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Conserved domains on  [gi|81910622|sp|Q642B2|]
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RecName: Full=Zinc finger protein 672

Protein Classification

C2H2-type zinc finger protein( domain architecture ID 11472214)

Cys2His2 (C2H2)-type zinc finger protein may be involved in transcriptional regulation

CATH:  3.30.160.60
Gene Ontology:  GO:0008270|GO:0003677
PubMed:  11361095|22803940
SCOP:  4003583

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
13-416 6.87e-08

FOG: Zn-finger [General function prediction only];


:

Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 54.70  E-value: 6.87e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81910622  13 RPYSCSVCGKSFQYSAVLLRHERAHGGDKRFRCLECGERCA--RASDLRVHRWTHAGQTLYICSECGQS--FSHSSLLDL 88
Cdd:COG5048  32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSfsRPLELSRHLRTHHNNPSDLNSKSLPLsnSKASSSSLS 111

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81910622  89 HLGTHRRRSSTCPCRLCGRRFPHVSALLLHRVRQHPPEKPHRCPLCARSFRQSALPFHLARAHPPETTIA------TAPA 162
Cdd:COG5048 112 SSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNPLPGNNSSSVNTPQSNSLHPPLPANSLSKDPSsnlsllISSN 191

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81910622 163 PSTLYHCTQCPRAFHSSAGLRNHSRIHVVPSLSDPGAeahrCGVCGKSFSKSSTLTRHLQRHSGEKPFKCPECGKGFLES 242
Cdd:COG5048 192 VSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLP----LTTNSQLSPKSLLSQSPSSLSSSDSSSSASESPRSSLPT 267

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81910622 243 ATLVRHQRTHTGE-------KPYACNDCGRCFSESSTLLRHQRS--HQGE--RPHIC--ATCGKGFGQRYDLVVHQRSHT 309
Cdd:COG5048 268 ASSQSSSPNESDSssekgfsLPIKSKQCNISFSRSSPLTRHLRSvnHSGEslKPFSCpySLCGKLFSRNDALKRHILLHT 347

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81910622 310 GERPFPCPECGRGFTDRSDLTK----HLRTHTGEKPYH---CELCGKRFTCISNLNV--HLRNHAGHKPH--KCPECGKS 378
Cdd:COG5048 348 SISPAKEKLLNSSSKFSPLLNNeppqSLQQYKDLKNDKkseTLSNSCIRNFKRDSNLslHIITHLSFRPYncKNPPCSKS 427

                       410       420       430
                ....*....|....*....|....*....|....*...
gi 81910622 379 FSVASKLALHRKTHLGERTAECteCGKFFSHGRSLSQH 416
Cdd:COG5048 428 FNRHYNLIPHKKIHTNHAPLLC--SILKSFRRDLDLSN 463
 
Name Accession Description Interval E-value
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
13-416 6.87e-08

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 54.70  E-value: 6.87e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81910622  13 RPYSCSVCGKSFQYSAVLLRHERAHGGDKRFRCLECGERCA--RASDLRVHRWTHAGQTLYICSECGQS--FSHSSLLDL 88
Cdd:COG5048  32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSfsRPLELSRHLRTHHNNPSDLNSKSLPLsnSKASSSSLS 111

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81910622  89 HLGTHRRRSSTCPCRLCGRRFPHVSALLLHRVRQHPPEKPHRCPLCARSFRQSALPFHLARAHPPETTIA------TAPA 162
Cdd:COG5048 112 SSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNPLPGNNSSSVNTPQSNSLHPPLPANSLSKDPSsnlsllISSN 191

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81910622 163 PSTLYHCTQCPRAFHSSAGLRNHSRIHVVPSLSDPGAeahrCGVCGKSFSKSSTLTRHLQRHSGEKPFKCPECGKGFLES 242
Cdd:COG5048 192 VSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLP----LTTNSQLSPKSLLSQSPSSLSSSDSSSSASESPRSSLPT 267

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81910622 243 ATLVRHQRTHTGE-------KPYACNDCGRCFSESSTLLRHQRS--HQGE--RPHIC--ATCGKGFGQRYDLVVHQRSHT 309
Cdd:COG5048 268 ASSQSSSPNESDSssekgfsLPIKSKQCNISFSRSSPLTRHLRSvnHSGEslKPFSCpySLCGKLFSRNDALKRHILLHT 347

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81910622 310 GERPFPCPECGRGFTDRSDLTK----HLRTHTGEKPYH---CELCGKRFTCISNLNV--HLRNHAGHKPH--KCPECGKS 378
Cdd:COG5048 348 SISPAKEKLLNSSSKFSPLLNNeppqSLQQYKDLKNDKkseTLSNSCIRNFKRDSNLslHIITHLSFRPYncKNPPCSKS 427

