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Conserved domains on  [gi|1405594267|gb|PZU51688|]
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sarcosine oxidase subunit delta [Thauera sp.]

Protein Classification

sarcosine oxidase subunit delta( domain architecture ID 10515269)

sarcosine oxidase subunit delta (SoxD) is part of the heterotetrameric enzyme that catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10-methylenetetrahydrofolate

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SoxD pfam04267
Sarcosine oxidase, delta subunit family; Sarcosine oxidase is a hetero-tetrameric enzyme that ...
 3-80 4.04e-36

Sarcosine oxidase, delta subunit family; Sarcosine oxidase is a hetero-tetrameric enzyme that contains both covalently bound FMN and non-covalently bound FAD and NAD(+). This enzyme catalyzes the oxidative demethylation of sarcosine to yield glycine, H2O2, and 5,10-CH2-tetrahydrofolate (H4folate) in a reaction requiring H4folate and O2.


:

Pssm-ID: 427830  Cd Length: 82  Bit Score: 116.88  E-value: 4.04e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405594267  3 LMTCPMNGTRPISEFAYWGEIRPA--PDADTCTDDQWADYVFNRNGAPGVKKEWWCHTP-SNTWFIAERDTEKDKVLRTY 79
Cdd:pfam04267  1 LITCPYCGPRDESEFTYGGEAHIArpPDPAALSDEEWADYLFLRDNPKGVHRERWYHAAgCRRWFNAERDTVTHEILGTY 80


                 .
gi 1405594267 80 L 80
Cdd:pfam04267 81 L 81
 
Name Accession Description Interval E-value
SoxD pfam04267
Sarcosine oxidase, delta subunit family; Sarcosine oxidase is a hetero-tetrameric enzyme that ...
 3-80 4.04e-36

Sarcosine oxidase, delta subunit family; Sarcosine oxidase is a hetero-tetrameric enzyme that contains both covalently bound FMN and non-covalently bound FAD and NAD(+). This enzyme catalyzes the oxidative demethylation of sarcosine to yield glycine, H2O2, and 5,10-CH2-tetrahydrofolate (H4folate) in a reaction requiring H4folate and O2.


Pssm-ID: 427830  Cd Length: 82  Bit Score: 116.88  E-value: 4.04e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405594267  3 LMTCPMNGTRPISEFAYWGEIRPA--PDADTCTDDQWADYVFNRNGAPGVKKEWWCHTP-SNTWFIAERDTEKDKVLRTY 79
Cdd:pfam04267  1 LITCPYCGPRDESEFTYGGEAHIArpPDPAALSDEEWADYLFLRDNPKGVHRERWYHAAgCRRWFNAERDTVTHEILGTY 80


                 .
gi 1405594267 80 L 80
Cdd:pfam04267 81 L 81
SoxD COG4311
Sarcosine oxidase delta subunit [Amino acid transport and metabolism];
2-85 2.98e-34

Sarcosine oxidase delta subunit [Amino acid transport and metabolism];


Pssm-ID: 443452  Cd Length: 94  Bit Score: 112.28  E-value: 2.98e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405594267  2 KLMTCPMNGTRPISEFAYWGE---IRPAPDADtCTDDQWADYVFNRNGAPGVKKEWWCHT-PSNTWFIAERDTEKDKVLR 77
Cdd:COG4311    1 LLITCPYCGPRDESEFTYGGEahiARPDPPAA-ASDEEWADYLFLRDNPKGVHRERWYHAaGCRKWFNVERDTVTHEILG 79


                 ....*...
gi 1405594267 78 TYLHGEDK 85
Cdd:COG4311   80 TYLAGEPR 87
 
Name Accession Description Interval E-value
SoxD pfam04267
Sarcosine oxidase, delta subunit family; Sarcosine oxidase is a hetero-tetrameric enzyme that ...
 3-80 4.04e-36

Sarcosine oxidase, delta subunit family; Sarcosine oxidase is a hetero-tetrameric enzyme that contains both covalently bound FMN and non-covalently bound FAD and NAD(+). This enzyme catalyzes the oxidative demethylation of sarcosine to yield glycine, H2O2, and 5,10-CH2-tetrahydrofolate (H4folate) in a reaction requiring H4folate and O2.


Pssm-ID: 427830  Cd Length: 82  Bit Score: 116.88  E-value: 4.04e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405594267  3 LMTCPMNGTRPISEFAYWGEIRPA--PDADTCTDDQWADYVFNRNGAPGVKKEWWCHTP-SNTWFIAERDTEKDKVLRTY 79
Cdd:pfam04267  1 LITCPYCGPRDESEFTYGGEAHIArpPDPAALSDEEWADYLFLRDNPKGVHRERWYHAAgCRRWFNAERDTVTHEILGTY 80


                 .
gi 1405594267 80 L 80
Cdd:pfam04267 81 L 81
SoxD COG4311
Sarcosine oxidase delta subunit [Amino acid transport and metabolism];
2-85 2.98e-34

Sarcosine oxidase delta subunit [Amino acid transport and metabolism];


Pssm-ID: 443452  Cd Length: 94  Bit Score: 112.28  E-value: 2.98e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405594267  2 KLMTCPMNGTRPISEFAYWGE---IRPAPDADtCTDDQWADYVFNRNGAPGVKKEWWCHT-PSNTWFIAERDTEKDKVLR 77
Cdd:COG4311    1 LLITCPYCGPRDESEFTYGGEahiARPDPPAA-ASDEEWADYLFLRDNPKGVHRERWYHAaGCRKWFNVERDTVTHEILG 79


                 ....*...
gi 1405594267 78 TYLHGEDK 85
Cdd:COG4311   80 TYLAGEPR 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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