|
Name |
Accession |
Description |
Interval |
E-value |
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
469-682 |
1.59e-16 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 80.96 E-value: 1.59e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 469 LEAECTSLNQELQDMEVRarrgQKKAPDEANQviQIQAWQDEVDRARQGQRDAEEKLSLMEAEMQKLRVEMAAMK----- 543
Cdd:pfam09787 66 LRGQIQQLRTELQELEAQ----QQEEAESSRE--QLQELEEQLATERSARREAEAELERLQEELRYLEEELRRSKatlqs 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 544 ----RDAE-----------HYSRQEHTELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEVKRLHEAQVEVEKSRV 608
Cdd:pfam09787 140 rikdREAEieklrnqltskSQSSSSQSELENRLHQLTETLIQKQTMLEALSTEKNSLVLQLERMEQQIKELQGEGSNGTS 219
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 85681038 609 SRRASATWEEDSEIKTLEPL-PLYHRHMATASTQLQNAVKLLDSGAVRATRFLWRYPIARMFLLFYLVFVHLFLM 682
Cdd:pfam09787 220 INMEGISDGEGTRLRNVPGLfSESDSDRAGMYGKVRKAASVIDKFSIRLGIFLRRYPIARLFVIIYMGLLHLWVM 294
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
241-594 |
9.72e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.42 E-value: 9.72e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 241 TSTNLKREQDRRADttsmkIQDQLEEaqglLKAtvstgQSKEARLARVcagLSSRLQEIKAEnAQLEELLTAEQELTKsY 320
Cdd:COG1196 184 TEENLERLEDILGE-----LERQLEP----LER-----QAEKAERYRE---LKEELKELEAE-LLLLKLRELEAELEE-L 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 321 EASIRHLQKDLSAAKSEVTKVEssmvEALAAKNSEIETLVSAMDALKNQAALNEGKLSSLQGDMESIMRNRELAETRMMQ 400
Cdd:COG1196 245 EAELEELEAELEELEAELAELE----AELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 401 ALREELATTERRA--EEERSAHNATKMAAMERERELEHRAVDASTALVRIQRIADERTAKVADFEQKVALLEAECTSLNQ 478
Cdd:COG1196 321 LEEELAELEEELEelEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAA 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 479 ELQDMEVRARRGQKKAPDEANQVIQIQAWQDEVDRARQGQRDAEEKLSLMEAEMQKLRVEMAAMKRDAEHYSRQEHTELE 558
Cdd:COG1196 401 QLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALA 480
|
330 340 350
....*....|....*....|....*....|....*.
gi 85681038 559 KRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEVK 594
Cdd:COG1196 481 ELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLL 516
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
355-621 |
1.96e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.65 E-value: 1.96e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 355 EIETLVSAMDALKNQAALNEGKLSSLQGDMESIMRNRELAETRMmQALREELATTERRAEEERSAHNATKMAAMEREREL 434
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAEL-EELRLELEELELELEEAQAEEYELLAELARLEQDI 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 435 EHRAVDASTALVRIQRIADER---TAKVADFEQKVALLEAECTSLNQELQDMEVRARRGQKKapdEANQVIQIQAWQDEV 511
Cdd:COG1196 305 ARLEERRRELEERLEELEEELaelEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA---LLEAEAELAEAEEEL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 512 DRARQGQRDAEEKLSLMEAEMQKLRVEMAAMKRDAEHYSRQEHTELEKRYRELTDLLYYKQTQLEtmASEKAAAEFQLEK 591
Cdd:COG1196 382 EELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE--AAEEEAELEEEEE 459
|
250 260 270
....*....|....*....|....*....|
gi 85681038 592 EVKRLHEAQVEVEKSRVSRRASATWEEDSE 621
Cdd:COG1196 460 ALLELLAELLEEAALLEAALAELLEELAEA 489
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
283-607 |
1.54e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.69 E-value: 1.54e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 283 ARLARVCAGLSSRLQEIKAENAQLEELLTAEQELTKSYEASIRHLQKDLSAAKSEVTKVESSmVEALAAKNSEIETLVSA 362
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE-VEQLEERIAQLSKELTE 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 363 mdaLKNQAALNEGKLSSLQGDMESIMRNRELAETRMmQALREELATTERRAEEERSAHNATKMAA---MERERELEHRAV 439
Cdd:TIGR02168 759 ---LEAEIEELEERLEEAEEELAEAEAEIEELEAQI-EQLKEELKALREALDELRAELTLLNEEAanlRERLESLERRIA 834
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 440 DASTALVRIQRIADERTAKVADFEQKVALLEAECTSLNQELQDMEV------RARRGQKKAPDEANQviQIQAWQDEVDR 513
Cdd:TIGR02168 835 ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNerasleEALALLRSELEELSE--ELRELESKRSE 912
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 514 ARQGQRDAEEKLSLMEAEMQKLRVEMAAMK-RDAEHYSR--QEHTELEKRYRELTDLLYYKQTQLETMASE------KAA 584
Cdd:TIGR02168 913 LRRELEELREKLAQLELRLEGLEVRIDNLQeRLSEEYSLtlEEAEALENKIEDDEEEARRRLKRLENKIKElgpvnlAAI 992
|
330 340
....*....|....*....|....
gi 85681038 585 AEFQLEKEVKRLHEAQVE-VEKSR 607
Cdd:TIGR02168 993 EEYEELKERYDFLTAQKEdLTEAK 1016
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
245-514 |
1.65e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.57 E-value: 1.65e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 245 LKREQDRRADTTSMKIQDQLEEAQGLLKATVSTGQSKEARLARVC---AGLSSRLQEIKAENAQLEELLTAEQELTKSYE 321
Cdd:COG1196 264 ELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEerrRELEERLEELEEELAELEEELEELEEELEELE 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 322 ASIRHLQKDLSAAKSEVTKVESSMVEALAAKNSEIETLVSAMDALKNQAALNEGKLSSLQGDMESIMRNRELAETRmmQA 401
Cdd:COG1196 344 EELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERL--EE 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 402 LREELATTERRAEEERSAHNATKMAAMERERELEHRAVDASTALVRIQRIADERTAKVADFEQKVALLEAECTSLNQELQ 481
Cdd:COG1196 422 ELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEA 501
|
250 260 270
....*....|....*....|....*....|....*...
