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Conserved domains on  [gi|6093524|sp|Q13405|]
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RecName: Full=Large ribosomal subunit protein mL49; AltName: Full=39S ribosomal protein L49, mitochondrial; Short=L49mt; Short=MRP-L49; AltName: Full=Neighbor of FAU; Short=NOF; AltName: Full=Protein NOF1

Protein Classification

mitochondrial large ribosomal subunit protein MRPL49( domain architecture ID 10523601)

mitochondrial large ribosomal subunit protein MRPL49

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Img2 pfam05046
Mitochondrial large subunit ribosomal protein (Img2); This family of proteins have been ...
 84-166 5.99e-38

Mitochondrial large subunit ribosomal protein (Img2); This family of proteins have been identified as part of the mitochondrial large ribosomal subunit in yeast.


:

Pssm-ID: 461535  Cd Length: 83  Bit Score: 124.92  E-value: 5.99e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6093524     84 YFVRRSRMHNIPVYKDITH-GNRQMTVIRKVEGDIWALQKDVEDFLSpllGKTPVTQVNEVTGTLRIKGYFDQELKAWLL 162
Cdd:pfam05046   3 YFVRRTRSGNLPVYTDIKNgGNRKLTVIRKIEGDIWALRKDLKKALG---LIPEDVRVNEVTGHIEIKGDHVNEVKKWLL 79


                  ....
gi 6093524    163 EKGF 166
Cdd:pfam05046  80 EKGF 83
 
Name Accession Description Interval E-value
Img2 pfam05046
Mitochondrial large subunit ribosomal protein (Img2); This family of proteins have been ...
 84-166 5.99e-38

Mitochondrial large subunit ribosomal protein (Img2); This family of proteins have been identified as part of the mitochondrial large ribosomal subunit in yeast.


Pssm-ID: 461535  Cd Length: 83  Bit Score: 124.92  E-value: 5.99e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6093524     84 YFVRRSRMHNIPVYKDITH-GNRQMTVIRKVEGDIWALQKDVEDFLSpllGKTPVTQVNEVTGTLRIKGYFDQELKAWLL 162
Cdd:pfam05046   3 YFVRRTRSGNLPVYTDIKNgGNRKLTVIRKIEGDIWALRKDLKKALG---LIPEDVRVNEVTGHIEIKGDHVNEVKKWLL 79


                  ....
gi 6093524    163 EKGF 166
Cdd:pfam05046  80 EKGF 83
 
Name Accession Description Interval E-value
Img2 pfam05046
Mitochondrial large subunit ribosomal protein (Img2); This family of proteins have been ...
 84-166 5.99e-38

Mitochondrial large subunit ribosomal protein (Img2); This family of proteins have been identified as part of the mitochondrial large ribosomal subunit in yeast.


Pssm-ID: 461535  Cd Length: 83  Bit Score: 124.92  E-value: 5.99e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6093524     84 YFVRRSRMHNIPVYKDITH-GNRQMTVIRKVEGDIWALQKDVEDFLSpllGKTPVTQVNEVTGTLRIKGYFDQELKAWLL 162
Cdd:pfam05046   3 YFVRRTRSGNLPVYTDIKNgGNRKLTVIRKIEGDIWALRKDLKKALG---LIPEDVRVNEVTGHIEIKGDHVNEVKKWLL 79


                  ....
gi 6093524    163 EKGF 166
Cdd:pfam05046  80 EKGF 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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