                       410       420       430
                ....*....|....*....|....*....|....*...
gi 81910622 379 FSVASKLALHRKTHLGERTAECteCGKFFSHGRSLSQH 416
Cdd:COG5048 428 FNRHYNLIPHKKIHTNHAPLLC--SILKSFRRDLDLSN 463
zf-H2C2_2 pfam13465
Zinc-finger double domain;
328-353 3.47e-04

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 37.74  E-value: 3.47e-04
                          10        20
                  ....*....|....*....|....*.
gi 81910622   328 DLTKHLRTHTGEKPYHCELCGKRFTC 353
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
SUF4-like cd20908
N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), ...
 312-361 5.66e-03

N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins; Oryza sativa SUPPRESSOR OF FRI 4 (OsSUF4) is a C2H2-type zinc finger transcription factor which interacts with the major H3K36 methyltransferase SDG725 to promote H3K36me3 (tri-methylation at H3K9) establishment. The transcription factor OsSUF4 recognizes a specific 7-bp DNA element (5'-CGGAAAT-3'), which is contained in the promoter regions of many genes throughout the rice genome. Through interaction with OsSUF4, SDG725 is recruited to the promoters of key florigen genes, RICE FLOWERING LOCUS T1 (RFT1) and Heading date 3a (Hd3a), for H3K36 deposition to promote gene activation and rice plant flowering. OsSUF4 target genes include a number of genes involved in many biological processes. Flowering plant Arabidopsis SUF4 binds to a 15bp DNA element (5'-CCAAATTTTAAGTTT-3') within the promoter of the floral repressor gene FLOWERING LOCUS C (FLC) and recruits the FRI-C transcription activator complex to the FLC promoter. Although the DNA-binding element and target genes of AtSUF4 are different from those of OsSUF4, AtSUF4 is known to interact with the Arabidopsis H3K36 methyltransferase SDG8 (also known as ASHH2/EFS/SET8), and the methylation deposition mechanism mediated by the SUF4 transcription factor and H3K36 methyltransferase may be conserved in Arabidopsis and rice. Proteins in this family have two conserved C2H2-type zinc finger motifs at the N-terminus (included in this model), and a large proline-rich domain at the C-terminus; for OsSUF4, it has been shown that the N-terminal zinc-finger domain is responsible for DNA binding, and that the C-terminal domain interacts with SDG725.


Pssm-ID: 411020 [Multi-domain]  Cd Length: 82  Bit Score: 36.00  E-value: 5.66e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 81910622 312 RPFpCPECGRGFTDRSDLTKHLRTHTgekpYHCELCGKRFTCISNLNVHL 361
Cdd:cd20908   1 KPW-CYYCDREFDDEKILIQHQKAKH----FKCHICHKKLYTAGGLAVHC 45
 
Name Accession Description Interval E-value
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
13-416 6.87e-08

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 54.70  E-value: 6.87e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81910622  13 RPYSCSVCGKSFQYSAVLLRHERAHGGDKRFRCLECGERCA--RASDLRVHRWTHAGQTLYICSECGQS--FSHSSLLDL 88
Cdd:COG5048  32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSfsRPLELSRHLRTHHNNPSDLNSKSLPLsnSKASSSSLS 111

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81910622  89 HLGTHRRRSSTCPCRLCGRRFPHVSALLLHRVRQHPPEKPHRCPLCARSFRQSALPFHLARAHPPETTIA------TAPA 162
Cdd:COG5048 112 SSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNPLPGNNSSSVNTPQSNSLHPPLPANSLSKDPSsnlsllISSN 191

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81910622 163 PSTLYHCTQCPRAFHSSAGLRNHSRIHVVPSLSDPGAeahrCGVCGKSFSKSSTLTRHLQRHSGEKPFKCPECGKGFLES 242
Cdd:COG5048 192 VSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLP----LTTNSQLSPKSLLSQSPSSLSSSDSSSSASESPRSSLPT 267

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81910622 243 ATLVRHQRTHTGE-------KPYACNDCGRCFSESSTLLRHQRS--HQGE--RPHIC--ATCGKGFGQRYDLVVHQRSHT 309
Cdd:COG5048 268 ASSQSSSPNESDSssekgfsLPIKSKQCNISFSRSSPLTRHLRSvnHSGEslKPFSCpySLCGKLFSRNDALKRHILLHT 347

