|
Name |
Accession |
Description |
Interval |
E-value |
| GOLGA2L5 |
pfam15070 |
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein ... |
21-254 |
3.02e-37 |
|
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein family remains unknown. This family of proteins is thought to be found in the Golgi apparatus of eukaryotes.
Pssm-ID: 464485 [Multi-domain] Cd Length: 521 Bit Score: 142.12 E-value: 3.02e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 21 QLKESLKEVQLERDEYAEHLKGERARWQQRMRKMSQEVCSLKKEKKHDKYRVEKLERSLSKLKNQMAEPLPPEPPAVP-- 98
Cdd:pfam15070 1 QLMESLKQLQTERDQYAENLKEEGAVWQQKMQQLSEQVRTLREEKERSVSQVQELETSLAELKNQAAVPPAEEEQPPAgp 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 99 SEVE------LQHLRKELERVAGALQAQVEYNQRISLLNEGQKERLREQEERLQEQQERLPEQEERL------------- 159
Cdd:pfam15070 81 SEEEqrlqeeAEQLQKELEALAGQLQAQVQDNEQLSRLNQEQEQRLLELERAAERWGEQAEDRKQILedmqsdratisra 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 160 --------QQLAEPQNSFKELNNEN---KSVLQLEQQVK--------ELQEKLG-------------------------- 194
Cdd:pfam15070 161 lsqnrelkEQLAELQNGFVKLTNENmelTSALQSEQHVKkelakklgQLQEELGelketlelksqeaqslqeqrdqylah 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 195 -----------------------------------------------------KERLEAASQQKQQLTAQLSLMALPGEG 221
Cdd:pfam15070 241 lqqyvaayqqlasekeelhkqyllqtqlmdrlqheevqgkvaaemarqelqetQERLEALTQQNQQLQAQLSLLANPGEG 320
|
330 340 350
....*....|....*....|....*....|...
gi 121940175 222 HGGEHlDSEGEEAPRPMPSVPEDLESREAMSGF 254
Cdd:pfam15070 321 DGLES-EEEEEEAPRPSLSIPEDFESREAMVAF 352
|
|
| GM130_C |
pfam19046 |
GM130 C-terminal binding motif; This entry represents the C-terminal motif from the GM130 ... |
391-430 |
2.08e-18 |
|
GM130 C-terminal binding motif; This entry represents the C-terminal motif from the GM130 protein that is bound by the GRASP65 PDZ domain pfam04495.
Pssm-ID: 465957 Cd Length: 46 Bit Score: 78.19 E-value: 2.08e-18
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 121940175 391 SPHDNPTAQPIV------QDHQEHPGLGSNCCVPFFCWAWLPRRRR 430
Cdd:pfam19046 1 SPPENPTAQQIMqllpeiQNPQEHPGLGSNPCIPFFYRADENDEVK 46
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
11-211 |
5.27e-07 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 52.22 E-value: 5.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 11 EQALLKAQLTQLKESLKEVQLERDEyAEHLKGERARWQQRMRKMSQEVCSLKKE------KKHDKYRVEKLERSLSKLKN 84
Cdd:PRK11281 57 EDKLVQQDLEQTLALLDKIDRQKEE-TEQLKQQLAQAPAKLRQAQAELEALKDDndeetrETLSTLSLRQLESRLAQTLD 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 85 QMAEPLPPEPPAVPSEVELQhlrKELERVAGALQAQVEYNQRI-SLLNEGQkerlreqeerlQEQQERLPEQEERL---Q 160
Cdd:PRK11281 136 QLQNAQNDLAEYNSQLVSLQ---TQPERAQAALYANSQRLQQIrNLLKGGK-----------VGGKALRPSQRVLLqaeQ 201
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 121940175 161 QLAEPQNSFKELNNENKSVLQ----------------LEQQVKELQEKLGKERLEAASQQKQQLTAQ 211
Cdd:PRK11281 202 ALLNAQNDLQRKSLEGNTQLQdllqkqrdyltariqrLEHQLQLLQEAINSKRLTLSEKTVQEAQSQ 268
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
4-214 |
1.63e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.44 E-value: 1.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 4 KLEQSMREQALLKAQLTQLKESLKEVQLERDEYAEHLKGERARWQQrmrkMSQEVCSLKKEKKHDKYRVEKLERSLSKLK 83
