NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|215275624|sp|Q3AY07|]
View 

RecName: Full=Cytochrome b6-f complex subunit 8; AltName: Full=Cytochrome b6-f complex subunit PetN; AltName: Full=Cytochrome b6-f complex subunit VIII

Protein Classification

similar to cytochrome b6-f complex subunit( domain architecture ID 10011811)

protein similar to cytochrome b6-f complex subunit

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
petN PRK02529
cytochrome b6-f complex subunit PetN; Provisional
 1-33 4.63e-09

cytochrome b6-f complex subunit PetN; Provisional


:

Pssm-ID: 134722  Cd Length: 33  Bit Score: 44.85  E-value: 4.63e-09
                        10        20        30
                ....*....|....*....|....*....|...
gi 215275624  1 MLFTVAWASLAAMFSFSIAMVVWGRNGDGTLKF 33
Cdd:PRK02529  1 MLFTLGWASLAAIFTFSIAMVVWGRNGDGSIDF 33
 
Name Accession Description Interval E-value
petN PRK02529
cytochrome b6-f complex subunit PetN; Provisional
 1-33 4.63e-09

cytochrome b6-f complex subunit PetN; Provisional


Pssm-ID: 134722  Cd Length: 33  Bit Score: 44.85  E-value: 4.63e-09
                        10        20        30
                ....*....|....*....|....*....|...
gi 215275624  1 MLFTVAWASLAAMFSFSIAMVVWGRNGDGTLKF 33
Cdd:PRK02529  1 MLFTLGWASLAAIFTFSIAMVVWGRNGDGSIDF 33
PetN pfam03742
PetN; PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or ...
 2-28 4.14e-05

PetN; PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or stability.


Pssm-ID: 397695  Cd Length: 29  Bit Score: 34.67  E-value: 4.14e-05
                         10        20
                 ....*....|....*....|....*..
gi 215275624   2 LFTVAWASLAAMFSFSIAMVVWGRNGD 28
Cdd:pfam03742  3 ILTLGWAALLAVFTFSIAMVVWGRNGF 29
PetN COG5683
Cytochrome b6f complex subunit VIII, PetN/Ycf6 [Energy production and conversion];
2-27 1.45e-04

Cytochrome b6f complex subunit VIII, PetN/Ycf6 [Energy production and conversion];


Pssm-ID: 444397  Cd Length: 29  Bit Score: 33.51  E-value: 1.45e-04
                        10        20
                ....*....|....*....|....*.
gi 215275624  2 LFTVAWASLAAMFSFSIAMVVWGRNG 27
Cdd:COG5683   3 ILTLGWVALLALFTFSIAMVVWGRNG 28
 
Name Accession Description Interval E-value
petN PRK02529
cytochrome b6-f complex subunit PetN; Provisional
 1-33 4.63e-09

cytochrome b6-f complex subunit PetN; Provisional


Pssm-ID: 134722  Cd Length: 33  Bit Score: 44.85  E-value: 4.63e-09
                        10        20        30
                ....*....|....*....|....*....|...
gi 215275624  1 MLFTVAWASLAAMFSFSIAMVVWGRNGDGTLKF 33
Cdd:PRK02529  1 MLFTLGWASLAAIFTFSIAMVVWGRNGDGSIDF 33
PetN pfam03742
PetN; PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or ...
 2-28 4.14e-05

PetN; PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or stability.


Pssm-ID: 397695  Cd Length: 29  Bit Score: 34.67  E-value: 4.14e-05
                         10        20
                 ....*....|....*....|....*..
gi 215275624   2 LFTVAWASLAAMFSFSIAMVVWGRNGD 28
Cdd:pfam03742  3 ILTLGWAALLAVFTFSIAMVVWGRNGF 29
PetN COG5683
Cytochrome b6f complex subunit VIII, PetN/Ycf6 [Energy production and conversion];
2-27 1.45e-04

Cytochrome b6f complex subunit VIII, PetN/Ycf6 [Energy production and conversion];


Pssm-ID: 444397  Cd Length: 29  Bit Score: 33.51  E-value: 1.45e-04
                        10        20
                ....*....|....*....|....*.
gi 215275624  2 LFTVAWASLAAMFSFSIAMVVWGRNG 27
Cdd:COG5683   3 ILTLGWVALLALFTFSIAMVVWGRNG 28
petN CHL00009
cytochrome b6/f complex subunit VIII
 2-27 2.55e-03

cytochrome b6/f complex subunit VIII


Pssm-ID: 176952  Cd Length: 29  Bit Score: 30.45  E-value: 2.55e-03
                        10        20
                ....*....|....*....|....*.
gi 215275624  2 LFTVAWASLAAMFSFSIAMVVWGRNG 27
Cdd:CHL00009  3 IVSLAWAALMVVFTFSLSLVVWGRSG 28
PRK14747 PRK14747
cytochrome b6-f complex subunit PetN; Provisional
 1-27 9.62e-03

cytochrome b6-f complex subunit PetN; Provisional


Pssm-ID: 184810  Cd Length: 29  Bit Score: 28.68  E-value: 9.62e-03
                        10        20
                ....*....|....*....|....*..
gi 215275624  1 MLFTVAWASLAAMFSFSIAMVVWGRNG 27
Cdd:PRK14747  2 DILTLGWVSVLVLFTWSIAMVVWGRNG 28
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH