value: 8.91e-05
10 20 30
....*....|....*....|....*....|....
gi 81855249 393 DEQVSKLSGGNQQKVVLARWLARQPMLLILDEPT 426
Cdd:PRK11819 158 DAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPT 191
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
31-176 |
1.07e-04 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 43.68 E-value: 1.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 31 PGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIVFGEpRDSHRAgirVIHQEPEIVPNLTVAENifvgeLPRL 110
Cdd:PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD-RSRFMA---YLGHLPGLKADLSTLEN-----LHFL 106
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 81855249 111 AGvlLDWRKLEEQTDRVLATFGM--QQDMRPRQLCGtlgpAQRQMIEIMRAIRAGGRLIAFDEPTSSL 176
Cdd:PRK13543 107 CG--LHGRRAKQMPGSALAIVGLagYEDTLVRQLSA----GQKKRLALARLWLSPAPLWLLDEPYANL 168
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
147-218 |
1.70e-04 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 43.37 E-value: 1.70e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 81855249 147 GPAQRqmIEIMRAI--RAGGR-LIAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLnEIIDLADRIVVL 218
Cdd:cd03271 173 GEAQR--IKLAKELskRSTGKtLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNL-DVIKCADWIIDL 244
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
392-466 |
1.81e-04 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 43.23 E-value: 1.81e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 81855249 392 LDEQVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASgIGIILISSEMPELIGLAD 466
Cdd:PRK14243 145 LKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQ-YTIIIVTHNMQQAARVSD 218
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
392-476 |
1.83e-04 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 44.58 E-value: 1.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 392 LDEQVSK----LSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASgIGIILISSEMPELIGlADR 467
Cdd:PLN03232 1361 LDAEVSEggenFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKS-CTMLVIAHRLNTIID-CDK 1438
|
....*....
gi 81855249 468 VLVMAGGRI 476
Cdd:PLN03232 1439 ILVLSSGQV 1447
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
272-488 |
2.13e-04 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 42.76 E-value: 2.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 272 VNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNG-VpvlpnsphAAIVA-GIGFAPEdrkheaLLLFR 349
Cdd:COG1134 42 LKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRVEVNGrV--------SALLElGAGFHPE------LTGRE 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 350 SILDNAALcvpdktssFGFfnRRKAMEivsplaAKM-SIKA-----PNLDEQVSKLSGGNQQKVVLARWLARQPMLLILD 423
Cdd:COG1134 108 NIYLNGRL--------LGL--SRKEID------EKFdEIVEfaelgDFIDQPVKTYSSGMRARLAFAVATAVDPDILLVD 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 424 EptrGIDIG-----AKAeiYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRITAElarPDIDEA 488
Cdd:COG1134 172 E---VLAVGdaafqKKC--LARIRELRESGRTVIFVSHSMGAVRRLCDRAIWLEKGRLVMD---GDPEEV 233
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
399-470 |
2.72e-04 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 43.86 E-value: 2.72e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 81855249 399 LSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRVLV 470
Cdd:PTZ00265 1359 LSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVV 1430
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
145-239 |
2.80e-04 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 43.86 E-value: 2.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 145 TL--GPAQRqmIEIMR--AIRAGGR-LIAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLnEIIDLADRIVVL- 218
Cdd:COG0178 826 TLsgGEAQR--VKLASelSKRSTGKtLYILDEPTTGLHFHDIRKLLEVLHRLVDKGNTVVVIEHNL-DVIKTADWIIDLg 902
|
90 100
....*....|....*....|....*.
gi 81855249 219 -----RDGRLVddspAAGASEQtIAK 239
Cdd:COG0178 903 peggdGGGEIV----AEGTPEE-VAK 923
|
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
161-239 |
4.86e-04 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 42.75 E-value: 4.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 161 RAGGR-LIAFDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHRLnEIIDLADRIVVL------RDGRLVddspAAGAS 233
Cdd:PRK00349 848 RSTGKtLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNL-DVIKTADWIIDLgpeggdGGGEIV----ATGTP 922
|
....*.
gi 81855249 234 EQtIAK 239
Cdd:PRK00349 923 EE-VAK 927
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
392-476 |
5.08e-04 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 42.80 E-value: 5.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 392 LDEQVSK----LSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIIlISSEMPELIGlADR 467
Cdd:PLN03130 1364 LDAEVSEagenFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLI-IAHRLNTIID-CDR 1441
|
....*....
gi 81855249 468 VLVMAGGRI 476
Cdd:PLN03130 1442 ILVLDAGRV 1450
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
399-477 |
5.52e-04 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 42.54 E-value: 5.52e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 81855249 399 LSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAkaeIYRLIDELAASGIGIILISSEMPELIGLADRVLVMAGGRIT 477
Cdd:PLN03073 628 LSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDA---VEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVT 703
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
7-102 |
8.23e-04 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 41.86 E-value: 8.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 7 FSLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVRHGSTPIV--FgeprDSHRAgir 84
Cdd:PRK11147 320 FEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVayF----DQHRA--- 392
|
90
....*....|....*...