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEE----LSRQISALRKDLARLEAEVEQLEERIAQLS 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 84 NQMAEPLPPEPPAVPSEVELQHLRKELERVAGALQAQVE-YNQRISLLNEGQKERLREQEERLQEQQERLPEQEERLQQL 162
Cdd:TIGR02168 754 KELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEqLKEELKALREALDELRAELTLLNEEAANLRERLESLERRI 833
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 121940175 163 AEPQNSFKELNNE----NKSVLQLEQQVKELQEKLGK--ERLEAASQQKQQLTAQLSL 214
Cdd:TIGR02168 834 AATERRLEDLEEQieelSEDIESLAAEIEELEELIEEleSELEALLNERASLEEALAL 891
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
4-214 |
4.10e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 4.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 4 KLEQSMREQALLKAQLTQLKESLKEVQLERDEYAE-----------------HLKGERARWQQRMRKMSQEVCSLKKEKK 66
Cdd:COG1196 254 ELEELEAELAELEAELEELRLELEELELELEEAQAeeyellaelarleqdiaRLEERRRELEERLEELEEELAELEEELE 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 67 HDKYRVEKLERSLSKLKNQMAEPLPPEPPAVPSEVELQHLRKELER--------VAGALQAQVEYNQRISLLNEGQKERL 138
Cdd:COG1196 334 ELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEeleelaeeLLEALRAAAELAAQLEELEEAEEALL 413
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 121940175 139 REQEERLQEQQErlpEQEERLQQLAEPQNSFKELNNENKSVLQLEQQVKELQEKLGKERLEAASQQKQQLTAQLSL 214
Cdd:COG1196 414 ERLERLEEELEE---LEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| GOLGA2L5 |
pfam15070 |
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein ... |
21-254 |
3.02e-37 |
|
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein family remains unknown. This family of proteins is thought to be found in the Golgi apparatus of eukaryotes.
Pssm-ID: 464485 [Multi-domain] Cd Length: 521 Bit Score: 142.12 E-value: 3.02e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 21 QLKESLKEVQLERDEYAEHLKGERARWQQRMRKMSQEVCSLKKEKKHDKYRVEKLERSLSKLKNQMAEPLPPEPPAVP-- 98
Cdd:pfam15070 1 QLMESLKQLQTERDQYAENLKEEGAVWQQKMQQLSEQVRTLREEKERSVSQVQELETSLAELKNQAAVPPAEEEQPPAgp 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 99 SEVE------LQHLRKELERVAGALQAQVEYNQRISLLNEGQKERLREQEERLQEQQERLPEQEERL------------- 159
Cdd:pfam15070 81 SEEEqrlqeeAEQLQKELEALAGQLQAQVQDNEQLSRLNQEQEQRLLELERAAERWGEQAEDRKQILedmqsdratisra 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 160 --------QQLAEPQNSFKELNNEN---KSVLQLEQQVK--------ELQEKLG-------------------------- 194
Cdd:pfam15070 161 lsqnrelkEQLAELQNGFVKLTNENmelTSALQSEQHVKkelakklgQLQEELGelketlelksqeaqslqeqrdqylah 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 195 -----------------------------------------------------KERLEAASQQKQQLTAQLSLMALPGEG 221
Cdd:pfam15070 241 lqqyvaayqqlasekeelhkqyllqtqlmdrlqheevqgkvaaemarqelqetQERLEALTQQNQQLQAQLSLLANPGEG 320
|
330 340 350
....*....|....*....|....*....|...
gi 121940175 222 HGGEHlDSEGEEAPRPMPSVPEDLESREAMSGF 254
Cdd:pfam15070 321 DGLES-EEEEEEAPRPSLSIPEDFESREAMVAF 352
|
|
| GM130_C |
pfam19046 |
GM130 C-terminal binding motif; This entry represents the C-terminal motif from the GM130 ... |
391-430 |
2.08e-18 |
|
GM130 C-terminal binding motif; This entry represents the C-terminal motif from the GM130 protein that is bound by the GRASP65 PDZ domain pfam04495.