gi 85681038 482 DME-----VRARRGQKKAPDEANQVIQIQAWQDEVDRA 514
Cdd:COG1196 502 DYEgflegVKAALLLAGLRGLAGAVAVLIGVEAAYEAA 539
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
264-607 |
4.23e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 4.23e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 264 LEEAQGLLKATVstgQSKEA--RLARVCAGLSsRLQEIKAE-NAQLEEL-LTAEQ-ELTKSYEASIRHLQKDLSAAKSEv 338
Cdd:TIGR02168 161 FEEAAGISKYKE---RRKETerKLERTRENLD-RLEDILNElERQLKSLeRQAEKaERYKELKAELRELELALLVLRLE- 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 339 tkvesSMVEALAAKNSEIETLVSAMDALKNQAALNEGKLSSLQGDMESiMRNRELAETRMMQALREELATTERRAEEERs 418
Cdd:TIGR02168 236 -----ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSE-LEEEIEELQKELYALANEISRLEQQKQILR- 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 419 ahnatkmaamERERELEHRAVDASTALVRIQRIADERTAKVADFEQKVALLEAECTSLNQELQDMEvRARRGQKKAPDEA 498
Cdd:TIGR02168 309 ----------ERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELE-AELEELESRLEEL 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 499 NQviQIQAWQDEVDRARQGQRDAEEKLSLMEAEMQKLRVEMAAMKRD-AEHYSRQEHTELEKRYRELTDLlyykQTQLET 577
Cdd:TIGR02168 378 EE--QLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEiEELLKKLEEAELKELQAELEEL----EEELEE 451
|
330 340 350
....*....|....*....|....*....|
gi 85681038 578 MASEKAAAEFQLEKEVKRLHEAQVEVEKSR 607
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALDAAE 481
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
242-560 |
4.25e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.16 E-value: 4.25e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 242 STNLKREQDRRADTTSMK-IQDQLEEAQGLLKA--------TVSTGQSKEARLARVCAGLSSRLQEIKAENAQLEELL-T 311
Cdd:TIGR02169 197 RQQLERLRREREKAERYQaLLKEKREYEGYELLkekealerQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLeE 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 312 AEQELTKSYEASIRHLQKDLSAAKSEVTKVESSmveaLAAKNSEIETLVSAMDALKNQAALNEGKLSSLQGDMESIMRNR 391
Cdd:TIGR02169 277 LNKKIKDLGEEEQLRVKEKIGELEAEIASLERS----IAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRR 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 392 ELAETRMmQALREELATTERRAEEERSAHNATKMAAMERERELE---HRAVDASTALVRIQRIADERTAKVADFEQKVAL 468
Cdd:TIGR02169 353 DKLTEEY-AELKEELEDLRAELEEVDKEFAETRDELKDYREKLEklkREINELKRELDRLQEELQRLSEELADLNAAIAG 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 469 LEAECTSLNQELQDM--EVRARRGqkkapdeanqviQIQAWQDEVDRARQGQRDAEEKLSLMEAEMQKLRVEMAAMK--- 543
Cdd:TIGR02169 432 IEAKINELEEEKEDKalEIKKQEW------------KLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEaqa 499
|
330 340
....*....|....*....|
gi 85681038 544 ---RDAEHYSRQEHTELEKR 560
Cdd:TIGR02169 500 rasEERVRGGRAVEEVLKAS 519
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
261-484 |
8.24e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.83 E-value: 8.24e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 261 QDQLEEAQGLLKATVSTGQSKEARLARVCAGLSSRLQEIKAENAQLEEL---LTAEQELTKSYEASIRHLQKDLSAAKSE 337
Cdd:TIGR02168 280 EEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELeskLDELAEELAELEEKLEELKEELESLEAE 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 338 VTKVESSMVEA---LAAKNSEIETLVSAMDALKNQAALNEGKLSSLQGDMESIMRNRElaetrmmqALREELATTERRAE 414
Cdd:TIGR02168 360 LEELEAELEELesrLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRE--------RLQQEIEELLKKLE 431
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 85681038 415 EERSAHNATKMAAMERERE-LEHRAVDASTALVRIQRIADERTAKVADFEQKVALLEAECTSLNQELQDME 484
Cdd:TIGR02168 432 EAELKELQAELEELEEELEeLQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLE 502
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
232-646 |
1.04e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.53 E-value: 1.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 232 KEQEPKVPVTSTNLKREQDRRADTTSMKIQDQLEEAQGLLKATVSTGQSKEARLARVCAGLSSRLQEIKAENAQLEELLT 311
Cdd:PTZ00121 1372 KKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKK 1451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 312 AEQELTKSYEASIRHLQK----DLSAAKSEVTKVESSMVEALAAKNsEIETLVSAMDALKNQAALNEGKLSSLQGDMESI 387
Cdd:PTZ00121 1452 KAEEAKKAEEAKKKAEEAkkadEAKKKAEEAKKADEAKKKAEEAKK-KADEAKKAAEAKKKADEAKKAEEAKKADEAKKA 1530
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 388 MRNRELAETRMMQALREelATTERRAEEERSAHNATKMAAMERERELEHRAVDASTALVRIQRIADERTAKVADFEQKVA 467
Cdd:PTZ00121 1531 EEAKKADEAKKAEEKKK--ADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMK 1608
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 468 LLEAEctslnqelQDMEVRARRGQ-KKAPDEANQVIQIQAWQDEVDRARQGQRDAEEKLSLMEAEMQKLRVEMAAMKRDA 546
Cdd:PTZ00121 1609 AEEAK--------KAEEAKIKAEElKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEA 1680
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 547 EHYSRQEHTELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEVKRLHEAQVEVEKSRVSRRASATWEEDSEIKTLE 626
Cdd:PTZ00121 1681 KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIA 1760
|
410 420
....*....|....*....|
gi 85681038 627 PLPLYHRHMATASTQLQNAV 646
Cdd:PTZ00121 1761 HLKKEEEKKAEEIRKEKEAV 1780
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
295-555 |
5.24e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 5.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 295 RLQEIKAENAQLEELLTAEQELTKSYEASIRHLQKDLSAAKSEVTKVESSMVEA---LAAKNSEIETLVSAMDALKNQAA 371
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELqkeLYALANEISRLEQQKQILRERLA 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 372 LNEGKLSSLQGDMESIMRNRELAETR--MMQALREELATTERRAEEERSAHNATKMAAMERERELEHRavdastalvriq 449
Cdd:TIGR02168 313 NLERQLEELEAQLEELESKLDELAEElaELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQ------------ 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 450 riADERTAKVADFEQKVALLEAECTSLNQELQDMEVRARRGQ--KKAPDEANQVIQIQAWQDEVDRARQGQRDAEEKLSL 527
Cdd:TIGR02168 381 --LETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQqeIEELLKKLEEAELKELQAELEELEEELEELQEELER 458
|
250 260
....*....|....*....|....*...