gi 81855249 85 vihqepEIVPNLTVAENI 102
Cdd:PRK11147 393 ------ELDPEKTVMDNL 404
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
12-61 |
8.47e-04 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 40.25 E-value: 8.47e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 81855249 12 ISKRFGVVQALDNVSIaFRPGEVLALVGENGAGKSTMMRILEGVSGPDTG 61
Cdd:cd03222 6 CVKRYGVFFLLVELGV-VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGD 54
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
246-333 |
1.51e-03 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 41.03 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 246 IDDLFtretWRSGEQLLDVAglttdrVNDVSLRVRRGEVLGIAGLMGAGRSELAKAIVGYDRRIAGTIAMNGVPVLpnsp 325
Cdd:PRK13545 24 LKDLF----FRSKDGEYHYA------LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAAL---- 89
|
....*...
gi 81855249 326 hAAIVAGI 333
Cdd:PRK13545 90 -IAISSGL 96
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
22-224 |
1.63e-03 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 40.16 E-value: 1.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 22 LDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSG--PDTGTVRHGSTPIVFGEPRDSHRAGIRVIHQEPEIVPNltVA 99
Cdd:PRK09580 17 LRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDyeVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPG--VS 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 100 ENIFvgelprLAGVLLDWRKLEEQT--DRV---------LATFGMQQDMRPRQLCGTLGPAQRQMIEIMRAIRAGGRLIA 168
Cdd:PRK09580 95 NQFF------LQTALNAVRSYRGQEplDRFdfqdlmeekIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCI 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 81855249 169 FDEPTSSLTDDEARRLFSVVRRLREKGTSIIYISHrLNEIIDL--ADRIVVLRDGRLV 224
Cdd:PRK09580 169 LDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTH-YQRILDYikPDYVHVLYQGRIV 225
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
392-479 |
1.78e-03 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 40.29 E-value: 1.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 392 LDEQVSKLSGGNQQKVVLARWLARQ---PMLLILDEPTRGIDIgakAEIYRLID---ELAASGIGIILISSEMpELIGLA 465
Cdd:cd03271 163 LGQPATTLSGGEAQRIKLAKELSKRstgKTLYILDEPTTGLHF---HDVKKLLEvlqRLVDKGNTVVVIEHNL-DVIKCA 238
|
90 100
....*....|....*....|
gi 81855249 466 DRVLVM------AGGRITAE 479
Cdd:cd03271 239 DWIIDLgpeggdGGGQVVAS 258
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
8-63 |
2.72e-03 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 40.54 E-value: 2.72e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 81855249 8 SLDGISKRFGVVQALDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTV 63
Cdd:PRK10636 314 KMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEI 369
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
399-473 |
2.94e-03 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 40.12 E-value: 2.94e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 81855249 399 LSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDElaasgIGIILIS-SEMPELIGLADRVLVMAG 473
Cdd:TIGR00954 583 LSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE-----FGITLFSvSHRKSLWKYHEYLLYMDG 653
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
392-469 |
3.11e-03 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 40.58 E-value: 3.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 392 LDEQVSKLSGGNQQKVVLARWLARQPM--LLILDEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEmPELIGLADRVL 469
Cdd:PRK00635 470 PERALATLSGGEQERTALAKHLGAELIgiTYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHD-EQMISLADRII 548
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
31-219 |
3.32e-03 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 38.12 E-value: 3.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 31 PGEVLALVGENGAGKSTMMRILEGVSGPDTGTVrhgstpivfgeprdshragirvihqepeivpnltvaeniFVGELPRL 110
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGV---------------------------------------IYIDGEDI 41
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 111 AGVLLDWRKLEEQTDRVLATFGMQQdmrprqlcgtlgpaQRQMIEIMRAIRAGgrLIAFDEPTSSLTDDEARRLFSVVR- 189
Cdd:smart00382 42 LEEVLDQLLLIIVGGKKASGSGELR--------------LRLALALARKLKPD--VLILDEITSLLDAEQEALLLLLEEl 105
|
170 180 190
....*....|....*....|....*....|....*
gi 81855249 190 -----RLREKGTSIIYISHRLNEIIDLADRIVVLR 219
Cdd:smart00382 106 rllllLKSEKNLTVILTTNDEKDLGPALLRRRFDR 140
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
22-63 |
3.57e-03 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 38.70 E-value: 3.57e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 81855249 22 LDNVSIAFRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTV 63
Cdd:PRK13541 16 LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNI 57
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
395-473 |
4.63e-03 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 38.32 E-value: 4.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81855249 395 QVSKLSGGNQQKVVLARWLARQPMLLILDEPTRGIDIGAKAEIYRLIDELAASGIGIIL-ISSEMPELIGLADRVLVMAG 473
Cdd:cd03222 68 QYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALvVEHDLAVLDYLSDRIHVFEG 147
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
420-468 |
5.02e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 39.64 E-value: 5.02e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 81855249 420 LILDEPTRGIDIGAKAEIYRLIDELAASGIGIILISSEMPELIGLADRV 468
Cdd:PRK02224 815 LILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVGAADDL 863
|
|
| PRK01889 |
PRK01889 |
GTPase RsgA; Reviewed |
18-64 |
7.05e-03 |
|
GTPase RsgA; Reviewed
Pssm-ID: 234988 [Multi-domain] Cd Length: 356 Bit Score: 38.76 E-value: 7.05e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 81855249 18 VVQALDNVSIA-----FRPGEVLALVGENGAGKSTMMRILEGVSGPDTGTVR 64
Cdd:PRK01889 176 AVSALDGEGLDvlaawLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVR 227
|
|
| |