Pssm-ID: 465957 Cd Length: 46 Bit Score: 78.19 E-value: 2.08e-18
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 121940175 391 SPHDNPTAQPIV------QDHQEHPGLGSNCCVPFFCWAWLPRRRR 430
Cdd:pfam19046 1 SPPENPTAQQIMqllpeiQNPQEHPGLGSNPCIPFFYRADENDEVK 46
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
11-211 |
5.27e-07 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 52.22 E-value: 5.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 11 EQALLKAQLTQLKESLKEVQLERDEyAEHLKGERARWQQRMRKMSQEVCSLKKE------KKHDKYRVEKLERSLSKLKN 84
Cdd:PRK11281 57 EDKLVQQDLEQTLALLDKIDRQKEE-TEQLKQQLAQAPAKLRQAQAELEALKDDndeetrETLSTLSLRQLESRLAQTLD 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 85 QMAEPLPPEPPAVPSEVELQhlrKELERVAGALQAQVEYNQRI-SLLNEGQkerlreqeerlQEQQERLPEQEERL---Q 160
Cdd:PRK11281 136 QLQNAQNDLAEYNSQLVSLQ---TQPERAQAALYANSQRLQQIrNLLKGGK-----------VGGKALRPSQRVLLqaeQ 201
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 121940175 161 QLAEPQNSFKELNNENKSVLQ----------------LEQQVKELQEKLGKERLEAASQQKQQLTAQ 211
Cdd:PRK11281 202 ALLNAQNDLQRKSLEGNTQLQdllqkqrdyltariqrLEHQLQLLQEAINSKRLTLSEKTVQEAQSQ 268
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
4-214 |
1.63e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.44 E-value: 1.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 4 KLEQSMREQALLKAQLTQLKESLKEVQLERDEYAEHLKGERARWQQrmrkMSQEVCSLKKEKKHDKYRVEKLERSLSKLK 83
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEE----LSRQISALRKDLARLEAEVEQLEERIAQLS 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 84 NQMAEPLPPEPPAVPSEVELQHLRKELERVAGALQAQVE-YNQRISLLNEGQKERLREQEERLQEQQERLPEQEERLQQL 162
Cdd:TIGR02168 754 KELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEqLKEELKALREALDELRAELTLLNEEAANLRERLESLERRI 833
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 121940175 163 AEPQNSFKELNNE----NKSVLQLEQQVKELQEKLGK--ERLEAASQQKQQLTAQLSL 214
Cdd:TIGR02168 834 AATERRLEDLEEQieelSEDIESLAAEIEELEELIEEleSELEALLNERASLEEALAL 891
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
4-214 |
4.10e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 4.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 4 KLEQSMREQALLKAQLTQLKESLKEVQLERDEYAE-----------------HLKGERARWQQRMRKMSQEVCSLKKEKK 66
Cdd:COG1196 254 ELEELEAELAELEAELEELRLELEELELELEEAQAeeyellaelarleqdiaRLEERRRELEERLEELEEELAELEEELE 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 67 HDKYRVEKLERSLSKLKNQMAEPLPPEPPAVPSEVELQHLRKELER--------VAGALQAQVEYNQRISLLNEGQKERL 138
Cdd:COG1196 334 ELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEeleelaeeLLEALRAAAELAAQLEELEEAEEALL 413
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 121940175 139 REQEERLQEQQErlpEQEERLQQLAEPQNSFKELNNENKSVLQLEQQVKELQEKLGKERLEAASQQKQQLTAQLSL 214
Cdd:COG1196 414 ERLERLEEELEE---LEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1-235 |
7.88e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.51 E-value: 7.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 1 MEWKLEQSMREQALLKAQLTQLKESLKEVQLERDEYAEHLKGERARWQQRMRKMSQevcsLKKEKKHDKYRVEKLERSLS 80
Cdd:TIGR02168 731 LRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEE----LEAQIEQLKEELKALREALD 806
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 81 KLKNQMAEPLPPEPPAVPSEVELQHLRKELERVAGALQAQVEYN--QRISL---LNEGQKERLREQEERLQEQQERLPEQ 155
Cdd:TIGR02168 807 ELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELseDIESLaaeIEELEELIEELESELEALLNERASLE 886
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 156 EERLQQLAEPQNSFKELNNENKSVLQLEQQVKELQEKLGK--ERLEAASQQKQQLTAQLS-LMALPGEGHGGEHLDSEGE 232
Cdd:TIGR02168 887 EALALLRSELEELSEELRELESKRSELRRELEELREKLAQleLRLEGLEVRIDNLQERLSeEYSLTLEEAEALENKIEDD 966
|
...