gi 85681038 528 MEAEMQKLRVEMAAMKRDAEHYSRQEHT 555
Cdd:TIGR02168 459 LEEALEELREELEEAEQALDAAERELAQ 486
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
300-621 |
9.04e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.45 E-value: 9.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 300 KAENAQLEELLTAEQELTKSYEA-SIRHLQKDLSAAKSE-VTKVESSMVEALAAKNSE---IETLVSAMDALKNQAALNE 374
Cdd:PTZ00121 1105 KTETGKAEEARKAEEAKKKAEDArKAEEARKAEDARKAEeARKAEDAKRVEIARKAEDarkAEEARKAEDAKKAEAARKA 1184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 375 gklsslqgdmESIMRNREL---AETRMMQALREelATTERRAEEERSAHNATKMAAMERERELEHRAVDASTA--LVRIQ 449
Cdd:PTZ00121 1185 ----------EEVRKAEELrkaEDARKAEAARK--AEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAeeERNNE 1252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 450 RIADERTAKVADFEQKVALLEAECTSLNQELQDMEvrarrgQKKAPDEANQviqiqawQDEVDRARQGQRDAEEKlslME 529
Cdd:PTZ00121 1253 EIRKFEEARMAHFARRQAAIKAEEARKADELKKAE------EKKKADEAKK-------AEEKKKADEAKKKAEEA---KK 1316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 530 AEMQKLRVEMAAMKRDAehySRQEHTELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEVKRLHEAQVEVEKSRVS 609
Cdd:PTZ00121 1317 ADEAKKKAEEAKKKADA---AKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKA 1393
|
330
....*....|..
gi 85681038 610 RRASATWEEDSE 621
Cdd:PTZ00121 1394 DEAKKKAEEDKK 1405
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
296-605 |
1.12e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.99 E-value: 1.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 296 LQEIKAENAQLEELLTAEQELTKsyEASIRHLQKdLSAAKSEVTKVESSMVEALAAKNSEIETLVSAMDALKN------- 368
Cdd:PRK03918 364 YEEAKAKKEELERLKKRLTGLTP--EKLEKELEE-LEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKakgkcpv 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 369 -QAALNE----GKLSSLQGDMESIMRNRELAETRMMQALRE------------------ELATTERRAEEERSAHNATKM 425
Cdd:PRK03918 441 cGRELTEehrkELLEEYTAELKRIEKELKEIEEKERKLRKElrelekvlkkeseliklkELAEQLKELEEKLKKYNLEEL 520
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 426 AAMERE-RELEHRAVDASTALVRIQriadERTAKVADFEQKVALLEAECTSLNQELQDMEVRARRGQKKAPDEANQVIQ- 503
Cdd:PRK03918 521 EKKAEEyEKLKEKLIKLKGEIKSLK----KELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKe 596
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 504 -----------------IQAWQDEVDRARQGQRDAEEKLSLMEAEMQKLRVEMAAMKRDaehYSRQEHTELEKRYRELTD 566
Cdd:PRK03918 597 lepfyneylelkdaekeLEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKK---YSEEEYEELREEYLELSR 673
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 85681038 567 LLYYKQTQLETMASEKAAAEFQLEK---EVKRLHEAQVEVEK 605
Cdd:PRK03918 674 ELAGLRAELEELEKRREEIKKTLEKlkeELEEREKAKKELEK 715
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
261-490 |
1.19e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 1.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 261 QDQLEEAQGLLKATVSTGQSKEARLARvcagLSSRLQEIKAENAQLEELLTAEQELTKSYEASIRHLQKDLSAAKSEVTK 340
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAA----LKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 341 VEssmvEALAAKNSEIETLVSAMDALKNQAAL-------NEGKLSSLQGDMESIMRNRElAETRMMQALREELATTERRA 413
Cdd:COG4942 95 LR----AELEAQKEELAELLRALYRLGRQPPLalllspeDFLDAVRRLQYLKYLAPARR-EQAEELRADLAELAALRAEL 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 85681038 414 EEERSAHNATKMAAMERERELEHRAVDASTALVRIQRIADERTAKVADFEQKVALLEAECTSLNQELQDMEVRARRG 490
Cdd:COG4942 170 EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
246-605 |
1.77e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.48 E-value: 1.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 246 KREQDRRADTTSMKIQDQLEEAQGLLKATVSTGQSKEARLARVCAGLSSRLQEIKAENAQLEELLTAEQELTKSYEASIR 325
Cdd:COG1196 401 QLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALA 480
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 326 HLQKDLSAAKSEvtkveSSMVEALAAKNSEIETLVSAMDALKNQAALnEGKLSSLQGDMESIMRNRELAETRMMQALREE 405
Cdd:COG1196 481 ELLEELAEAAAR-----LLLLLEAEADYEGFLEGVKAALLLAGLRGL-AGAVAVLIGVEAAYEAALEAALAAALQNIVVE 554
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 406 LATTERRAEEERSAHNA---------------------TKMAAMERERELEHRAVDASTALVRIQRIADERTAKVADFEQ 464
Cdd:COG1196 555 DDEVAAAAIEYLKAAKAgratflpldkiraraalaaalARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEA 634
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 465 KVALLEAECTSLNQELQDMEVRARRGQKkapdEANQVIQIQAWQDEVDRARQGQRDAEEKLSLMEAEMQKLRVEMAAMKR 544
Cdd:COG1196 635 ALRRAVTLAGRLREVTLEGEGGSAGGSL----TGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELA 710
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 85681038 545 DAEHYSRQEHTELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEVKRLHEAQVEVEK 605
Cdd:COG1196 711 EAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELER 771
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
228-548 |
2.18e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.27 E-value: 2.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 228 INLEKEQEPKV-------PVTSTNLKREQDRRadttSMKIQdqleEAQGLLKATVSTGQSKEARLARVCAGLSSRLQEIK 300
Cdd:pfam15921 393 LSLEKEQNKRLwdrdtgnSITIDHLRRELDDR----NMEVQ----RLEALLKAMKSECQGQMERQMAAIQGKNESLEKVS 464
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 301 AENAQLEelltAEQELTKSYEASIRHLQKDLSAAKSEVTKVESSMVE---ALAAKNSEIETLVSAMDA--LKNQAALNEG 375
Cdd:pfam15921 465 SLTAQLE----STKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEkerAIEATNAEITKLRSRVDLklQELQHLKNEG 540
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 376 K-LSSLQGDMESiMRNRELAETRMMQALREELATTERRAEEersaHNATKMAAMERERELEHRAVDASTALVRIQRIADE 454
Cdd:pfam15921 541 DhLRNVQTECEA-LKLQMAEKDKVIEILRQQIENMTQLVGQ----HGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDK 615
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 455 RTAKVADFEQKVALLEAECTSLNQELQDmEVRARRGQKKAPDEAnqVIQIQAWQDEVDRARQG----QRDAEEKLSLMEA 530
Cdd:pfam15921 616 KDAKIRELEARVSDLELEKVKLVNAGSE-RLRAVKDIKQERDQL--LNEVKTSRNELNSLSEDyevlKRNFRNKSEEMET 692
|
330
....*....|....*...
