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Conserved domains on  [gi|1404917265|gb|PZP48602|]
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peptide ABC transporter, partial [Azospirillum brasilense]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DppB super family cl33970
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 1-55 8.94e-15

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


The actual alignment was detected with superfamily member COG0601:

Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 65.47  E-value: 8.94e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1404917265   1 MFGWLLRRLGQVVPTLLILSLLVFGLQQLMPGDPALIMAGeERGDPEVLAQIRAE 55
Cdd:COG0601     1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAALLG-PRATPEAIAALRAE 54
 
Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 1-55 8.94e-15

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 65.47  E-value: 8.94e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1404917265   1 MFGWLLRRLGQVVPTLLILSLLVFGLQQLMPGDPALIMAGeERGDPEVLAQIRAE 55
Cdd:COG0601     1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAALLG-PRATPEAIAALRAE 54
PRK10914 PRK10914
dipeptide ABC transporter permease DppB;
1-55 5.96e-10

dipeptide ABC transporter permease DppB;


Pssm-ID: 182834 [Multi-domain]  Cd Length: 339  Bit Score: 52.12  E-value: 5.96e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1404917265   1 MFGWLLRRLGQVVPTLLILSLLVFGLQQLMPGDPALIMAGEERGDPEVLAQIRAE 55
Cdd:PRK10914    1 MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAE 55
BPD_transp_1_N pfam19300
Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal ...
 1-53 2.27e-09

Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal transmembrane domain of the Binding-protein-dependent transport system inner membrane component.


Pssm-ID: 437132 [Multi-domain]  Cd Length: 114  Bit Score: 48.37  E-value: 2.27e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1404917265   1 MFGWLLRRLGQVVPTLLILSLLVFGLQQLMPGDPALIMAGEErGDPEVLAQIR 53
Cdd:pfam19300   1 MLRFLVRRTLGAVVILLIISAVTFFLFYAIPRDPARLACGKN-CTPETLALIR 52
 
Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 1-55 8.94e-15

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 65.47  E-value: 8.94e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1404917265   1 MFGWLLRRLGQVVPTLLILSLLVFGLQQLMPGDPALIMAGeERGDPEVLAQIRAE 55
Cdd:COG0601     1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAALLG-PRATPEAIAALRAE 54
PRK10914 PRK10914
dipeptide ABC transporter permease DppB;
1-55 5.96e-10

dipeptide ABC transporter permease DppB;


Pssm-ID: 182834 [Multi-domain]  Cd Length: 339  Bit Score: 52.12  E-value: 5.96e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1404917265   1 MFGWLLRRLGQVVPTLLILSLLVFGLQQLMPGDPALIMAGEERGDPEVLAQIRAE 55
Cdd:PRK10914    1 MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAE 55
BPD_transp_1_N pfam19300
Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal ...
 1-53 2.27e-09

Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal transmembrane domain of the Binding-protein-dependent transport system inner membrane component.


Pssm-ID: 437132 [Multi-domain]  Cd Length: 114  Bit Score: 48.37  E-value: 2.27e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1404917265   1 MFGWLLRRLGQVVPTLLILSLLVFGLQQLMPGDPALIMAGEErGDPEVLAQIR 53
Cdd:pfam19300   1 MLRFLVRRTLGAVVILLIISAVTFFLFYAIPRDPARLACGKN-CTPETLALIR 52
PRK15081 PRK15081
glutathione ABC transporter permease GsiC; Provisional
 1-55 9.33e-09

glutathione ABC transporter permease GsiC; Provisional


Pssm-ID: 185039 [Multi-domain]  Cd Length: 306  Bit Score: 48.56  E-value: 9.33e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1404917265   1 MFGWLLRRLGQVVPTLLILSLLVFGLQQLMPGDPALIMAGEErGDPEVLAQIRAE 55
Cdd:PRK15081    1 MLNYVIKRLLGLIPTLLIVAVLVFLFVHLLPGDPARLAAGPE-ADAQVVALVRQQ 54
oppB PRK09471
oligopeptide ABC transporter permease OppB;
1-55 7.47e-06

oligopeptide ABC transporter permease OppB;


Pssm-ID: 181886 [Multi-domain]  Cd Length: 306  Bit Score: 40.43  E-value: 7.47e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1404917265   1 MFGWLLRRLGQVVPTLLILSLLVFGLQQLMPGDPaliMAGEERGDPEVLAQIRAE 55
Cdd:PRK09471    1 MLKFILRRCLEAIPTLFILITISFFMMRLAPGSP---FTGERTLPPEVMANIEAK 52
PRK10352 PRK10352
nickel transporter permease NikB; Provisional
 1-36 9.49e-04

nickel transporter permease NikB; Provisional


Pssm-ID: 182400 [Multi-domain]  Cd Length: 314  Bit Score: 34.67  E-value: 9.49e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1404917265   1 MFGWLLRRLGQVVPTLLILSLLVFGLQQLMPGDPAL 36
Cdd:PRK10352    1 MLRYILRRLLLLIPMLLAASVIIFLMLRLGTGDPAL 36
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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