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81910622 310 GERPFPCPECGRGFTDRSDLTK----HLRTHTGEKPYH---CELCGKRFTCISNLNV--HLRNHAGHKPH--KCPECGKS 378
Cdd:COG5048 348 SISPAKEKLLNSSSKFSPLLNNeppqSLQQYKDLKNDKkseTLSNSCIRNFKRDSNLslHIITHLSFRPYncKNPPCSKS 427

                       410       420       430
                ....*....|....*....|....*....|....*...
gi 81910622 379 FSVASKLALHRKTHLGERTAECteCGKFFSHGRSLSQH 416
Cdd:COG5048 428 FNRHYNLIPHKKIHTNHAPLLC--SILKSFRRDLDLSN 463
zf-H2C2_2 pfam13465
Zinc-finger double domain;
328-353 3.47e-04

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 37.74  E-value: 3.47e-04
                          10        20
                  ....*....|....*....|....*.
gi 81910622   328 DLTKHLRTHTGEKPYHCELCGKRFTC 353
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
AF-4 pfam05110
AF-4 proto-oncoprotein N-terminal region; This family consists of AF4 (Proto-oncogene AF4) and ...
 120-286 6.91e-04

AF-4 proto-oncoprotein N-terminal region; This family consists of AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental retardation syndrome) nuclear proteins. These proteins have been linked to human diseases such as acute lymphoblastic leukaemia and mental retardation. The family also contains a Drosophila AF4 protein homolog Lilliputian which contains an AT-hook domain. Lilliputian represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila.


Pssm-ID: 461550 [Multi-domain]  Cd Length: 514  Bit Score: 42.03  E-value: 6.91e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81910622   120 VRQHPPEKPhRCPLCARSFRQSALPFHLARAHPPETTIATAPAPSTLYHCTQCPRAFHSSA-GLrnHSRIHVVPSLSDPG 198
Cdd:pfam05110  80 VPQTPQEKP-DQPFFPDKTSGLPPSFHTSSHSQPMGPPSSSSPSVSSSQSQKKSQARTEPAhGG--HSSSGSQSSQRSQG 156

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81910622   199 AEAHRCGVCGKSFSKSSTLTRHlqrhsgEKPFKCPECGKGFLESATL------------VRHQRTHTGEKPYACNDCGRC 266
Cdd:pfam05110 157 QSRSKGGQESHSSSHHKRQERR------EDLFSCASLSHSLEELSPLlsslsspvkplsPSHSRQHTGSKAQNSSDHHGK 230

                         170       180
                  ....*....|....*....|..
gi 81910622   267 FSESSTLLRHQ--RSHQGERPH 286
Cdd:pfam05110 231 EYSHSKSPRDSeaGSHGPESPS 252
zf-H2C2_2 pfam13465
Zinc-finger double domain;
356-380 1.67e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 35.81  E-value: 1.67e-03
                          10        20
                  ....*....|....*....|....*
gi 81910622   356 NLNVHLRNHAGHKPHKCPECGKSFS 380
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFK 25
zf-H2C2_2 pfam13465
Zinc-finger double domain;
217-239 2.07e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 35.42  E-value: 2.07e-03
                          10        20
                  ....*....|....*....|...
gi 81910622   217 LTRHLQRHSGEKPFKCPECGKGF 239
Cdd:pfam13465   2 LKRHMRTHTGEKPYKCPECGKSF 24
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 310-370 3.08e-03

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 39.70  E-value: 3.08e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81910622 310 GERPFPCP--ECGRGFTDRSDLTKH-LRTHTGE------------------KPYHCELCGKRFtciSNLNvHLRNHAGHK 368
Cdd:COG5189 346 DGKPYKCPveGCNKKYKNQNGLKYHmLHGHQNQklhenpspekmnifsakdKPYRCEVCDKRY---KNLN-GLKYHRKHS 421


                ..
gi 81910622 369 PH 370
Cdd:COG5189 422 HD 423
zf-H2C2_2 pfam13465
Zinc-finger double domain;
245-268 3.84e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 34.65  E-value: 3.84e-03
                          10        20
                  ....*....|....*....|....
gi 81910622   245 LVRHQRTHTGEKPYACNDCGRCFS 268
Cdd:pfam13465   2 LKRHMRTHTGEKPYKCPECGKSFK 25
SUF4-like cd20908
N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), ...
 312-361 5.66e-03