gi 85681038 531 EMQKLRVEMAAMKRDAEH 548
Cdd:pfam15921 693 TTNKLKMQLKSAQSELEQ 710
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
403-626 |
4.34e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.44 E-value: 4.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 403 REELATTERRAEEERSAHNATKMAAMERERELEHRAVDASTALVRIQRIADERTAKVADFEQKVALLEAECTSLNQELQD 482
Cdd:TIGR02168 241 LEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 483 MEVRARRGQKKaPDEAnqviqiqawQDEVDRARQGQRDAEEKLSLMEAEMQKLRVEMAAMKRdAEHYSRQEHTELEKRYR 562
Cdd:TIGR02168 321 LEAQLEELESK-LDEL---------AEELAELEEKLEELKEELESLEAELEELEAELEELES-RLEELEEQLETLRSKVA 389
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 85681038 563 ELTDLLYYKQTQLETMASEKAaaefQLEKEVKRLHEAQVEVEKSRVSRRASATWEEDSEIKTLE 626
Cdd:TIGR02168 390 QLELQIASLNNEIERLEARLE----RLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEEL 449
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
279-450 |
7.71e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 7.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 279 QSKEARLARVCAGLSSRLQEIKAENAQLEELLTAEQELTKSYEASIRH--LQKDLSAAKSEVTKVESSMVEaLAAKNSEI 356
Cdd:COG4913 616 EAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVasAEREIAELEAELERLDASSDD-LAALEEQL 694
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 357 ETLVSAMDALKNQAALNEGKLSSLQGDMESIMRNRELAETR-----MMQALREELATTERRAEEERSAHNATKMAAMERE 431
Cdd:COG4913 695 EELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRleaaeDLARLELRALLEERFAAALGDAVERELRENLEER 774
|
170 180
....*....|....*....|
gi 85681038 432 RE-LEHRAVDASTALVRIQR 450
Cdd:COG4913 775 IDaLRARLNRAEEELERAMR 794
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
246-618 |
8.29e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.37 E-value: 8.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 246 KREQDRRA-DTTSMKIQDQLEEAQGLLKATVSTgQSKEARLARVCAGLSSRLQEIKAENAQLEELLTAEQELTKSYEASI 324
Cdd:PTZ00121 1141 KAEEARKAeDAKRVEIARKAEDARKAEEARKAE-DAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARK 1219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 325 RHLQKDLSaaksEVTKVESSMVEALAAKNSEIETLvsamdalknqaalNEGKLSSLQGDMESIMRNRELA---ETRMMQA 401
Cdd:PTZ00121 1220 AEDAKKAE----AVKKAEEAKKDAEEAKKAEEERN-------------NEEIRKFEEARMAHFARRQAAIkaeEARKADE 1282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 402 LREelATTERRAEEERSAHNATKMAAMERERELEHRAVDASTALVRIQRIADERTAKVADFEQKVALLEAECTSLNQELQ 481
Cdd:PTZ00121 1283 LKK--AEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAE 1360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 482 DMEVRARRGQKKAPDEANQVIQIQAWQDEVDRARQGQRDAEEKL----SLMEAEMQKLRVEMAamKRDAEHYSRQEhtEL 557
Cdd:PTZ00121 1361 AAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKkkadELKKAAAAKKKADEA--KKKAEEKKKAD--EA 1436
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 85681038 558 EKRYRELTdllyyKQTQLETMASEKAAAEFQLEK--EVKRLHEAQVEVEKSRVSRRASATWEE 618
Cdd:PTZ00121 1437 KKKAEEAK-----KADEAKKKAEEAKKAEEAKKKaeEAKKADEAKKKAEEAKKADEAKKKAEE 1494
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
348-614 |
1.59e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 1.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 348 ALAAKNSEIETLVSAMDALKNQAALNEGKLSSLQGDMESIMRNRELAETRMmQALREELATTERRAEEERSAHNATKMAA 427
Cdd:COG4942 14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRI-AALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 428 MERERELEHRAVDASTALVRIQRIADERTAKVadfeqkvaLLEAEctslnqELQDMEVRARRGQKKAPDEANQVIQIQAW 507
Cdd:COG4942 93 AELRAELEAQKEELAELLRALYRLGRQPPLAL--------LLSPE------DFLDAVRRLQYLKYLAPARREQAEELRAD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 508 QDEVDRARQGQRDAEEKLSLMEAEMQKLRVEMAAMKRDAEhysrQEHTELEKRyreltdllyykQTQLETMASEKAAAEF 587
Cdd:COG4942 159 LAELAALRAELEAERAELEALLAELEEERAALEALKAERQ----KLLARLEKE-----------LAELAAELAELQQEAE 223
|
250 260
....*....|....*....|....*..
gi 85681038 588 QLEKEVKRLHEAQVEVEKSRVSRRASA 614
Cdd:COG4942 224 ELEALIARLEAEAAAAAERTPAAGFAA 250
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
258-603 |
2.50e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.76 E-value: 2.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 258 MKIQDQLEEAQGLLKATVSTGQSKEARLARVCAGLSSRLQEIKAENAQLEELLTAEQELTKSYEASIRH-----LQKDLS 332
Cdd:TIGR02169 722 EKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHsripeIQAELS 801
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 333 AAKSEVTKVESSMVEALAAKN----------SEIETLVSAMDALKNQAALNEGKLSSLQGDMESImrNRELAETrmmQAL 402
Cdd:TIGR02169 802 KLEEEVSRIEARLREIEQKLNrltlekeyleKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEEL--EEELEEL---EAA 876
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 403 REELATTERRAEEERSAHNATKMAAMERERELEhravdastalvriqriadertAKVADFEQKVALLEAECTSLNQELQD 482
Cdd:TIGR02169 877 LRDLESRLGDLKKERDELEAQLRELERKIEELE---------------------AQIEKKRKRLSELKAKLEALEEELSE 935
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 483 MEVRARRGQKKAPDEANqviqiqawqdevdrarqgQRDAEEKLSLMEAEMQKLR-VEMAAMkrdaehysrQEHTELEKRY 561
Cdd:TIGR02169 936 IEDPKGEDEEIPEEELS------------------LEDVQAELQRVEEEIRALEpVNMLAI---------QEYEEVLKRL 988
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 85681038 562 RELtdllyykQTQLETMASEKAAAEFQLEKEVKRLHEAQVEV 603
Cdd:TIGR02169 989 DEL-------KEKRAKLEEERKAILERIEEYEKKKREVFMEA 1023
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
229-566 |
2.56e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.83 E-value: 2.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 229 NLEKEQEPKVPVTSTNLKREQDRRADTTSMKIQDQLEEAQGLLKATVSTGQSKEARLA---RVCAGLSSRLQEIKAENAQ 305
Cdd:PTZ00121 1461 EAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAeeaKKADEAKKAEEAKKADEAK 1540
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 306 LEELLTAEQELTKSYEASIRHLQKDLSAAKSEVTKVESSMVEALAAKNSE---IETLVSAMDALKNQAALNEGKLSSLQG 382
Cdd:PTZ00121 1541 KAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEearIEEVMKLYEEEKKMKAEEAKKAEEAKI 1620
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 383 DMESIMRNRElaETRMMQALREELATTERRAEEERSA--HNATKMAAMERERELEHRAVDASTALVRIQRIADERTAKVA 460
Cdd:PTZ00121 1621 KAEELKKAEE--EKKKVEQLKKKEAEEKKKAEELKKAeeENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEA 1698
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 461 DFEQKVALL---EAECTSLNQELQDME----VRARRGQKKAPDEANQVIQIQAWQDEVDRARQGQRDAEEKLSLMEAEMQ 533
Cdd:PTZ00121 1699 EEAKKAEELkkkEAEEKKKAEELKKAEeenkIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKE 1778
|
330 340 350
....*....|....*....|....*....|...
gi 85681038 534 klrvemAAMKRDAEHYSRQEHTELEKRYRELTD 566
Cdd:PTZ00121 1779 ------AVIEEELDEEDEKRRMEVDKKIKDIFD 1805
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
399-645 |
5.87e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.59 E-value: 5.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 399 MQALREELATTERRAEE-ERSAHNATKMAAMERE--RELEHRAVDASTALVRIQRIADERTAKVADFEQKVALLEAECTS 475
Cdd:TIGR02168 672 ILERRREIEELEEKIEElEEKIAELEKALAELRKelEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 476 LNQELQDMEVrarrgqkkapdeanqviQIQAWQDEVDrarqgqrDAEEKLSLMEAEMQKLRVEMAAMKRDAEHySRQEHT 555
Cdd:TIGR02168 752 LSKELTELEA-----------------EIEELEERLE-------EAEEELAEAEAEIEELEAQIEQLKEELKA-LREALD 806
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 556 ELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEVKRLHEAQVEVEKSRVSRRASATWEEDSEIKTLEPLPLY---H 632
Cdd:TIGR02168 807 ELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERaslE 886
|
250
....*....|...
gi 85681038 633 RHMATASTQLQNA 645
Cdd:TIGR02168 887 EALALLRSELEEL 899
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
245-583 |
8.66e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.08 E-value: 8.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 245 LKREQDRRADTTSMKIQDQLEEAQGLLKATVSTGQSKEARLARVCAGLSSRLQEIKAENAQLEELLTA--EQELTKSYEA 322
Cdd:COG1196 479 LAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAalQNIVVEDDEV 558
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 323 SIRHLQKDLSAAKSEVTKVESSMVEALAAKNSEIETLVSAMDALKNQAALNEGKLSSLQGDMESIMRNRELAETRMMQAL 402
Cdd:COG1196 559 AAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRR 638
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 403 REELATTERRAEEERSAHNATKMAAMERERELEHRAVDASTALVRI-QRIADERTAKVADFEQKVALLEAECTSLNQELQ 481
Cdd:COG1196 639 AVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELaERLAEEELELEEALLAEEEEERELAEAEEERLE 718
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 482 DMEVRARRGQKKAPDEANQVIQIQAWQDEVDRARQGQRDAEEKLSLMEAEMQKLRVEMAAMKR---DAEhysrQEHTELE 558
Cdd:COG1196 719 EELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGPvnlLAI----EEYEELE 794
|
330 340
....*....|....*....|....*
gi 85681038 559 KRYRELTdllyykqTQLETMASEKA 583
Cdd:COG1196 795 ERYDFLS-------EQREDLEEARE 812
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
354-626 |
3.35e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.96 E-value: 3.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 354 SEIETLVSAMDALKNQAALNEGKLSSLQGDMES-IMRNRELAETRMMQALRE-ELATTERRAEEERSA--HNATKMAAME 429
Cdd:pfam17380 266 TENEFLNQLLHIVQHQKAVSERQQQEKFEKMEQeRLRQEKEEKAREVERRRKlEEAEKARQAEMDRQAaiYAEQERMAME 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 430 RERELEH-RAVDASTALVRI--QRIA-------------------DERTAKVADFEQKVALLEAECTSLNQELQDMEVRA 487
Cdd:pfam17380 346 RERELERiRQEERKRELERIrqEEIAmeisrmrelerlqmerqqkNERVRQELEAARKVKILEEERQRKIQQQKVEMEQI 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 488 RRGQKKAPDEANQVIQiQAWQDEVDRARQGQRDAE---EKLSLMEAEMQKLRVEMAAMKRDAEHYSRQEHTELEKRYRE- 563
Cdd:pfam17380 426 RAEQEEARQREVRRLE-EERAREMERVRLEEQERQqqvERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEEr 504
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 85681038 564 ----LTDLLYYKQTQLETMASEKAAAEFQLEKEVKRLHEAQVEV-EKSRVSRRASATWEEDSEIKTLE 626
Cdd:pfam17380 505 kqamIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMeERRRIQEQMRKATEERSRLEAME 572
|
|
| PTZ00491 |
PTZ00491 |
major vault protein; Provisional |
244-349 |
3.68e-04 |
|
major vault protein; Provisional
Pssm-ID: 240439 [Multi-domain] Cd Length: 850 Bit Score: 43.85 E-value: 3.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 244 NLKREQDRRADTTSMKIQDQLE---------EAQGLLKATVSTGQSK-------EARLARV-----CAGLSSRLQEIKAE 302
Cdd:PTZ00491 672 AELLEQEARGRLERQKMHDKAKaeeqrtkllELQAESAAVESSGQSRaealaeaEARLIEAeaeveQAELRAKALRIEAE 751
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 85681038 303 nAQLEeLLTAEQELTKSYEASIRHL--QKDLSAAKSEVTKVEsSMVEAL 349
Cdd:PTZ00491 752 -AELE-KLRKRQELELEYEQAQNELeiAKAKELADIEATKFE-RIVEAL 797
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
295-599 |
3.76e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.17 E-value: 3.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 295 RLQEIKAEnaqLEELLTAEQELTKSYEASIRHLQKDLSAAK---------------SEVTKVESSMVEALAAKNSEIETL 359
Cdd:COG3096 307 RLVEMARE---LEELSARESDLEQDYQAASDHLNLVQTALRqqekieryqedleelTERLEEQEEVVEEAAEQLAEAEAR 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 360 VSA----MDALKNQAALNEGKLSSLQgdmesimrNRELAETRMMQALRE-----ELAT-TERRAEEERSAHNATKMAAME 429
Cdd:COG3096 384 LEAaeeeVDSLKSQLADYQQALDVQQ--------TRAIQYQQAVQALEKaralcGLPDlTPENAEDYLAAFRAKEQQATE 455
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 430 RERELEHRAVDAST-------ALVRIQRIADERTAKVAdFEQKVALLE---------AECTSLNQELQDMEVRARRgQKK 493
Cdd:COG3096 456 EVLELEQKLSVADAarrqfekAYELVCKIAGEVERSQA-WQTARELLRryrsqqalaQRLQQLRAQLAELEQRLRQ-QQN 533
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 494 APDEANQVIQ---------------IQAWQDEVDRARQGQRDAEEKLSLMEAEMQKLRVEMAAMKRDA----------EH 548
Cdd:COG3096 534 AERLLEEFCQrigqqldaaeeleelLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARApawlaaqdalER 613
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 85681038 549 YSRQEHTELEKRyRELTDLLYY---KQTQLETMASEKAAAEFQLEKEVKRLHEA 599
Cdd:COG3096 614 LREQSGEALADS-QEVTAAMQQlleREREATVERDELAARKQALESQIERLSQP 666
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
285-431 |
4.27e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 43.03 E-value: 4.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 285 LARVCAGLSSRLQEIKAENAQLEELLTAEQELTKSYEASIRHLQKDLSAAKSEVTKVESSMVEALAaknseietlvsAMD 364
Cdd:PRK09039 44 LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAG-----------AGA 112
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 85681038 365 ALKNQAALNEGKLSSLQGDMESIMRNRELAeTRMMQALREELATTER--RAEEERSAHNATKMAAMERE 431
Cdd:PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELL-NQQIAALRRQLAALEAalDASEKRDRESQAKIADLGRR 180
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
250-591 |
4.40e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.49 E-value: 4.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 250 DRRADTTSMK--IQDQLEEAQGLLKATVSTGQSKEARLARvcagLSSRLQEIKAENAQLEELLTAEQELTKSYEASIRHL 327
Cdd:PRK02224 314 ARREELEDRDeeLRDRLEECRVAAQAHNEEAESLREDADD----LEERAEELREEAAELESELEEAREAVEDRREEIEEL 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 328 QKDLSAAKSEVTKVE------SSMVEALAAKNSEIE--------TLVSAMDAL-KNQAALNEGKLSSLQGDMESIMRNRE 392
Cdd:PRK02224 390 EEEIEELRERFGDAPvdlgnaEDFLEELREERDELRereaeleaTLRTARERVeEAEALLEAGKCPECGQPVEGSPHVET 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 393 LAETRMMQA-LREELATTERRAEEERSAHNATKmAAMERERELEHRAVDASTALVRIqriaDERTAKVADFEQKVALLEA 471
Cdd:PRK02224 470 IEEDRERVEeLEAELEDLEEEVEEVEERLERAE-DLVEAEDRIERLEERREDLEELI----AERRETIEEKRERAEELRE 544
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 472 ECTSLNQELQDMEVRARRGQKKAPDEANQVIQIQAWQDEVDRARQGQRDAEEKLSLME---AEMQKLRvEMAAMKRDAEH 548
Cdd:PRK02224 545 RAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIAdaeDEIERLR-EKREALAELND 623
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 85681038 549 YSRQEHTELEKRYRELTDLLyyKQTQLETMASEKAAAEFQLEK 591
Cdd:PRK02224 624 ERRERLAEKRERKRELEAEF--DEARIEEAREDKERAEEYLEQ 664
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
279-594 |
7.37e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.04 E-value: 7.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 279 QSKEARLARVCAGLSSRLQEIKAENAQLEELLTAEQELTKSYEA---SIRHLQKDLSAAKSEVTKVESSMVEALAAKNSE 355
Cdd:pfam02463 215 LKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQeieKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 356 IETLVSAMDALKNQAALNEGKLSSLQGDMEsimrnRELAETRMMQALREELATTERRAEEERSAHNATKMAAMERERELE 435
Cdd:pfam02463 295 EEELKSELLKLERRKVDDEEKLKESEKEKK-----KAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 436 HRAVDASTALVRIQRIADERTAKVADFEQKVALLEAECTSLNQELQDMEVRARRGQKKapdEANQVIQIQAWQDEVDRAR 515
Cdd:pfam02463 370 QLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKE---ELEILEEEEESIELKQGKL 446
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 85681038 516 QGQRDAEEKLSLMEAEMQKlrvemAAMKRDAEHYSRQEHTELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEVK 594
Cdd:pfam02463 447 TEEKEELEKQELKLLKDEL-----ELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGV 520
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
412-651 |
7.93e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.75 E-value: 7.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 412 RAEEERSAHNATKMAAMERERElehravDASTALVRIQRIADERTAKVADFEQKVALLEAECTSLNQELQdmEVRARRGQ 491
Cdd:TIGR02169 670 RSEPAELQRLRERLEGLKRELS------SLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEE--KLKERLEE 741
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 492 KKApdeanqviQIQAWQDEVDRARQGQRDAEEKLSLMEAEMQKLRVEMAAMKRdaeHYSRQEHTELEKRYREltdllyyk 571
Cdd:TIGR02169 742 LEE--------DLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEA---RLSHSRIPEIQAELSK-------- 802
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 572 qtqLETMASEKAAAEFQLEKEVKRLHEAQVEVEKSR---VSRRASATWEEDSEIKTLEPLPLYHRHMATASTQLQNAVKL 648
Cdd:TIGR02169 803 ---LEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIqelQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRD 879
|
...