gi 121940175 233 EAP 235
Cdd:TIGR02168 967 EEE 969
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
15-281 |
8.02e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.51 E-value: 8.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 15 LKAQLTQLKESLKEVQLERDEYAEHLKGERARWQQ---RMRKMSQEVCSLKKEKKHDKYRVEKLERSLSKLKNQMAEPLP 91
Cdd:TIGR02168 237 LREELEELQEELKEAEEELEELTAELQELEEKLEElrlEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLER 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 92 PEPPAvpsEVELQHLRKELERVAGALqAQVEYNQrisllnEGQKERLREQEERLQEQQERLPEQEERLQQLAEpqnsfkE 171
Cdd:TIGR02168 317 QLEEL---EAQLEELESKLDELAEEL-AELEEKL------EELKEELESLEAELEELEAELEELESRLEELEE------Q 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 172 LNNENKSVLQLEQQVKELQEklgkeRLEAASQQKQQLTAQLSLMALPGEGHGGEHLDSEGEEAPRPMPSVPEDLEsrEAM 251
Cdd:TIGR02168 381 LETLRSKVAQLELQIASLNN-----EIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELE--ELQ 453
|
250 260 270
....*....|....*....|....*....|
gi 121940175 252 SGFMDHLEEKADLSELVEKEELGFFQYYRE 281
Cdd:TIGR02168 454 EELERLEEALEELREELEEAEQALDAAERE 483
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
4-209 |
1.81e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.89 E-value: 1.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 4 KLEQSMREQALLKAQLTQLKESLKEVQLErdeyAEHLKGERARWQQRMRKMSQEVCSLKKEKKHDKYRVEKLERSLSKLK 83
Cdd:TIGR02168 825 RLESLERRIAATERRLEDLEEQIEELSED----IESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELS 900
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 84 NQMAEPLPPEPPavpSEVELQHLRKELERVAGALQ-AQVEYNQRISLLNEGQKERLREQEERLQEQQERLPEQEERLQQL 162
Cdd:TIGR02168 901 EELRELESKRSE---LRRELEELREKLAQLELRLEgLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRL 977
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 121940175 163 aepQNSFKELNNENKSVLQleqqvkELQEKlgKERLEAASQQKQQLT 209
Cdd:TIGR02168 978 ---ENKIKELGPVNLAAIE------EYEEL--KERYDFLTAQKEDLT 1013
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
10-217 |
4.44e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.62 E-value: 4.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 10 REQALlKAQltQLKESLKEVQLERDEYA-EHLKGERARWQQRMRKMSQEVCSLKKEKKHDKYRVEKLERSLSKLKNQMAE 88
Cdd:COG1196 209 AEKAE-RYR--ELKEELKELEAELLLLKlRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 89 PLPPEPPAVPSEVELQH-LRKELERVAGALQAQVEYNQRISLLNEGQKERLREQEERLQEQQERLPEQEERLQQLAEPQN 167
Cdd:COG1196 286 AQAEEYELLAELARLEQdIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEE 365
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 121940175 168 SFKELNNENKSVLQLEQQVKELQEKLGKERLEAASQQKQQLTAQLSLMAL 217
Cdd:COG1196 366 ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLER 415
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
4-211 |
5.09e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.36 E-value: 5.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 4 KLEQSMREQALLKAQLTQLKESLKEVQLERDEY---AEHLKGERARWQQRMRKMSQEVCSLKKEKKHDKYRVEKLERSLS 80
Cdd:TIGR02169 302 EIASLERSIAEKERELEDAEERLAKLEAEIDKLlaeIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFA 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 81 KLKNQMAEPLPPEPPAVPSEVELQ-HLRKELERVAGALQAQVEYNQRISLLNEGQKERLREQEERLQEQQerlpEQEERL 159
Cdd:TIGR02169 382 ETRDELKDYREKLEKLKREINELKrELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIK----KQEWKL 457
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 121940175 160 QQLAEpqnsfkELNNENKSVLQLEQQVKELQEKLGKERLEAASQQKQQLTAQ 211
Cdd:TIGR02169 458 EQLAA------DLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASE 503
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
4-220 |
1.06e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.58 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 4 KLEQSMREQALLKAQLTQLKESLKEVQLERDEyaehLKGERARWQQRMRKMSQEVCSLKKEKKHDKYRVEKLERSLSKLK 83
Cdd:TIGR02168 268 KLEELRLEVSELEEEIEELQKELYALANEISR----LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELE 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 84 NQMAEPLPPEPPAVPSEVELQHLRKELERVAGALQAQVE-YNQRISLLNEGQKERLREQEerlqeqqerlpEQEERLQQL 162
