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Conserved domains on  [gi|123797481|sp|Q3UUX7|]
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RecName: Full=Uncharacterized protein C4orf46 homolog

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RCDG1 super family cl24331
Renal cancer differentiation gene 1 protein; This family includes human protein C4orf46, also ...
 31-85 4.36e-31

Renal cancer differentiation gene 1 protein; This family includes human protein C4orf46, also known as renal cancer differentiation gene 1 protein (RCDG1).


The actual alignment was detected with superfamily member pfam15725:

Pssm-ID: 292353  Cd Length: 83  Bit Score: 105.30  E-value: 4.36e-31
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 123797481   31 MPVSLGWRDPSRSPGPTVDPLEQVELQIGDAAFSLTKLLEATSAVSAQVEELALK 85
Cdd:pfam15725  29 LPVSLGWRIPSRSQAPTVDPLEEVELQIGDAAFSLTKLLEATSAVSAQVEELAFK 83
 
Name Accession Description Interval E-value
RCDG1 pfam15725
Renal cancer differentiation gene 1 protein; This family includes human protein C4orf46, also ...
 31-85 4.36e-31

Renal cancer differentiation gene 1 protein; This family includes human protein C4orf46, also known as renal cancer differentiation gene 1 protein (RCDG1).


Pssm-ID: 292353  Cd Length: 83  Bit Score: 105.30  E-value: 4.36e-31
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 123797481   31 MPVSLGWRDPSRSPGPTVDPLEQVELQIGDAAFSLTKLLEATSAVSAQVEELALK 85
Cdd:pfam15725  29 LPVSLGWRIPSRSQAPTVDPLEEVELQIGDAAFSLTKLLEATSAVSAQVEELAFK 83
 
Name Accession Description Interval E-value
RCDG1 pfam15725
Renal cancer differentiation gene 1 protein; This family includes human protein C4orf46, also ...
 31-85 4.36e-31

Renal cancer differentiation gene 1 protein; This family includes human protein C4orf46, also known as renal cancer differentiation gene 1 protein (RCDG1).


Pssm-ID: 292353  Cd Length: 83  Bit Score: 105.30  E-value: 4.36e-31
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 123797481   31 MPVSLGWRDPSRSPGPTVDPLEQVELQIGDAAFSLTKLLEATSAVSAQVEELALK 85
Cdd:pfam15725  29 LPVSLGWRIPSRSQAPTVDPLEEVELQIGDAAFSLTKLLEATSAVSAQVEELAFK 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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