gi 85681038 649 LDS 651
Cdd:TIGR02169 880 LES 882
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
295-466 |
8.03e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.45 E-value: 8.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 295 RLQEIKAENAQLEELLTAEQELTKSYEASIRHLQKDLSAAKSEVTKVEssmvEALAAKNSEIETLVSAMDalKNQAALNE 374
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLE----KEIKRLELEIEEVEARIK--KYEEQLGN 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 375 GK----LSSLQGDMESIMRNRELAETRMMQALrEELATTERRAEEERSAHNatkmaamERERELEHRAVDASTALVRIQR 450
Cdd:COG1579 85 VRnnkeYEALQKEIESLKRRISDLEDEILELM-ERIEELEEELAELEAELA-------ELEAELEEKKAELDEELAELEA 156
|
170
....*....|....*.
gi 85681038 451 IADERTAKVADFEQKV 466
Cdd:COG1579 157 ELEELEAEREELAAKI 172
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
242-562 |
1.28e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.03 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 242 STNLKREQDRRADTTSMKIQDQLEEAQGLLKATVSTGQSKEARLARVcaglsSRLQEIKAENAQL-----EELLTAEQEL 316
Cdd:pfam17380 283 AVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEM-----DRQAAIYAEQERMamereRELERIRQEE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 317 TKSYEASIRhlQKDLSAAKSEVTKVESSMVEAlAAKNSEIETLVSAMDALKNQAALNEGKLSSLQGDMESIMRNRELAET 396
Cdd:pfam17380 358 RKRELERIR--QEEIAMEISRMRELERLQMER-QQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQ 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 397 RMMQALREELATTERRAEEE-----------RSAHNATKMAAMERERELEHRAVDASTALVRIQRIADERTAKVADFEQK 465
Cdd:pfam17380 435 REVRRLEEERAREMERVRLEeqerqqqverlRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERK 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 466 VALLEAECTSLNQELQDMEVRarrgqKKAPDEANQVIQIQawqdEVDRARQGQRDAEE---KLSLMEAEMQKLRVEMAAM 542
Cdd:pfam17380 515 RKLLEKEMEERQKAIYEEERR-----REAEEERRKQQEME----ERRRIQEQMRKATEersRLEAMEREREMMRQIVESE 585
|
330 340
....*....|....*....|
gi 85681038 543 KRDAEHYSRQEHTELEKRYR 562
Cdd:pfam17380 586 KARAEYEATTPITTIKPIYR 605
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
456-607 |
2.22e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 2.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 456 TAKVADFEQKVALLEAECTSLNQELQDMEVRARRGQKKAP------DEANQVIQIQAWQDEVDRARQGQRDAEE---KLS 526
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREalqrlaEYSWDEIDVASAEREIAELEAELERLDAssdDLA 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 527 LMEAEMQKLRVEMAAMKRDAEHYsRQEHTELEKRYRELTDLLYYKQTQLETMAS-EKAAAEFQLEKEVKRLHEAQVEVEK 605
Cdd:COG4913 689 ALEEQLEELEAELEELEEELDEL-KGEIGRLEKELEQAEEELDELQDRLEAAEDlARLELRALLEERFAAALGDAVEREL 767
|
..
gi 85681038 606 SR 607
Cdd:COG4913 768 RE 769
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
230-606 |
2.50e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.28 E-value: 2.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 230 LEKEQEPKVPVTSTNLKREQDRRADTTSMKIQDQLEEAQGLLKATVSTGQSKEARLARVCAGLSSRLQeiKAENAQLEEL 309
Cdd:PTZ00121 1449 AKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAK--KAEEAKKADE 1526
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 310 LTAEQELTKSYEASIRHLQKDLSAAK--SEVTKVESSMVEALAAKNSEIETLVSAMDALKNQAALNEGKLSSLQGDMESI 387
Cdd:PTZ00121 1527 AKKAEEAKKADEAKKAEEKKKADELKkaEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKK 1606
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 388 MRNRELAETRMMQALREELatteRRAEEERSAHNATKMAAMERERELEhravdastalvRIQRIADERTAKVADFEQKVA 467
Cdd:PTZ00121 1607 MKAEEAKKAEEAKIKAEEL----KKAEEEKKKVEQLKKKEAEEKKKAE-----------ELKKAEEENKIKAAEEAKKAE 1671
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 468 LLEAECTSLNQELQDMEVRARRGQKKApDEANQVIQIQAWQDEVDRARQGQRDAEeklslmeaEMQKLRVEMAamKRDAE 547
Cdd:PTZ00121 1672 EDKKKAEEAKKAEEDEKKAAEALKKEA-EEAKKAEELKKKEAEEKKKAEELKKAE--------EENKIKAEEA--KKEAE 1740
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 548 HYSRQEHtELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEVKRLHEA-QVEVEKS 606
Cdd:PTZ00121 1741 EDKKKAE-EAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKrRMEVDKK 1799
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
260-628 |
3.62e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.82 E-value: 3.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 260 IQDQLEEAQGLLKAT---VSTGQSKEARLARVCAGLSSRLQE---IKAENAQLEELLTAEQELTKSYEASIRHLQKDLSA 333
Cdd:PRK03918 191 IEELIKEKEKELEEVlreINEISSELPELREELEKLEKEVKEleeLKEEIEELEKELESLEGSKRKLEEKIRELEERIEE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 334 AKSEVTKVESSM--VEALAAKNSEIETLVSAMDALKNQAALNEGKLSSLQGDMESIMRNRELAET--RMMQALREELATT 409
Cdd:PRK03918 271 LKKEIEELEEKVkeLKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEkeERLEELKKKLKEL 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 410 ERRAEEERSAHNATKMAAMERERELEHRAVDASTALVRIQRIADERTAKVADFEQKVALLEAECTSLNQELQDME---VR 486
Cdd:PRK03918 351 EKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKkaiEE 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 487 ARRGQKKAP------DEANQVIQIQAWQDEVDRARQGQRDAEEKLSLMEAEMQKLRVEMAAMKR---------------- 544