Cdd:TIGR02168 344 EKLEELKEELESLEAELEELEAELEELESRLEELEEQLEtLRSKVAQLELQIASLNNEIE-----------RLEARLERL 412
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 121940175 163 AEPQNSFKELNNENKSVLQlEQQVKELQEKLGKERLEAASQQKQQLTAQLSLMALPGE 220
Cdd:TIGR02168 413 EDRRERLQQEIEELLKKLE-EAELKELQAELEELEEELEELQEELERLEEALEELREE 469
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
4-217 |
2.06e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.52 E-value: 2.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 4 KLEQSMREQALLKAQLTQLKESLKEVQLERDEYAEHLkgERARWQQRMRKMSQEVCSLKKEKKHDKYRVEKLERSLSKLK 83
Cdd:COG4717 82 EAEEKEEEYAELQEELEELEEELEELEAELEELREEL--EKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELR 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 84 NQmaeplppeppavpsEVELQHLRKELERVAGALQAQVEYNQrisllnegqkerlreqeerlqeqqerlPEQEERLQQLA 163
Cdd:COG4717 160 EL--------------EEELEELEAELAELQEELEELLEQLS---------------------------LATEEELQDLA 198
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 121940175 164 EP-QNSFKELNNENKSVLQLEQQVKELQEKLGKERLEAASQQKQQLTAQLSLMAL 217
Cdd:COG4717 199 EElEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLL 253
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
14-217 |
6.62e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 38.98 E-value: 6.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 14 LLKAQLTQLKESLKEVQLERDEYAEhLKGERARWQQRMRKMSQEVCSLKKE--KKHDKYRVEKLERSLSKLKNQMAEPlp 91
Cdd:COG4717 68 LNLKELKELEEELKEAEEKEEEYAE-LQEELEELEEELEELEAELEELREEleKLEKLLQLLPLYQELEALEAELAEL-- 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 92 peppavpsEVELQHLRKELERVAGALQAQVEYNQRISLLNEGQKERLREQEERLQEQQERLPEQEERLQQ-LAEPQNSFK 170
Cdd:COG4717 145 --------PERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQrLAELEEELE 216
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 121940175 171 ELNNENKsvlQLEQQVKELQEKLGKERLEAASQQKQQLTAQLSLMAL 217
Cdd:COG4717 217 EAQEELE---ELEEELEQLENELEAAALEERLKEARLLLLIAAALLA 260
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
18-270 |
6.99e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 38.89 E-value: 6.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 18 QLTQLKESLKEVQLERDEYA----EHLKGERARWQQRMRKMSQEVCS---LKKEKKHDKYRVEKLERSLSKLKNQMAEPL 90
Cdd:PRK03918 504 QLKELEEKLKKYNLEELEKKaeeyEKLKEKLIKLKGEIKSLKKELEKleeLKKKLAELEKKLDELEEELAELLKELEELG 583
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 91 PPeppavpSEVELQHLRKELERVagalqaqveYNQRISLLNEGQKERlreqeerlqeqqerlpEQEERLQQLA-EPQNSF 169
Cdd:PRK03918 584 FE------SVEELEERLKELEPF---------YNEYLELKDAEKELE----------------REEKELKKLEeELDKAF 632
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 170 KELNNENKSVLQLEQQVKELQEKLGKERLEAASQQKQQLTAQLSlmalpGEGHGGEHLDSEGEEAPRPMPSVPEDLESRE 249
Cdd:PRK03918 633 EELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELA-----GLRAELEELEKRREEIKKTLEKLKEELEERE 707
|
250 260
....*....|....*....|..
gi 121940175 250 AMSGFMDHLEE-KADLSELVEK 270
Cdd:PRK03918 708 KAKKELEKLEKaLERVEELREK 729
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1-214 |
8.51e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 38.46 E-value: 8.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 1 MEWKLEQSMREQALLKAQLTQLKESLKEVQLERDEY-AEH----LKGERARWQQRMRKMSQEVCSLKKEKKHDKYRVEKL 75
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEAEAALEEFrQKNglvdLSEEAKLLLQQLSELESQLAEARAELAEAEARLAAL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 121940175 76 ERSLSKLKNQMaeplppepPAVPSEVELQHLRKELERVAGALQAQV-----EYNQRISLLNEGQKERLREQEERLQEQQE 150
Cdd:COG3206 246 RAQLGSGPDAL--------PELLQSPVIQQLRAQLAELEAELAELSarytpNHPDVIALRAQIAALRAQLQQEAQRILAS 317
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 121940175 151 RLPEQEERLQQLAEPQNSFKELNNENKSVLQLEQQVKELQEKL--GKERLEAASQQKQQLTAQLSL 214
Cdd:COG3206 318 LEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVevARELYESLLQRLEEARLAEAL 383
|
|
| |