N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins; Oryza sativa SUPPRESSOR OF FRI 4 (OsSUF4) is a C2H2-type zinc finger transcription factor which interacts with the major H3K36 methyltransferase SDG725 to promote H3K36me3 (tri-methylation at H3K9) establishment. The transcription factor OsSUF4 recognizes a specific 7-bp DNA element (5'-CGGAAAT-3'), which is contained in the promoter regions of many genes throughout the rice genome. Through interaction with OsSUF4, SDG725 is recruited to the promoters of key florigen genes, RICE FLOWERING LOCUS T1 (RFT1) and Heading date 3a (Hd3a), for H3K36 deposition to promote gene activation and rice plant flowering. OsSUF4 target genes include a number of genes involved in many biological processes. Flowering plant Arabidopsis SUF4 binds to a 15bp DNA element (5'-CCAAATTTTAAGTTT-3') within the promoter of the floral repressor gene FLOWERING LOCUS C (FLC) and recruits the FRI-C transcription activator complex to the FLC promoter. Although the DNA-binding element and target genes of AtSUF4 are different from those of OsSUF4, AtSUF4 is known to interact with the Arabidopsis H3K36 methyltransferase SDG8 (also known as ASHH2/EFS/SET8), and the methylation deposition mechanism mediated by the SUF4 transcription factor and H3K36 methyltransferase may be conserved in Arabidopsis and rice. Proteins in this family have two conserved C2H2-type zinc finger motifs at the N-terminus (included in this model), and a large proline-rich domain at the C-terminus; for OsSUF4, it has been shown that the N-terminal zinc-finger domain is responsible for DNA binding, and that the C-terminal domain interacts with SDG725.


Pssm-ID: 411020 [Multi-domain]  Cd Length: 82  Bit Score: 36.00  E-value: 5.66e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 81910622 312 RPFpCPECGRGFTDRSDLTKHLRTHTgekpYHCELCGKRFTCISNLNVHL 361
Cdd:cd20908   1 KPW-CYYCDREFDDEKILIQHQKAKH----FKCHICHKKLYTAGGLAVHC 45
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 314-336 7.39e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 33.81  E-value: 7.39e-03
                          10        20
                  ....*....|....*....|...
gi 81910622   314 FPCPECGRGFTDRSDLTKHLRTH 336
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23
zf-H2C2_2 pfam13465
Zinc-finger double domain;
300-324 8.95e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 33.88  E-value: 8.95e-03
                          10        20
                  ....*....|....*....|....*
gi 81910622   300 DLVVHQRSHTGERPFPCPECGRGFT 324
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFK 25
SUF4-like cd20908
N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), ...
 13-61 9.99e-03

N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins; Oryza sativa SUPPRESSOR OF FRI 4 (OsSUF4) is a C2H2-type zinc finger transcription factor which interacts with the major H3K36 methyltransferase SDG725 to promote H3K36me3 (tri-methylation at H3K9) establishment. The transcription factor OsSUF4 recognizes a specific 7-bp DNA element (5'-CGGAAAT-3'), which is contained in the promoter regions of many genes throughout the rice genome. Through interaction with OsSUF4, SDG725 is recruited to the promoters of key florigen genes, RICE FLOWERING LOCUS T1 (RFT1) and Heading date 3a (Hd3a), for H3K36 deposition to promote gene activation and rice plant flowering. OsSUF4 target genes include a number of genes involved in many biological processes. Flowering plant Arabidopsis SUF4 binds to a 15bp DNA element (5'-CCAAATTTTAAGTTT-3') within the promoter of the floral repressor gene FLOWERING LOCUS C (FLC) and recruits the FRI-C transcription activator complex to the FLC promoter. Although the DNA-binding element and target genes of AtSUF4 are different from those of OsSUF4, AtSUF4 is known to interact with the Arabidopsis H3K36 methyltransferase SDG8 (also known as ASHH2/EFS/SET8), and the methylation deposition mechanism mediated by the SUF4 transcription factor and H3K36 methyltransferase may be conserved in Arabidopsis and rice. Proteins in this family have two conserved C2H2-type zinc finger motifs at the N-terminus (included in this model), and a large proline-rich domain at the C-terminus; for OsSUF4, it has been shown that the N-terminal zinc-finger domain is responsible for DNA binding, and that the C-terminal domain interacts with SDG725.


Pssm-ID: 411020 [Multi-domain]  Cd Length: 82  Bit Score: 35.22  E-value: 9.99e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 81910622  13 RPYsCSVCGKSFQYSAVLLRHERAhggdKRFRCLECGERCARASDLRVH 61
Cdd:cd20908   1 KPW-CYYCDREFDDEKILIQHQKA----KHFKCHICHKKLYTAGGLAVH 44
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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