Cdd:PRK03918 431 LKKAKGKCPvcgrelTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESEliklkelaeqlkelee 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 545 DAEHYSRQEHTELEKRYRELTDLLYYKQTQLETMASE-KAAAEFQ-----LEKEVKRLHEAQVEVEKSRVSRRASATWEE 618
Cdd:PRK03918 511 KLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKElEKLEELKkklaeLEKKLDELEEELAELLKELEELGFESVEEL 590
|
410
....*....|
gi 85681038 619 DSEIKTLEPL 628
Cdd:PRK03918 591 EERLKELEPF 600
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
376-608 |
4.31e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.51 E-value: 4.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 376 KLSSLQGDMESIMRNRELAETRMMQALREELATTER-RAEEERSAHNATKMAAMERERELEHRAVDASTAlVRIQRIADE 454
Cdd:PTZ00121 1073 KPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETgKAEEARKAEEAKKKAEDARKAEEARKAEDARKA-EEARKAEDA 1151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 455 RTAKVADFEQKVALLE-----AECTSLNQELQDMEVRARRGQKKAPDEanQVIQIQAWQDEVDRARQGQRDAEEKlslmE 529
Cdd:PTZ00121 1152 KRVEIARKAEDARKAEearkaEDAKKAEAARKAEEVRKAEELRKAEDA--RKAEAARKAEEERKAEEARKAEDAK----K 1225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 530 AEMQKlRVEMAAMKRDAEHYSRQEHTELEKRYRELTDLLYYKQTQLETMASEK-AAAEFQLEKEVKRLHEAQVEVEKSRV 608
Cdd:PTZ00121 1226 AEAVK-KAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEArKADELKKAEEKKKADEAKKAEEKKKA 1304
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
295-486 |
5.34e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 5.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 295 RLQEIKAENAQLEELLTAEQELTKSyEASIRHLQKDLSAAKSEVTKVESSMVEA-LAAKNSEIETLVSAMDALKNQAALN 373
Cdd:COG4913 243 ALEDAREQIELLEPIRELAERYAAA-RERLAELEYLRAALRLWFAQRRLELLEAeLEELRAELARLEAELERLEARLDAL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 374 EGKLSSLQGDMESIMRNRELAETRMMQALREELATTERRAEEERSAHNATKMAAMERERELEHRAVDASTALVRIQRIAD 453
Cdd:COG4913 322 REELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELE 401
|
170 180 190
....*....|....*....|....*....|...
gi 85681038 454 ERTAKVADFEQKVALLEAECTSLNQELQDMEVR 486
Cdd:COG4913 402 ALEEALAEAEAALRDLRRELRELEAEIASLERR 434
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
396-601 |
7.16e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 39.75 E-value: 7.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 396 TRMMQALREELATT-ERRAEEERSAHNATKMAAMERERELEHRAVDASTALVRIQRIADER---TAKVADFEQKVALLEA 471
Cdd:COG4717 37 STLLAFIRAMLLERlEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELeelEEELEELEAELEELRE 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 472 ECTSLNQELQDMEVRARRGQKKA--PDEANQVIQIQAWQDEVDRARQGQRDAEEKLSLMEAEMQKLRVEMAAMKRDAEHY 549
Cdd:COG4717 117 ELEKLEKLLQLLPLYQELEALEAelAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQD 196
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 85681038 550 SRQEHTELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLE--KEVKRLHEAQV 601
Cdd:COG4717 197 LAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEaaALEERLKEARL 250
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
280-433 |
7.33e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 38.75 E-value: 7.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 280 SKEARLARVCAGLSSRLQEIKAENAQLEELLTAEQELTKSYEASIRHLQKDLSAAKSEVTKVESSMVEALAAKnsEIETL 359
Cdd:COG1579 17 SELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNK--EYEAL 94
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 85681038 360 VSAMDALKNQAALNEGKLSSLQGDMESIMRNRELAETRmMQALREELATTERRAEEERSAHNAtKMAAMERERE 433
Cdd:COG1579 95 QKEIESLKRRISDLEDEILELMERIEELEEELAELEAE-LAELEAELEEKKAELDEELAELEA-ELEELEAERE 166
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
261-604 |
8.80e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 39.37 E-value: 8.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 261 QDQLEEAQGLLKATVSTGQSKEARLARVCAgLSSRLQEIKAENAQLEELLTAEQELTKSYEAsIRHLQKDLSAAKSEVTK 340
Cdd:COG4717 97 LEELEEELEELEAELEELREELEKLEKLLQ-LLPLYQELEALEAELAELPERLEELEERLEE-LRELEEELEELEAELAE 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 341 VESSMVEAL----AAKNSEIETLVSAMDALKNQAALNEGKLSSLQGDMESIMRNRELAETRMM-QALREELATTERRA-- 413
Cdd:COG4717 175 LQEELEELLeqlsLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEaAALEERLKEARLLLli 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 414 ------------EEERSAHNATKMAAM------------ERERELEHRAVDASTALVRIQRIADERTAKVADF------- 462
Cdd:COG4717 255 aaallallglggSLLSLILTIAGVLFLvlgllallflllAREKASLGKEAEELQALPALEELEEEELEELLAAlglppdl 334
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85681038 463 -EQKVALLEAECTSLNQELQDMEVRARRGQKKAPDEANQVIQIQAWQDEVDRARQGQRDAEEKLSLmEAEMQKLRVEMAA 541
Cdd:COG4717 335 sPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQEL-KEELEELEEQLEE 413
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 85681038 542 MKRDAEHYSRQEHTE-LEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEK--EVKRLHEAQVEVE 604
Cdd:COG4717 414 LLGELEELLEALDEEeLEEELEELEEELEELEEELEELREELAELEAELEQleEDGELAELLQELE 479
|
|
| |
